AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0625190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625190 MtrunA17_Chr4g0000511 96.372 634 13 3 1 628 1 630 0.0 1223
Msa0625190 MtrunA17_Chr1g0208141 74.658 584 143 1 50 628 14 597 0.0 899
Msa0625190 MtrunA17_Chr1g0210971 34.564 298 172 7 115 390 50 346 2.12e-32 129
Msa0625190 MtrunA17_Chr3g0077771 31.890 254 153 5 149 385 117 367 2.26e-30 123
Msa0625190 MtrunA17_Chr4g0004721 29.412 255 171 4 149 402 68 314 4.31e-29 117
Msa0625190 MtrunA17_Chr4g0004711 29.183 257 167 5 150 402 68 313 6.60e-28 114
Msa0625190 MtrunA17_Chr4g0004681 27.907 258 172 4 149 406 67 310 8.36e-27 111
Msa0625190 MtrunA17_Chr6g0450811 30.081 246 168 3 150 391 122 367 5.79e-26 110
Msa0625190 MtrunA17_Chr8g0351111 29.811 265 167 6 150 409 76 326 2.18e-23 101
Msa0625190 MtrunA17_Chr4g0004741 31.154 260 164 6 149 406 67 313 3.56e-22 97.8
Msa0625190 MtrunA17_Chr2g0331641 29.885 261 161 7 150 402 68 314 5.00e-20 91.3
Msa0625190 MtrunA17_Chr6g0450821 27.347 245 157 4 150 391 92 318 8.66e-20 91.3
Msa0625190 MtrunA17_Chr8g0351121 29.070 258 168 7 125 376 89 337 3.12e-19 89.7
Msa0625190 MtrunA17_Chr8g0351141 25.670 261 173 6 150 404 79 324 6.66e-18 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625190 AT1G17745.1 75.801 624 138 4 16 628 3 624 0.0 956
Msa0625190 AT1G17745.2 72.504 651 139 6 16 628 3 651 0.0 936
Msa0625190 AT4G34200.1 77.034 553 127 0 76 628 51 603 0.0 890
Msa0625190 AT3G19480.1 76.243 543 129 0 86 628 46 588 0.0 865
Msa0625190 AT1G68010.1 34.564 298 172 7 115 390 50 346 8.90e-32 127
Msa0625190 AT1G68010.3 34.737 285 163 7 115 377 50 333 7.28e-31 124
Msa0625190 AT1G68010.2 34.783 299 171 8 115 390 50 347 3.35e-30 123
Msa0625190 AT1G79870.1 30.980 255 165 6 150 402 68 313 1.83e-27 113
Msa0625190 AT5G14780.3 31.532 222 148 3 156 373 100 321 4.57e-27 113
Msa0625190 AT5G14780.2 31.532 222 148 3 156 373 112 333 4.59e-27 113
Msa0625190 AT5G14780.1 31.532 222 148 3 156 373 126 347 9.34e-27 113
Msa0625190 AT1G12550.1 29.352 293 186 8 117 404 43 319 1.10e-26 111
Msa0625190 AT1G72190.1 30.380 237 154 4 150 377 116 350 2.93e-26 111
Msa0625190 AT2G45630.2 28.179 291 193 8 117 404 59 336 2.01e-22 99.4
Msa0625190 AT1G79870.2 29.528 254 151 6 150 402 68 294 6.76e-22 97.1

Find 164 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCAAGAGCTTCCTTATT+TGG 0.155413 4_3:+4194601 None:intergenic
CTACAAGCTGCTACTGAATT+TGG 0.182846 4_3:-4197142 Msa0625190:CDS
AAAACAAACCTGTGCTTCTT+TGG 0.221839 4_3:+4195663 None:intergenic
TGATACAGCACTCGCGAATT+TGG 0.228646 4_3:+4194873 None:intergenic
TTCCTTAACTCCAACACTTT+TGG 0.245786 4_3:-4197547 Msa0625190:CDS
ATCAACTCCTTAATTATTAC+TGG 0.250892 4_3:-4197818 Msa0625190:five_prime_UTR
TGGGAAAACATTAGCAATAA+TGG 0.251279 4_3:-4196449 Msa0625190:CDS
CTTACATGTGTGGGATCTTT+TGG 0.261096 4_3:-4194799 Msa0625190:CDS
CCACATTGGATATTTGTATC+TGG 0.271958 4_3:+4194899 None:intergenic
CATGTACCATACCGGCTTTA+AGG 0.285448 4_3:+4197014 None:intergenic
ATCTTCTTGCATAGGTCTTC+TGG 0.285848 4_3:+4197286 None:intergenic
TTGCACTAACTTACTGTCTT+TGG 0.289295 4_3:+4195726 None:intergenic
ACATTAGCAATAATGGGATT+TGG 0.308937 4_3:-4196442 Msa0625190:CDS
CATTTGTATTCATCCTTTGA+TGG 0.330887 4_3:-4194094 Msa0625190:three_prime_UTR
ACAGAAACCAGTAATAATTA+AGG 0.338878 4_3:+4197811 None:intergenic
TACTGGTTTCTGTTATATAT+AGG 0.339423 4_3:-4197801 Msa0625190:five_prime_UTR
AAGGAAGCTCTTGAGAATAT+TGG 0.341193 4_3:-4194595 Msa0625190:CDS
GGTAAAGTCGGAAACATATT+AGG 0.343317 4_3:-4194712 Msa0625190:CDS
TCACCAGGTATTATCAGAAT+TGG 0.344756 4_3:-4195208 Msa0625190:intron
GGGAAAACATTAGCAATAAT+GGG 0.345954 4_3:-4196448 Msa0625190:CDS
ATGAGAGAGTTTAATGTTGT+TGG 0.351606 4_3:+4197516 None:intergenic
TTGACAATTGTGTTTGATAT+TGG 0.351660 4_3:+4195021 None:intergenic
TTCCAAAAGTGTTGGAGTTA+AGG 0.352126 4_3:+4197545 None:intergenic
GCGTAGGAAGAAAGCGCTTA+TGG 0.355828 4_3:-4194644 Msa0625190:CDS
GTTAAGGAATGAGAGATTAG+AGG 0.361871 4_3:+4197561 None:intergenic
TTGAAGACTTTGTTAGTAGT+TGG 0.364330 4_3:+4196250 None:intergenic
GCCTGCTTCTCCGAGTTTCT+CGG 0.380012 4_3:+4197360 None:intergenic
CGTCGATGAAGAGCCAAATA+AGG 0.383184 4_3:-4194614 Msa0625190:CDS
AGATAGAAGAAAAGGTTTAG+AGG 0.383296 4_3:+4197715 None:intergenic
GCTCTATCAGCTGGAGCATA+AGG 0.392374 4_3:+4196355 None:intergenic
ATGTACCATACCGGCTTTAA+GGG 0.400835 4_3:+4197015 None:intergenic
GGTGTGGATGTGAGCTTAGA+AGG 0.404203 4_3:-4194778 Msa0625190:CDS
AAAGGAAAGTTGAAAGTTGT+TGG 0.405100 4_3:-4197196 Msa0625190:CDS
AGGAGTTGATGTGCGGCAAA+TGG 0.407458 4_3:+4197831 None:intergenic
GTCTAGGTCATCGGGACCCC+TGG 0.409158 4_3:+4195086 None:intergenic
GATTACATCGCAAAGCAAAA+AGG 0.410558 4_3:-4194985 Msa0625190:CDS
CAAGTATGTTGGAGTGTCTA+TGG 0.411120 4_3:-4196473 Msa0625190:CDS
TGAGAGAGTTTAATGTTGTT+GGG 0.412818 4_3:+4197517 None:intergenic
ATAATGGGATTTGGAAAAGT+TGG 0.416575 4_3:-4196433 Msa0625190:CDS
ACTGATCAGCCTGGGATGAT+TGG 0.420709 4_3:-4194733 Msa0625190:CDS
TTAGTCAAAGCTCTTGATAG+TGG 0.425387 4_3:-4196148 Msa0625190:CDS
GATAGAAGAAAAGGTTTAGA+GGG 0.425599 4_3:+4197716 None:intergenic
AACCTGTGCTTCTTTGGTGC+TGG 0.432833 4_3:+4195669 None:intergenic
TTGGTTTCAGAAGAGAAGAT+AGG 0.433144 4_3:+4197595 None:intergenic
GCAAGGCGTGCAAAAGGATT+AGG 0.435231 4_3:-4196400 Msa0625190:CDS
TTCAATATAGATAGAAGAAA+AGG 0.437478 4_3:+4197707 None:intergenic
GATTGCTCTTCTTGCTGCTA+TGG 0.439120 4_3:-4197065 Msa0625190:CDS
CGATGTAATCAGCATTTACA+AGG 0.440577 4_3:+4194998 None:intergenic
ATTGACGGAAAAGTGAAGTA+TGG 0.441680 4_3:-4194832 Msa0625190:CDS
AACAACAGAAACAACGTTGT+TGG 0.441735 4_3:+4197417 None:intergenic
AAGAAAGCGCTTATGGCTAT+TGG 0.442305 4_3:-4194637 Msa0625190:CDS
GCAATTATTTGAAAGGGAAA+AGG 0.449772 4_3:-4194190 Msa0625190:three_prime_UTR
GTGATTGCTACTCCTCATCT+TGG 0.451139 4_3:-4195694 Msa0625190:CDS
TCCGAGAAACTCGGAGAAGC+AGG 0.463753 4_3:-4197361 Msa0625190:CDS
TTCTCAGCCAGCACAACATA+TGG 0.465579 4_3:+4195183 None:intergenic
ACTAGTGCAATTATTTGAAA+GGG 0.469056 4_3:-4194196 Msa0625190:three_prime_UTR
ATATATATATAGGTATTGAT+TGG 0.470124 4_3:-4194472 Msa0625190:three_prime_UTR
CATCAAAGGATGAATACAAA+TGG 0.471148 4_3:+4194095 None:intergenic
TGGAGCTGTGCCTGCTATTG+AGG 0.472247 4_3:-4194575 Msa0625190:CDS
CCACAAAACAACGTTGTTGA+GGG 0.472497 4_3:+4197488 None:intergenic
TATGGCTCGTAATGTTTCTC+AGG 0.473207 4_3:-4197047 Msa0625190:CDS
GAAGAAAAGGTTTAGAGGGA+AGG 0.473708 4_3:+4197720 None:intergenic
AACTAGTGCAATTATTTGAA+AGG 0.474444 4_3:-4194197 Msa0625190:three_prime_UTR
GGAGTTGATGTGCGGCAAAT+GGG 0.474859 4_3:+4197832 None:intergenic
GCTTGAGAAAAGTGATAGCT+TGG 0.477598 4_3:-4194412 Msa0625190:three_prime_UTR
TGTATCTGGATTGACTCAAC+AGG 0.483012 4_3:+4194913 None:intergenic
TTAGCTGTGCAGTTGGTATC+CGG 0.483277 4_3:-4195150 Msa0625190:CDS
AGATTGGATTCCACTTCCTC+CGG 0.486443 4_3:+4195131 None:intergenic
GAAGTGGCAAGGCGTGCAAA+AGG 0.492552 4_3:-4196406 Msa0625190:CDS
AACTGCTGTCAATGCTCCTA+TGG 0.495186 4_3:-4195482 Msa0625190:CDS
AGTGGTTTACCGATCGGCCA+GGG 0.499241 4_3:-4195103 Msa0625190:CDS
AAGAAAAGGTTTAGAGGGAA+GGG 0.500168 4_3:+4197721 None:intergenic
ATGAGCTAGTTCCACTTGGT+TGG 0.500510 4_3:+4194142 None:intergenic
ACTAACTTACTGTCTTTGGC+TGG 0.501929 4_3:+4195730 None:intergenic
TTGAAAGTTGTTGGTAGAGC+TGG 0.503758 4_3:-4197187 Msa0625190:CDS
GCTGTTGTTGGTGCATTGAA+TGG 0.504053 4_3:-4195517 Msa0625190:CDS
GAAATAGCAGAGGCTGTTGT+TGG 0.504211 4_3:-4195529 Msa0625190:CDS
ACAAGACAAGTGTTTGAAGC+AGG 0.504544 4_3:-4197220 Msa0625190:CDS
CTCTTTCCTCGCTTATGCGA+AGG 0.505232 4_3:+4194962 None:intergenic
TGATAGTGGAATTGTTGCTC+AGG 0.505410 4_3:-4196134 Msa0625190:intron
TGCTCCTATGGTTGCTCCTG+AGG 0.505857 4_3:-4195470 Msa0625190:intron
ATTGGCTCCATATGTTGTGC+TGG 0.505952 4_3:-4195190 Msa0625190:CDS
AATTGAGTTGGTACAAGAAG+AGG 0.507359 4_3:+4197627 None:intergenic
ACTATTGCTGCTGCTGAACA+TGG 0.507722 4_3:-4197088 Msa0625190:CDS
CAAAAGATCCCACACATGTA+AGG 0.508676 4_3:+4194800 None:intergenic
CGCGAATTTGGACTCCACAT+TGG 0.508973 4_3:+4194885 None:intergenic
AAGTCTGGTGTCTAGGTCAT+CGG 0.511273 4_3:+4195077 None:intergenic
AAGTGGTTTACCGATCGGCC+AGG 0.511493 4_3:-4195104 Msa0625190:CDS
CTTCGAGCCATGATCACAAA+AGG 0.512301 4_3:-4195054 Msa0625190:CDS
CAGTTGGTATCCGGAGGAAG+TGG 0.513484 4_3:-4195141 Msa0625190:CDS
CTCGAAGAAGTCTGGTGTCT+AGG 0.515153 4_3:+4195070 None:intergenic
GATCATGGCTCGAAGAAGTC+TGG 0.515479 4_3:+4195062 None:intergenic
AGTCTGGTGTCTAGGTCATC+GGG 0.515480 4_3:+4195078 None:intergenic
TTTAAGACAATTAGGACATG+TGG 0.518255 4_3:-4197329 Msa0625190:CDS
CTCTATCAGCTGGAGCATAA+GGG 0.521140 4_3:+4196356 None:intergenic
ACCACAAAACAACGTTGTTG+AGG 0.524562 4_3:+4197487 None:intergenic
ATTGACTCAACAGGTAGCTC+AGG 0.525036 4_3:+4194922 None:intergenic
AAATTCATTAAACATAGTAT+AGG 0.528082 4_3:+4194063 None:intergenic
TGCAGACAGACTGATCAGCC+TGG 0.528856 4_3:-4194742 Msa0625190:CDS
AACACAAACTCCTCAATAGC+AGG 0.528948 4_3:+4194565 None:intergenic
TTGGTGCTGGCTCCAAGATG+AGG 0.530869 4_3:+4195682 None:intergenic
TGGAATCCAATCTGTAAAAG+TGG 0.532831 4_3:-4195121 Msa0625190:CDS
TTGTTGGTAGAGCTGGTGTT+GGG 0.537332 4_3:-4197180 Msa0625190:CDS
TTTGACTCAATAGGAGGGTG+TGG 0.537514 4_3:-4195557 Msa0625190:intron
AACTTACTGTCTTTGGCTGG+AGG 0.538388 4_3:+4195733 None:intergenic
TTGTTAGTAGTTGGAGTGAG+AGG 0.541743 4_3:+4196259 None:intergenic
TCAGAAGAGAAGATAGGTGA+AGG 0.543290 4_3:+4197601 None:intergenic
ACAGCACGTGCTCTATCAGC+TGG 0.543522 4_3:+4196346 None:intergenic
TGGAAAAGTTGGATCTGAAG+TGG 0.544222 4_3:-4196422 Msa0625190:CDS
AGCCAGCACCAAAGAAGCAC+AGG 0.545917 4_3:-4195671 Msa0625190:intron
TTTACCTCAGGAGCAACCAT+AGG 0.548169 4_3:+4195466 None:intergenic
GCGAGTGCTGTATCAGAGAC+TGG 0.549715 4_3:-4194865 Msa0625190:CDS
TTCTCGGAGACCAAGATCGT+TGG 0.552120 4_3:+4197376 None:intergenic
ATAGGTAAATAAACCATCAA+AGG 0.554944 4_3:+4194081 None:intergenic
TTATATGAGCTAGTTCCACT+TGG 0.556440 4_3:+4194138 None:intergenic
CATCGGGACCCCTGGCCGAT+CGG 0.557463 4_3:+4195094 None:intergenic
GTTGTTGGTAGAGCTGGTGT+TGG 0.558071 4_3:-4197181 Msa0625190:CDS
GTGTGGATGTGAGCTTAGAA+GGG 0.562427 4_3:-4194777 Msa0625190:CDS
CCGACTTTACCAATCATCCC+AGG 0.564497 4_3:+4194724 None:intergenic
TGCTGGCTGAGAAGCTAGGA+AGG 0.566544 4_3:-4195173 Msa0625190:CDS
GCTGATAGAGCACGTGCTGT+TGG 0.568204 4_3:-4196343 Msa0625190:CDS
ATCTTGGTCTCCGAGAAACT+CGG 0.570682 4_3:-4197370 Msa0625190:CDS
ATGTTGGAGTGTCTATGGTT+GGG 0.571426 4_3:-4196468 Msa0625190:CDS
AGGAAGGTTAGCTGTGCAGT+TGG 0.575316 4_3:-4195157 Msa0625190:CDS
CATGATACAAAACTTAGTAC+AGG 0.575904 4_3:+4194321 None:intergenic
TGGCTGAGGAACAAGTATGT+TGG 0.577015 4_3:-4196484 Msa0625190:CDS
AGCTTGAGATCTTCTTGCAT+AGG 0.577862 4_3:+4197278 None:intergenic
ACTGGTCAGATAAGCATTGA+CGG 0.579892 4_3:-4194847 Msa0625190:CDS
CAAGTGTTTGAAGCAGGGAA+AGG 0.581477 4_3:-4197214 Msa0625190:CDS
AGGTGAAGGAAGAATTGAGT+TGG 0.583715 4_3:+4197615 None:intergenic
TATGTTGGAGTGTCTATGGT+TGG 0.584348 4_3:-4196469 Msa0625190:CDS
TGTAAAAGTGGTTTACCGAT+CGG 0.589128 4_3:-4195109 Msa0625190:CDS
ATCATCAATGTTGCTAGAGG+TGG 0.590742 4_3:-4196190 Msa0625190:CDS
GCTGATGCTTCCCTTAAAGC+CGG 0.593057 4_3:-4197025 Msa0625190:intron
CCTGGGATGATTGGTAAAGT+CGG 0.595667 4_3:-4194724 Msa0625190:CDS
ATAGCTTGGTTATGAAGTAA+TGG 0.595931 4_3:-4194398 Msa0625190:three_prime_UTR
GGGAATGATTCCAAAAGTGT+TGG 0.599623 4_3:+4197537 None:intergenic
GCAGCAATAGTATTAGCAGT+AGG 0.600020 4_3:+4197100 None:intergenic
ACACCACACCTTACATGTGT+GGG 0.601870 4_3:-4194808 Msa0625190:CDS
TTATTTGAAAGGGAAAAGGT+AGG 0.602025 4_3:-4194186 Msa0625190:three_prime_UTR
TACACCACACCTTACATGTG+TGG 0.602905 4_3:-4194809 Msa0625190:CDS
CTATTGCTGCTGCTGAACAT+GGG 0.618691 4_3:-4197087 Msa0625190:CDS
CAAGACAAGTGTTTGAAGCA+GGG 0.623927 4_3:-4197219 Msa0625190:CDS
TGGTGTTGGGATTGATAATG+TGG 0.634025 4_3:-4197167 Msa0625190:CDS
GTTGTGCTGGCTGAGAAGCT+AGG 0.640220 4_3:-4195177 Msa0625190:CDS
AATGTGATGCACCAACCAAG+TGG 0.640895 4_3:-4194153 Msa0625190:three_prime_UTR
AAGTTGGATCTGAAGTGGCA+AGG 0.647081 4_3:-4196417 Msa0625190:CDS
CCAGATACAAATATCCAATG+TGG 0.650082 4_3:-4194899 Msa0625190:CDS
GCAGACAGACTGATCAGCCT+GGG 0.652171 4_3:-4194741 Msa0625190:CDS
GTGGTTTACCGATCGGCCAG+GGG 0.652751 4_3:-4195102 Msa0625190:CDS
CTAAGATGAAGAAGGGTGTG+AGG 0.653832 4_3:-4196213 Msa0625190:CDS
AAAAGGCCTTCGCATAAGCG+AGG 0.668434 4_3:-4194968 Msa0625190:CDS
GATCCCACACATGTAAGGTG+TGG 0.673309 4_3:+4194805 None:intergenic
TAGAGTATAAATAAAACTAG+CGG 0.676996 4_3:-4194371 Msa0625190:three_prime_UTR
GCGTCGGAAGAACATCGCGT+AGG 0.678508 4_3:-4194660 Msa0625190:CDS
AATGTGAGCTTTATGAGCGT+CGG 0.682198 4_3:-4194676 Msa0625190:CDS
ATAATTAAGGAGTTGATGTG+CGG 0.682353 4_3:+4197824 None:intergenic
GCTGTGCAGTTGGTATCCGG+AGG 0.685286 4_3:-4195147 Msa0625190:CDS
TGTGGCTATTGAAATAGCAG+AGG 0.685958 4_3:-4195539 Msa0625190:CDS
AGGATCATCAATGTTGCTAG+AGG 0.702837 4_3:-4196193 Msa0625190:CDS
GATGCTTTGATTGTGAGAAG+CGG 0.715751 4_3:-4197253 Msa0625190:CDS
CATAAGCGAGGAAAGAGTAG+CGG 0.716736 4_3:-4194956 Msa0625190:CDS
AGCTCTTGATGTGTTCACTG+AGG 0.735803 4_3:-4195758 Msa0625190:CDS
GTGAAGTGAGATGAAATCAG+CGG 0.758782 4_3:+4196285 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATACTATATATATATAT+AGG - chr4_3:4197440-4197459 Msa0625190:CDS 10.0%
!! ATATAGTTTAATAGTATTAG+TGG - chr4_3:4194980-4194999 Msa0625190:CDS 15.0%
!!! AGGTTAGTTTTTAATTTATA+CGG - chr4_3:4195049-4195068 Msa0625190:CDS 15.0%
!!! TCTTGTTTGAAATATATTTA+AGG - chr4_3:4195215-4195234 Msa0625190:intron 15.0%
!!! ATATATATATAGGTATTGAT+TGG - chr4_3:4197450-4197469 Msa0625190:CDS 15.0%
!! AAATTCATTAAACATAGTAT+AGG + chr4_3:4197862-4197881 None:intergenic 15.0%
!!! AAATTTTGAATTGTGATTTG+AGG + chr4_3:4194167-4194186 None:intergenic 20.0%
!! TTCAATATAGATAGAAGAAA+AGG + chr4_3:4194218-4194237 None:intergenic 20.0%
!!! TTACAAGTTTTAAGACAATT+AGG - chr4_3:4194585-4194604 Msa0625190:CDS 20.0%
!!! TACACAAAAAGTACATTTTT+AGG - chr4_3:4195299-4195318 Msa0625190:intron 20.0%
!! TGTAAAAACACACATATTAT+AGG + chr4_3:4195364-4195383 None:intergenic 20.0%
!! GATAGTATAATAGTAATTCA+AGG + chr4_3:4195842-4195861 None:intergenic 20.0%
!! AAAATAGTAATGGTAATTCA+AGG + chr4_3:4195932-4195951 None:intergenic 20.0%
!!! TTGAATTACCATTACTATTT+TGG - chr4_3:4195931-4195950 Msa0625190:intron 20.0%
!!! AAATAGAAATGTCATTTGAA+TGG + chr4_3:4196124-4196143 None:intergenic 20.0%
!!! ATTTCTATTTTGTTTGAATG+TGG - chr4_3:4196134-4196153 Msa0625190:intron 20.0%
!! AATTGATGAGAAAAAAAACT+TGG + chr4_3:4196346-4196365 None:intergenic 20.0%
!! TAGAGTATAAATAAAACTAG+CGG - chr4_3:4197551-4197570 Msa0625190:CDS 20.0%
! ATCAACTCCTTAATTATTAC+TGG - chr4_3:4194104-4194123 Msa0625190:three_prime_UTR 25.0%
! ACAGAAACCAGTAATAATTA+AGG + chr4_3:4194114-4194133 None:intergenic 25.0%
!!! TACTGGTTTCTGTTATATAT+AGG - chr4_3:4194121-4194140 Msa0625190:three_prime_UTR 25.0%
!!! ATTAGAGGATTTTGAAGATT+TGG + chr4_3:4194349-4194368 None:intergenic 25.0%
!!! TTTGAGTTGTTTGTTTTGTT+TGG + chr4_3:4194485-4194504 None:intergenic 25.0%
! TAACGACAAATGTTAGTAAT+TGG - chr4_3:4195021-4195040 Msa0625190:CDS 25.0%
! AATGTTAGTAATTGGTTGTT+AGG - chr4_3:4195029-4195048 Msa0625190:CDS 25.0%
!!! CAAAGTTTTAAATTGCAGTT+GGG - chr4_3:4195162-4195181 Msa0625190:CDS 25.0%
!! TGATAATTTTTGCAGGAAAA+TGG - chr4_3:4195418-4195437 Msa0625190:intron 25.0%
! AACATGTTAATTGAAGTAAG+AGG + chr4_3:4195819-4195838 None:intergenic 25.0%
! GAAAATTATGTGAGCTAAAA+GGG + chr4_3:4196320-4196339 None:intergenic 25.0%
! AGAAAATTATGTGAGCTAAA+AGG + chr4_3:4196321-4196340 None:intergenic 25.0%
!! ATTAGAACTAGTTTAGACAT+AGG - chr4_3:4196607-4196626 Msa0625190:intron 25.0%
! TTGACAATTGTGTTTGATAT+TGG + chr4_3:4196904-4196923 None:intergenic 25.0%
! AACTAGTGCAATTATTTGAA+AGG - chr4_3:4197725-4197744 Msa0625190:five_prime_UTR 25.0%
! ACTAGTGCAATTATTTGAAA+GGG - chr4_3:4197726-4197745 Msa0625190:five_prime_UTR 25.0%
! ATAGGTAAATAAACCATCAA+AGG + chr4_3:4197844-4197863 None:intergenic 25.0%
! TTTTCTTCAACTTGAGGTTT+TGG + chr4_3:4194066-4194085 None:intergenic 30.0%
!! ATAATTAAGGAGTTGATGTG+CGG + chr4_3:4194101-4194120 None:intergenic 30.0%
GATAGAAGAAAAGGTTTAGA+GGG + chr4_3:4194209-4194228 None:intergenic 30.0%
AGATAGAAGAAAAGGTTTAG+AGG + chr4_3:4194210-4194229 None:intergenic 30.0%
TGAGAGAGTTTAATGTTGTT+GGG + chr4_3:4194408-4194427 None:intergenic 30.0%
ATGAGAGAGTTTAATGTTGT+TGG + chr4_3:4194409-4194428 None:intergenic 30.0%
AAATGAAAAACCAACGATCT+TGG - chr4_3:4194536-4194555 Msa0625190:exon 30.0%
! TTTAAGACAATTAGGACATG+TGG - chr4_3:4194593-4194612 Msa0625190:CDS 30.0%
AAAGGAAAGTTGAAAGTTGT+TGG - chr4_3:4194726-4194745 Msa0625190:CDS 30.0%
! CCAACTGCAATTTAAAACTT+TGG + chr4_3:4195164-4195183 None:intergenic 30.0%
!!! CCAAAGTTTTAAATTGCAGT+TGG - chr4_3:4195161-4195180 Msa0625190:CDS 30.0%
! ACTACTATGAGTATTTGTTG+AGG - chr4_3:4195383-4195402 Msa0625190:intron 30.0%
!!! GAGATGTTGATAATTTTTGC+AGG - chr4_3:4195411-4195430 Msa0625190:intron 30.0%
TGGGAAAACATTAGCAATAA+TGG - chr4_3:4195473-4195492 Msa0625190:CDS 30.0%
GGGAAAACATTAGCAATAAT+GGG - chr4_3:4195474-4195493 Msa0625190:CDS 30.0%
! ACATTAGCAATAATGGGATT+TGG - chr4_3:4195480-4195499 Msa0625190:CDS 30.0%
! ATAATGGGATTTGGAAAAGT+TGG - chr4_3:4195489-4195508 Msa0625190:CDS 30.0%
TTGAAGACTTTGTTAGTAGT+TGG + chr4_3:4195675-4195694 None:intergenic 30.0%
! ACTTTTGCTAAGATGAAGAA+GGG - chr4_3:4195702-4195721 Msa0625190:CDS 30.0%
TCAAGGAACATGTAAACTAT+AGG + chr4_3:4195915-4195934 None:intergenic 30.0%
TGCGATTTCCAAAATAGTAA+TGG + chr4_3:4195942-4195961 None:intergenic 30.0%
GAAGAAGAAAAAATGCAAGT+AGG + chr4_3:4196295-4196314 None:intergenic 30.0%
!!! CTCATCAATTTTGACTCAAT+AGG - chr4_3:4196356-4196375 Msa0625190:CDS 30.0%
!!! ATCAATTTTGACTCAATAGG+AGG - chr4_3:4196359-4196378 Msa0625190:CDS 30.0%
!!! TCAATTTTGACTCAATAGGA+GGG - chr4_3:4196360-4196379 Msa0625190:CDS 30.0%
AGCATACTAATGTTACAATG+TGG + chr4_3:4196489-4196508 None:intergenic 30.0%
! AAAGCATAGTTTAATTTCCG+TGG + chr4_3:4196540-4196559 None:intergenic 30.0%
ACGGAAATTAAACTATGCTT+TGG - chr4_3:4196539-4196558 Msa0625190:intron 30.0%
AAGCAAAAAAAGAACAATGC+AGG + chr4_3:4196662-4196681 None:intergenic 30.0%
TAATTGTTTGCAATTTCACC+AGG - chr4_3:4196699-4196718 Msa0625190:intron 30.0%
! AATAATGCCTTTTGTGATCA+TGG + chr4_3:4196878-4196897 None:intergenic 30.0%
ATAGCTTGGTTATGAAGTAA+TGG - chr4_3:4197524-4197543 Msa0625190:CDS 30.0%
CATGATACAAAACTTAGTAC+AGG + chr4_3:4197604-4197623 None:intergenic 30.0%
!! CTGTACTAAGTTTTGTATCA+TGG - chr4_3:4197602-4197621 Msa0625190:CDS 30.0%
GCAATTATTTGAAAGGGAAA+AGG - chr4_3:4197732-4197751 Msa0625190:five_prime_UTR 30.0%
TTATTTGAAAGGGAAAAGGT+AGG - chr4_3:4197736-4197755 Msa0625190:five_prime_UTR 30.0%
CATCAAAGGATGAATACAAA+TGG + chr4_3:4197830-4197849 None:intergenic 30.0%
CATTTGTATTCATCCTTTGA+TGG - chr4_3:4197828-4197847 Msa0625190:five_prime_UTR 30.0%
! GGAGATTTTTCTTCAACTTG+AGG + chr4_3:4194072-4194091 None:intergenic 35.0%
AAGAAAAGGTTTAGAGGGAA+GGG + chr4_3:4194204-4194223 None:intergenic 35.0%
!! AATTGAGTTGGTACAAGAAG+AGG + chr4_3:4194298-4194317 None:intergenic 35.0%
TTGGTTTCAGAAGAGAAGAT+AGG + chr4_3:4194330-4194349 None:intergenic 35.0%
GTTAAGGAATGAGAGATTAG+AGG + chr4_3:4194364-4194383 None:intergenic 35.0%
! TTCCTTAACTCCAACACTTT+TGG - chr4_3:4194375-4194394 Msa0625190:three_prime_UTR 35.0%
!! TTCCAAAAGTGTTGGAGTTA+AGG + chr4_3:4194380-4194399 None:intergenic 35.0%
AACAACAGAAACAACGTTGT+TGG + chr4_3:4194508-4194527 None:intergenic 35.0%
ATCATGAACATGTACCATAC+CGG + chr4_3:4194919-4194938 None:intergenic 35.0%
GATTGACGTATATTCAACGT+TGG - chr4_3:4195093-4195112 Msa0625190:CDS 35.0%
TTCAAACAAGAGATCTAGCA+AGG + chr4_3:4195206-4195225 None:intergenic 35.0%
! CACTTTTGCTAAGATGAAGA+AGG - chr4_3:4195701-4195720 Msa0625190:CDS 35.0%
TTAGTCAAAGCTCTTGATAG+TGG - chr4_3:4195774-4195793 Msa0625190:intron 35.0%
GATCAACACAATTCAGTGAA+TGG + chr4_3:4196081-4196100 None:intergenic 35.0%
!! ATTTTGTTTGAATGTGGAGC+AGG - chr4_3:4196140-4196159 Msa0625190:CDS 35.0%
TTGCACTAACTTACTGTCTT+TGG + chr4_3:4196199-4196218 None:intergenic 35.0%
AAAACAAACCTGTGCTTCTT+TGG + chr4_3:4196262-4196281 None:intergenic 35.0%
!!! TGTGGTTGTTTTTTTACCTC+AGG + chr4_3:4196471-4196490 None:intergenic 35.0%
AGTTTAGACATAGGTCACAT+TGG - chr4_3:4196616-4196635 Msa0625190:intron 35.0%
TCACCAGGTATTATCAGAAT+TGG - chr4_3:4196714-4196733 Msa0625190:intron 35.0%
TGGAATCCAATCTGTAAAAG+TGG - chr4_3:4196801-4196820 Msa0625190:intron 35.0%
!! GGTAAACCACTTTTACAGAT+TGG + chr4_3:4196810-4196829 None:intergenic 35.0%
TGTAAAAGTGGTTTACCGAT+CGG - chr4_3:4196813-4196832 Msa0625190:intron 35.0%
CGATGTAATCAGCATTTACA+AGG + chr4_3:4196927-4196946 None:intergenic 35.0%
GATTACATCGCAAAGCAAAA+AGG - chr4_3:4196937-4196956 Msa0625190:intron 35.0%
CCACATTGGATATTTGTATC+TGG + chr4_3:4197026-4197045 None:intergenic 35.0%
CCAGATACAAATATCCAATG+TGG - chr4_3:4197023-4197042 Msa0625190:intron 35.0%
ATTGACGGAAAAGTGAAGTA+TGG - chr4_3:4197090-4197109 Msa0625190:CDS 35.0%
GGTAAAGTCGGAAACATATT+AGG - chr4_3:4197210-4197229 Msa0625190:CDS 35.0%
TTCTCAAGAGCTTCCTTATT+TGG + chr4_3:4197324-4197343 None:intergenic 35.0%
AAGGAAGCTCTTGAGAATAT+TGG - chr4_3:4197327-4197346 Msa0625190:CDS 35.0%
TTATATGAGCTAGTTCCACT+TGG + chr4_3:4197787-4197806 None:intergenic 35.0%
!! TCTTCAACTTGAGGTTTTGG+TGG + chr4_3:4194063-4194082 None:intergenic 40.0%
GAAGAAAAGGTTTAGAGGGA+AGG + chr4_3:4194205-4194224 None:intergenic 40.0%
AGGTGAAGGAAGAATTGAGT+TGG + chr4_3:4194310-4194329 None:intergenic 40.0%
TCAGAAGAGAAGATAGGTGA+AGG + chr4_3:4194324-4194343 None:intergenic 40.0%
! GGGAATGATTCCAAAAGTGT+TGG + chr4_3:4194388-4194407 None:intergenic 40.0%
CCACAAAACAACGTTGTTGA+GGG + chr4_3:4194437-4194456 None:intergenic 40.0%
ACCACAAAACAACGTTGTTG+AGG + chr4_3:4194438-4194457 None:intergenic 40.0%
ATCTTCTTGCATAGGTCTTC+TGG + chr4_3:4194639-4194658 None:intergenic 40.0%
AGCTTGAGATCTTCTTGCAT+AGG + chr4_3:4194647-4194666 None:intergenic 40.0%
GATGCTTTGATTGTGAGAAG+CGG - chr4_3:4194669-4194688 Msa0625190:CDS 40.0%
! ACAAGACAAGTGTTTGAAGC+AGG - chr4_3:4194702-4194721 Msa0625190:CDS 40.0%
! CAAGACAAGTGTTTGAAGCA+GGG - chr4_3:4194703-4194722 Msa0625190:CDS 40.0%
! TTGAAAGTTGTTGGTAGAGC+TGG - chr4_3:4194735-4194754 Msa0625190:CDS 40.0%
!! TGGTGTTGGGATTGATAATG+TGG - chr4_3:4194755-4194774 Msa0625190:CDS 40.0%
CTACAAGCTGCTACTGAATT+TGG - chr4_3:4194780-4194799 Msa0625190:CDS 40.0%
GCAGCAATAGTATTAGCAGT+AGG + chr4_3:4194825-4194844 None:intergenic 40.0%
TATGGCTCGTAATGTTTCTC+AGG - chr4_3:4194875-4194894 Msa0625190:CDS 40.0%
!! ATGTACCATACCGGCTTTAA+GGG + chr4_3:4194910-4194929 None:intergenic 40.0%
! TTTTTGCAGGAAAATGGCTG+AGG - chr4_3:4195424-4195443 Msa0625190:intron 40.0%
! CAAGTATGTTGGAGTGTCTA+TGG - chr4_3:4195449-4195468 Msa0625190:intron 40.0%
! TATGTTGGAGTGTCTATGGT+TGG - chr4_3:4195453-4195472 Msa0625190:intron 40.0%
! ATGTTGGAGTGTCTATGGTT+GGG - chr4_3:4195454-4195473 Msa0625190:intron 40.0%
TGGAAAAGTTGGATCTGAAG+TGG - chr4_3:4195500-4195519 Msa0625190:CDS 40.0%
GTGAAGTGAGATGAAATCAG+CGG + chr4_3:4195640-4195659 None:intergenic 40.0%
TTGTTAGTAGTTGGAGTGAG+AGG + chr4_3:4195666-4195685 None:intergenic 40.0%
AGGATCATCAATGTTGCTAG+AGG - chr4_3:4195729-4195748 Msa0625190:CDS 40.0%
ATCATCAATGTTGCTAGAGG+TGG - chr4_3:4195732-4195751 Msa0625190:CDS 40.0%
!! TGATAGTGGAATTGTTGCTC+AGG - chr4_3:4195788-4195807 Msa0625190:intron 40.0%
CTAGCAATGTTCAACTCGTT+TGG - chr4_3:4195868-4195887 Msa0625190:intron 40.0%
TTCAACTCGTTTGGAAATCG+TGG - chr4_3:4195877-4195896 Msa0625190:intron 40.0%
TGGAAATCGCAATTGCATAG+TGG - chr4_3:4195951-4195970 Msa0625190:intron 40.0%
ACTAACTTACTGTCTTTGGC+TGG + chr4_3:4196195-4196214 None:intergenic 40.0%
TGTGGCTATTGAAATAGCAG+AGG - chr4_3:4196383-4196402 Msa0625190:CDS 40.0%
! GCATAGTTTAATTTCCGTGG+AGG + chr4_3:4196537-4196556 None:intergenic 40.0%
GAGCCAATTCTGATAATACC+TGG + chr4_3:4196720-4196739 None:intergenic 40.0%
! TGTATCTGGATTGACTCAAC+AGG + chr4_3:4197012-4197031 None:intergenic 40.0%
!! ACTGGTCAGATAAGCATTGA+CGG - chr4_3:4197075-4197094 Msa0625190:CDS 40.0%
CAAAAGATCCCACACATGTA+AGG + chr4_3:4197125-4197144 None:intergenic 40.0%
! CTTACATGTGTGGGATCTTT+TGG - chr4_3:4197123-4197142 Msa0625190:CDS 40.0%
! AATGTGAGCTTTATGAGCGT+CGG - chr4_3:4197246-4197265 Msa0625190:CDS 40.0%
!! AAGAAAGCGCTTATGGCTAT+TGG - chr4_3:4197285-4197304 Msa0625190:CDS 40.0%
AACACAAACTCCTCAATAGC+AGG + chr4_3:4197360-4197379 None:intergenic 40.0%
GCTTGAGAAAAGTGATAGCT+TGG - chr4_3:4197510-4197529 Msa0625190:CDS 40.0%
!! CAACTTGAGGTTTTGGTGGT+TGG + chr4_3:4194059-4194078 None:intergenic 45.0%
!! CCCTCAACAACGTTGTTTTG+TGG - chr4_3:4194434-4194453 Msa0625190:three_prime_UTR 45.0%
ATCTTGGTCTCCGAGAAACT+CGG - chr4_3:4194552-4194571 Msa0625190:CDS 45.0%
! CAAGTGTTTGAAGCAGGGAA+AGG - chr4_3:4194708-4194727 Msa0625190:CDS 45.0%
! TTGTTGGTAGAGCTGGTGTT+GGG - chr4_3:4194742-4194761 Msa0625190:CDS 45.0%
ACTATTGCTGCTGCTGAACA+TGG - chr4_3:4194834-4194853 Msa0625190:CDS 45.0%
CTATTGCTGCTGCTGAACAT+GGG - chr4_3:4194835-4194854 Msa0625190:CDS 45.0%
GATTGCTCTTCTTGCTGCTA+TGG - chr4_3:4194857-4194876 Msa0625190:CDS 45.0%
!! CATGTACCATACCGGCTTTA+AGG + chr4_3:4194911-4194930 None:intergenic 45.0%
TGGCTGAGGAACAAGTATGT+TGG - chr4_3:4195438-4195457 Msa0625190:intron 45.0%
! AAGTTGGATCTGAAGTGGCA+AGG - chr4_3:4195505-4195524 Msa0625190:CDS 45.0%
CTCTATCAGCTGGAGCATAA+GGG + chr4_3:4195569-4195588 None:intergenic 45.0%
! CTAAGATGAAGAAGGGTGTG+AGG - chr4_3:4195709-4195728 Msa0625190:CDS 45.0%
CACGAAGTCGCGATTAACAA+TGG - chr4_3:4196009-4196028 Msa0625190:intron 45.0%
AGCTCTTGATGTGTTCACTG+AGG - chr4_3:4196164-4196183 Msa0625190:CDS 45.0%
AACTTACTGTCTTTGGCTGG+AGG + chr4_3:4196192-4196211 None:intergenic 45.0%
GTGATTGCTACTCCTCATCT+TGG - chr4_3:4196228-4196247 Msa0625190:CDS 45.0%
TTTGACTCAATAGGAGGGTG+TGG - chr4_3:4196365-4196384 Msa0625190:CDS 45.0%
GAAATAGCAGAGGCTGTTGT+TGG - chr4_3:4196393-4196412 Msa0625190:CDS 45.0%
GCTGTTGTTGGTGCATTGAA+TGG - chr4_3:4196405-4196424 Msa0625190:CDS 45.0%
AACTGCTGTCAATGCTCCTA+TGG - chr4_3:4196440-4196459 Msa0625190:CDS 45.0%
TTTACCTCAGGAGCAACCAT+AGG + chr4_3:4196459-4196478 None:intergenic 45.0%
! ATTGGCTCCATATGTTGTGC+TGG - chr4_3:4196732-4196751 Msa0625190:intron 45.0%
TTCTCAGCCAGCACAACATA+TGG + chr4_3:4196742-4196761 None:intergenic 45.0%
! TTAGCTGTGCAGTTGGTATC+CGG - chr4_3:4196772-4196791 Msa0625190:intron 45.0%
AGATTGGATTCCACTTCCTC+CGG + chr4_3:4196794-4196813 None:intergenic 45.0%
AAGTCTGGTGTCTAGGTCAT+CGG + chr4_3:4196848-4196867 None:intergenic 45.0%
CTTCGAGCCATGATCACAAA+AGG - chr4_3:4196868-4196887 Msa0625190:intron 45.0%
CATAAGCGAGGAAAGAGTAG+CGG - chr4_3:4196966-4196985 Msa0625190:intron 45.0%
! ATTGACTCAACAGGTAGCTC+AGG + chr4_3:4197003-4197022 None:intergenic 45.0%
TGATACAGCACTCGCGAATT+TGG + chr4_3:4197052-4197071 None:intergenic 45.0%
TACACCACACCTTACATGTG+TGG - chr4_3:4197113-4197132 Msa0625190:CDS 45.0%
ACACCACACCTTACATGTGT+GGG - chr4_3:4197114-4197133 Msa0625190:CDS 45.0%
! ATGTGTGGGATCTTTTGGTG+TGG - chr4_3:4197128-4197147 Msa0625190:CDS 45.0%
GTGTGGATGTGAGCTTAGAA+GGG - chr4_3:4197145-4197164 Msa0625190:CDS 45.0%
CCTGGGATGATTGGTAAAGT+CGG - chr4_3:4197198-4197217 Msa0625190:CDS 45.0%
CGTCGATGAAGAGCCAAATA+AGG - chr4_3:4197308-4197327 Msa0625190:CDS 45.0%
AATGTGATGCACCAACCAAG+TGG - chr4_3:4197769-4197788 Msa0625190:five_prime_UTR 45.0%
ATGAGCTAGTTCCACTTGGT+TGG + chr4_3:4197783-4197802 None:intergenic 45.0%
!! CTTGAGGTTTTGGTGGTTGG+TGG + chr4_3:4194056-4194075 None:intergenic 50.0%
!! GGAGTTGATGTGCGGCAAAT+GGG + chr4_3:4194093-4194112 None:intergenic 50.0%
!! AGGAGTTGATGTGCGGCAAA+TGG + chr4_3:4194094-4194113 None:intergenic 50.0%
TTCTCGGAGACCAAGATCGT+TGG + chr4_3:4194549-4194568 None:intergenic 50.0%
! GTTGTTGGTAGAGCTGGTGT+TGG - chr4_3:4194741-4194760 Msa0625190:CDS 50.0%
GCTGATGCTTCCCTTAAAGC+CGG - chr4_3:4194897-4194916 Msa0625190:CDS 50.0%
TGCTTCCCTTAAAGCCGGTA+TGG - chr4_3:4194902-4194921 Msa0625190:CDS 50.0%
GCAAGGCGTGCAAAAGGATT+AGG - chr4_3:4195522-4195541 Msa0625190:CDS 50.0%
GCTCTATCAGCTGGAGCATA+AGG + chr4_3:4195570-4195589 None:intergenic 50.0%
! AACCTGTGCTTCTTTGGTGC+TGG + chr4_3:4196256-4196275 None:intergenic 50.0%
AAGACCATAGTCAGCCTCCA+CGG - chr4_3:4196520-4196539 Msa0625190:intron 50.0%
ATTTCCGTGGAGGCTGACTA+TGG + chr4_3:4196527-4196546 None:intergenic 50.0%
! AGGAAGGTTAGCTGTGCAGT+TGG - chr4_3:4196765-4196784 Msa0625190:intron 50.0%
AGTCTGGTGTCTAGGTCATC+GGG + chr4_3:4196847-4196866 None:intergenic 50.0%
CTCGAAGAAGTCTGGTGTCT+AGG + chr4_3:4196855-4196874 None:intergenic 50.0%
GATCATGGCTCGAAGAAGTC+TGG + chr4_3:4196863-4196882 None:intergenic 50.0%
AAAAGGCCTTCGCATAAGCG+AGG - chr4_3:4196954-4196973 Msa0625190:intron 50.0%
CTCTTTCCTCGCTTATGCGA+AGG + chr4_3:4196963-4196982 None:intergenic 50.0%
CGCGAATTTGGACTCCACAT+TGG + chr4_3:4197040-4197059 None:intergenic 50.0%
GATCCCACACATGTAAGGTG+TGG + chr4_3:4197120-4197139 None:intergenic 50.0%
GGTGTGGATGTGAGCTTAGA+AGG - chr4_3:4197144-4197163 Msa0625190:CDS 50.0%
ACTGATCAGCCTGGGATGAT+TGG - chr4_3:4197189-4197208 Msa0625190:CDS 50.0%
CCGACTTTACCAATCATCCC+AGG + chr4_3:4197201-4197220 None:intergenic 50.0%
!! GCGTAGGAAGAAAGCGCTTA+TGG - chr4_3:4197278-4197297 Msa0625190:CDS 50.0%
!!! GAGGTTTTGGTGGTTGGTGG+AGG + chr4_3:4194053-4194072 None:intergenic 55.0%
TCCGAGAAACTCGGAGAAGC+AGG - chr4_3:4194561-4194580 Msa0625190:CDS 55.0%
GCCTGCTTCTCCGAGTTTCT+CGG + chr4_3:4194565-4194584 None:intergenic 55.0%
GAAGTGGCAAGGCGTGCAAA+AGG - chr4_3:4195516-4195535 Msa0625190:CDS 55.0%
ACAGCACGTGCTCTATCAGC+TGG + chr4_3:4195579-4195598 None:intergenic 55.0%
GCTGATAGAGCACGTGCTGT+TGG - chr4_3:4195579-4195598 Msa0625190:intron 55.0%
!! TTGGTGCTGGCTCCAAGATG+AGG + chr4_3:4196243-4196262 None:intergenic 55.0%
! AGCCAGCACCAAAGAAGCAC+AGG - chr4_3:4196251-4196270 Msa0625190:CDS 55.0%
TGCTCCTATGGTTGCTCCTG+AGG - chr4_3:4196452-4196471 Msa0625190:CDS 55.0%
!! GTTGTGCTGGCTGAGAAGCT+AGG - chr4_3:4196745-4196764 Msa0625190:intron 55.0%
! TGCTGGCTGAGAAGCTAGGA+AGG - chr4_3:4196749-4196768 Msa0625190:intron 55.0%
! CAGTTGGTATCCGGAGGAAG+TGG - chr4_3:4196781-4196800 Msa0625190:intron 55.0%
AAGTGGTTTACCGATCGGCC+AGG - chr4_3:4196818-4196837 Msa0625190:intron 55.0%
AGTGGTTTACCGATCGGCCA+GGG - chr4_3:4196819-4196838 Msa0625190:intron 55.0%
! GCGAGTGCTGTATCAGAGAC+TGG - chr4_3:4197057-4197076 Msa0625190:CDS 55.0%
TGCAGACAGACTGATCAGCC+TGG - chr4_3:4197180-4197199 Msa0625190:CDS 55.0%
GCAGACAGACTGATCAGCCT+GGG - chr4_3:4197181-4197200 Msa0625190:CDS 55.0%
TGGAGCTGTGCCTGCTATTG+AGG - chr4_3:4197347-4197366 Msa0625190:CDS 55.0%
! GCTGTGCAGTTGGTATCCGG+AGG - chr4_3:4196775-4196794 Msa0625190:intron 60.0%
GTGGTTTACCGATCGGCCAG+GGG - chr4_3:4196820-4196839 Msa0625190:intron 60.0%
GCGTCGGAAGAACATCGCGT+AGG - chr4_3:4197262-4197281 Msa0625190:CDS 60.0%
GTCTAGGTCATCGGGACCCC+TGG + chr4_3:4196839-4196858 None:intergenic 65.0%
CATCGGGACCCCTGGCCGAT+CGG + chr4_3:4196831-4196850 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 4194044 4197900 4194044 ID=Msa0625190;Name=Msa0625190
chr4_3 mRNA 4194044 4197900 4194044 ID=Msa0625190-mRNA-1;Parent=Msa0625190;Name=Msa0625190-mRNA-1;_AED=0.03;_eAED=0.03;_QI=244|1|1|1|1|1|5|508|628
chr4_3 exon 4194044 4195223 4194044 ID=Msa0625190-mRNA-1:exon:1064;Parent=Msa0625190-mRNA-1
chr4_3 exon 4195471 4195566 4195471 ID=Msa0625190-mRNA-1:exon:1063;Parent=Msa0625190-mRNA-1
chr4_3 exon 4195672 4195782 4195672 ID=Msa0625190-mRNA-1:exon:1062;Parent=Msa0625190-mRNA-1
chr4_3 exon 4196135 4196511 4196135 ID=Msa0625190-mRNA-1:exon:1061;Parent=Msa0625190-mRNA-1
chr4_3 exon 4197026 4197900 4197026 ID=Msa0625190-mRNA-1:exon:1060;Parent=Msa0625190-mRNA-1
chr4_3 five_prime_UTR 4197657 4197900 4197657 ID=Msa0625190-mRNA-1:five_prime_utr;Parent=Msa0625190-mRNA-1
chr4_3 CDS 4197026 4197656 4197026 ID=Msa0625190-mRNA-1:cds;Parent=Msa0625190-mRNA-1
chr4_3 CDS 4196135 4196511 4196135 ID=Msa0625190-mRNA-1:cds;Parent=Msa0625190-mRNA-1
chr4_3 CDS 4195672 4195782 4195672 ID=Msa0625190-mRNA-1:cds;Parent=Msa0625190-mRNA-1
chr4_3 CDS 4195471 4195566 4195471 ID=Msa0625190-mRNA-1:cds;Parent=Msa0625190-mRNA-1
chr4_3 CDS 4194552 4195223 4194552 ID=Msa0625190-mRNA-1:cds;Parent=Msa0625190-mRNA-1
chr4_3 three_prime_UTR 4194044 4194551 4194044 ID=Msa0625190-mRNA-1:three_prime_utr;Parent=Msa0625190-mRNA-1
Gene Sequence

>Msa0625190

ATGTCTTCCTCTTCTTGTACCAACTCAATTCTTCCTTCACCTATCTTCTCTTCTGAAACCAAATCTTCAAAATCCTCTAATCTCTCATTCCTTAACTCCAACACTTTTGGAATCATTCCCAACAACATTAAACTCTCTCATGCTAACCCTCAACAACGTTGTTTTGTGGTCAACAGTGTTTTAAAAACAGTTGACCAAACAAAACAAACAACTCAAACCAACAACGTTGTTTCTGTTGTTAACGATGAAAATGAAAAACCAACGATCTTGGTCTCCGAGAAACTCGGAGAAGCAGGCTTACAAGTTTTAAGACAATTAGGACATGTGGAATGTGCTTATGATCTTTCACCAGAAGACCTATGCAAGAAGATCTCAAGCTGTGATGCTTTGATTGTGAGAAGCGGTACGAAAGTCACAAGACAAGTGTTTGAAGCAGGGAAAGGAAAGTTGAAAGTTGTTGGTAGAGCTGGTGTTGGGATTGATAATGTGGATCTACAAGCTGCTACTGAATTTGGTTGTCTTGTTGTGAATGCTCCTACTGCTAATACTATTGCTGCTGCTGAACATGGGATTGCTCTTCTTGCTGCTATGGCTCGTAATGTTTCTCAGGCTGATGCTTCCCTTAAAGCCGGAAAATGGCTGAGGAACAAGTATGTTGGAGTGTCTATGGTTGGGAAAACATTAGCAATAATGGGATTTGGAAAAGTTGGATCTGAAGTGGCAAGGCGTGCAAAAGGATTAGGAATGAATGTGATTGCTCATGACCCTTATGCTCCAGCTGATAGAGCACGTGCTGTTGGTGTCGAATTAGTTTCATTTGATCAAGCAATCTCAACCGCTGATTTCATCTCACTTCACATGCCTCTCACTCCAACTACTAACAAAGTCTTCAATGACAACACTTTTGCTAAGATGAAGAAGGGTGTGAGGATCATCAATGTTGCTAGAGGTGGTGTTATTGATGAAGATGCTTTAGTCAAAGCTCTTGATAGTGGAATTGTTGCTCAGGCAGCTCTTGATGTGTTCACTGAGGAGCCTCCAGCCAAAGACAGTAAGTTAGTGCAACATGAGAATGTGATTGCTACTCCTCATCTTGGAGCCAGCACCAAAGAAGCACAGGAGGGTGTGGCTATTGAAATAGCAGAGGCTGTTGTTGGTGCATTGAATGGTGAACTTTCAGCAACTGCTGTCAATGCTCCTATGGTTGCTCCTGAGGTATTATCAGAATTGGCTCCATATGTTGTGCTGGCTGAGAAGCTAGGAAGGTTAGCTGTGCAGTTGGTATCCGGAGGAAGTGGAATCCAATCTGTAAAAGTGGTTTACCGATCGGCCAGGGGTCCCGATGACCTAGACACCAGACTTCTTCGAGCCATGATCACAAAAGGCATTATTGAACCAATATCAAACACAATTGTCAACCTTGTAAATGCTGATTACATCGCAAAGCAAAAAGGCCTTCGCATAAGCGAGGAAAGAGTAGCGGTTGATGCGTCTCCTGAGCTACCTGTTGAGTCAATCCAGATACAAATATCCAATGTGGAGTCCAAATTCGCGAGTGCTGTATCAGAGACTGGTCAGATAAGCATTGACGGAAAAGTGAAGTATGGTACACCACACCTTACATGTGTGGGATCTTTTGGTGTGGATGTGAGCTTAGAAGGGAATCTGATTTTGTGCAGACAGACTGATCAGCCTGGGATGATTGGTAAAGTCGGAAACATATTAGGCGAGAAAAATGTGAATGTGAGCTTTATGAGCGTCGGAAGAACATCGCGTAGGAAGAAAGCGCTTATGGCTATTGGCGTCGATGAAGAGCCAAATAAGGAAGCTCTTGAGAATATTGGAGCTGTGCCTGCTATTGAGGAGTTTGTGTTTCTCAAGCTTTAA
Protein sequence

>Msa0625190

MSSSSCTNSILPSPIFSSETKSSKSSNLSFLNSNTFGIIPNNIKLSHANPQQRCFVVNSVLKTVDQTKQTTQTNNVVSVVNDENEKPTILVSEKLGEAGLQVLRQLGHVECAYDLSPEDLCKKISSCDALIVRSGTKVTRQVFEAGKGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLAAMARNVSQADASLKAGKWLRNKYVGVSMVGKTLAIMGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARAVGVELVSFDQAISTADFISLHMPLTPTTNKVFNDNTFAKMKKGVRIINVARGGVIDEDALVKALDSGIVAQAALDVFTEEPPAKDSKLVQHENVIATPHLGASTKEAQEGVAIEIAEAVVGALNGELSATAVNAPMVAPEVLSELAPYVVLAEKLGRLAVQLVSGGSGIQSVKVVYRSARGPDDLDTRLLRAMITKGIIEPISNTIVNLVNADYIAKQKGLRISEERVAVDASPELPVESIQIQISNVESKFASAVSETGQISIDGKVKYGTPHLTCVGSFGVDVSLEGNLILCRQTDQPGMIGKVGNILGEKNVNVSFMSVGRTSRRKKALMAIGVDEEPNKEALENIGAVPAIEEFVFLKL*