Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814710 | XP_003614458.1 | 94.531 | 256 | 10 | 1 | 1 | 256 | 1 | 252 | 1.23e-174 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814710 | sp|Q75KD7|AOC_ORYSJ | 69.565 | 207 | 60 | 2 | 51 | 256 | 36 | 240 | 1.07e-105 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814710 | Q711Q9 | 94.531 | 256 | 10 | 1 | 1 | 256 | 1 | 252 | 5.89e-175 | 491 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002460 | Msa0814710 | 0.803504 | 3.378142e-49 | -8.615850e-47 |
| Msa0002710 | Msa0814710 | 0.820042 | 8.450681e-53 | -8.615850e-47 |
| Msa0003400 | Msa0814710 | 0.829894 | 3.986198e-55 | -8.615850e-47 |
| Msa0007990 | Msa0814710 | 0.831033 | 2.099477e-55 | -8.615850e-47 |
| Msa0022550 | Msa0814710 | 0.819316 | 1.238160e-52 | -8.615850e-47 |
| Msa0022750 | Msa0814710 | -0.807314 | 5.368956e-50 | -8.615850e-47 |
| Msa0029880 | Msa0814710 | 0.803563 | 3.284246e-49 | -8.615850e-47 |
| Msa0042550 | Msa0814710 | 0.834309 | 3.230082e-56 | -8.615850e-47 |
| Msa0050820 | Msa0814710 | 0.838239 | 3.236384e-57 | -8.615850e-47 |
| Msa0054820 | Msa0814710 | 0.818172 | 2.251484e-52 | -8.615850e-47 |
| Msa0100160 | Msa0814710 | 0.813492 | 2.490479e-51 | -8.615850e-47 |
| Msa0103250 | Msa0814710 | 0.829550 | 4.834752e-55 | -8.615850e-47 |
| Msa0106620 | Msa0814710 | 0.801609 | 8.305490e-49 | -8.615850e-47 |
| Msa0613710 | Msa0814710 | 0.816915 | 4.322517e-52 | -8.615850e-47 |
| Msa0622170 | Msa0814710 | -0.833301 | 5.770000e-56 | -8.615850e-47 |
| Msa0626720 | Msa0814710 | 0.813277 | 2.776668e-51 | -8.615850e-47 |
| Msa0666620 | Msa0814710 | 0.809445 | 1.885181e-50 | -8.615850e-47 |
| Msa0667780 | Msa0814710 | 0.803550 | 3.305193e-49 | -8.615850e-47 |
| Msa0667800 | Msa0814710 | 0.805817 | 1.111685e-49 | -8.615850e-47 |
| Msa0680660 | Msa0814710 | 0.817256 | 3.623405e-52 | -8.615850e-47 |
| Msa0683980 | Msa0814710 | 0.806534 | 7.852774e-50 | -8.615850e-47 |
| Msa0698290 | Msa0814710 | 0.801090 | 1.060770e-48 | -8.615850e-47 |
| Msa0704210 | Msa0814710 | 0.915017 | 9.691517e-85 | -8.615850e-47 |
| Msa0710270 | Msa0814710 | 0.811223 | 7.794372e-51 | -8.615850e-47 |
| Msa0711830 | Msa0814710 | 0.804469 | 2.128185e-49 | -8.615850e-47 |
| Msa0717020 | Msa0814710 | 0.813144 | 2.969109e-51 | -8.615850e-47 |
| Msa0724000 | Msa0814710 | 0.805224 | 1.480258e-49 | -8.615850e-47 |
| Msa0750240 | Msa0814710 | 0.810914 | 9.094238e-51 | -8.615850e-47 |
| Msa0751260 | Msa0814710 | 0.823980 | 1.033827e-53 | -8.615850e-47 |
| Msa0753720 | Msa0814710 | 0.811375 | 7.226008e-51 | -8.615850e-47 |
| Msa0795070 | Msa0814710 | 0.839215 | 1.810188e-57 | -8.615850e-47 |
| Msa0814710 | Msa0836850 | 0.802680 | 5.000793e-49 | -8.615850e-47 |
| Msa0814710 | Msa0848750 | 0.916622 | 1.427628e-85 | -8.615850e-47 |
| Msa0814710 | Msa0857220 | 0.805625 | 1.219307e-49 | -8.615850e-47 |
| Msa0814710 | Msa0903990 | 0.823384 | 1.426238e-53 | -8.615850e-47 |
| Msa0814710 | Msa0936390 | 0.826395 | 2.777230e-54 | -8.615850e-47 |
| Msa0814710 | Msa0975940 | 0.809563 | 1.779169e-50 | -8.615850e-47 |
| Msa0814710 | Msa0984690 | 0.815157 | 1.067337e-51 | -8.615850e-47 |
| Msa0814710 | Msa1019000 | 0.807066 | 6.059564e-50 | -8.615850e-47 |
| Msa0814710 | Msa1022820 | 0.819985 | 8.709150e-53 | -8.615850e-47 |
| Msa0814710 | Msa1034500 | 0.805741 | 1.152885e-49 | -8.615850e-47 |
| Msa0814710 | Msa1036710 | -0.801020 | 1.096578e-48 | -8.615850e-47 |
| Msa0814710 | Msa1038080 | 0.826624 | 2.448873e-54 | -8.615850e-47 |
| Msa0814710 | Msa1039710 | -0.842237 | 2.923862e-58 | -8.615850e-47 |
| Msa0814710 | Msa1053200 | 0.823324 | 1.472397e-53 | -8.615850e-47 |
| Msa0814710 | Msa1068570 | 0.809954 | 1.465615e-50 | -8.615850e-47 |
| Msa0814710 | Msa1068580 | 0.804400 | 2.199625e-49 | -8.615850e-47 |
| Msa0814710 | Msa1088410 | 0.803125 | 4.046818e-49 | -8.615850e-47 |
| Msa0814710 | Msa1118760 | 0.821491 | 3.925632e-53 | -8.615850e-47 |
| Msa0814710 | Msa1122520 | 0.802216 | 6.231542e-49 | -8.615850e-47 |
| Msa0814710 | Msa1127770 | 0.818636 | 1.767389e-52 | -8.615850e-47 |
| Msa0814710 | Msa1145810 | 0.803468 | 3.436361e-49 | -8.615850e-47 |
| Msa0814710 | Msa1156570 | 0.823258 | 1.525768e-53 | -8.615850e-47 |
| Msa0814710 | Msa1176050 | 0.802990 | 4.314807e-49 | -8.615850e-47 |
| Msa0814710 | Msa1227150 | 0.833029 | 6.741929e-56 | -8.615850e-47 |
| Msa0814710 | Msa1234910 | 0.804460 | 2.136966e-49 | -8.615850e-47 |
| Msa0814710 | Msa1243870 | 0.801426 | 9.055855e-49 | -8.615850e-47 |
| Msa0814710 | Msa1264420 | 0.825777 | 3.896147e-54 | -8.615850e-47 |
| Msa0814710 | Msa1304890 | -0.835475 | 1.642606e-56 | -8.615850e-47 |
| Msa0814710 | Msa1321050 | 0.839822 | 1.258758e-57 | -8.615850e-47 |
| Msa0814710 | Msa1341520 | 0.816246 | 6.103332e-52 | -8.615850e-47 |
| Msa0814710 | Msa1343250 | 0.806404 | 8.364036e-50 | -8.615850e-47 |
| Msa0814710 | Msa1345810 | 0.813865 | 2.061371e-51 | -8.615850e-47 |
| Msa0814710 | Msa1365350 | 0.800761 | 1.238144e-48 | -8.615850e-47 |
| Msa0814710 | Msa1368430 | 0.803120 | 4.057278e-49 | -8.615850e-47 |
| Msa0814710 | Msa1372150 | 0.825228 | 5.256210e-54 | -8.615850e-47 |
| Msa0814710 | Msa1383230 | 0.802430 | 5.630924e-49 | -8.615850e-47 |
| Msa0814710 | Msa1394380 | 0.824056 | 9.924576e-54 | -8.615850e-47 |
| Msa0814710 | Msa1408620 | -0.802969 | 4.358411e-49 | -8.615850e-47 |
| Msa0814710 | Msa1410420 | 0.813319 | 2.718768e-51 | -8.615850e-47 |
| Msa0814710 | Msa1418240 | 0.805137 | 1.543581e-49 | -8.615850e-47 |
| Msa0814710 | Msa1446780 | 0.827074 | 1.912244e-54 | -8.615850e-47 |
| Msa0814710 | Msa1448560 | 0.817035 | 4.063182e-52 | -8.615850e-47 |
| Msa0814710 | Msa1454530 | 0.818808 | 1.616028e-52 | -8.615850e-47 |
| Msa0814710 | Msa1459050 | 0.826670 | 2.388624e-54 | -8.615850e-47 |
| Msa0814710 | Msa1463900 | 0.810001 | 1.432049e-50 | -8.615850e-47 |
| Msa0146540 | Msa0814710 | 0.830207 | 3.344835e-55 | -8.615850e-47 |
| Msa0149300 | Msa0814710 | 0.832978 | 6.944403e-56 | -8.615850e-47 |
| Msa0164080 | Msa0814710 | 0.802359 | 5.823358e-49 | -8.615850e-47 |
| Msa0173390 | Msa0814710 | 0.807332 | 5.322415e-50 | -8.615850e-47 |
| Msa0178510 | Msa0814710 | 0.825093 | 5.655850e-54 | -8.615850e-47 |
| Msa0187030 | Msa0814710 | 0.848164 | 7.298564e-60 | -8.615850e-47 |
| Msa0188150 | Msa0814710 | 0.807604 | 4.660213e-50 | -8.615850e-47 |
| Msa0190970 | Msa0814710 | 0.815019 | 1.145551e-51 | -8.615850e-47 |
| Msa0202090 | Msa0814710 | 0.805212 | 1.488576e-49 | -8.615850e-47 |
| Msa0205010 | Msa0814710 | 0.809721 | 1.644815e-50 | -8.615850e-47 |
| Msa0225220 | Msa0814710 | 0.821347 | 4.236944e-53 | -8.615850e-47 |
| Msa0225640 | Msa0814710 | 0.830116 | 3.520173e-55 | -8.615850e-47 |
| Msa0389910 | Msa0814710 | 0.830135 | 3.483373e-55 | -8.615850e-47 |
| Msa0397820 | Msa0814710 | 0.810865 | 9.320566e-51 | -8.615850e-47 |
| Msa0430640 | Msa0814710 | 0.845613 | 3.640896e-59 | -8.615850e-47 |
| Msa0473330 | Msa0814710 | 0.808216 | 3.453299e-50 | -8.615850e-47 |
| Msa0243250 | Msa0814710 | 0.819281 | 1.261448e-52 | -8.615850e-47 |
| Msa0308460 | Msa0814710 | 0.805777 | 1.133389e-49 | -8.615850e-47 |
| Msa0311610 | Msa0814710 | 0.820021 | 8.548967e-53 | -8.615850e-47 |
| Msa0342010 | Msa0814710 | 0.828725 | 7.662620e-55 | -8.615850e-47 |
| Msa0358890 | Msa0814710 | 0.809549 | 1.791146e-50 | -8.615850e-47 |
| Msa0485240 | Msa0814710 | 0.807085 | 6.004028e-50 | -8.615850e-47 |
| Msa0526070 | Msa0814710 | -0.838511 | 2.753363e-57 | -8.615850e-47 |
| Msa0544660 | Msa0814710 | 0.839360 | 1.660378e-57 | -8.615850e-47 |
| Msa0553240 | Msa0814710 | 0.807344 | 5.291296e-50 | -8.615850e-47 |
| Msa0559500 | Msa0814710 | 0.831512 | 1.600675e-55 | -8.615850e-47 |
| Msa0574390 | Msa0814710 | 0.804408 | 2.191913e-49 | -8.615850e-47 |
| Msa0579660 | Msa0814710 | 0.834698 | 2.578877e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814710 | MtrunA17_Chr5g0422541 | 94.531 | 256 | 10 | 1 | 1 | 256 | 1 | 252 | 1.13e-178 | 491 |
| Msa0814710 | MtrunA17_Chr7g0220911 | 66.087 | 230 | 63 | 3 | 40 | 256 | 23 | 250 | 2.95e-105 | 305 |
| Msa0814710 | MtrunA17_Chr4g0034431 | 73.797 | 187 | 49 | 0 | 70 | 256 | 71 | 257 | 1.17e-102 | 298 |
| Msa0814710 | MtrunA17_Chr6g0456971 | 72.989 | 174 | 46 | 1 | 84 | 256 | 96 | 269 | 4.01e-92 | 272 |
| Msa0814710 | MtrunA17_Chr6g0456981 | 73.780 | 164 | 43 | 0 | 70 | 233 | 63 | 226 | 2.64e-90 | 266 |
| Msa0814710 | MtrunA17_Chr8g0364271 | 53.247 | 77 | 24 | 1 | 60 | 124 | 36 | 112 | 4.97e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0814710 | AT3G25780.1 | 67.010 | 194 | 61 | 3 | 65 | 256 | 66 | 258 | 1.35e-91 | 271 |
| Msa0814710 | AT1G13280.1 | 64.390 | 205 | 70 | 3 | 55 | 256 | 50 | 254 | 4.14e-91 | 270 |
| Msa0814710 | AT3G25770.1 | 66.129 | 186 | 62 | 1 | 72 | 256 | 68 | 253 | 2.40e-88 | 263 |
| Msa0814710 | AT3G25760.1 | 67.222 | 180 | 58 | 1 | 78 | 256 | 75 | 254 | 1.99e-86 | 258 |
Find 57 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATCTTTGAAGGTGTTTA+TGG | 0.136144 | 5_3:-47004604 | Msa0814710:CDS |
| TGTATTAGGTTAAGCATAAT+TGG | 0.189150 | 5_3:-47004276 | Msa0814710:three_prime_UTR |
| TTAGAAATTATTTATGTATT+AGG | 0.204157 | 5_3:-47004290 | Msa0814710:three_prime_UTR |
| CCAGAATGAACCTGAGAAAA+AGG | 0.235777 | 5_3:-47004740 | Msa0814710:CDS |
| GACTTACCTGTCTTCCTTCC+TGG | 0.246598 | 5_3:-47004254 | Msa0814710:three_prime_UTR |
| AAAGTGTAGAACAGCTTAAA+TGG | 0.253758 | 5_3:+47004553 | None:intergenic |
| AAGATTCTTGATGCTGCTTT+TGG | 0.258177 | 5_3:+47005059 | None:intergenic |
| TGTATTCTTAGAACTTCTTT+TGG | 0.308042 | 5_3:+47005108 | None:intergenic |
| CTTGCTATAACAGGTGGTTC+TGG | 0.324436 | 5_3:-47004625 | Msa0814710:CDS |
| AGCTTCTACTTTGGAGACTA+TGG | 0.327242 | 5_3:-47004694 | Msa0814710:CDS |
| GCAATTTACAGCTTCTACTT+TGG | 0.342420 | 5_3:-47004703 | Msa0814710:CDS |
| GACACATATCTTGCTATAAC+AGG | 0.372471 | 5_3:-47004634 | Msa0814710:CDS |
| GTGTCTTGGTATGTCAAATA+AGG | 0.374471 | 5_3:+47004652 | None:intergenic |
| GATTTACCAGCTGATTTACT+TGG | 0.374651 | 5_3:-47004511 | Msa0814710:CDS |
| TTCATCATCATCACTTTCAA+TGG | 0.399743 | 5_3:-47005293 | Msa0814710:exon |
| GATGATCAGTTGGTGAAGTT+TGG | 0.404018 | 5_3:+47004415 | None:intergenic |
| CAAACTCTACTCAGGAAACT+TGG | 0.405570 | 5_3:-47004803 | Msa0814710:CDS |
| AAAAGGTTAGGTATAACTTC+AGG | 0.428075 | 5_3:-47004778 | Msa0814710:CDS |
| AACTTGAGTGGGAAAGGTTG+AGG | 0.430249 | 5_3:+47005239 | None:intergenic |
| ACATGTGGTGATGGATCAAC+AGG | 0.432460 | 5_3:+47004484 | None:intergenic |
| ACTTGAGTGGGAAAGGTTGA+GGG | 0.437386 | 5_3:+47005240 | None:intergenic |
| TTTGGTTGTAGATGCTTGCT+TGG | 0.457390 | 5_3:+47005126 | None:intergenic |
| GGTGGTTCTGGAATCTTTGA+AGG | 0.458254 | 5_3:-47004613 | Msa0814710:CDS |
| TGACTTAGTCTAAGGTATGC+AGG | 0.462035 | 5_3:+47004868 | None:intergenic |
| GAGCCTATGTAGTGGCTGGC+TGG | 0.470186 | 5_3:-47004117 | Msa0814710:three_prime_UTR |
| TCTAGCTGTAGCAGAGTTGT+TGG | 0.473906 | 5_3:-47004152 | Msa0814710:three_prime_UTR |
| GTTGGTGAAGTTTGGTAAAG+AGG | 0.474236 | 5_3:+47004423 | None:intergenic |
| TGAGGAAACTGGTAAAAGAA+AGG | 0.475591 | 5_3:+47005316 | None:intergenic |
| GAAATTTCTTCTACTTGTGA+AGG | 0.484237 | 5_3:+47005162 | None:intergenic |
| AGGTAGAACTTGAGTGGGAA+AGG | 0.488224 | 5_3:+47005233 | None:intergenic |
| AGGAGAGGTAGAACTTGAGT+GGG | 0.493281 | 5_3:+47005228 | None:intergenic |
| AAGTGTAGAACAGCTTAAAT+GGG | 0.495883 | 5_3:+47004554 | None:intergenic |
| GAGGAGAGGTAGAACTTGAG+TGG | 0.505438 | 5_3:+47005227 | None:intergenic |
| CATCAAGAATCTTCAAAGCC+AGG | 0.509124 | 5_3:-47005049 | Msa0814710:intron |
| GGCTCAGTAGCCTTAGCAGC+AGG | 0.509719 | 5_3:+47004451 | None:intergenic |
| GGCTTTCCAAGTAAATCAGC+TGG | 0.519357 | 5_3:+47004505 | None:intergenic |
| GTAGCCTTAGCAGCAGGAGA+TGG | 0.521268 | 5_3:+47004457 | None:intergenic |
| GAGTAGAGTTTGTTGCTGAA+TGG | 0.523603 | 5_3:+47004814 | None:intergenic |
| GCTATTGAAGAAGAATGCAT+TGG | 0.528323 | 5_3:+47005081 | None:intergenic |
| TGAACCATCTCCTGCTGCTA+AGG | 0.534209 | 5_3:-47004461 | Msa0814710:CDS |
| ATGATGATGAATGAGGAAAC+TGG | 0.534397 | 5_3:+47005305 | None:intergenic |
| TATGGTCATATATCAGTTCA+AGG | 0.534518 | 5_3:-47004676 | Msa0814710:CDS |
| TTATAGCAAGATATGTGTCT+TGG | 0.546680 | 5_3:+47004638 | None:intergenic |
| TTTAGAGCCTATGTAGTGGC+TGG | 0.547627 | 5_3:-47004121 | Msa0814710:three_prime_UTR |
| CAGCCAGCCAGCCACTACAT+AGG | 0.548951 | 5_3:+47004114 | None:intergenic |
| GAGGAAACTGGTAAAAGAAA+GGG | 0.549735 | 5_3:+47005317 | None:intergenic |
| AGAGACTAGAAGTAACTACT+TGG | 0.552750 | 5_3:+47005191 | None:intergenic |
| TTCAGCAACAAACTCTACTC+AGG | 0.581768 | 5_3:-47004811 | Msa0814710:CDS |
| GATGGTTCAACATGTGGTGA+TGG | 0.598259 | 5_3:+47004475 | None:intergenic |
| GAAAGTGATGATGATGAATG+AGG | 0.602804 | 5_3:+47005298 | None:intergenic |
| GCAGGAGATGGTTCAACATG+TGG | 0.619328 | 5_3:+47004469 | None:intergenic |
| ACATATCTTGCTATAACAGG+TGG | 0.657333 | 5_3:-47004631 | Msa0814710:CDS |
| TAGATTTAGAGCCTATGTAG+TGG | 0.668221 | 5_3:-47004125 | Msa0814710:three_prime_UTR |
| GAGATCAATGAACGTGACAG+AGG | 0.668577 | 5_3:-47004895 | Msa0814710:CDS |
| CTCTTGATGAGACTACAAAG+AGG | 0.687108 | 5_3:-47004191 | Msa0814710:three_prime_UTR |
| AAAGAGGTTGACAATTGACA+TGG | 0.692155 | 5_3:-47004175 | Msa0814710:three_prime_UTR |
| AAGTTTGGTAAAGAGGCATG+AGG | 0.695608 | 5_3:+47004430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAAATTATTTATGTATT+AGG | - | chr5_3:47005077-47005096 | Msa0814710:CDS | 10.0% |
| !! | TTAGAAATTATTTATGTATT+AGG | - | chr5_3:47005077-47005096 | Msa0814710:CDS | 10.0% |
| !!! | AACAACTACAATTTATTTTT+TGG | + | chr5_3:47005007-47005026 | None:intergenic | 15.0% |
| !!! | AACAACTACAATTTATTTTT+TGG | + | chr5_3:47005007-47005026 | None:intergenic | 15.0% |
| !! | TGTATTCTTAGAACTTCTTT+TGG | + | chr5_3:47004262-47004281 | None:intergenic | 25.0% |
| !!! | TTCTACACTTTTTACTTGAA+GGG | - | chr5_3:47004826-47004845 | Msa0814710:CDS | 25.0% |
| ! | TGTATTAGGTTAAGCATAAT+TGG | - | chr5_3:47005091-47005110 | Msa0814710:CDS | 25.0% |
| !! | TGTATTCTTAGAACTTCTTT+TGG | + | chr5_3:47004262-47004281 | None:intergenic | 25.0% |
| !!! | TTCTACACTTTTTACTTGAA+GGG | - | chr5_3:47004826-47004845 | Msa0814710:CDS | 25.0% |
| ! | TGTATTAGGTTAAGCATAAT+TGG | - | chr5_3:47005091-47005110 | Msa0814710:CDS | 25.0% |
| TTCATCATCATCACTTTCAA+TGG | - | chr5_3:47004074-47004093 | Msa0814710:three_prime_UTR | 30.0% | |
| ! | AATCATTTTCAGAGAACTCA+TGG | + | chr5_3:47004103-47004122 | None:intergenic | 30.0% |
| GAAATTTCTTCTACTTGTGA+AGG | + | chr5_3:47004208-47004227 | None:intergenic | 30.0% | |
| !!! | CTGATTTTTGACTTAGTCTA+AGG | + | chr5_3:47004510-47004529 | None:intergenic | 30.0% |
| AAAAGGTTAGGTATAACTTC+AGG | - | chr5_3:47004589-47004608 | Msa0814710:CDS | 30.0% | |
| TATGGTCATATATCAGTTCA+AGG | - | chr5_3:47004691-47004710 | Msa0814710:CDS | 30.0% | |
| TTATAGCAAGATATGTGTCT+TGG | + | chr5_3:47004732-47004751 | None:intergenic | 30.0% | |
| AAGTGTAGAACAGCTTAAAT+GGG | + | chr5_3:47004816-47004835 | None:intergenic | 30.0% | |
| AAAGTGTAGAACAGCTTAAA+TGG | + | chr5_3:47004817-47004836 | None:intergenic | 30.0% | |
| !! | GTTCTACACTTTTTACTTGA+AGG | - | chr5_3:47004825-47004844 | Msa0814710:CDS | 30.0% |
| !! | TGTAAATTGATTTTCCAGGA+AGG | + | chr5_3:47005130-47005149 | None:intergenic | 30.0% |
| !! | GTGATGTAAATTGATTTTCC+AGG | + | chr5_3:47005134-47005153 | None:intergenic | 30.0% |
| TTCATCATCATCACTTTCAA+TGG | - | chr5_3:47004074-47004093 | Msa0814710:three_prime_UTR | 30.0% | |
| ! | AATCATTTTCAGAGAACTCA+TGG | + | chr5_3:47004103-47004122 | None:intergenic | 30.0% |
| GAAATTTCTTCTACTTGTGA+AGG | + | chr5_3:47004208-47004227 | None:intergenic | 30.0% | |
| !!! | CTGATTTTTGACTTAGTCTA+AGG | + | chr5_3:47004510-47004529 | None:intergenic | 30.0% |
| AAAAGGTTAGGTATAACTTC+AGG | - | chr5_3:47004589-47004608 | Msa0814710:CDS | 30.0% | |
| TATGGTCATATATCAGTTCA+AGG | - | chr5_3:47004691-47004710 | Msa0814710:CDS | 30.0% | |
| TTATAGCAAGATATGTGTCT+TGG | + | chr5_3:47004732-47004751 | None:intergenic | 30.0% | |
| AAGTGTAGAACAGCTTAAAT+GGG | + | chr5_3:47004816-47004835 | None:intergenic | 30.0% | |
| AAAGTGTAGAACAGCTTAAA+TGG | + | chr5_3:47004817-47004836 | None:intergenic | 30.0% | |
| !! | GTTCTACACTTTTTACTTGA+AGG | - | chr5_3:47004825-47004844 | Msa0814710:CDS | 30.0% |
| !! | TGTAAATTGATTTTCCAGGA+AGG | + | chr5_3:47005130-47005149 | None:intergenic | 30.0% |
| !! | GTGATGTAAATTGATTTTCC+AGG | + | chr5_3:47005134-47005153 | None:intergenic | 30.0% |
| GTAAAAGAAAGGGTTGTTGA+AGG | + | chr5_3:47004043-47004062 | None:intergenic | 35.0% | |
| GAGGAAACTGGTAAAAGAAA+GGG | + | chr5_3:47004053-47004072 | None:intergenic | 35.0% | |
| TGAGGAAACTGGTAAAAGAA+AGG | + | chr5_3:47004054-47004073 | None:intergenic | 35.0% | |
| ! | ATGATGATGAATGAGGAAAC+TGG | + | chr5_3:47004065-47004084 | None:intergenic | 35.0% |
| ! | GAAAGTGATGATGATGAATG+AGG | + | chr5_3:47004072-47004091 | None:intergenic | 35.0% |
| !!! | ACTTGGTTTTGAGTTTGAAG+AGG | + | chr5_3:47004162-47004181 | None:intergenic | 35.0% |
| AGAGACTAGAAGTAACTACT+TGG | + | chr5_3:47004179-47004198 | None:intergenic | 35.0% | |
| GCTATTGAAGAAGAATGCAT+TGG | + | chr5_3:47004289-47004308 | None:intergenic | 35.0% | |
| !!! | AAGATTCTTGATGCTGCTTT+TGG | + | chr5_3:47004311-47004330 | None:intergenic | 35.0% |
| CAGAAAATGCTACTAGCAAA+GGG | + | chr5_3:47004370-47004389 | None:intergenic | 35.0% | |
| TCAGAAAATGCTACTAGCAA+AGG | + | chr5_3:47004371-47004390 | None:intergenic | 35.0% | |
| CAAAAATCAGTGAACTCTCT+TGG | - | chr5_3:47004520-47004539 | Msa0814710:CDS | 35.0% | |
| ACTCAGGAAACTTGGAAAAA+AGG | - | chr5_3:47004572-47004591 | Msa0814710:CDS | 35.0% | |
| GGAAACTTGGAAAAAAGGTT+AGG | - | chr5_3:47004577-47004596 | Msa0814710:CDS | 35.0% | |
| CAGAATGAACCTGAGAAAAA+GGG | - | chr5_3:47004628-47004647 | Msa0814710:CDS | 35.0% | |
| ! | TATCTATCACCCTTTTTCTC+AGG | + | chr5_3:47004640-47004659 | None:intergenic | 35.0% |
| GCAATTTACAGCTTCTACTT+TGG | - | chr5_3:47004664-47004683 | Msa0814710:CDS | 35.0% | |
| GTGTCTTGGTATGTCAAATA+AGG | + | chr5_3:47004718-47004737 | None:intergenic | 35.0% | |
| ! | GACACATATCTTGCTATAAC+AGG | - | chr5_3:47004733-47004752 | Msa0814710:CDS | 35.0% |
| ! | ACATATCTTGCTATAACAGG+TGG | - | chr5_3:47004736-47004755 | Msa0814710:CDS | 35.0% |
| !! | GGAATCTTTGAAGGTGTTTA+TGG | - | chr5_3:47004763-47004782 | Msa0814710:CDS | 35.0% |
| ! | GATTTACCAGCTGATTTACT+TGG | - | chr5_3:47004856-47004875 | Msa0814710:CDS | 35.0% |
| ! | TGATGATGATGATGATCAGT+TGG | + | chr5_3:47004965-47004984 | None:intergenic | 35.0% |
| AAAGAGGTTGACAATTGACA+TGG | - | chr5_3:47005192-47005211 | Msa0814710:CDS | 35.0% | |
| ! | TAGATTTAGAGCCTATGTAG+TGG | - | chr5_3:47005242-47005261 | Msa0814710:CDS | 35.0% |
| GTAAAAGAAAGGGTTGTTGA+AGG | + | chr5_3:47004043-47004062 | None:intergenic | 35.0% | |
| GAGGAAACTGGTAAAAGAAA+GGG | + | chr5_3:47004053-47004072 | None:intergenic | 35.0% | |
| TGAGGAAACTGGTAAAAGAA+AGG | + | chr5_3:47004054-47004073 | None:intergenic | 35.0% | |
| ! | ATGATGATGAATGAGGAAAC+TGG | + | chr5_3:47004065-47004084 | None:intergenic | 35.0% |
| ! | GAAAGTGATGATGATGAATG+AGG | + | chr5_3:47004072-47004091 | None:intergenic | 35.0% |
| !!! | ACTTGGTTTTGAGTTTGAAG+AGG | + | chr5_3:47004162-47004181 | None:intergenic | 35.0% |
| AGAGACTAGAAGTAACTACT+TGG | + | chr5_3:47004179-47004198 | None:intergenic | 35.0% | |
| GCTATTGAAGAAGAATGCAT+TGG | + | chr5_3:47004289-47004308 | None:intergenic | 35.0% | |
| !!! | AAGATTCTTGATGCTGCTTT+TGG | + | chr5_3:47004311-47004330 | None:intergenic | 35.0% |
| CAGAAAATGCTACTAGCAAA+GGG | + | chr5_3:47004370-47004389 | None:intergenic | 35.0% | |
| TCAGAAAATGCTACTAGCAA+AGG | + | chr5_3:47004371-47004390 | None:intergenic | 35.0% | |
| CAAAAATCAGTGAACTCTCT+TGG | - | chr5_3:47004520-47004539 | Msa0814710:CDS | 35.0% | |
| ACTCAGGAAACTTGGAAAAA+AGG | - | chr5_3:47004572-47004591 | Msa0814710:CDS | 35.0% | |
| GGAAACTTGGAAAAAAGGTT+AGG | - | chr5_3:47004577-47004596 | Msa0814710:CDS | 35.0% | |
| CAGAATGAACCTGAGAAAAA+GGG | - | chr5_3:47004628-47004647 | Msa0814710:CDS | 35.0% | |
| ! | TATCTATCACCCTTTTTCTC+AGG | + | chr5_3:47004640-47004659 | None:intergenic | 35.0% |
| GCAATTTACAGCTTCTACTT+TGG | - | chr5_3:47004664-47004683 | Msa0814710:CDS | 35.0% | |
| GTGTCTTGGTATGTCAAATA+AGG | + | chr5_3:47004718-47004737 | None:intergenic | 35.0% | |
| ! | GACACATATCTTGCTATAAC+AGG | - | chr5_3:47004733-47004752 | Msa0814710:CDS | 35.0% |
| ! | ACATATCTTGCTATAACAGG+TGG | - | chr5_3:47004736-47004755 | Msa0814710:CDS | 35.0% |
| !! | GGAATCTTTGAAGGTGTTTA+TGG | - | chr5_3:47004763-47004782 | Msa0814710:CDS | 35.0% |
| ! | GATTTACCAGCTGATTTACT+TGG | - | chr5_3:47004856-47004875 | Msa0814710:CDS | 35.0% |
| ! | TGATGATGATGATGATCAGT+TGG | + | chr5_3:47004965-47004984 | None:intergenic | 35.0% |
| AAAGAGGTTGACAATTGACA+TGG | - | chr5_3:47005192-47005211 | Msa0814710:CDS | 35.0% | |
| ! | TAGATTTAGAGCCTATGTAG+TGG | - | chr5_3:47005242-47005261 | Msa0814710:CDS | 35.0% |
| !!! | GTTTTGAGTTTGAAGAGGAG+AGG | + | chr5_3:47004157-47004176 | None:intergenic | 40.0% |
| TTTGGTTGTAGATGCTTGCT+TGG | + | chr5_3:47004244-47004263 | None:intergenic | 40.0% | |
| CATCAAGAATCTTCAAAGCC+AGG | - | chr5_3:47004318-47004337 | Msa0814710:three_prime_UTR | 40.0% | |
| ! | TGACTTAGTCTAAGGTATGC+AGG | + | chr5_3:47004502-47004521 | None:intergenic | 40.0% |
| !! | GAGTAGAGTTTGTTGCTGAA+TGG | + | chr5_3:47004556-47004575 | None:intergenic | 40.0% |
| TTCAGCAACAAACTCTACTC+AGG | - | chr5_3:47004556-47004575 | Msa0814710:CDS | 40.0% | |
| CAAACTCTACTCAGGAAACT+TGG | - | chr5_3:47004564-47004583 | Msa0814710:CDS | 40.0% | |
| ! | CCTTTTTCTCAGGTTCATTC+TGG | + | chr5_3:47004630-47004649 | None:intergenic | 40.0% |
| CCAGAATGAACCTGAGAAAA+AGG | - | chr5_3:47004627-47004646 | Msa0814710:CDS | 40.0% | |
| ! | AGCTTCTACTTTGGAGACTA+TGG | - | chr5_3:47004673-47004692 | Msa0814710:CDS | 40.0% |
| ! | AAGTTTGGTAAAGAGGCATG+AGG | + | chr5_3:47004940-47004959 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGTTTGGTAAAG+AGG | + | chr5_3:47004947-47004966 | None:intergenic | 40.0% |
| !! | GATGATCAGTTGGTGAAGTT+TGG | + | chr5_3:47004955-47004974 | None:intergenic | 40.0% |
| CTCTTGATGAGACTACAAAG+AGG | - | chr5_3:47005176-47005195 | Msa0814710:CDS | 40.0% | |
| !!! | GTTTTGAGTTTGAAGAGGAG+AGG | + | chr5_3:47004157-47004176 | None:intergenic | 40.0% |
| TTTGGTTGTAGATGCTTGCT+TGG | + | chr5_3:47004244-47004263 | None:intergenic | 40.0% | |
| CATCAAGAATCTTCAAAGCC+AGG | - | chr5_3:47004318-47004337 | Msa0814710:three_prime_UTR | 40.0% | |
| ! | TGACTTAGTCTAAGGTATGC+AGG | + | chr5_3:47004502-47004521 | None:intergenic | 40.0% |
| !! | GAGTAGAGTTTGTTGCTGAA+TGG | + | chr5_3:47004556-47004575 | None:intergenic | 40.0% |
| TTCAGCAACAAACTCTACTC+AGG | - | chr5_3:47004556-47004575 | Msa0814710:CDS | 40.0% | |
| CAAACTCTACTCAGGAAACT+TGG | - | chr5_3:47004564-47004583 | Msa0814710:CDS | 40.0% | |
| ! | CCTTTTTCTCAGGTTCATTC+TGG | + | chr5_3:47004630-47004649 | None:intergenic | 40.0% |
| CCAGAATGAACCTGAGAAAA+AGG | - | chr5_3:47004627-47004646 | Msa0814710:CDS | 40.0% | |
| ! | AGCTTCTACTTTGGAGACTA+TGG | - | chr5_3:47004673-47004692 | Msa0814710:CDS | 40.0% |
| ! | AAGTTTGGTAAAGAGGCATG+AGG | + | chr5_3:47004940-47004959 | None:intergenic | 40.0% |
| ! | GTTGGTGAAGTTTGGTAAAG+AGG | + | chr5_3:47004947-47004966 | None:intergenic | 40.0% |
| !! | GATGATCAGTTGGTGAAGTT+TGG | + | chr5_3:47004955-47004974 | None:intergenic | 40.0% |
| CTCTTGATGAGACTACAAAG+AGG | - | chr5_3:47005176-47005195 | Msa0814710:CDS | 40.0% | |
| ACTTGAGTGGGAAAGGTTGA+GGG | + | chr5_3:47004130-47004149 | None:intergenic | 45.0% | |
| AACTTGAGTGGGAAAGGTTG+AGG | + | chr5_3:47004131-47004150 | None:intergenic | 45.0% | |
| AGGTAGAACTTGAGTGGGAA+AGG | + | chr5_3:47004137-47004156 | None:intergenic | 45.0% | |
| AGGAGAGGTAGAACTTGAGT+GGG | + | chr5_3:47004142-47004161 | None:intergenic | 45.0% | |
| ! | CTGAGAAGCATGTACAAACC+TGG | + | chr5_3:47004339-47004358 | None:intergenic | 45.0% |
| GAGATCAATGAACGTGACAG+AGG | - | chr5_3:47004472-47004491 | Msa0814710:CDS | 45.0% | |
| ! | CTTGCTATAACAGGTGGTTC+TGG | - | chr5_3:47004742-47004761 | Msa0814710:CDS | 45.0% |
| !! | GGTGGTTCTGGAATCTTTGA+AGG | - | chr5_3:47004754-47004773 | Msa0814710:CDS | 45.0% |
| GGCTTTCCAAGTAAATCAGC+TGG | + | chr5_3:47004865-47004884 | None:intergenic | 45.0% | |
| !! | ACATGTGGTGATGGATCAAC+AGG | + | chr5_3:47004886-47004905 | None:intergenic | 45.0% |
| GATGGTTCAACATGTGGTGA+TGG | + | chr5_3:47004895-47004914 | None:intergenic | 45.0% | |
| ! | GATTTTCCAGGAAGGAAGAC+AGG | + | chr5_3:47005122-47005141 | None:intergenic | 45.0% |
| TCTAGCTGTAGCAGAGTTGT+TGG | - | chr5_3:47005215-47005234 | Msa0814710:CDS | 45.0% | |
| ! | TTTAGAGCCTATGTAGTGGC+TGG | - | chr5_3:47005246-47005265 | Msa0814710:CDS | 45.0% |
| ACTTGAGTGGGAAAGGTTGA+GGG | + | chr5_3:47004130-47004149 | None:intergenic | 45.0% | |
| AACTTGAGTGGGAAAGGTTG+AGG | + | chr5_3:47004131-47004150 | None:intergenic | 45.0% | |
| AGGTAGAACTTGAGTGGGAA+AGG | + | chr5_3:47004137-47004156 | None:intergenic | 45.0% | |
| AGGAGAGGTAGAACTTGAGT+GGG | + | chr5_3:47004142-47004161 | None:intergenic | 45.0% | |
| ! | CTGAGAAGCATGTACAAACC+TGG | + | chr5_3:47004339-47004358 | None:intergenic | 45.0% |
| GAGATCAATGAACGTGACAG+AGG | - | chr5_3:47004472-47004491 | Msa0814710:CDS | 45.0% | |
| ! | CTTGCTATAACAGGTGGTTC+TGG | - | chr5_3:47004742-47004761 | Msa0814710:CDS | 45.0% |
| !! | GGTGGTTCTGGAATCTTTGA+AGG | - | chr5_3:47004754-47004773 | Msa0814710:CDS | 45.0% |
| GGCTTTCCAAGTAAATCAGC+TGG | + | chr5_3:47004865-47004884 | None:intergenic | 45.0% | |
| !! | ACATGTGGTGATGGATCAAC+AGG | + | chr5_3:47004886-47004905 | None:intergenic | 45.0% |
| GATGGTTCAACATGTGGTGA+TGG | + | chr5_3:47004895-47004914 | None:intergenic | 45.0% | |
| ! | GATTTTCCAGGAAGGAAGAC+AGG | + | chr5_3:47005122-47005141 | None:intergenic | 45.0% |
| TCTAGCTGTAGCAGAGTTGT+TGG | - | chr5_3:47005215-47005234 | Msa0814710:CDS | 45.0% | |
| ! | TTTAGAGCCTATGTAGTGGC+TGG | - | chr5_3:47005246-47005265 | Msa0814710:CDS | 45.0% |
| GAGGAGAGGTAGAACTTGAG+TGG | + | chr5_3:47004143-47004162 | None:intergenic | 50.0% | |
| GCAGGAGATGGTTCAACATG+TGG | + | chr5_3:47004901-47004920 | None:intergenic | 50.0% | |
| TGAACCATCTCCTGCTGCTA+AGG | - | chr5_3:47004906-47004925 | Msa0814710:CDS | 50.0% | |
| GACTTACCTGTCTTCCTTCC+TGG | - | chr5_3:47005113-47005132 | Msa0814710:CDS | 50.0% | |
| GAGGAGAGGTAGAACTTGAG+TGG | + | chr5_3:47004143-47004162 | None:intergenic | 50.0% | |
| GCAGGAGATGGTTCAACATG+TGG | + | chr5_3:47004901-47004920 | None:intergenic | 50.0% | |
| TGAACCATCTCCTGCTGCTA+AGG | - | chr5_3:47004906-47004925 | Msa0814710:CDS | 50.0% | |
| GACTTACCTGTCTTCCTTCC+TGG | - | chr5_3:47005113-47005132 | Msa0814710:CDS | 50.0% | |
| ! | GTAGCCTTAGCAGCAGGAGA+TGG | + | chr5_3:47004913-47004932 | None:intergenic | 55.0% |
| ! | GTAGCCTTAGCAGCAGGAGA+TGG | + | chr5_3:47004913-47004932 | None:intergenic | 55.0% |
| ! | GGCTCAGTAGCCTTAGCAGC+AGG | + | chr5_3:47004919-47004938 | None:intergenic | 60.0% |
| GAGCCTATGTAGTGGCTGGC+TGG | - | chr5_3:47005250-47005269 | Msa0814710:CDS | 60.0% | |
| CAGCCAGCCAGCCACTACAT+AGG | + | chr5_3:47005256-47005275 | None:intergenic | 60.0% | |
| ! | GGCTCAGTAGCCTTAGCAGC+AGG | + | chr5_3:47004919-47004938 | None:intergenic | 60.0% |
| GAGCCTATGTAGTGGCTGGC+TGG | - | chr5_3:47005250-47005269 | Msa0814710:CDS | 60.0% | |
| CAGCCAGCCAGCCACTACAT+AGG | + | chr5_3:47005256-47005275 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 47004040 | 47005349 | 47004040 | ID=Msa0814710;Name=Msa0814710 |
| chr5_3 | mRNA | 47004040 | 47005349 | 47004040 | ID=Msa0814710-mRNA-1;Parent=Msa0814710;Name=Msa0814710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=53|1|1|1|1|1|2|380|256 |
| chr5_3 | exon | 47004040 | 47004943 | 47004040 | ID=Msa0814710-mRNA-1:exon:14258;Parent=Msa0814710-mRNA-1 |
| chr5_3 | exon | 47005050 | 47005349 | 47005050 | ID=Msa0814710-mRNA-1:exon:14257;Parent=Msa0814710-mRNA-1 |
| chr5_3 | five_prime_UTR | 47005297 | 47005349 | 47005297 | ID=Msa0814710-mRNA-1:five_prime_utr;Parent=Msa0814710-mRNA-1 |
| chr5_3 | CDS | 47005050 | 47005296 | 47005050 | ID=Msa0814710-mRNA-1:cds;Parent=Msa0814710-mRNA-1 |
| chr5_3 | CDS | 47004420 | 47004943 | 47004420 | ID=Msa0814710-mRNA-1:cds;Parent=Msa0814710-mRNA-1 |
| chr5_3 | three_prime_UTR | 47004040 | 47004419 | 47004040 | ID=Msa0814710-mRNA-1:three_prime_utr;Parent=Msa0814710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
