AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0666990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666990 MtrunA17_Chr4g0005481 91.704 446 10 1 1 419 1 446 0.0 842
Msa0666990 MtrunA17_Chr4g0005491 51.240 363 140 4 94 419 45 407 1.45e-131 384
Msa0666990 MtrunA17_Chr7g0243301 50.543 368 145 4 86 419 45 409 2.34e-129 379
Msa0666990 MtrunA17_Chr5g0437601 49.271 343 144 3 104 416 79 421 6.40e-116 345
Msa0666990 MtrunA17_Chr3g0114101 50.737 339 137 3 108 416 89 427 9.42e-116 345
Msa0666990 MtrunA17_Chr8g0360521 46.491 342 154 3 106 419 69 409 3.64e-110 330
Msa0666990 MtrunA17_Chr4g0006991 44.767 344 160 3 106 419 84 427 3.46e-102 310
Msa0666990 MtrunA17_Chr3g0113671 44.315 343 159 5 106 416 104 446 6.85e-99 302
Msa0666990 MtrunA17_Chr7g0242701 44.058 345 163 3 105 419 83 427 1.22e-96 296
Msa0666990 MtrunA17_Chr5g0437291 41.908 346 166 5 106 416 163 508 2.72e-93 290
Msa0666990 MtrunA17_Chr4g0068111 35.054 368 185 10 92 419 100 453 4.85e-69 226
Msa0666990 MtrunA17_Chr2g0314801 36.416 346 169 9 104 419 29 353 6.27e-68 219
Msa0666990 MtrunA17_Chr3g0105301 35.260 346 180 7 107 419 42 376 5.67e-67 218
Msa0666990 MtrunA17_Chr1g0175671 32.536 418 231 9 42 416 97 506 6.46e-66 219
Msa0666990 MtrunA17_Chr7g0258851 34.973 366 192 8 89 416 227 584 3.45e-65 219
Msa0666990 MtrunA17_Chr3g0085081 36.207 348 168 11 99 416 22 345 2.02e-64 210
Msa0666990 MtrunA17_Chr5g0430371 35.143 350 177 7 107 416 57 396 1.29e-63 209
Msa0666990 MtrunA17_Chr3g0091031 35.920 348 169 11 99 416 22 345 2.03e-63 207
Msa0666990 MtrunA17_Chr8g0368461 33.426 359 182 7 106 416 176 525 5.38e-62 209
Msa0666990 MtrunA17_Chr3g0097891 33.918 342 176 7 104 416 27 347 7.24e-62 203
Msa0666990 MtrunA17_Chr1g0213281 33.524 349 189 7 107 419 174 515 9.90e-62 208
Msa0666990 MtrunA17_Chr7g0269991 35.694 353 164 8 108 419 137 467 1.30e-61 206
Msa0666990 MtrunA17_Chr4g0071391 34.085 355 178 9 106 419 107 446 1.01e-60 203
Msa0666990 MtrunA17_Chr1g0210771 33.333 348 186 8 101 419 52 382 1.25e-60 201
Msa0666990 MtrunA17_Chr3g0085071 34.006 347 177 9 99 416 37 360 4.01e-60 199
Msa0666990 MtrunA17_Chr5g0413271 34.203 345 185 9 106 419 143 476 8.94e-60 202
Msa0666990 MtrunA17_Chr1g0171171 33.429 347 184 9 102 419 47 375 4.55e-59 197
Msa0666990 MtrunA17_Chr5g0413851 33.523 352 182 9 94 416 28 356 9.05e-59 196
Msa0666990 MtrunA17_Chr4g0045951 33.239 355 185 9 90 415 27 358 6.37e-58 194
Msa0666990 MtrunA17_Chr4g0041011 34.226 336 180 9 107 419 46 363 9.48e-58 193
Msa0666990 MtrunA17_Chr2g0283581 33.046 348 180 9 101 419 35 358 3.75e-57 191
Msa0666990 MtrunA17_Chr4g0045941 33.724 341 172 9 105 415 30 346 7.32e-57 191
Msa0666990 MtrunA17_Chr2g0325481 33.819 343 174 10 102 415 44 362 2.51e-55 187
Msa0666990 MtrunA17_Chr7g0259711 33.894 357 182 12 105 419 88 432 7.49e-55 188
Msa0666990 MtrunA17_Chr2g0287901 31.701 388 207 10 75 416 59 434 9.65e-55 187
Msa0666990 MtrunA17_Chr2g0314791 32.378 349 171 10 106 419 27 345 2.05e-52 179
Msa0666990 MtrunA17_Chr3g0126021 30.362 359 185 9 103 419 124 459 4.99e-52 181
Msa0666990 MtrunA17_Chr8g0384151 30.028 353 174 9 108 416 90 413 3.67e-47 167
Msa0666990 MtrunA17_Chr1g0178081 31.215 362 140 10 97 416 44 338 4.01e-43 154
Msa0666990 MtrunA17_Chr6g0456681 28.962 366 201 12 100 419 56 408 3.95e-40 148
Msa0666990 MtrunA17_Chr4g0070341 26.757 441 247 15 27 416 53 468 7.66e-34 131
Msa0666990 MtrunA17_Chr6g0476041 26.446 363 205 13 106 419 165 514 1.07e-31 126
Msa0666990 MtrunA17_Chr1g0209921 32.174 230 130 5 103 308 39 266 2.02e-31 120
Msa0666990 MtrunA17_Chr1g0188191 26.050 357 210 12 108 419 234 581 2.57e-31 125
Msa0666990 MtrunA17_Chr8g0347321 26.039 361 208 12 105 419 92 439 3.87e-31 124
Msa0666990 MtrunA17_Chr8g0384421 27.733 375 189 16 96 415 121 468 7.87e-31 123
Msa0666990 MtrunA17_Chr6g0456691 27.500 360 205 11 103 419 73 419 1.47e-28 116
Msa0666990 MtrunA17_Chr5g0414041 27.446 368 196 14 105 419 84 433 1.60e-28 116
Msa0666990 MtrunA17_Chr2g0283851 25.464 377 195 14 103 419 50 400 3.66e-28 114
Msa0666990 MtrunA17_Chr5g0414051 27.419 372 196 16 102 419 69 420 4.06e-27 112
Msa0666990 MtrunA17_Chr5g0414091 27.559 381 199 17 93 419 74 431 6.54e-27 111
Msa0666990 MtrunA17_Chr7g0226991 26.997 363 201 14 106 419 55 402 1.85e-26 110
Msa0666990 MtrunA17_Chr4g0049421 26.816 358 195 16 108 415 48 388 3.56e-26 109
Msa0666990 MtrunA17_Chr5g0414061 27.249 378 190 17 101 419 87 438 4.49e-25 106
Msa0666990 MtrunA17_Chr6g0455901 25.676 370 197 15 106 419 69 416 1.34e-23 102
Msa0666990 MtrunA17_Chr3g0140371 25.956 366 206 13 102 419 12 360 1.63e-23 101
Msa0666990 MtrunA17_Chr6g0451321 23.529 459 258 17 16 419 37 457 1.04e-22 100
Msa0666990 MtrunA17_Chr8g0391481 24.800 375 216 13 95 419 14 372 1.50e-22 98.6
Msa0666990 MtrunA17_Chr8g0387921 23.611 360 213 12 108 419 74 419 8.16e-21 94.0
Msa0666990 MtrunA17_Chr3g0085101 38.596 114 62 2 271 381 1 109 6.00e-18 79.3
Msa0666990 MtrunA17_Chr7g0221291 38.384 99 60 1 95 193 66 163 8.14e-18 80.5
Msa0666990 MtrunA17_Chr7g0221271 38.384 99 60 1 95 193 66 163 1.23e-16 78.2
Msa0666990 MtrunA17_Chr1g0209931 37.624 101 47 2 319 419 8 92 4.32e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0666990 AT5G01620.2 62.416 447 135 6 5 419 4 449 0.0 566
Msa0666990 AT5G01620.1 62.416 447 135 6 5 419 4 449 0.0 566
Msa0666990 AT5G01620.3 61.758 455 133 7 5 419 4 457 0.0 564
Msa0666990 AT2G38320.1 48.493 365 146 4 89 419 48 404 1.60e-123 364
Msa0666990 AT1G73140.1 45.906 342 156 3 106 419 65 405 2.45e-111 333
Msa0666990 AT2G40320.1 46.647 343 153 3 104 416 77 419 2.10e-109 328
Msa0666990 AT3G11030.1 47.384 344 150 4 104 416 102 445 1.54e-107 325
Msa0666990 AT2G38320.2 48.598 321 131 3 133 419 1 321 4.18e-107 319
Msa0666990 AT3G55990.1 43.923 362 171 5 87 416 119 480 1.59e-101 310
Msa0666990 AT5G01360.2 44.928 345 159 4 106 419 34 378 1.97e-101 306
Msa0666990 AT5G01360.1 44.928 345 159 4 106 419 90 434 4.42e-101 308
Msa0666990 AT2G40150.1 44.290 359 160 8 97 416 60 417 2.02e-98 300
Msa0666990 AT2G40160.2 40.510 353 173 8 103 419 72 423 1.71e-85 268
Msa0666990 AT2G40160.1 40.401 349 171 8 103 415 72 419 9.16e-85 265
Msa0666990 AT3G62390.1 36.639 363 177 10 94 419 126 472 1.39e-68 225
Msa0666990 AT5G49340.1 36.544 353 174 10 107 419 99 441 2.78e-68 224
Msa0666990 AT3G12060.1 34.568 405 215 9 54 416 136 532 2.00e-66 221
Msa0666990 AT1G60790.1 35.519 366 189 9 90 416 172 529 2.01e-65 218
Msa0666990 AT5G58600.1 34.582 347 184 7 106 419 64 400 4.16e-64 211
Msa0666990 AT2G34070.1 33.518 361 187 8 89 419 46 383 4.21e-64 211
Msa0666990 AT1G78710.1 33.043 345 180 8 104 419 34 356 1.18e-63 209
Msa0666990 AT1G29050.1 33.515 367 187 9 85 419 37 378 1.14e-62 207
Msa0666990 AT3G14850.2 35.088 342 179 12 104 419 30 354 1.21e-62 206
Msa0666990 AT5G06700.1 35.311 354 181 9 104 419 251 594 1.65e-61 209
Msa0666990 AT2G30900.1 34.302 344 173 10 108 419 43 365 1.74e-61 203
Msa0666990 AT3G54260.1 36.471 340 164 11 108 415 51 370 1.83e-61 204
Msa0666990 AT5G20590.1 35.311 354 174 8 107 419 140 479 1.55e-60 204
Msa0666990 AT2G40160.3 41.909 241 105 6 103 309 72 311 3.88e-58 193
Msa0666990 AT3G06080.2 33.613 357 186 8 104 419 99 445 5.84e-58 197
Msa0666990 AT2G30010.1 33.609 363 178 11 103 419 51 396 6.00e-58 195
Msa0666990 AT2G30010.2 33.609 363 178 11 103 419 94 439 9.23e-58 196
Msa0666990 AT5G19160.1 33.880 366 170 9 104 416 95 441 5.81e-56 191
Msa0666990 AT2G31110.2 33.429 347 177 9 103 419 40 362 1.89e-55 187
Msa0666990 AT2G42570.1 32.759 348 182 9 101 419 40 364 6.58e-54 184
Msa0666990 AT5G06230.2 33.243 370 195 7 92 419 5 364 2.03e-53 182
Msa0666990 AT5G06230.1 33.243 367 193 7 92 416 46 402 2.74e-53 183
Msa0666990 AT1G48880.1 32.275 378 181 12 86 419 93 439 7.71e-52 180
Msa0666990 AT3G11570.1 32.727 330 173 9 125 416 98 416 1.16e-45 163
Msa0666990 AT3G62390.2 35.039 254 124 5 94 311 126 374 1.02e-43 158
Msa0666990 AT1G78710.2 29.721 323 167 10 104 419 27 296 2.64e-41 148
Msa0666990 AT1G70230.1 29.944 354 185 13 108 419 79 411 8.67e-38 142
Msa0666990 AT5G19160.2 34.538 249 112 4 104 309 95 335 6.28e-37 138
Msa0666990 AT5G20590.2 33.745 243 116 4 107 309 140 377 2.53e-36 137
Msa0666990 AT5G58600.2 33.047 233 119 5 106 308 64 289 3.53e-36 134
Msa0666990 AT2G34070.2 31.365 271 134 7 179 419 1 249 5.43e-36 133
Msa0666990 AT3G06080.1 33.745 243 122 5 104 309 99 339 6.30e-36 135
Msa0666990 AT2G30900.2 33.333 225 111 6 108 301 43 259 6.62e-35 130
Msa0666990 AT5G64020.1 29.282 362 190 17 108 416 57 405 1.59e-34 132
Msa0666990 AT5G20680.6 28.647 377 193 16 95 419 105 457 2.34e-34 133
Msa0666990 AT5G20680.4 28.647 377 193 16 95 419 199 551 3.89e-34 134
Msa0666990 AT5G20680.1 28.647 377 193 16 95 419 199 551 3.89e-34 134
Msa0666990 AT5G20680.3 28.647 377 193 16 95 419 199 551 3.89e-34 134
Msa0666990 AT5G20680.5 28.647 377 193 16 95 419 199 551 3.89e-34 134
Msa0666990 AT5G20680.2 28.647 377 193 16 95 419 181 533 4.11e-34 134
Msa0666990 AT3G14850.1 32.210 267 139 11 179 419 1 251 6.30e-34 127
Msa0666990 AT1G01430.1 28.056 360 206 11 105 419 96 447 1.68e-32 128
Msa0666990 AT4G25360.1 26.099 364 203 13 108 419 175 524 8.01e-32 127
Msa0666990 AT4G25360.2 26.099 364 203 13 108 419 175 524 8.01e-32 127
Msa0666990 AT5G06230.3 31.008 258 137 4 92 308 46 303 8.98e-32 123
Msa0666990 AT5G15890.1 26.027 365 214 11 95 419 174 522 9.33e-32 127
Msa0666990 AT5G64470.3 28.333 360 200 14 103 419 50 394 1.37e-31 124
Msa0666990 AT2G37720.1 27.123 365 192 15 103 416 138 479 3.42e-31 125
Msa0666990 AT5G51640.1 24.725 364 209 12 108 419 138 488 9.23e-31 124
Msa0666990 AT2G31110.1 33.624 229 126 7 194 419 9 214 4.63e-30 116
Msa0666990 AT3G02440.2 26.593 361 197 11 108 419 135 476 1.09e-29 120
Msa0666990 AT3G02440.1 26.593 361 197 11 108 419 127 468 1.28e-29 120
Msa0666990 AT2G31110.3 29.386 228 124 5 103 301 40 259 1.39e-28 113
Msa0666990 AT4G23790.1 26.316 361 209 13 103 416 74 424 8.28e-28 114
Msa0666990 AT5G64470.2 27.869 366 200 16 103 419 50 400 1.23e-27 114
Msa0666990 AT4G01080.1 25.543 368 202 10 98 415 81 426 5.11e-26 109
Msa0666990 AT2G14530.1 24.863 366 206 12 105 419 59 406 5.54e-25 106
Msa0666990 AT3G28150.1 27.701 361 192 17 108 419 70 410 1.47e-24 105
Msa0666990 AT5G15900.1 25.691 362 210 11 103 419 62 409 3.34e-22 98.6
Msa0666990 AT5G15900.2 25.691 362 210 11 103 419 81 428 3.97e-22 98.6
Msa0666990 AT4G11090.1 23.269 361 224 11 103 419 74 425 9.14e-21 94.4
Msa0666990 AT5G64470.4 26.545 275 152 12 103 335 50 316 2.82e-15 76.6
Msa0666990 AT5G64470.1 26.692 266 146 11 103 326 50 308 7.17e-15 75.5

Find 117 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACAATTTCCTTCACTTTC+TGG 0.072922 4_4:+7218127 None:intergenic
TTCTGCATAGTTTGCGTTAA+AGG 0.107358 4_4:+7223722 None:intergenic
ATATCCATTGCCCTCTATTA+AGG 0.217470 4_4:+7221804 None:intergenic
AGAGAATCTGCTGAAAATTA+AGG 0.233432 4_4:-7217695 Msa0666990:three_prime_UTR
GATACGGACAATAGCTTAAC+TGG 0.280812 4_4:+7221110 None:intergenic
TGAGATTTCTTGACGTGATT+AGG 0.294116 4_4:+7223524 None:intergenic
CACTTTCTGGATTCCACTCT+CGG 0.305752 4_4:+7218140 None:intergenic
AATAACAGAAGAAGGATAAA+AGG 0.306836 4_4:+7223665 None:intergenic
CAAGCATGGAAGAAATGATT+TGG 0.310510 4_4:-7223019 Msa0666990:CDS
GAGATTTCTTGACGTGATTA+GGG 0.330203 4_4:+7223525 None:intergenic
GGAGGATTTGACAATTGTTC+AGG 0.333796 4_4:+7217914 None:intergenic
CTATTGATGTCGAGAGCTAT+TGG 0.340298 4_4:-7218090 Msa0666990:CDS
CTGCTCTGTTGTTTGATACA+AGG 0.342054 4_4:-7217722 Msa0666990:three_prime_UTR
TCCTTATATGTCGGATCAAT+TGG 0.345640 4_4:-7223049 Msa0666990:CDS
AGTAGATGCAACTCTACTAT+AGG 0.345709 4_4:-7223213 Msa0666990:CDS
CATGGGAGCATGGGCCGATT+GGG 0.354248 4_4:-7220953 Msa0666990:CDS
CCATGGGAGCATGGGCCGAT+TGG 0.367066 4_4:-7220954 Msa0666990:CDS
AGTAACTCATTCCACGTATC+AGG 0.367182 4_4:+7217851 None:intergenic
GCCAATTGATCCGACATATA+AGG 0.368564 4_4:+7223048 None:intergenic
GAGGATTTGAATTCTAGTTC+TGG 0.371118 4_4:-7217401 Msa0666990:three_prime_UTR
TGCATACATTGGTGCTTGCC+AGG 0.380507 4_4:-7217878 Msa0666990:CDS
CAATAGCTCTCGACATCAAT+AGG 0.386275 4_4:+7218091 None:intergenic
AAGCATGGAAGAAATGATTT+GGG 0.393933 4_4:-7223018 Msa0666990:CDS
TTGACGTGATTAGGGAGATT+AGG 0.394135 4_4:+7223533 None:intergenic
ATAACCGCGACCTTTGCATT+TGG 0.394493 4_4:-7217761 Msa0666990:three_prime_UTR
AGATGGACTGATGAAGAAAA+TGG 0.397042 4_4:-7221018 Msa0666990:CDS
TATTGATGTCGAGAGCTATT+GGG 0.397310 4_4:-7218089 Msa0666990:CDS
TGGAGTTGGCCATGGGAGCA+TGG 0.406053 4_4:-7220963 Msa0666990:CDS
ATGCAACAGTTGAATTCCTC+TGG 0.407598 4_4:-7221286 Msa0666990:CDS
CTTGGAAAATTGAAGTTTGA+AGG 0.410127 4_4:+7223803 None:intergenic
GCATGCTTCAGAACTGAATC+AGG 0.412599 4_4:+7221194 None:intergenic
TTCTCCACAGTGCTCATTGT+TGG 0.415633 4_4:+7218049 None:intergenic
TATCCATTGCCCTCTATTAA+GGG 0.415981 4_4:+7221805 None:intergenic
GTAGATGCAACTCTACTATA+GGG 0.432432 4_4:-7223212 Msa0666990:CDS
GGGAAAAGTTGAGAGGAAAA+AGG 0.433642 4_4:-7221847 Msa0666990:CDS
TAGAGGGCAATGGATATCTA+TGG 0.439218 4_4:-7221798 Msa0666990:intron
AGTTTGCGTTAAAGGATTGT+TGG 0.442813 4_4:+7223730 None:intergenic
GAGAATCTGCTGAAAATTAA+GGG 0.449657 4_4:-7217694 Msa0666990:three_prime_UTR
GTTTGCGTTAAAGGATTGTT+GGG 0.452025 4_4:+7223731 None:intergenic
TTCTGAAGCATGCAGCACTC+TGG 0.456327 4_4:-7221184 Msa0666990:CDS
CCATGTCCCCGACACATCTC+TGG 0.466181 4_4:-7220885 Msa0666990:intron
TGCTCTGTTGTTTGATACAA+GGG 0.469627 4_4:-7217721 Msa0666990:three_prime_UTR
AAACTATGCAGAAGATGAAA+TGG 0.472528 4_4:-7223712 Msa0666990:exon
GTTGGAGATTCCCTTAATAG+AGG 0.481483 4_4:-7221815 Msa0666990:CDS
GAGTCATCGGAGAGTGAGTT+CGG 0.484001 4_4:-7223145 Msa0666990:CDS
TGAATCTAATTCCGACGATC+CGG 0.487053 4_4:-7221249 Msa0666990:CDS
ATGATTTGGGGTATCAGCAT+TGG 0.488182 4_4:-7223005 Msa0666990:CDS
GAGGATTTGACAATTGTTCA+GGG 0.493800 4_4:+7217915 None:intergenic
GGTGTTGCTTCACAAAATCA+AGG 0.494129 4_4:-7217488 Msa0666990:three_prime_UTR
TCTGAAGCATGCAGCACTCT+GGG 0.494219 4_4:-7221183 Msa0666990:CDS
CTTTCTGAGTATCGAAAAGA+TGG 0.495771 4_4:-7217977 Msa0666990:CDS
AGGAGCTATGGAGTTGGCCA+TGG 0.503017 4_4:-7220971 Msa0666990:CDS
CCAGAGATGTGTCGGGGACA+TGG 0.503335 4_4:+7220885 None:intergenic
GAAAGTGAAGGAAATTGTTA+CGG 0.506616 4_4:-7218124 Msa0666990:CDS
GTCGAGAGCTATTGGGGAAG+TGG 0.506665 4_4:-7218082 Msa0666990:CDS
CCAATCGGCCCATGCTCCCA+TGG 0.507949 4_4:+7220954 None:intergenic
GGAGTTGGCCATGGGAGCAT+GGG 0.509010 4_4:-7220962 Msa0666990:CDS
CTTCTAACACCTAAAGCTAA+AGG 0.509551 4_4:+7217532 None:intergenic
GTGGAATGTAAAAGAAATGT+GGG 0.510084 4_4:-7221867 Msa0666990:CDS
TGAAAACTAATAACAGAAGA+AGG 0.514303 4_4:+7223657 None:intergenic
ATTAGACGGACGAGGAGCTA+TGG 0.520515 4_4:-7220983 Msa0666990:CDS
GCATACATTGGTGCTTGCCA+GGG 0.521197 4_4:-7217877 Msa0666990:CDS
GTTCTTGATGAATGTGAAGT+GGG 0.526213 4_4:+7223582 None:intergenic
TTTGACGAGAAACTTTGACT+TGG 0.533803 4_4:+7223785 None:intergenic
ATTCTCACCAGAGATGTGTC+GGG 0.535627 4_4:+7220878 None:intergenic
TTGGAGATTCCCTTAATAGA+GGG 0.535850 4_4:-7221814 Msa0666990:CDS
GGTGGAATGTAAAAGAAATG+TGG 0.540050 4_4:-7221868 Msa0666990:CDS
TCTGTGATTCACCGGATCGT+CGG 0.542409 4_4:+7221238 None:intergenic
TTGCTGCTTTCCAAATGCAA+AGG 0.547200 4_4:+7217751 None:intergenic
CTACTATAGGGTATAGTGGT+CGG 0.547743 4_4:-7223200 Msa0666990:CDS
TGGGGTATCAGCATTGGAGA+TGG 0.556269 4_4:-7222999 Msa0666990:CDS
CGGAAAATTGCTCGGCGTGG+CGG 0.557631 4_4:-7223180 Msa0666990:CDS
GTTCAAAGAGTTCGAGTCAT+CGG 0.557686 4_4:-7223158 Msa0666990:CDS
GACTTTAGAAGAAACCCAAT+CGG 0.560004 4_4:+7220939 None:intergenic
TCATCCAGTCTGTGATTCAC+CGG 0.562469 4_4:+7221230 None:intergenic
GATTCTCACCAGAGATGTGT+CGG 0.562623 4_4:+7220877 None:intergenic
CTTTCCAAATGCAAAGGTCG+CGG 0.568257 4_4:+7217757 None:intergenic
TGCAACAGTTGAATTCCTCT+GGG 0.571258 4_4:-7221285 Msa0666990:CDS
GAATTAGATTCAACAAGAAG+TGG 0.574191 4_4:+7221260 None:intergenic
CTTACTCTGATTGCATACAT+TGG 0.576457 4_4:-7217889 Msa0666990:CDS
AACTCTACTATAGGGTATAG+TGG 0.583574 4_4:-7223204 Msa0666990:CDS
CACATGATTGTGATTTGAAG+AGG 0.587478 4_4:-7222972 Msa0666990:intron
ATTGATGTCGAGAGCTATTG+GGG 0.587738 4_4:-7218088 Msa0666990:CDS
GGAGCTATGGAGTTGGCCAT+GGG 0.596704 4_4:-7220970 Msa0666990:CDS
TTCCACGTATCAGGTACCCC+TGG 0.597532 4_4:+7217860 None:intergenic
ACATACTTGTGGTGGAGACA+AGG 0.599078 4_4:-7221134 Msa0666990:CDS
CAATTGGCTTGTCACAAGCA+TGG 0.600797 4_4:-7223033 Msa0666990:CDS
CAGAAAGTTGAGTAACATTG+AGG 0.601479 4_4:+7217993 None:intergenic
ATCAGATTGTCCTTATATGT+CGG 0.601694 4_4:-7223058 Msa0666990:CDS
AATCACGTCAAGAAATCTCA+AGG 0.606852 4_4:-7223521 Msa0666990:intron
GACAATTGTTCAGGGCGAAG+AGG 0.611639 4_4:+7217923 None:intergenic
CATACATTGGTGCTTGCCAG+GGG 0.614156 4_4:-7217876 Msa0666990:CDS
CAATCTGATTCATTATACAA+TGG 0.620866 4_4:+7223072 None:intergenic
TGTTCTTGATGAATGTGAAG+TGG 0.621328 4_4:+7223581 None:intergenic
ATTCCCTTAATAGAGGGCAA+TGG 0.622746 4_4:-7221808 Msa0666990:CDS
CGGACGAGGAGCTATGGAGT+TGG 0.622820 4_4:-7220977 Msa0666990:CDS
GAGTGGAATCCAGAAAGTGA+AGG 0.631701 4_4:-7218136 Msa0666990:CDS
TCTCATTTAGGAGCCGAGAG+TGG 0.641391 4_4:-7218153 Msa0666990:intron
CGATCCGGTGAATCACAGAC+TGG 0.645035 4_4:-7221234 Msa0666990:CDS
GAAATGTGGGAAAAGTTGAG+AGG 0.646292 4_4:-7221854 Msa0666990:CDS
TGCCAGGGGTACCTGATACG+TGG 0.646330 4_4:-7217862 Msa0666990:CDS
ATAGTGGTCGGAAAATTGCT+CGG 0.646712 4_4:-7223188 Msa0666990:CDS
TGAATCACAGACTGGATGAA+CGG 0.648682 4_4:-7221226 Msa0666990:CDS
ATACGGACAATAGCTTAACT+GGG 0.649776 4_4:+7221111 None:intergenic
CTCTTCAAATCACAATCATG+TGG 0.651299 4_4:+7222973 None:intergenic
TGTGAAGAATTAGACGGACG+AGG 0.651919 4_4:-7220991 Msa0666990:CDS
GGTCGGAAAATTGCTCGGCG+TGG 0.655381 4_4:-7223183 Msa0666990:CDS
GAATTCAAATCCTCTACACA+TGG 0.658856 4_4:+7217410 None:intergenic
TTCTCACCAGAGATGTGTCG+GGG 0.662612 4_4:+7220879 None:intergenic
TGTGAATGGTACTACCATTG+TGG 0.664224 4_4:+7223618 None:intergenic
GGAGCTTGTGAAGAATTAGA+CGG 0.668392 4_4:-7220997 Msa0666990:CDS
AGCATGGAAGAAATGATTTG+GGG 0.671028 4_4:-7223017 Msa0666990:CDS
GCATTCTCAACTCTCCACAA+TGG 0.689519 4_4:-7223632 Msa0666990:CDS
TGTATGCAATCAGAGTAAGA+CGG 0.716666 4_4:+7217893 None:intergenic
CAACAAGAAGTGGAGCCCAG+AGG 0.732586 4_4:+7221270 None:intergenic
ATGCAATCAGAGTAAGACGG+AGG 0.738418 4_4:+7217896 None:intergenic
TTTGCCAACAATGAGCACTG+TGG 0.766465 4_4:-7218053 Msa0666990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTTTAGAGATTT+TGG - chr4_4:7217925-7217944 Msa0666990:CDS 10.0%
!! TCAACAAAAAATTATTATAT+AGG + chr4_4:7220718-7220737 None:intergenic 10.0%
!!! AAATTTTGTCAATTTTTTAA+GGG + chr4_4:7222303-7222322 None:intergenic 10.0%
!!! ACACAATTTTTATATTTTTT+GGG + chr4_4:7222361-7222380 None:intergenic 10.0%
!!! AACACAATTTTTATATTTTT+TGG + chr4_4:7222362-7222381 None:intergenic 10.0%
!! AAAATTAATTAATAAGAAAC+TGG + chr4_4:7222537-7222556 None:intergenic 10.0%
!! ACTTAAAAATGTAAACTTTA+TGG - chr4_4:7217816-7217835 Msa0666990:exon 15.0%
!! CTTAAAAATGTAAACTTTAT+GGG - chr4_4:7217817-7217836 Msa0666990:exon 15.0%
!! TATAAACACTTATATGATAA+AGG - chr4_4:7218506-7218525 Msa0666990:intron 15.0%
!! ATATAAATAAGATCATACAT+CGG - chr4_4:7219111-7219130 Msa0666990:intron 15.0%
!! TATAAGATGTAATATAAAGA+GGG + chr4_4:7221407-7221426 None:intergenic 15.0%
!! ATATAAGATGTAATATAAAG+AGG + chr4_4:7221408-7221427 None:intergenic 15.0%
!! TAAAAGTAAAAACTTTCTTT+GGG + chr4_4:7222148-7222167 None:intergenic 15.0%
!!! CAAATTTTGTCAATTTTTTA+AGG + chr4_4:7222304-7222323 None:intergenic 15.0%
!! TATTTGAACAAGATTAATTT+GGG + chr4_4:7222718-7222737 None:intergenic 15.0%
!! TTATTTGAACAAGATTAATT+TGG + chr4_4:7222719-7222738 None:intergenic 15.0%
!! ATTAATCTTGTTCAAATAAT+AGG - chr4_4:7222720-7222739 Msa0666990:intron 15.0%
!!! TGTATCAAAGATTTTAAATA+GGG + chr4_4:7222882-7222901 None:intergenic 15.0%
!!! CTATTTTGACTTATATACTT+TGG + chr4_4:7217413-7217432 None:intergenic 20.0%
!!! ATTTTTGTGTTTTGTTGAAA+TGG - chr4_4:7217768-7217787 Msa0666990:three_prime_UTR 20.0%
!!! TTTTTGTGTTTTGTTGAAAT+GGG - chr4_4:7217769-7217788 Msa0666990:three_prime_UTR 20.0%
!!! TTTGTAATTTGAGTTTGATT+TGG - chr4_4:7217846-7217865 Msa0666990:CDS 20.0%
!!! TTTTTTGTGATTTGTTGAAA+TGG - chr4_4:7217890-7217909 Msa0666990:CDS 20.0%
!!! TTTTTGTGATTTGTTGAAAT+GGG - chr4_4:7217891-7217910 Msa0666990:CDS 20.0%
!!! TAATTAAGTTATGGTTTTGT+CGG - chr4_4:7218262-7218281 Msa0666990:intron 20.0%
!! AATAATGTTGTTAACCAAAT+AGG - chr4_4:7218532-7218551 Msa0666990:intron 20.0%
!!! TTGAAATTGTTTTAGCATTT+AGG + chr4_4:7218873-7218892 None:intergenic 20.0%
!! TTGTTATAAACCTGTATATT+TGG + chr4_4:7218975-7218994 None:intergenic 20.0%
!! TATAAATAAGATCATACATC+GGG - chr4_4:7219112-7219131 Msa0666990:intron 20.0%
!! AATTGCTTGATATTATGAAA+CGG + chr4_4:7220579-7220598 None:intergenic 20.0%
!!! CTTATATGTTTGTTTTCATT+TGG - chr4_4:7221421-7221440 Msa0666990:intron 20.0%
!!! GATGTAAGTTAAGATTTTAA+GGG + chr4_4:7221689-7221708 None:intergenic 20.0%
!! TAACAAAACTTTAATTAGAG+AGG - chr4_4:7221806-7221825 Msa0666990:CDS 20.0%
!! AACAAAACTTTAATTAGAGA+GGG - chr4_4:7221807-7221826 Msa0666990:CDS 20.0%
!! ATAAAATTAGTGATGAAAAC+TGG + chr4_4:7221928-7221947 None:intergenic 20.0%
!! CTAAAAGTAAAAACTTTCTT+TGG + chr4_4:7222149-7222168 None:intergenic 20.0%
!! TATAAAATTAGACACTGAAA+TGG - chr4_4:7222191-7222210 Msa0666990:intron 20.0%
!!! CAATTTTTATATTTTTTGGG+AGG + chr4_4:7222358-7222377 None:intergenic 20.0%
!! AAACATGTTTAATAAGAAAC+TGG + chr4_4:7222682-7222701 None:intergenic 20.0%
!!! CTGTATCAAAGATTTTAAAT+AGG + chr4_4:7222883-7222902 None:intergenic 20.0%
!!! AATTAAACCTTTTCTCATTT+AGG - chr4_4:7223004-7223023 Msa0666990:CDS 20.0%
!!! TTCAATTTTTCGCAAATTTT+GGG - chr4_4:7223221-7223240 Msa0666990:CDS 20.0%
!! GCAATGAATTTCATAAAAAA+TGG + chr4_4:7223347-7223366 None:intergenic 20.0%
!!! AATTTAGTTTGATGTAGAAA+AGG - chr4_4:7223519-7223538 Msa0666990:intron 20.0%
!!! TTATTCAGTTTTTATGCTTT+TGG - chr4_4:7223593-7223612 Msa0666990:CDS 20.0%
! AGAAGGATAAAAGGAAAAAT+TGG + chr4_4:7217498-7217517 None:intergenic 25.0%
! AATAACAGAAGAAGGATAAA+AGG + chr4_4:7217507-7217526 None:intergenic 25.0%
! TGAAAACTAATAACAGAAGA+AGG + chr4_4:7217515-7217534 None:intergenic 25.0%
! GCTTAAAAATGTGAACTTTA+TGG - chr4_4:7217702-7217721 Msa0666990:three_prime_UTR 25.0%
!!! AAATGGGTTTGATTTGAAAA+TGG - chr4_4:7217785-7217804 Msa0666990:three_prime_UTR 25.0%
! CAATCTGATTCATTATACAA+TGG + chr4_4:7218100-7218119 None:intergenic 25.0%
! TTGTGAGCATAATTAAGTTA+TGG - chr4_4:7218253-7218272 Msa0666990:intron 25.0%
! AGAACAAATGTTATACTACT+TGG + chr4_4:7218658-7218677 None:intergenic 25.0%
!! GTTGAAATTCTTATGCTTTT+TGG - chr4_4:7218708-7218727 Msa0666990:intron 25.0%
! CTTTGTAATAACAAAGACAA+AGG - chr4_4:7218894-7218913 Msa0666990:intron 25.0%
! TCATACATAATAGGATCATT+TGG + chr4_4:7219078-7219097 None:intergenic 25.0%
!!! CAAAGTATGTTATTTTTGTG+AGG - chr4_4:7219243-7219262 Msa0666990:intron 25.0%
!! ATCTATTTCTTGTCTAAAAC+AGG - chr4_4:7219280-7219299 Msa0666990:intron 25.0%
!!! TTGATTTTGATATGTTTGAG+TGG - chr4_4:7219543-7219562 Msa0666990:intron 25.0%
! ATTGTGAAGTGATTTATGTA+TGG + chr4_4:7219663-7219682 None:intergenic 25.0%
!! TATTCTTATGCCAATTTTTC+AGG - chr4_4:7219854-7219873 Msa0666990:intron 25.0%
!! TTGTTTTCAATACATACTTG+TGG - chr4_4:7220024-7220043 Msa0666990:intron 25.0%
! TAATCATACAGAATCAAGAT+TGG + chr4_4:7220317-7220336 None:intergenic 25.0%
! ATTCTGTATGATTATCTGTT+AGG - chr4_4:7220323-7220342 Msa0666990:intron 25.0%
! AAATTCAAGCTAAAGTTTCA+CGG + chr4_4:7220380-7220399 None:intergenic 25.0%
! TGTCAGTTTAATAAAGAACT+AGG + chr4_4:7220413-7220432 None:intergenic 25.0%
! AGTTCTTTATTAAACTGACA+TGG - chr4_4:7220413-7220432 Msa0666990:intron 25.0%
! GTTACGAGAAAAATAATTCA+TGG - chr4_4:7220476-7220495 Msa0666990:intron 25.0%
!! AACTTGTCTTTTGTAACTTT+TGG - chr4_4:7220635-7220654 Msa0666990:intron 25.0%
! TTATGTTCTATGATACGTAT+TGG - chr4_4:7220765-7220784 Msa0666990:intron 25.0%
! TATGTTCTATGATACGTATT+GGG - chr4_4:7220766-7220785 Msa0666990:intron 25.0%
! CTCTAGTTATAAAAACACAA+TGG + chr4_4:7221471-7221490 None:intergenic 25.0%
! CACTGCAAAAATACTATTTA+TGG - chr4_4:7221519-7221538 Msa0666990:intron 25.0%
! TTCACATAGAAGAAATGAAA+TGG - chr4_4:7221649-7221668 Msa0666990:intron 25.0%
!!! AAGTTAAGATTTTAAGGGAA+GGG + chr4_4:7221684-7221703 None:intergenic 25.0%
!!! TAAGTTAAGATTTTAAGGGA+AGG + chr4_4:7221685-7221704 None:intergenic 25.0%
!! GGATGTAAGTTAAGATTTTA+AGG + chr4_4:7221690-7221709 None:intergenic 25.0%
!! AGTACAAATTTTCTTCATAG+TGG + chr4_4:7221711-7221730 None:intergenic 25.0%
! AATAAATACTAGTACCACTT+CGG + chr4_4:7221744-7221763 None:intergenic 25.0%
! TACCTAGTTATGAATAACTT+GGG - chr4_4:7221974-7221993 Msa0666990:intron 25.0%
! TTATGAATAACTTGGGAAAA+AGG - chr4_4:7221981-7222000 Msa0666990:intron 25.0%
! TAAACCTATAATGATATGTG+CGG + chr4_4:7222080-7222099 None:intergenic 25.0%
! GAAACTGGAAAATCAAAAAT+AGG + chr4_4:7222522-7222541 None:intergenic 25.0%
! GCAAATGTTAGTAAGTTAAT+GGG - chr4_4:7222564-7222583 Msa0666990:intron 25.0%
! ACACGAGAAAATAACTAATA+AGG + chr4_4:7222927-7222946 None:intergenic 25.0%
! ATCACCTTGTATTATACAAA+GGG + chr4_4:7222969-7222988 None:intergenic 25.0%
!! CTTTTGAATTTAAACTGCTT+AGG + chr4_4:7223149-7223168 None:intergenic 25.0%
! CAAAATTTGCGAAAAATTGA+AGG + chr4_4:7223222-7223241 None:intergenic 25.0%
!! CTTCAATTTTTCGCAAATTT+TGG - chr4_4:7223220-7223239 Msa0666990:CDS 25.0%
AAACTATGCAGAAGATGAAA+TGG - chr4_4:7217457-7217476 Msa0666990:three_prime_UTR 30.0%
! GTTTTCATGGAATTTGTGAA+TGG + chr4_4:7217568-7217587 None:intergenic 30.0%
! TTTGTTGAAATGGGTTTGAT+TGG - chr4_4:7217778-7217797 Msa0666990:three_prime_UTR 30.0%
!!! TGATGTTTTTTCAGGCAAAT+GGG - chr4_4:7218054-7218073 Msa0666990:CDS 30.0%
ATCAGATTGTCCTTATATGT+CGG - chr4_4:7218111-7218130 Msa0666990:CDS 30.0%
AAGCATGGAAGAAATGATTT+GGG - chr4_4:7218151-7218170 Msa0666990:intron 30.0%
TCAAACAAGTCAATCCAAAA+AGG + chr4_4:7218304-7218323 None:intergenic 30.0%
!!! TTTTTGGATTGACTTGTTTG+AGG - chr4_4:7218303-7218322 Msa0666990:intron 30.0%
! TGACCTAGTTGAAAGTTTTA+AGG - chr4_4:7218571-7218590 Msa0666990:intron 30.0%
! TAGCCTTAAAACTTTCAACT+AGG + chr4_4:7218577-7218596 None:intergenic 30.0%
AACTACATACAACTCAATCT+AGG + chr4_4:7218635-7218654 None:intergenic 30.0%
CATTTGTTCTATTGTTCAAG+TGG - chr4_4:7218668-7218687 Msa0666990:intron 30.0%
TTCTATTGTTCAAGTGGAAT+AGG - chr4_4:7218674-7218693 Msa0666990:intron 30.0%
TCTATTGTTCAAGTGGAATA+GGG - chr4_4:7218675-7218694 Msa0666990:intron 30.0%
! TCATTTTCTATTGACGCTTT+TGG + chr4_4:7218739-7218758 None:intergenic 30.0%
ATGCAGTAAAAGATGATAAG+TGG + chr4_4:7218799-7218818 None:intergenic 30.0%
ACTTAATCTATTCATGAGTG+CGG - chr4_4:7218924-7218943 Msa0666990:intron 30.0%
! TATTTGGCTTATCACAGTTT+AGG + chr4_4:7218959-7218978 None:intergenic 30.0%
ATATGTACTCTTGAATTGTC+AGG - chr4_4:7219046-7219065 Msa0666990:intron 30.0%
GTGAAGATGTCATACATAAT+AGG + chr4_4:7219087-7219106 None:intergenic 30.0%
! AAAAAAAAGAGCACAGTTGT+GGG + chr4_4:7219141-7219160 None:intergenic 30.0%
! AAAAAAAAAGAGCACAGTTG+TGG + chr4_4:7219142-7219161 None:intergenic 30.0%
! AAAGTTTTCAATCACCAAAC+AGG - chr4_4:7219202-7219221 Msa0666990:intron 30.0%
CAAAAAACATAAGACCTGTT+TGG + chr4_4:7219219-7219238 None:intergenic 30.0%
!!! CAAACAGGTCTTATGTTTTT+TGG - chr4_4:7219217-7219236 Msa0666990:intron 30.0%
! TATTTCTTGTCTAAAACAGG+TGG - chr4_4:7219283-7219302 Msa0666990:intron 30.0%
GTGGAATGTAAAAGAAATGT+GGG - chr4_4:7219302-7219321 Msa0666990:intron 30.0%
AAAATGGTAAGATGAGCATT+TGG + chr4_4:7219444-7219463 None:intergenic 30.0%
TACAGAAGTTTCAACTATAG+GGG + chr4_4:7219489-7219508 None:intergenic 30.0%
GTACAGAAGTTTCAACTATA+GGG + chr4_4:7219490-7219509 None:intergenic 30.0%
! AATTGATTCTAACTTGAAGC+TGG - chr4_4:7219594-7219613 Msa0666990:intron 30.0%
! ATTGATTCTAACTTGAAGCT+GGG - chr4_4:7219595-7219614 Msa0666990:intron 30.0%
TTAAGAAGAAATGTTGTGTG+TGG + chr4_4:7219765-7219784 None:intergenic 30.0%
GAATTAGATTCAACAAGAAG+TGG + chr4_4:7219912-7219931 None:intergenic 30.0%
! TTTTCAATACATACTTGTGG+TGG - chr4_4:7220027-7220046 Msa0666990:intron 30.0%
! TGTGTATTGATGAACTGATA+CGG + chr4_4:7220078-7220097 None:intergenic 30.0%
TTTGTCTACTCTATTCTGAT+AGG - chr4_4:7220106-7220125 Msa0666990:intron 30.0%
! GTGATTTGAACTTTTGTAGA+TGG - chr4_4:7220134-7220153 Msa0666990:intron 30.0%
! ACAAGTTTTGCTCAAAAACA+TGG + chr4_4:7220622-7220641 None:intergenic 30.0%
! TTTTGGCCAAATTGTGATTT+GGG - chr4_4:7220652-7220671 Msa0666990:intron 30.0%
ACAAACAAACTGCTTTGATT+TGG + chr4_4:7220689-7220708 None:intergenic 30.0%
! TTTTTGTTGAGATGCATTCT+TGG - chr4_4:7220728-7220747 Msa0666990:intron 30.0%
AACTGATGATAGAAACCTTA+GGG - chr4_4:7220802-7220821 Msa0666990:intron 30.0%
AAAGAGAAAAGAGTCAAACA+AGG - chr4_4:7221213-7221232 Msa0666990:CDS 30.0%
AAGAGTTAGTTACAGCAATA+AGG + chr4_4:7221239-7221258 None:intergenic 30.0%
AAAGTTAGTTACATGCGAAT+AGG + chr4_4:7221304-7221323 None:intergenic 30.0%
AGTGTCAATACATAGAATGA+GGG + chr4_4:7221503-7221522 None:intergenic 30.0%
!! AGTTAAGATTTTAAGGGAAG+GGG + chr4_4:7221683-7221702 None:intergenic 30.0%
! TTTCTAGTAGTGAATGTTTG+AGG - chr4_4:7221949-7221968 Msa0666990:intron 30.0%
TTCTAGTAGTGAATGTTTGA+GGG - chr4_4:7221950-7221969 Msa0666990:intron 30.0%
GTACCTAGTTATGAATAACT+TGG - chr4_4:7221973-7221992 Msa0666990:intron 30.0%
TTCCCAAGTTATTCATAACT+AGG + chr4_4:7221979-7221998 None:intergenic 30.0%
! AAAACTTTCTTTGGGAATGT+GGG + chr4_4:7222140-7222159 None:intergenic 30.0%
! AAAAACTTTCTTTGGGAATG+TGG + chr4_4:7222141-7222160 None:intergenic 30.0%
TGAAATGGCAAAATACATAC+AGG - chr4_4:7222206-7222225 Msa0666990:intron 30.0%
GGCAAATGTTAGTAAGTTAA+TGG - chr4_4:7222563-7222582 Msa0666990:intron 30.0%
!!! TGGGTATGTTAGTTTTTACA+TGG - chr4_4:7222583-7222602 Msa0666990:intron 30.0%
ATACTATAAAGAGCAGATGT+GGG + chr4_4:7222774-7222793 None:intergenic 30.0%
CTTTATAGTATCCGAACATT+AGG - chr4_4:7222783-7222802 Msa0666990:intron 30.0%
! TGTTGATTATTGTAGTGACT+AGG - chr4_4:7222848-7222867 Msa0666990:intron 30.0%
TCACCTTGTATTATACAAAG+GGG + chr4_4:7222968-7222987 None:intergenic 30.0%
GATCACCTTGTATTATACAA+AGG + chr4_4:7222970-7222989 None:intergenic 30.0%
TAACAATTTCCTTCACTTTC+TGG + chr4_4:7223045-7223064 None:intergenic 30.0%
GAAAGTGAAGGAAATTGTTA+CGG - chr4_4:7223045-7223064 Msa0666990:CDS 30.0%
AGAGAATCTGCTGAAAATTA+AGG - chr4_4:7223474-7223493 Msa0666990:intron 30.0%
GAGAATCTGCTGAAAATTAA+GGG - chr4_4:7223475-7223494 Msa0666990:intron 30.0%
!!! AAGTGTTTTCCTTTAGCTTT+AGG - chr4_4:7223628-7223647 Msa0666990:CDS 30.0%
!! TAGGTGTTAGAAGTTTTGAT+TGG - chr4_4:7223647-7223666 Msa0666990:CDS 30.0%
!! TTTTGATTGGAATGCTTGTA+TGG - chr4_4:7223660-7223679 Msa0666990:CDS 30.0%
!!! TTTTGTGTGGATTAGTATCT+TGG - chr4_4:7223727-7223746 Msa0666990:exon 30.0%
TTTGACGAGAAACTTTGACT+TGG + chr4_4:7217387-7217406 None:intergenic 35.0%
GTTTGCGTTAAAGGATTGTT+GGG + chr4_4:7217441-7217460 None:intergenic 35.0%
AGTTTGCGTTAAAGGATTGT+TGG + chr4_4:7217442-7217461 None:intergenic 35.0%
! TTCTGCATAGTTTGCGTTAA+AGG + chr4_4:7217450-7217469 None:intergenic 35.0%
GTTCTTGATGAATGTGAAGT+GGG + chr4_4:7217590-7217609 None:intergenic 35.0%
TGTTCTTGATGAATGTGAAG+TGG + chr4_4:7217591-7217610 None:intergenic 35.0%
GAGATTTCTTGACGTGATTA+GGG + chr4_4:7217647-7217666 None:intergenic 35.0%
TGAGATTTCTTGACGTGATT+AGG + chr4_4:7217648-7217667 None:intergenic 35.0%
AATCACGTCAAGAAATCTCA+AGG - chr4_4:7217648-7217667 Msa0666990:intron 35.0%
AGTAGATGCAACTCTACTAT+AGG - chr4_4:7217956-7217975 Msa0666990:CDS 35.0%
GTAGATGCAACTCTACTATA+GGG - chr4_4:7217957-7217976 Msa0666990:CDS 35.0%
AACTCTACTATAGGGTATAG+TGG - chr4_4:7217965-7217984 Msa0666990:CDS 35.0%
!!! GAAAGCTGTGATGTTTTTTC+AGG - chr4_4:7218046-7218065 Msa0666990:CDS 35.0%
!!! GTGATGTTTTTTCAGGCAAA+TGG - chr4_4:7218053-7218072 Msa0666990:CDS 35.0%
TCCTTATATGTCGGATCAAT+TGG - chr4_4:7218120-7218139 Msa0666990:CDS 35.0%
CAAGCATGGAAGAAATGATT+TGG - chr4_4:7218150-7218169 Msa0666990:intron 35.0%
AGCATGGAAGAAATGATTTG+GGG - chr4_4:7218152-7218171 Msa0666990:intron 35.0%
CTCTTCAAATCACAATCATG+TGG + chr4_4:7218199-7218218 None:intergenic 35.0%
CACATGATTGTGATTTGAAG+AGG - chr4_4:7218197-7218216 Msa0666990:intron 35.0%
!!! TTAAGTTATGGTTTTGTCGG+TGG - chr4_4:7218265-7218284 Msa0666990:intron 35.0%
! GAAAACAGCTTATGACTTGT+CGG - chr4_4:7218372-7218391 Msa0666990:intron 35.0%
GATAAGCTATAGAGAGCTTA+TGG + chr4_4:7218418-7218437 None:intergenic 35.0%
CTGTGATAAGCCAAATATAC+AGG - chr4_4:7218962-7218981 Msa0666990:intron 35.0%
AATGTGAGACTATCGAATTC+TGG - chr4_4:7219014-7219033 Msa0666990:intron 35.0%
! AAAAAAAGAGCACAGTTGTG+GGG + chr4_4:7219140-7219159 None:intergenic 35.0%
GGTGGAATGTAAAAGAAATG+TGG - chr4_4:7219301-7219320 Msa0666990:intron 35.0%
GGAAAAAGGCTAATGTTTGT+TGG - chr4_4:7219336-7219355 Msa0666990:intron 35.0%
TTGGAGATTCCCTTAATAGA+GGG - chr4_4:7219355-7219374 Msa0666990:intron 35.0%
TATCCATTGCCCTCTATTAA+GGG + chr4_4:7219367-7219386 None:intergenic 35.0%
ATATCCATTGCCCTCTATTA+AGG + chr4_4:7219368-7219387 None:intergenic 35.0%
CGTACAGAAGTTTCAACTAT+AGG + chr4_4:7219491-7219510 None:intergenic 35.0%
TTGATATGTTTGAGTGGTGT+CGG - chr4_4:7219549-7219568 Msa0666990:intron 35.0%
TTGATTCTAACTTGAAGCTG+GGG - chr4_4:7219596-7219615 Msa0666990:intron 35.0%
CAAATAATGAGACTCTCAAG+TGG + chr4_4:7219826-7219845 None:intergenic 35.0%
GCATTGTACTCCTGAAAAAT+TGG + chr4_4:7219867-7219886 None:intergenic 35.0%
ATACGGACAATAGCTTAACT+GGG + chr4_4:7220061-7220080 None:intergenic 35.0%
!! AGATGGACTGATGAAGAAAA+TGG - chr4_4:7220151-7220170 Msa0666990:intron 35.0%
! GACTTTAGAAGAAACCCAAT+CGG + chr4_4:7220233-7220252 None:intergenic 35.0%
AAAAAGACACGTTTCTTGAG+CGG + chr4_4:7220259-7220278 None:intergenic 35.0%
CTGTATGATTATCTGTTAGG+AGG - chr4_4:7220326-7220345 Msa0666990:intron 35.0%
! CTTTTGGCCAAATTGTGATT+TGG - chr4_4:7220651-7220670 Msa0666990:intron 35.0%
GGAATTCCCAAATCACAATT+TGG + chr4_4:7220661-7220680 None:intergenic 35.0%
!! AACTGCTTTGATTTGGCATT+TGG + chr4_4:7220682-7220701 None:intergenic 35.0%
! CAAAGCAGTTTGTTTGTGAT+TGG - chr4_4:7220692-7220711 Msa0666990:intron 35.0%
AGGTTTCTATCATCAGTTCA+GGG + chr4_4:7220800-7220819 None:intergenic 35.0%
AAGGTTTCTATCATCAGTTC+AGG + chr4_4:7220801-7220820 None:intergenic 35.0%
GAACTGATGATAGAAACCTT+AGG - chr4_4:7220801-7220820 Msa0666990:intron 35.0%
TTGGACCTAACCTAATTTCT+TGG - chr4_4:7220838-7220857 Msa0666990:intron 35.0%
TTCTTGACCACCAAGAAATT+AGG + chr4_4:7220851-7220870 None:intergenic 35.0%
CAAAAGCAAACTCAGAATCA+TGG - chr4_4:7221111-7221130 Msa0666990:intron 35.0%
CAGTGTCAATACATAGAATG+AGG + chr4_4:7221504-7221523 None:intergenic 35.0%
! CGTGTAGTAAGCATTTTGTT+CGG - chr4_4:7221582-7221601 Msa0666990:intron 35.0%
GAAATGTTTGAGCTACAGAT+TGG - chr4_4:7221607-7221626 Msa0666990:intron 35.0%
TAGAGAGGGAAATTTAGAGA+TGG - chr4_4:7221821-7221840 Msa0666990:CDS 35.0%
TCTAGTAGTGAATGTTTGAG+GGG - chr4_4:7221951-7221970 Msa0666990:intron 35.0%
ATTACTAGAGAATGACCAAG+TGG + chr4_4:7222018-7222037 None:intergenic 35.0%
!!! ACATCAAAGGAGTTTTAAGC+AGG + chr4_4:7222625-7222644 None:intergenic 35.0%
GATACTATAAAGAGCAGATG+TGG + chr4_4:7222775-7222794 None:intergenic 35.0%
GTGTTTGGATTCCTAATGTT+CGG + chr4_4:7222797-7222816 None:intergenic 35.0%
CATCCCCTTTGTATAATACA+AGG - chr4_4:7222962-7222981 Msa0666990:intron 35.0%
TATTGATGTCGAGAGCTATT+GGG - chr4_4:7223080-7223099 Msa0666990:CDS 35.0%
CAGAAAGTTGAGTAACATTG+AGG + chr4_4:7223179-7223198 None:intergenic 35.0%
!! CTTTCTGAGTATCGAAAAGA+TGG - chr4_4:7223192-7223211 Msa0666990:CDS 35.0%
GAGGATTTGACAATTGTTCA+GGG + chr4_4:7223257-7223276 None:intergenic 35.0%
TGTATGCAATCAGAGTAAGA+CGG + chr4_4:7223279-7223298 None:intergenic 35.0%
CTTACTCTGATTGCATACAT+TGG - chr4_4:7223280-7223299 Msa0666990:intron 35.0%
! TGCTCTGTTGTTTGATACAA+GGG - chr4_4:7223448-7223467 Msa0666990:intron 35.0%
CTTCTAACACCTAAAGCTAA+AGG + chr4_4:7223640-7223659 None:intergenic 35.0%
! GGTTACAAGCATTTTTGACA+TGG - chr4_4:7223702-7223721 Msa0666990:CDS 35.0%
! TTTTGACATGGTCTTTTGTG+TGG - chr4_4:7223714-7223733 Msa0666990:exon 35.0%
! GATCTTTTAACCATGTGTAG+AGG - chr4_4:7223749-7223768 Msa0666990:five_prime_UTR 35.0%
GAATTCAAATCCTCTACACA+TGG + chr4_4:7223762-7223781 None:intergenic 35.0%
!! GAGGATTTGAATTCTAGTTC+TGG - chr4_4:7223768-7223787 Msa0666990:five_prime_UTR 35.0%
TGTGAATGGTACTACCATTG+TGG + chr4_4:7217554-7217573 None:intergenic 40.0%
!! GAATGTGAAGTGGGTTTTCA+TGG + chr4_4:7217581-7217600 None:intergenic 40.0%
TTGACGTGATTAGGGAGATT+AGG + chr4_4:7217639-7217658 None:intergenic 40.0%
CTACTATAGGGTATAGTGGT+CGG - chr4_4:7217969-7217988 Msa0666990:CDS 40.0%
ATAGTGGTCGGAAAATTGCT+CGG - chr4_4:7217981-7218000 Msa0666990:CDS 40.0%
GTTCAAAGAGTTCGAGTCAT+CGG - chr4_4:7218011-7218030 Msa0666990:CDS 40.0%
GCCAATTGATCCGACATATA+AGG + chr4_4:7218124-7218143 None:intergenic 40.0%
! ATGATTTGGGGTATCAGCAT+TGG - chr4_4:7218164-7218183 Msa0666990:intron 40.0%
! GTACTAGTCGATGACCTTTT+TGG - chr4_4:7218287-7218306 Msa0666990:intron 40.0%
TTAACCAAATAGGACCTAGC+TGG - chr4_4:7218542-7218561 Msa0666990:intron 40.0%
GTTCAAGTGGAATAGGGAAT+TGG - chr4_4:7218681-7218700 Msa0666990:intron 40.0%
! AAAAAAGAGCACAGTTGTGG+GGG + chr4_4:7219139-7219158 None:intergenic 40.0%
GAAATGTGGGAAAAGTTGAG+AGG - chr4_4:7219315-7219334 Msa0666990:intron 40.0%
GGGAAAAGTTGAGAGGAAAA+AGG - chr4_4:7219322-7219341 Msa0666990:intron 40.0%
GTTGGAGATTCCCTTAATAG+AGG - chr4_4:7219354-7219373 Msa0666990:intron 40.0%
ATTCCCTTAATAGAGGGCAA+TGG - chr4_4:7219361-7219380 Msa0666990:intron 40.0%
TAGAGGGCAATGGATATCTA+TGG - chr4_4:7219371-7219390 Msa0666990:intron 40.0%
GACATTGATCTCTTATCAGC+AGG + chr4_4:7219420-7219439 None:intergenic 40.0%
! TCTTACCATTTTCAGAGCAG+AGG - chr4_4:7219452-7219471 Msa0666990:intron 40.0%
!! TCATACCTCTGCTCTGAAAA+TGG + chr4_4:7219460-7219479 None:intergenic 40.0%
!!! GTGTCGGTTGGAATTGATTT+TGG - chr4_4:7219565-7219584 Msa0666990:intron 40.0%
TGGAATGACAGAAGAAGGTA+CGG + chr4_4:7219745-7219764 None:intergenic 40.0%
ATAATGAGACTCTCAAGTGG+TGG + chr4_4:7219823-7219842 None:intergenic 40.0%
GAGTCTCATTATTTGCACAC+TGG - chr4_4:7219831-7219850 Msa0666990:intron 40.0%
ATGCAACAGTTGAATTCCTC+TGG - chr4_4:7219883-7219902 Msa0666990:intron 40.0%
TGCAACAGTTGAATTCCTCT+GGG - chr4_4:7219884-7219903 Msa0666990:intron 40.0%
TGAATCTAATTCCGACGATC+CGG - chr4_4:7219920-7219939 Msa0666990:intron 40.0%
TGAATCACAGACTGGATGAA+CGG - chr4_4:7219943-7219962 Msa0666990:intron 40.0%
GATACGGACAATAGCTTAAC+TGG + chr4_4:7220062-7220081 None:intergenic 40.0%
GGAGCTTGTGAAGAATTAGA+CGG - chr4_4:7220172-7220191 Msa0666990:intron 40.0%
! CTTTTGCTAGCAAGCATTCT+TGG - chr4_4:7220354-7220373 Msa0666990:intron 40.0%
AGATGCATTCTTGGAACTCT+TGG - chr4_4:7220737-7220756 Msa0666990:intron 40.0%
GACCTAACCTAATTTCTTGG+TGG - chr4_4:7220841-7220860 Msa0666990:intron 40.0%
GACCACCAAGAAATTAGGTT+AGG + chr4_4:7220846-7220865 None:intergenic 40.0%
TACGTTGGAATGAGCTACTA+GGG + chr4_4:7220880-7220899 None:intergenic 40.0%
TTAGCAAGACTTCTGTACGT+TGG + chr4_4:7220895-7220914 None:intergenic 40.0%
TCTTGCTAACACAACTTCAG+AGG - chr4_4:7220906-7220925 Msa0666990:CDS 40.0%
ACACAACTTCAGAGGATTTG+TGG - chr4_4:7220914-7220933 Msa0666990:CDS 40.0%
! ACAGTACAGGATAGGTTGAA+AGG + chr4_4:7220975-7220994 None:intergenic 40.0%
AGATTGTCACAGTACAGGAT+AGG + chr4_4:7220983-7221002 None:intergenic 40.0%
CTGTGACAATCTCTGCATTA+TGG - chr4_4:7220991-7221010 Msa0666990:CDS 40.0%
! TCTGAGGTTCCAAAGTCTAA+GGG - chr4_4:7221087-7221106 Msa0666990:intron 40.0%
! TGCTTTTGTCCCTTAGACTT+TGG + chr4_4:7221099-7221118 None:intergenic 40.0%
TCCACATAGTTCACTAGATC+TGG - chr4_4:7221138-7221157 Msa0666990:CDS 40.0%
CCACATAGTTCACTAGATCT+GGG - chr4_4:7221139-7221158 Msa0666990:CDS 40.0%
CACATAGTTCACTAGATCTG+GGG - chr4_4:7221140-7221159 Msa0666990:CDS 40.0%
AGTGTGGAAACAGAAAAACC+AGG + chr4_4:7221372-7221391 None:intergenic 40.0%
ACTACACGAACAATGTGACA+TGG + chr4_4:7221570-7221589 None:intergenic 40.0%
GTCATTCTCTAGTAATTGCG+TGG - chr4_4:7222022-7222041 Msa0666990:intron 40.0%
ACTGCCGCACATATCATTAT+AGG - chr4_4:7222073-7222092 Msa0666990:intron 40.0%
CATGTGTCAAGAAAACTTGC+TGG - chr4_4:7222235-7222254 Msa0666990:intron 40.0%
! CTCACATCAGTCTTTTCACA+AGG + chr4_4:7222391-7222410 None:intergenic 40.0%
AAAACTCCTTTGATGTCCAC+TGG - chr4_4:7222629-7222648 Msa0666990:intron 40.0%
TCCAACTGAGCTATCTACTT+CGG - chr4_4:7222655-7222674 Msa0666990:intron 40.0%
AAACTACAGTGTGTGGTGTT+TGG + chr4_4:7222812-7222831 None:intergenic 40.0%
CAGTGTAAAACTACAGTGTG+TGG + chr4_4:7222819-7222838 None:intergenic 40.0%
CAATAGCTCTCGACATCAAT+AGG + chr4_4:7223081-7223100 None:intergenic 40.0%
CTATTGATGTCGAGAGCTAT+TGG - chr4_4:7223079-7223098 Msa0666990:CDS 40.0%
ATTGATGTCGAGAGCTATTG+GGG - chr4_4:7223081-7223100 Msa0666990:CDS 40.0%
GGAGGATTTGACAATTGTTC+AGG + chr4_4:7223258-7223277 None:intergenic 40.0%
AGTAACTCATTCCACGTATC+AGG + chr4_4:7223321-7223340 None:intergenic 40.0%
!! TTGCTGCTTTCCAAATGCAA+AGG + chr4_4:7223421-7223440 None:intergenic 40.0%
! CTGCTCTGTTGTTTGATACA+AGG - chr4_4:7223447-7223466 Msa0666990:intron 40.0%
!! GGTGTTGCTTCACAAAATCA+AGG - chr4_4:7223681-7223700 Msa0666990:CDS 40.0%
GCATTCTCAACTCTCCACAA+TGG - chr4_4:7217537-7217556 Msa0666990:three_prime_UTR 45.0%
!! CAATTGGCTTGTCACAAGCA+TGG - chr4_4:7218136-7218155 Msa0666990:CDS 45.0%
TCTATTCATGAGTGCGGCAA+TGG - chr4_4:7218930-7218949 Msa0666990:intron 45.0%
CTATTCATGAGTGCGGCAAT+GGG - chr4_4:7218931-7218950 Msa0666990:intron 45.0%
! AAAAAGAGCACAGTTGTGGG+GGG + chr4_4:7219138-7219157 None:intergenic 45.0%
!! TATGTTTGAGTGGTGTCGGT+TGG - chr4_4:7219553-7219572 Msa0666990:intron 45.0%
GTGTGTGGAATGACAGAAGA+AGG + chr4_4:7219750-7219769 None:intergenic 45.0%
TCATCCAGTCTGTGATTCAC+CGG + chr4_4:7219942-7219961 None:intergenic 45.0%
GCATGCTTCAGAACTGAATC+AGG + chr4_4:7219978-7219997 None:intergenic 45.0%
! ACATACTTGTGGTGGAGACA+AGG - chr4_4:7220035-7220054 Msa0666990:intron 45.0%
TGTGAAGAATTAGACGGACG+AGG - chr4_4:7220178-7220197 Msa0666990:intron 45.0%
ATTCTCACCAGAGATGTGTC+GGG + chr4_4:7220294-7220313 None:intergenic 45.0%
GATTCTCACCAGAGATGTGT+CGG + chr4_4:7220295-7220314 None:intergenic 45.0%
GTACGTTGGAATGAGCTACT+AGG + chr4_4:7220881-7220900 None:intergenic 45.0%
TGCAGAGATTGTCACAGTAC+AGG + chr4_4:7220988-7221007 None:intergenic 45.0%
! ATCAGCATGCTGGGTTGTTT+TGG + chr4_4:7221044-7221063 None:intergenic 45.0%
TGTAAGCAGATCAGCATGCT+GGG + chr4_4:7221053-7221072 None:intergenic 45.0%
TTGTAAGCAGATCAGCATGC+TGG + chr4_4:7221054-7221073 None:intergenic 45.0%
!! CTTAGACTTTGGAACCTCAG+AGG + chr4_4:7221088-7221107 None:intergenic 45.0%
!! CTCTGAGGTTCCAAAGTCTA+AGG - chr4_4:7221086-7221105 Msa0666990:intron 45.0%
CCCAGATCTAGTGAACTATG+TGG + chr4_4:7221142-7221161 None:intergenic 45.0%
! TTCACTAGATCTGGGGTTGA+AGG - chr4_4:7221147-7221166 Msa0666990:CDS 45.0%
! TCACTAGATCTGGGGTTGAA+GGG - chr4_4:7221148-7221167 Msa0666990:CDS 45.0%
! GAGCTACAGATTGGTTCAGT+TGG - chr4_4:7221616-7221635 Msa0666990:intron 45.0%
TACTAGTACCACTTCGGAGA+GGG + chr4_4:7221738-7221757 None:intergenic 45.0%
ATACTAGTACCACTTCGGAG+AGG + chr4_4:7221739-7221758 None:intergenic 45.0%
TAATGATATGTGCGGCAGTG+CGG + chr4_4:7222072-7222091 None:intergenic 45.0%
ACATTCCCTTTCCCTTTGCT+AGG - chr4_4:7222100-7222119 Msa0666990:intron 45.0%
CTTCATTGGGACCTAGCAAA+GGG + chr4_4:7222114-7222133 None:intergenic 45.0%
GGAATGTGGGATGCTTCATT+GGG + chr4_4:7222127-7222146 None:intergenic 45.0%
GGAAAACCAGTGGACATCAA+AGG + chr4_4:7222638-7222657 None:intergenic 45.0%
TAGCTCAGTTGGAAAACCAG+TGG + chr4_4:7222648-7222667 None:intergenic 45.0%
TCCGAAGTAGATAGCTCAGT+TGG + chr4_4:7222659-7222678 None:intergenic 45.0%
TAAAGAGCAGATGTGGGATG+TGG + chr4_4:7222768-7222787 None:intergenic 45.0%
CTCGGCTCCTAAATGAGAAA+AGG + chr4_4:7223014-7223033 None:intergenic 45.0%
CACTTTCTGGATTCCACTCT+CGG + chr4_4:7223032-7223051 None:intergenic 45.0%
GAGTGGAATCCAGAAAGTGA+AGG - chr4_4:7223033-7223052 Msa0666990:CDS 45.0%
! TTTGCCAACAATGAGCACTG+TGG - chr4_4:7223116-7223135 Msa0666990:CDS 45.0%
TTCTCCACAGTGCTCATTGT+TGG + chr4_4:7223123-7223142 None:intergenic 45.0%
ATGCAATCAGAGTAAGACGG+AGG + chr4_4:7223276-7223295 None:intergenic 45.0%
ATAACCGCGACCTTTGCATT+TGG - chr4_4:7223408-7223427 Msa0666990:intron 45.0%
CTTTCCAAATGCAAAGGTCG+CGG + chr4_4:7223415-7223434 None:intergenic 45.0%
!!! TTATTAATTAATTTTTTGTT+AGG - chr4_4:7222542-7222561 Msa0666990:intron 5.0%
GAGTCATCGGAGAGTGAGTT+CGG - chr4_4:7218024-7218043 Msa0666990:CDS 50.0%
! TGGGGTATCAGCATTGGAGA+TGG - chr4_4:7218170-7218189 Msa0666990:intron 50.0%
CGTTCCAGCTAGGTCCTATT+TGG + chr4_4:7218549-7218568 None:intergenic 50.0%
CTAGGTCATTCGTTCCAGCT+AGG + chr4_4:7218559-7218578 None:intergenic 50.0%
TCTGTGATTCACCGGATCGT+CGG + chr4_4:7219934-7219953 None:intergenic 50.0%
!! TTCTGAAGCATGCAGCACTC+TGG - chr4_4:7219985-7220004 Msa0666990:intron 50.0%
! TCTGAAGCATGCAGCACTCT+GGG - chr4_4:7219986-7220005 Msa0666990:intron 50.0%
ATTAGACGGACGAGGAGCTA+TGG - chr4_4:7220186-7220205 Msa0666990:intron 50.0%
TTCTCACCAGAGATGTGTCG+GGG + chr4_4:7220293-7220312 None:intergenic 50.0%
AAGATAGACGCAGGACCCTA+AGG + chr4_4:7220820-7220839 None:intergenic 50.0%
TTAGGGTCCTGCGTCTATCT+TGG - chr4_4:7220819-7220838 Msa0666990:intron 50.0%
GTTAGGTCCAAGATAGACGC+AGG + chr4_4:7220829-7220848 None:intergenic 50.0%
!! GAGCACTGGTTTGTGTGACA+AGG + chr4_4:7221017-7221036 None:intergenic 50.0%
!!! GTTGTTTTGGCATGGAGCAC+TGG + chr4_4:7221031-7221050 None:intergenic 50.0%
!!! CATGCTGGGTTGTTTTGGCA+TGG + chr4_4:7221039-7221058 None:intergenic 50.0%
CAAAGCCTTTGTCACCTCTG+AGG - chr4_4:7221071-7221090 Msa0666990:intron 50.0%
TGGAACCTCAGAGGTGACAA+AGG + chr4_4:7221079-7221098 None:intergenic 50.0%
AGTCTCAGCACAAGTCTCAC+TGG - chr4_4:7221263-7221282 Msa0666990:CDS 50.0%
GTTACATGCGAATAGGCGAC+TGG + chr4_4:7221297-7221316 None:intergenic 50.0%
AGGGATCTCAGTTGAGAGTG+TGG + chr4_4:7221388-7221407 None:intergenic 50.0%
AAGGAGTCGTAGATGCCACT+TGG - chr4_4:7222000-7222019 Msa0666990:intron 50.0%
TGGGACCTAGCAAAGGGAAA+GGG + chr4_4:7222108-7222127 None:intergenic 50.0%
TTGGGACCTAGCAAAGGGAA+AGG + chr4_4:7222109-7222128 None:intergenic 50.0%
GCTTCATTGGGACCTAGCAA+AGG + chr4_4:7222115-7222134 None:intergenic 50.0%
GGGAATGTGGGATGCTTCAT+TGG + chr4_4:7222128-7222147 None:intergenic 50.0%
GACTGATGTGAGACGAGAAG+CGG - chr4_4:7222399-7222418 Msa0666990:intron 50.0%
TCTCATTTAGGAGCCGAGAG+TGG - chr4_4:7223016-7223035 Msa0666990:CDS 50.0%
GACAATTGTTCAGGGCGAAG+AGG + chr4_4:7223249-7223268 None:intergenic 50.0%
! TGCATACATTGGTGCTTGCC+AGG - chr4_4:7223291-7223310 Msa0666990:intron 50.0%
! GCATACATTGGTGCTTGCCA+GGG - chr4_4:7223292-7223311 Msa0666990:intron 50.0%
! CATACATTGGTGCTTGCCAG+GGG - chr4_4:7223293-7223312 Msa0666990:intron 50.0%
CAACAAGAAGTGGAGCCCAG+AGG + chr4_4:7219902-7219921 None:intergenic 55.0%
CGATCCGGTGAATCACAGAC+TGG - chr4_4:7219935-7219954 Msa0666990:intron 55.0%
AGGAGCTATGGAGTTGGCCA+TGG - chr4_4:7220198-7220217 Msa0666990:intron 55.0%
GGAGCTATGGAGTTGGCCAT+GGG - chr4_4:7220199-7220218 Msa0666990:intron 55.0%
TACTTCCTCCCTCTCCGAAG+TGG - chr4_4:7221727-7221746 Msa0666990:intron 55.0%
TAGTACCACTTCGGAGAGGG+AGG + chr4_4:7221735-7221754 None:intergenic 55.0%
GTCGAGAGCTATTGGGGAAG+TGG - chr4_4:7223087-7223106 Msa0666990:CDS 55.0%
TTCCACGTATCAGGTACCCC+TGG + chr4_4:7223312-7223331 None:intergenic 55.0%
GGTCGGAAAATTGCTCGGCG+TGG - chr4_4:7217986-7218005 Msa0666990:CDS 60.0%
CGGAAAATTGCTCGGCGTGG+CGG - chr4_4:7217989-7218008 Msa0666990:CDS 60.0%
CGGACGAGGAGCTATGGAGT+TGG - chr4_4:7220192-7220211 Msa0666990:intron 60.0%
TGGAGTTGGCCATGGGAGCA+TGG - chr4_4:7220206-7220225 Msa0666990:intron 60.0%
! GGAGTTGGCCATGGGAGCAT+GGG - chr4_4:7220207-7220226 Msa0666990:intron 60.0%
! CATGGGAGCATGGGCCGATT+GGG - chr4_4:7220216-7220235 Msa0666990:intron 60.0%
CCAGAGATGTGTCGGGGACA+TGG + chr4_4:7220287-7220306 None:intergenic 60.0%
CCATGTCCCCGACACATCTC+TGG - chr4_4:7220284-7220303 Msa0666990:intron 60.0%
ATATGTGCGGCAGTGCGGAG+AGG + chr4_4:7222067-7222086 None:intergenic 60.0%
!! TGCCAGGGGTACCTGATACG+TGG - chr4_4:7223307-7223326 Msa0666990:intron 60.0%
CCAATCGGCCCATGCTCCCA+TGG + chr4_4:7220218-7220237 None:intergenic 65.0%
! CCATGGGAGCATGGGCCGAT+TGG - chr4_4:7220215-7220234 Msa0666990:intron 65.0%
TGCGGCAGTGCGGAGAGGAA+GGG + chr4_4:7222062-7222081 None:intergenic 65.0%
GCGGCAGTGCGGAGAGGAAG+GGG + chr4_4:7222061-7222080 None:intergenic 70.0%
GTGCGGCAGTGCGGAGAGGA+AGG + chr4_4:7222063-7222082 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 7217369 7223822 7217369 ID=Msa0666990;Name=Msa0666990
chr4_4 mRNA 7217369 7223822 7217369 ID=Msa0666990-mRNA-1;Parent=Msa0666990;Name=Msa0666990-mRNA-1;_AED=0.27;_eAED=0.27;_QI=93|0.83|0.85|1|0.83|0.71|7|390|419
chr4_4 exon 7217369 7217613 7217369 ID=Msa0666990-mRNA-1:exon:2364;Parent=Msa0666990-mRNA-1
chr4_4 exon 7217690 7218165 7217690 ID=Msa0666990-mRNA-1:exon:2363;Parent=Msa0666990-mRNA-1
chr4_4 exon 7220886 7221038 7220886 ID=Msa0666990-mRNA-1:exon:2362;Parent=Msa0666990-mRNA-1
chr4_4 exon 7221119 7221315 7221119 ID=Msa0666990-mRNA-1:exon:2361;Parent=Msa0666990-mRNA-1
chr4_4 exon 7221799 7221889 7221799 ID=Msa0666990-mRNA-1:exon:2360;Parent=Msa0666990-mRNA-1
chr4_4 exon 7222973 7223252 7222973 ID=Msa0666990-mRNA-1:exon:2359;Parent=Msa0666990-mRNA-1
chr4_4 exon 7223522 7223822 7223522 ID=Msa0666990-mRNA-1:exon:2358;Parent=Msa0666990-mRNA-1
chr4_4 five_prime_UTR 7223730 7223822 7223730 ID=Msa0666990-mRNA-1:five_prime_utr;Parent=Msa0666990-mRNA-1
chr4_4 CDS 7223522 7223729 7223522 ID=Msa0666990-mRNA-1:cds;Parent=Msa0666990-mRNA-1
chr4_4 CDS 7222973 7223252 7222973 ID=Msa0666990-mRNA-1:cds;Parent=Msa0666990-mRNA-1
chr4_4 CDS 7221799 7221889 7221799 ID=Msa0666990-mRNA-1:cds;Parent=Msa0666990-mRNA-1
chr4_4 CDS 7221119 7221315 7221119 ID=Msa0666990-mRNA-1:cds;Parent=Msa0666990-mRNA-1
chr4_4 CDS 7220886 7221038 7220886 ID=Msa0666990-mRNA-1:cds;Parent=Msa0666990-mRNA-1
chr4_4 CDS 7217835 7218165 7217835 ID=Msa0666990-mRNA-1:cds;Parent=Msa0666990-mRNA-1
chr4_4 three_prime_UTR 7217690 7217834 7217690 ID=Msa0666990-mRNA-1:three_prime_utr;Parent=Msa0666990-mRNA-1
chr4_4 three_prime_UTR 7217369 7217613 7217369 ID=Msa0666990-mRNA-1:three_prime_utr;Parent=Msa0666990-mRNA-1
Gene Sequence

>Msa0666990

ATGCAGAAGATGAAATGGAACAAAAAGAAAGTTCCAATTTTTCCTTTTATCCTTCTTCTGTTATTAGTTTTCATAGCATTCTCAACTCTCCACAATGGTAGTACCATTCACAAATTCCATGAAAACCCACTTCACATTCATCAAGAACAAGCTTCTTCAACTACATATGTTAAACCTAATCTCCCTAATCACGTCAAGAAATCTCAAGAGATTTTGGATAGATATAGTAGATGCAACTCTACTATAGGGTATAGTGGTCGGAAAATTGCTCGGCGTGGCGGTTCAAAGAGTTCGAGTCATCGGAGAGTGAGTTCGGAAAGCTGTGATGTTTTTTCAGGCAAATGGGTGTTTGATAATGCTTCATATCCATTGTATAATGAATCAGATTGTCCTTATATGTCGGATCAATTGGCTTGTCACAAGCATGGAAGAAATGATTTGGGGTATCAGCATTGGAGATGGCAACCACATGATTGTGATTTGAAGAGGTGGAATGTAAAAGAAATGTGGGAAAAGTTGAGAGGAAAAAGGCTAATGTTTGTTGGAGATTCCCTTAATAGAGGGCAATGGATATCTATGGAGTACAATGCAACAGTTGAATTCCTCTGGGCTCCACTTCTTGTTGAATCTAATTCCGACGATCCGGTGAATCACAGACTGGATGAACGGATAATTCGTCCTGATTCAGTTCTGAAGCATGCAGCACTCTGGGAGCATGCTGATATACTTGTTTTCAATACATACTTGTGGTGGAGACAAGGCCCAGTTAAGCTATTATGGACTGATGAAGAAAATGGAGCTTGTGAAGAATTAGACGGACGAGGAGCTATGGAGTTGGCCATGGGAGCATGGGCCGATTGGGTTTCTTCTAAAGTCGATCCGCTCAAGAAACGTGTCTTTTTTGTAACCATGTCCCCGACACATCTCTGGAGCCGAGAGTGGAATCCAGAAAGTGAAGGAAATTGTTACGGCGAGAAGAAACCTATTGATGTCGAGAGCTATTGGGGAAGTGGTTCTGATTTGCCAACAATGAGCACTGTGGAGAACATCCTAAGCAGTTTAAATTCAAAAGTTTCTGTCCTCAATGTTACTCAACTTTCTGAGTATCGAAAAGATGGTCATCCTTCAATTTTTCGCAAATTTTGGGAGCCTCTTCGCCCTGAACAATTGTCAAATCCTCCGTCTTACTCTGATTGCATACATTGGTGCTTGCCAGGGGTACCTGATACGTGGAATGAGTTACTATTCCATTTTTTATGA
Protein sequence

>Msa0666990

MQKMKWNKKKVPIFPFILLLLLVFIAFSTLHNGSTIHKFHENPLHIHQEQASSTTYVKPNLPNHVKKSQEILDRYSRCNSTIGYSGRKIARRGGSKSSSHRRVSSESCDVFSGKWVFDNASYPLYNESDCPYMSDQLACHKHGRNDLGYQHWRWQPHDCDLKRWNVKEMWEKLRGKRLMFVGDSLNRGQWISMEYNATVEFLWAPLLVESNSDDPVNHRLDERIIRPDSVLKHAALWEHADILVFNTYLWWRQGPVKLLWTDEENGACEELDGRGAMELAMGAWADWVSSKVDPLKKRVFFVTMSPTHLWSREWNPESEGNCYGEKKPIDVESYWGSGSDLPTMSTVENILSSLNSKVSVLNVTQLSEYRKDGHPSIFRKFWEPLRPEQLSNPPSYSDCIHWCLPGVPDTWNELLFHFL*