AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0532190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532190 MtrunA17_Chr4g0005481 91.928 446 9 1 1 419 1 446 0.0 843
Msa0532190 MtrunA17_Chr4g0005491 51.240 363 140 4 94 419 45 407 1.32e-131 384
Msa0532190 MtrunA17_Chr7g0243301 50.543 368 145 4 86 419 45 409 2.47e-129 379
Msa0532190 MtrunA17_Chr5g0437601 49.271 343 144 3 104 416 79 421 5.81e-116 345
Msa0532190 MtrunA17_Chr3g0114101 50.737 339 137 3 108 416 89 427 9.11e-116 345
Msa0532190 MtrunA17_Chr8g0360521 46.491 342 154 3 106 419 69 409 3.72e-110 330
Msa0532190 MtrunA17_Chr4g0006991 44.767 344 160 3 106 419 84 427 3.98e-102 310
Msa0532190 MtrunA17_Chr3g0113671 44.315 343 159 5 106 416 104 446 7.63e-99 302
Msa0532190 MtrunA17_Chr7g0242701 44.058 345 163 3 105 419 83 427 1.27e-96 296
Msa0532190 MtrunA17_Chr5g0437291 41.908 346 166 5 106 416 163 508 2.93e-93 290
Msa0532190 MtrunA17_Chr4g0068111 35.054 368 185 10 92 419 100 453 4.41e-69 226
Msa0532190 MtrunA17_Chr2g0314801 36.416 346 169 9 104 419 29 353 6.76e-68 219
Msa0532190 MtrunA17_Chr3g0105301 35.260 346 180 7 107 419 42 376 5.44e-67 218
Msa0532190 MtrunA17_Chr1g0175671 33.167 401 221 8 55 416 114 506 4.66e-66 219
Msa0532190 MtrunA17_Chr7g0258851 34.973 366 192 8 89 416 227 584 4.12e-65 219
Msa0532190 MtrunA17_Chr3g0085081 36.207 348 168 11 99 416 22 345 1.72e-64 210
Msa0532190 MtrunA17_Chr5g0430371 35.143 350 177 7 107 416 57 396 1.20e-63 209
Msa0532190 MtrunA17_Chr3g0091031 35.920 348 169 11 99 416 22 345 1.73e-63 207
Msa0532190 MtrunA17_Chr8g0368461 33.426 359 182 7 106 416 176 525 6.36e-62 209
Msa0532190 MtrunA17_Chr3g0097891 33.918 342 176 7 104 416 27 347 7.32e-62 203
Msa0532190 MtrunA17_Chr7g0269991 35.694 353 164 8 108 419 137 467 1.16e-61 206
Msa0532190 MtrunA17_Chr1g0213281 33.524 349 189 7 107 419 174 515 1.18e-61 208
Msa0532190 MtrunA17_Chr4g0071391 34.085 355 178 9 106 419 107 446 8.84e-61 204
Msa0532190 MtrunA17_Chr1g0210771 33.333 348 186 8 101 419 52 382 1.15e-60 201
Msa0532190 MtrunA17_Chr3g0085071 34.006 347 177 9 99 416 37 360 4.70e-60 199
Msa0532190 MtrunA17_Chr5g0413271 34.203 345 185 9 106 419 143 476 9.03e-60 202
Msa0532190 MtrunA17_Chr1g0171171 33.429 347 184 9 102 419 47 375 4.18e-59 197
Msa0532190 MtrunA17_Chr5g0413851 34.006 347 187 10 94 416 28 356 9.65e-59 196
Msa0532190 MtrunA17_Chr4g0045951 33.239 355 185 9 90 415 27 358 6.11e-58 194
Msa0532190 MtrunA17_Chr4g0041011 34.226 336 180 9 107 419 46 363 9.58e-58 193
Msa0532190 MtrunA17_Chr2g0283581 33.046 348 180 9 101 419 35 358 3.71e-57 191
Msa0532190 MtrunA17_Chr4g0045941 33.724 341 172 9 105 415 30 346 6.58e-57 191
Msa0532190 MtrunA17_Chr2g0325481 33.819 343 174 10 102 415 44 362 2.71e-55 187
Msa0532190 MtrunA17_Chr7g0259711 33.894 357 182 12 105 419 88 432 7.33e-55 188
Msa0532190 MtrunA17_Chr2g0287901 31.701 388 207 10 75 416 59 434 9.75e-55 187
Msa0532190 MtrunA17_Chr2g0314791 32.378 349 171 10 106 419 27 345 1.70e-52 179
Msa0532190 MtrunA17_Chr3g0126021 30.362 359 185 9 103 419 124 459 4.23e-52 181
Msa0532190 MtrunA17_Chr8g0384151 30.028 353 174 9 108 416 90 413 3.30e-47 167
Msa0532190 MtrunA17_Chr1g0178081 31.215 362 140 10 97 416 44 338 3.88e-43 154
Msa0532190 MtrunA17_Chr6g0456681 28.962 366 201 12 100 419 56 408 3.57e-40 148
Msa0532190 MtrunA17_Chr4g0070341 28.532 361 186 13 106 416 130 468 8.13e-34 131
Msa0532190 MtrunA17_Chr6g0476041 26.446 363 205 13 106 419 165 514 1.04e-31 126
Msa0532190 MtrunA17_Chr1g0209921 32.174 230 130 5 103 308 39 266 2.04e-31 120
Msa0532190 MtrunA17_Chr1g0188191 26.050 357 210 12 108 419 234 581 2.65e-31 125
Msa0532190 MtrunA17_Chr8g0347321 26.039 361 208 12 105 419 92 439 4.45e-31 123
Msa0532190 MtrunA17_Chr8g0384421 27.733 375 189 16 96 415 121 468 8.18e-31 123
Msa0532190 MtrunA17_Chr5g0414041 27.446 368 196 14 105 419 84 433 1.34e-28 116
Msa0532190 MtrunA17_Chr6g0456691 27.500 360 205 11 103 419 73 419 1.42e-28 116
Msa0532190 MtrunA17_Chr2g0283851 25.464 377 195 14 103 419 50 400 3.74e-28 114
Msa0532190 MtrunA17_Chr5g0414051 27.419 372 196 16 102 419 69 420 3.68e-27 112
Msa0532190 MtrunA17_Chr5g0414091 27.559 381 199 17 93 419 74 431 6.93e-27 111
Msa0532190 MtrunA17_Chr7g0226991 26.997 363 201 14 106 419 55 402 1.98e-26 110
Msa0532190 MtrunA17_Chr4g0049421 26.816 358 195 16 108 415 48 388 3.17e-26 109
Msa0532190 MtrunA17_Chr5g0414061 27.249 378 190 17 101 419 87 438 4.44e-25 106
Msa0532190 MtrunA17_Chr6g0455901 25.676 370 197 15 106 419 69 416 1.30e-23 102
Msa0532190 MtrunA17_Chr3g0140371 25.956 366 206 13 102 419 12 360 1.55e-23 101
Msa0532190 MtrunA17_Chr6g0451321 23.747 459 257 17 16 419 37 457 4.08e-23 101
Msa0532190 MtrunA17_Chr8g0391481 24.800 375 216 13 95 419 14 372 1.41e-22 98.6
Msa0532190 MtrunA17_Chr8g0387921 23.611 360 213 12 108 419 74 419 7.64e-21 94.0
Msa0532190 MtrunA17_Chr3g0085101 38.596 114 62 2 271 381 1 109 6.12e-18 79.3
Msa0532190 MtrunA17_Chr7g0221291 38.384 99 60 1 95 193 66 163 8.06e-18 80.5
Msa0532190 MtrunA17_Chr7g0221271 38.384 99 60 1 95 193 66 163 1.25e-16 78.2
Msa0532190 MtrunA17_Chr1g0209931 37.624 101 47 2 319 419 8 92 4.24e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532190 AT5G01620.2 62.723 448 132 7 5 419 4 449 0.0 566
Msa0532190 AT5G01620.1 62.723 448 132 7 5 419 4 449 0.0 566
Msa0532190 AT5G01620.3 61.978 455 132 7 5 419 4 457 0.0 565
Msa0532190 AT2G38320.1 48.493 365 146 4 89 419 48 404 1.52e-123 364
Msa0532190 AT1G73140.1 45.906 342 156 3 106 419 65 405 2.24e-111 333
Msa0532190 AT2G40320.1 46.647 343 153 3 104 416 77 419 1.77e-109 329
Msa0532190 AT3G11030.1 47.384 344 150 4 104 416 102 445 1.47e-107 325
Msa0532190 AT2G38320.2 48.598 321 131 3 133 419 1 321 4.86e-107 319
Msa0532190 AT5G01360.2 44.928 345 159 4 106 419 34 378 1.64e-101 307
Msa0532190 AT3G55990.1 43.923 362 171 5 87 416 119 480 1.79e-101 310
Msa0532190 AT5G01360.1 44.928 345 159 4 106 419 90 434 4.92e-101 308
Msa0532190 AT2G40150.1 44.290 359 160 8 97 416 60 417 2.33e-98 300
Msa0532190 AT2G40160.2 40.510 353 173 8 103 419 72 423 1.75e-85 268
Msa0532190 AT2G40160.1 40.401 349 171 8 103 415 72 419 8.49e-85 266
Msa0532190 AT3G62390.1 36.639 363 177 10 94 419 126 472 1.39e-68 225
Msa0532190 AT5G49340.1 36.544 353 174 10 107 419 99 441 2.50e-68 224
Msa0532190 AT3G12060.1 34.568 405 215 9 54 416 136 532 1.89e-66 221
Msa0532190 AT1G60790.1 35.519 366 189 9 90 416 172 529 1.63e-65 219
Msa0532190 AT5G58600.1 34.582 347 184 7 106 419 64 400 4.12e-64 211
Msa0532190 AT2G34070.1 33.518 361 187 8 89 419 46 383 4.21e-64 211
Msa0532190 AT1G78710.1 33.043 345 180 8 104 419 34 356 1.42e-63 208
Msa0532190 AT1G29050.1 33.515 367 187 9 85 419 37 378 1.17e-62 207
Msa0532190 AT3G14850.2 35.088 342 179 12 104 419 30 354 1.26e-62 206
Msa0532190 AT2G30900.1 34.302 344 173 10 108 419 43 365 1.57e-61 203
Msa0532190 AT5G06700.1 35.311 354 181 9 104 419 251 594 1.79e-61 209
Msa0532190 AT3G54260.1 36.471 340 164 11 108 415 51 370 1.99e-61 204
Msa0532190 AT5G20590.1 35.311 354 174 8 107 419 140 479 1.40e-60 204
Msa0532190 AT2G40160.3 41.909 241 105 6 103 309 72 311 3.97e-58 193
Msa0532190 AT2G30010.1 33.609 363 178 11 103 419 51 396 6.53e-58 195
Msa0532190 AT3G06080.2 33.613 357 186 8 104 419 99 445 6.55e-58 197
Msa0532190 AT2G30010.2 33.609 363 178 11 103 419 94 439 9.04e-58 196
Msa0532190 AT5G19160.1 33.880 366 170 9 104 416 95 441 6.38e-56 191
Msa0532190 AT2G31110.2 33.429 347 177 9 103 419 40 362 2.14e-55 187
Msa0532190 AT2G42570.1 32.759 348 182 9 101 419 40 364 6.51e-54 184
Msa0532190 AT5G06230.2 33.243 370 195 7 92 419 5 364 1.53e-53 182
Msa0532190 AT5G06230.1 33.243 367 193 7 92 416 46 402 2.91e-53 183
Msa0532190 AT1G48880.1 32.275 378 181 12 86 419 93 439 7.17e-52 180
Msa0532190 AT3G11570.1 32.727 330 173 9 125 416 98 416 1.25e-45 163
Msa0532190 AT3G62390.2 35.039 254 124 5 94 311 126 374 9.55e-44 158
Msa0532190 AT1G78710.2 29.721 323 167 10 104 419 27 296 2.67e-41 148
Msa0532190 AT1G70230.1 29.944 354 185 13 108 419 79 411 8.15e-38 142
Msa0532190 AT5G19160.2 34.538 249 112 4 104 309 95 335 5.91e-37 138
Msa0532190 AT5G20590.2 33.745 243 116 4 107 309 140 377 2.63e-36 137
Msa0532190 AT5G58600.2 33.047 233 119 5 106 308 64 289 3.22e-36 134
Msa0532190 AT2G34070.2 31.365 271 134 7 179 419 1 249 4.89e-36 133
Msa0532190 AT3G06080.1 33.745 243 122 5 104 309 99 339 6.49e-36 135
Msa0532190 AT2G30900.2 33.333 225 111 6 108 301 43 259 7.56e-35 130
Msa0532190 AT5G64020.1 29.282 362 190 17 108 416 57 405 1.81e-34 132
Msa0532190 AT5G20680.6 28.647 377 193 16 95 419 105 457 2.41e-34 133
Msa0532190 AT5G20680.4 28.647 377 193 16 95 419 199 551 3.92e-34 134
Msa0532190 AT5G20680.1 28.647 377 193 16 95 419 199 551 3.92e-34 134
Msa0532190 AT5G20680.3 28.647 377 193 16 95 419 199 551 3.92e-34 134
Msa0532190 AT5G20680.5 28.647 377 193 16 95 419 199 551 3.92e-34 134
Msa0532190 AT5G20680.2 28.647 377 193 16 95 419 181 533 4.45e-34 133
Msa0532190 AT3G14850.1 32.210 267 139 11 179 419 1 251 6.05e-34 127
Msa0532190 AT1G01430.1 28.177 362 203 11 105 419 96 447 1.53e-32 128
Msa0532190 AT4G25360.1 26.099 364 203 13 108 419 175 524 8.41e-32 127
Msa0532190 AT4G25360.2 26.099 364 203 13 108 419 175 524 8.41e-32 127
Msa0532190 AT5G06230.3 31.008 258 137 4 92 308 46 303 8.45e-32 123
Msa0532190 AT5G15890.1 26.027 365 214 11 95 419 174 522 1.11e-31 126
Msa0532190 AT5G64470.3 28.333 360 200 14 103 419 50 394 1.29e-31 124
Msa0532190 AT2G37720.1 27.123 365 192 15 103 416 138 479 3.52e-31 124
Msa0532190 AT5G51640.1 24.725 364 209 12 108 419 138 488 1.04e-30 124
Msa0532190 AT2G31110.1 33.624 229 126 7 194 419 9 214 5.51e-30 115
Msa0532190 AT3G02440.2 26.593 361 197 11 108 419 135 476 1.10e-29 120
Msa0532190 AT3G02440.1 26.593 361 197 11 108 419 127 468 1.22e-29 120
Msa0532190 AT2G31110.3 29.386 228 124 5 103 301 40 259 1.35e-28 113
Msa0532190 AT4G23790.1 26.316 361 209 13 103 416 74 424 8.20e-28 114
Msa0532190 AT5G64470.2 27.869 366 200 16 103 419 50 400 1.37e-27 113
Msa0532190 AT4G01080.1 25.543 368 202 10 98 415 81 426 4.78e-26 109
Msa0532190 AT2G14530.1 24.863 366 206 12 105 419 59 406 4.98e-25 106
Msa0532190 AT3G28150.1 27.701 361 192 17 108 419 70 410 1.70e-24 105
Msa0532190 AT5G15900.1 25.691 362 210 11 103 419 62 409 3.24e-22 98.6
Msa0532190 AT5G15900.2 25.691 362 210 11 103 419 81 428 3.75e-22 98.6
Msa0532190 AT4G11090.1 22.652 362 225 10 103 419 74 425 9.31e-21 94.4
Msa0532190 AT5G64470.4 26.545 275 152 12 103 335 50 316 2.92e-15 76.6
Msa0532190 AT5G64470.1 26.692 266 146 11 103 326 50 308 7.03e-15 75.5

Find 118 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACAATTTCCTTCACTTTC+TGG 0.072922 4_1:+6211390 None:intergenic
TTCTGCATAGTTTGCGTTAA+AGG 0.107358 4_1:+6216978 None:intergenic
ATATCCATTGCCCTCTATTA+AGG 0.217470 4_1:+6215064 None:intergenic
AGAGAATCTGCTGAAAATTA+AGG 0.233432 4_1:-6210958 Msa0532190:three_prime_UTR
TGAGATTTCTTGAGGTGATT+AGG 0.251767 4_1:+6216780 None:intergenic
GATACGGACAATAGCTTAAC+TGG 0.280812 4_1:+6214370 None:intergenic
CACTTTCTGGATTCCACTCT+CGG 0.305752 4_1:+6211403 None:intergenic
AATAACAGAAGAAGGATAAA+AGG 0.306836 4_1:+6216921 None:intergenic
CAAGCATGGAAGAAATGATT+TGG 0.310510 4_1:-6216280 Msa0532190:CDS
GAGATTTCTTGAGGTGATTA+GGG 0.318424 4_1:+6216781 None:intergenic
GGAGGATTTGACAATTGTTC+AGG 0.333796 4_1:+6211177 None:intergenic
CTATTGATGTCGAGAGCTAT+TGG 0.340298 4_1:-6211353 Msa0532190:CDS
CTGCTCTGTTGTTTGATACA+AGG 0.342054 4_1:-6210985 Msa0532190:three_prime_UTR
TCCTTATATGTCGGATCAAT+TGG 0.345640 4_1:-6216310 Msa0532190:CDS
AGTAGATGCAACTCTACTAT+AGG 0.345709 4_1:-6216474 Msa0532190:CDS
CATGGGAGCATGGGCCGATT+GGG 0.354248 4_1:-6214213 Msa0532190:CDS
TTGAGGTGATTAGGGAGATT+AGG 0.364610 4_1:+6216789 None:intergenic
CCATGGGAGCATGGGCCGAT+TGG 0.367066 4_1:-6214214 Msa0532190:CDS
AGTAACTCATTCCACGTATC+AGG 0.367182 4_1:+6211114 None:intergenic
GCCAATTGATCCGACATATA+AGG 0.368564 4_1:+6216309 None:intergenic
GAGGATTTGAATTCTAGTTC+TGG 0.371118 4_1:-6210664 Msa0532190:three_prime_UTR
TGCATACATTGGTGCTTGCC+AGG 0.380507 4_1:-6211141 Msa0532190:CDS
CAATAGCTCTCGACATCAAT+AGG 0.386275 4_1:+6211354 None:intergenic
AAGCATGGAAGAAATGATTT+GGG 0.393933 4_1:-6216279 Msa0532190:CDS
ATAACCGCGACCTTTGCATT+TGG 0.394493 4_1:-6211024 Msa0532190:three_prime_UTR
AGATGGACTGATGAAGAAAA+TGG 0.397042 4_1:-6214278 Msa0532190:CDS
TATTGATGTCGAGAGCTATT+GGG 0.397310 4_1:-6211352 Msa0532190:CDS
TGGAGTTGGCCATGGGAGCA+TGG 0.406053 4_1:-6214223 Msa0532190:CDS
ATGCAACAGTTGAATTCCTC+TGG 0.407598 4_1:-6214546 Msa0532190:CDS
CTTGGAAAATTGAAGTTTGA+AGG 0.410127 4_1:+6217059 None:intergenic
GCATGCTTCAGAACTGAATC+AGG 0.412599 4_1:+6214454 None:intergenic
TTCTCCACAGTGCTCATTGT+TGG 0.415633 4_1:+6211312 None:intergenic
TATCCATTGCCCTCTATTAA+GGG 0.415981 4_1:+6215065 None:intergenic
GTAGATGCAACTCTACTATA+GGG 0.432432 4_1:-6216473 Msa0532190:CDS
GGGAAAAGTTGAGAGGAAAA+AGG 0.433642 4_1:-6215107 Msa0532190:CDS
TAGAGGGCAATGGATATCTA+TGG 0.439218 4_1:-6215058 Msa0532190:intron
AGTTTGCGTTAAAGGATTGT+TGG 0.442813 4_1:+6216986 None:intergenic
GAGAATCTGCTGAAAATTAA+GGG 0.449657 4_1:-6210957 Msa0532190:three_prime_UTR
GTTTGCGTTAAAGGATTGTT+GGG 0.452025 4_1:+6216987 None:intergenic
TTCTGAAGCATGCAGCACTC+TGG 0.456327 4_1:-6214444 Msa0532190:CDS
CCATGTCCCCGACACATCTC+TGG 0.466181 4_1:-6214145 Msa0532190:intron
TGCTCTGTTGTTTGATACAA+GGG 0.469627 4_1:-6210984 Msa0532190:three_prime_UTR
AAACTATGCAGAAGATGAAA+TGG 0.472528 4_1:-6216968 Msa0532190:exon
GTTGGAGATTCCCTTAATAG+AGG 0.481483 4_1:-6215075 Msa0532190:CDS
GAGTCATCGGAGAGTGAGTT+CGG 0.484001 4_1:-6216406 Msa0532190:CDS
TGAATCTAATTCCGACGATC+CGG 0.487053 4_1:-6214509 Msa0532190:CDS
ATGATTTGGGGTATCAGCAT+TGG 0.488182 4_1:-6216266 Msa0532190:CDS
GAGGATTTGACAATTGTTCA+GGG 0.493800 4_1:+6211178 None:intergenic
GGTGTTGCTTCACAAAATCA+AGG 0.494129 4_1:-6210751 Msa0532190:three_prime_UTR
TCTGAAGCATGCAGCACTCT+GGG 0.494219 4_1:-6214443 Msa0532190:CDS
CTTTCTGAGTATCGAAAAGA+TGG 0.495771 4_1:-6211240 Msa0532190:CDS
AGGAGCTATGGAGTTGGCCA+TGG 0.503017 4_1:-6214231 Msa0532190:CDS
CCAGAGATGTGTCGGGGACA+TGG 0.503335 4_1:+6214145 None:intergenic
GAAAGTGAAGGAAATTGTTA+CGG 0.506616 4_1:-6211387 Msa0532190:CDS
GTCGAGAGCTATTGGGGAAG+TGG 0.506665 4_1:-6211345 Msa0532190:CDS
CCAATCGGCCCATGCTCCCA+TGG 0.507949 4_1:+6214214 None:intergenic
GGAGTTGGCCATGGGAGCAT+GGG 0.509010 4_1:-6214222 Msa0532190:CDS
CTTCTAACACCTAAAGCTAA+AGG 0.509551 4_1:+6210795 None:intergenic
GTGGAATGTAAAAGAAATGT+GGG 0.510084 4_1:-6215127 Msa0532190:CDS
TGAAAACTAATAACAGAAGA+AGG 0.514303 4_1:+6216913 None:intergenic
ATTAGACGGACGAGGAGCTA+TGG 0.520515 4_1:-6214243 Msa0532190:CDS
GCATACATTGGTGCTTGCCA+GGG 0.521197 4_1:-6211140 Msa0532190:CDS
GTTCTTGATGAATGTGAAGT+GGG 0.526213 4_1:+6216838 None:intergenic
TTTGACGAGAAACTTTGACT+TGG 0.533803 4_1:+6217041 None:intergenic
ATTCTCACCAGAGATGTGTC+GGG 0.535627 4_1:+6214138 None:intergenic
TTGGAGATTCCCTTAATAGA+GGG 0.535850 4_1:-6215074 Msa0532190:CDS
GGTGGAATGTAAAAGAAATG+TGG 0.540050 4_1:-6215128 Msa0532190:CDS
TCTGTGATTCACCGGATCGT+CGG 0.542409 4_1:+6214498 None:intergenic
TTGCTGCTTTCCAAATGCAA+AGG 0.547200 4_1:+6211014 None:intergenic
CTACTATAGGGTATAGTGGT+CGG 0.547743 4_1:-6216461 Msa0532190:CDS
TGGGGTATCAGCATTGGAGA+TGG 0.556269 4_1:-6216260 Msa0532190:CDS
CGGAAAATTGCTCGGCGTGG+CGG 0.557631 4_1:-6216441 Msa0532190:CDS
GTTCAAAGAGTTCGAGTCAT+CGG 0.557686 4_1:-6216419 Msa0532190:CDS
GACTTTAGAAGAAACCCAAT+CGG 0.560004 4_1:+6214199 None:intergenic
TCATCCAGTCTGTGATTCAC+CGG 0.562469 4_1:+6214490 None:intergenic
GATTCTCACCAGAGATGTGT+CGG 0.562623 4_1:+6214137 None:intergenic
GCATACCTTGAGATTTCTTG+AGG 0.564734 4_1:+6216772 None:intergenic
CTTTCCAAATGCAAAGGTCG+CGG 0.568257 4_1:+6211020 None:intergenic
TGCAACAGTTGAATTCCTCT+GGG 0.571258 4_1:-6214545 Msa0532190:CDS
GAATTAGATTCAACAAGAAG+TGG 0.574191 4_1:+6214520 None:intergenic
CTTACTCTGATTGCATACAT+TGG 0.576457 4_1:-6211152 Msa0532190:CDS
AACTCTACTATAGGGTATAG+TGG 0.583574 4_1:-6216465 Msa0532190:CDS
CACATGATTGTGATTTGAAG+AGG 0.587478 4_1:-6216233 Msa0532190:intron
ATTGATGTCGAGAGCTATTG+GGG 0.587738 4_1:-6211351 Msa0532190:CDS
AATCACCTCAAGAAATCTCA+AGG 0.591983 4_1:-6216777 Msa0532190:intron
GGAGCTATGGAGTTGGCCAT+GGG 0.596704 4_1:-6214230 Msa0532190:CDS
TTCCACGTATCAGGTACCCC+TGG 0.597532 4_1:+6211123 None:intergenic
ACATACTTGTGGTGGAGACA+AGG 0.599078 4_1:-6214394 Msa0532190:CDS
CAATTGGCTTGTCACAAGCA+TGG 0.600797 4_1:-6216294 Msa0532190:CDS
CAGAAAGTTGAGTAACATTG+AGG 0.601479 4_1:+6211256 None:intergenic
ATCAGATTGTCCTTATATGT+CGG 0.601694 4_1:-6216319 Msa0532190:CDS
GACAATTGTTCAGGGCGAAG+AGG 0.611639 4_1:+6211186 None:intergenic
CATACATTGGTGCTTGCCAG+GGG 0.614156 4_1:-6211139 Msa0532190:CDS
CAATCTGATTCATTATACAA+TGG 0.620866 4_1:+6216333 None:intergenic
TGTTCTTGATGAATGTGAAG+TGG 0.621328 4_1:+6216837 None:intergenic
ATTCCCTTAATAGAGGGCAA+TGG 0.622746 4_1:-6215068 Msa0532190:CDS
CGGACGAGGAGCTATGGAGT+TGG 0.622820 4_1:-6214237 Msa0532190:CDS
GAGTGGAATCCAGAAAGTGA+AGG 0.631701 4_1:-6211399 Msa0532190:CDS
TCTCATTTAGGAGCCGAGAG+TGG 0.641391 4_1:-6211416 Msa0532190:intron
CGATCCGGTGAATCACAGAC+TGG 0.645035 4_1:-6214494 Msa0532190:CDS
GAAATGTGGGAAAAGTTGAG+AGG 0.646292 4_1:-6215114 Msa0532190:CDS
TGCCAGGGGTACCTGATACG+TGG 0.646330 4_1:-6211125 Msa0532190:CDS
ATAGTGGTCGGAAAATTGCT+CGG 0.646712 4_1:-6216449 Msa0532190:CDS
TGAATCACAGACTGGATGAA+CGG 0.648682 4_1:-6214486 Msa0532190:CDS
ATACGGACAATAGCTTAACT+GGG 0.649776 4_1:+6214371 None:intergenic
CTCTTCAAATCACAATCATG+TGG 0.651299 4_1:+6216234 None:intergenic
TGTGAAGAATTAGACGGACG+AGG 0.651919 4_1:-6214251 Msa0532190:CDS
GGTCGGAAAATTGCTCGGCG+TGG 0.655381 4_1:-6216444 Msa0532190:CDS
GAATTCAAATCCTCTACACA+TGG 0.658856 4_1:+6210673 None:intergenic
TTCTCACCAGAGATGTGTCG+GGG 0.662612 4_1:+6214139 None:intergenic
TGTGAATGGTACTACCATTG+TGG 0.664224 4_1:+6216874 None:intergenic
GGAGCTTGTGAAGAATTAGA+CGG 0.668392 4_1:-6214257 Msa0532190:CDS
AGCATGGAAGAAATGATTTG+GGG 0.671028 4_1:-6216278 Msa0532190:CDS
GCATTCTCAACTCTCCACAA+TGG 0.689519 4_1:-6216888 Msa0532190:CDS
TGTATGCAATCAGAGTAAGA+CGG 0.716666 4_1:+6211156 None:intergenic
CAACAAGAAGTGGAGCCCAG+AGG 0.732586 4_1:+6214530 None:intergenic
ATGCAATCAGAGTAAGACGG+AGG 0.738418 4_1:+6211159 None:intergenic
TTTGCCAACAATGAGCACTG+TGG 0.766465 4_1:-6211316 Msa0532190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTTTAGAGATTT+TGG - chr4_1:6211183-6211202 Msa0532190:CDS 10.0%
!! TCAACAAAAAATTATTATAT+AGG + chr4_1:6213977-6213996 None:intergenic 10.0%
!!! AAATTTTGTCAATTTTTTAA+GGG + chr4_1:6215559-6215578 None:intergenic 10.0%
!!! ACACAATTTTTATATTTTTT+GGG + chr4_1:6215617-6215636 None:intergenic 10.0%
!!! AACACAATTTTTATATTTTT+TGG + chr4_1:6215618-6215637 None:intergenic 10.0%
!! AAAATTAATTAATAAGAAAC+TGG + chr4_1:6215793-6215812 None:intergenic 10.0%
!! ACTTAAAAATGTAAACTTTA+TGG - chr4_1:6211079-6211098 Msa0532190:exon 15.0%
!! CTTAAAAATGTAAACTTTAT+GGG - chr4_1:6211080-6211099 Msa0532190:exon 15.0%
!! TATAAACACTTATATGATAA+AGG - chr4_1:6211764-6211783 Msa0532190:intron 15.0%
!! ATATAAATAAGATCATACAT+CGG - chr4_1:6212369-6212388 Msa0532190:intron 15.0%
!! TATAAGATGTAATATAAAGA+GGG + chr4_1:6214664-6214683 None:intergenic 15.0%
!! ATATAAGATGTAATATAAAG+AGG + chr4_1:6214665-6214684 None:intergenic 15.0%
!! TAAAAGTAAAAACTTTCTTT+GGG + chr4_1:6215402-6215421 None:intergenic 15.0%
!! ATAAAAGTAAAAACTTTCTT+TGG + chr4_1:6215403-6215422 None:intergenic 15.0%
!!! CAAATTTTGTCAATTTTTTA+AGG + chr4_1:6215560-6215579 None:intergenic 15.0%
!! TATTTGAACAAGATTAATTT+GGG + chr4_1:6215974-6215993 None:intergenic 15.0%
!! TTATTTGAACAAGATTAATT+TGG + chr4_1:6215975-6215994 None:intergenic 15.0%
!! ATTAATCTTGTTCAAATAAT+AGG - chr4_1:6215976-6215995 Msa0532190:intron 15.0%
!!! TGTATCAAAGATTTTAAATA+GGG + chr4_1:6216138-6216157 None:intergenic 15.0%
!!! CTATTTTGACTTATATACTT+TGG + chr4_1:6210676-6210695 None:intergenic 20.0%
!!! ATTTTTGTGTTTTGTTGAAA+TGG - chr4_1:6211031-6211050 Msa0532190:three_prime_UTR 20.0%
!!! TTTTTGTGTTTTGTTGAAAT+GGG - chr4_1:6211032-6211051 Msa0532190:three_prime_UTR 20.0%
!!! TTTGTAATTTGAGTTTGATT+TGG - chr4_1:6211109-6211128 Msa0532190:CDS 20.0%
!!! TTTTTTGTGATTTGTTGAAA+TGG - chr4_1:6211148-6211167 Msa0532190:CDS 20.0%
!!! TTTTTGTGATTTGTTGAAAT+GGG - chr4_1:6211149-6211168 Msa0532190:CDS 20.0%
!!! TAATTAAGTTATGGTTTTGT+CGG - chr4_1:6211520-6211539 Msa0532190:intron 20.0%
!! AATAATGTTGTTAACCAAAT+AGG - chr4_1:6211790-6211809 Msa0532190:intron 20.0%
!!! TAGAAATTGTTTTAGCATTT+AGG + chr4_1:6212131-6212150 None:intergenic 20.0%
!! TTGTTATAAACCTGTATATT+TGG + chr4_1:6212233-6212252 None:intergenic 20.0%
!! TATAAATAAGATCATACATC+GGG - chr4_1:6212370-6212389 Msa0532190:intron 20.0%
!! AATTGCTTGATATTATGAAA+CGG + chr4_1:6213838-6213857 None:intergenic 20.0%
!!! CTTATATGTTTGTTTTCATT+TGG - chr4_1:6214678-6214697 Msa0532190:intron 20.0%
!!! GATGTAAGTTAAGATTTTAA+GGG + chr4_1:6214946-6214965 None:intergenic 20.0%
!! TAACAAAACTTTAATTAGAG+AGG - chr4_1:6215063-6215082 Msa0532190:CDS 20.0%
!! AACAAAACTTTAATTAGAGA+GGG - chr4_1:6215064-6215083 Msa0532190:CDS 20.0%
!! ATAAAATTAGTGATGAAAAC+TGG + chr4_1:6215182-6215201 None:intergenic 20.0%
!! TATAAAATTAGACACTGAAA+TGG - chr4_1:6215447-6215466 Msa0532190:intron 20.0%
!!! CAATTTTTATATTTTTTGGG+AGG + chr4_1:6215614-6215633 None:intergenic 20.0%
!! AAACATGTTTAATAAGAAAC+TGG + chr4_1:6215938-6215957 None:intergenic 20.0%
!!! CTGTATCAAAGATTTTAAAT+AGG + chr4_1:6216139-6216158 None:intergenic 20.0%
!!! AATTAAACCTTTTCTCATTT+AGG - chr4_1:6216260-6216279 Msa0532190:CDS 20.0%
!!! TTCAATTTTTCGCAAATTTT+GGG - chr4_1:6216477-6216496 Msa0532190:CDS 20.0%
!! GCAATGAATTTCATAAAAAA+TGG + chr4_1:6216603-6216622 None:intergenic 20.0%
!!! AATTTAGTTTGATGTAGAAA+AGG - chr4_1:6216775-6216794 Msa0532190:intron 20.0%
!!! TTATTCAGTTTTTATGCTTT+TGG - chr4_1:6216849-6216868 Msa0532190:CDS 20.0%
! AGAAGGATAAAAGGAAAAAT+TGG + chr4_1:6210761-6210780 None:intergenic 25.0%
! AATAACAGAAGAAGGATAAA+AGG + chr4_1:6210770-6210789 None:intergenic 25.0%
! TGAAAACTAATAACAGAAGA+AGG + chr4_1:6210778-6210797 None:intergenic 25.0%
! GCTTAAAAATGTGAACTTTA+TGG - chr4_1:6210965-6210984 Msa0532190:three_prime_UTR 25.0%
!!! AAATGGGTTTGATTTGAAAA+TGG - chr4_1:6211048-6211067 Msa0532190:three_prime_UTR 25.0%
! CAATCTGATTCATTATACAA+TGG + chr4_1:6211358-6211377 None:intergenic 25.0%
! TTGTGAGCATAATTAAGTTA+TGG - chr4_1:6211511-6211530 Msa0532190:intron 25.0%
! AGAACAAATGTTATACTACT+TGG + chr4_1:6211916-6211935 None:intergenic 25.0%
!! GTTGAAATTCTTATGCTTTT+TGG - chr4_1:6211966-6211985 Msa0532190:intron 25.0%
! CTTTGTAATAACAAAGACAA+AGG - chr4_1:6212152-6212171 Msa0532190:intron 25.0%
! TCATACATAATAGGATCATT+TGG + chr4_1:6212336-6212355 None:intergenic 25.0%
!!! CAAAGTATGTTATTTTTGTG+AGG - chr4_1:6212502-6212521 Msa0532190:intron 25.0%
!! ATCTATTTCTTGTCTAAAAC+AGG - chr4_1:6212539-6212558 Msa0532190:intron 25.0%
!!! TTGATTTTGATATGTTTGAG+TGG - chr4_1:6212802-6212821 Msa0532190:intron 25.0%
! ATTGTGAAGTGATTTATGTA+TGG + chr4_1:6212922-6212941 None:intergenic 25.0%
!! TATTCTTATGCCAATTTTTC+AGG - chr4_1:6213113-6213132 Msa0532190:intron 25.0%
!! TTGTTTTCAATACATACTTG+TGG - chr4_1:6213283-6213302 Msa0532190:intron 25.0%
! TAATCATACAGAATCAAGAT+TGG + chr4_1:6213576-6213595 None:intergenic 25.0%
! ATTCTGTATGATTATCTGTT+AGG - chr4_1:6213582-6213601 Msa0532190:intron 25.0%
! AAATTCAAGCTAAAGTTTCA+CGG + chr4_1:6213639-6213658 None:intergenic 25.0%
! TGTCAGTTTAATAAAGAACT+AGG + chr4_1:6213672-6213691 None:intergenic 25.0%
! AGTTCTTTATTAAACTGACA+TGG - chr4_1:6213672-6213691 Msa0532190:intron 25.0%
! GTTACGAGAAAAATAATTCA+TGG - chr4_1:6213735-6213754 Msa0532190:intron 25.0%
! ACAATTCTGTCAAAATCTTA+TGG + chr4_1:6213809-6213828 None:intergenic 25.0%
!! AACTTGTCTTTTGTAACTTT+TGG - chr4_1:6213894-6213913 Msa0532190:intron 25.0%
! TTATGTTCTATGATACGTAT+TGG - chr4_1:6214024-6214043 Msa0532190:intron 25.0%
! TATGTTCTATGATACGTATT+GGG - chr4_1:6214025-6214044 Msa0532190:intron 25.0%
! CTCTAGTTATAAAAACACAA+TGG + chr4_1:6214728-6214747 None:intergenic 25.0%
! CACTGCAAAAATACTATTTA+TGG - chr4_1:6214776-6214795 Msa0532190:intron 25.0%
! TTCACATAGAAGAAATGAAA+TGG - chr4_1:6214906-6214925 Msa0532190:intron 25.0%
!!! AAGTTAAGATTTTAAGGGAA+GGG + chr4_1:6214941-6214960 None:intergenic 25.0%
!!! TAAGTTAAGATTTTAAGGGA+AGG + chr4_1:6214942-6214961 None:intergenic 25.0%
!! GGATGTAAGTTAAGATTTTA+AGG + chr4_1:6214947-6214966 None:intergenic 25.0%
!! AGTACAAATTTTCTTCATAG+TGG + chr4_1:6214968-6214987 None:intergenic 25.0%
! TACCTAGTTATGAATAACTT+GGG - chr4_1:6215228-6215247 Msa0532190:intron 25.0%
! TTATGAATAACTTGGGAAAA+AGG - chr4_1:6215235-6215254 Msa0532190:intron 25.0%
! TAAACCTATAATGATATGTG+CGG + chr4_1:6215334-6215353 None:intergenic 25.0%
! GAAACTGGAAAATCAAAAAT+AGG + chr4_1:6215778-6215797 None:intergenic 25.0%
! GCAAATGTTAGTAAGTTAAT+GGG - chr4_1:6215820-6215839 Msa0532190:intron 25.0%
! ACACGAGAAAATAACTAATA+AGG + chr4_1:6216183-6216202 None:intergenic 25.0%
! ATCACCTTGTATTATACAAA+GGG + chr4_1:6216225-6216244 None:intergenic 25.0%
!! CTTTTGAATTTAAACTGCTT+AGG + chr4_1:6216405-6216424 None:intergenic 25.0%
! CAAAATTTGCGAAAAATTGA+AGG + chr4_1:6216478-6216497 None:intergenic 25.0%
!! CTTCAATTTTTCGCAAATTT+TGG - chr4_1:6216476-6216495 Msa0532190:CDS 25.0%
AAACTATGCAGAAGATGAAA+TGG - chr4_1:6210720-6210739 Msa0532190:three_prime_UTR 30.0%
! GTTTTCATGGAATTTGTGAA+TGG + chr4_1:6210831-6210850 None:intergenic 30.0%
! TTTGTTGAAATGGGTTTGAT+TGG - chr4_1:6211041-6211060 Msa0532190:three_prime_UTR 30.0%
!!! TGATGTTTTTTCAGGCAAAT+GGG - chr4_1:6211312-6211331 Msa0532190:CDS 30.0%
ATCAGATTGTCCTTATATGT+CGG - chr4_1:6211369-6211388 Msa0532190:CDS 30.0%
AAGCATGGAAGAAATGATTT+GGG - chr4_1:6211409-6211428 Msa0532190:CDS 30.0%
TCAAACAAGTCAATCCAAAA+AGG + chr4_1:6211562-6211581 None:intergenic 30.0%
!!! TTTTTGGATTGACTTGTTTG+AGG - chr4_1:6211561-6211580 Msa0532190:intron 30.0%
AACTACATACAACTCAATCT+AGG + chr4_1:6211893-6211912 None:intergenic 30.0%
CATTTGTTCTATTGTTCAAG+TGG - chr4_1:6211926-6211945 Msa0532190:intron 30.0%
TTCTATTGTTCAAGTGGAAT+AGG - chr4_1:6211932-6211951 Msa0532190:intron 30.0%
TCTATTGTTCAAGTGGAATA+GGG - chr4_1:6211933-6211952 Msa0532190:intron 30.0%
! TCATTTTCTATTGACGCTTT+TGG + chr4_1:6211997-6212016 None:intergenic 30.0%
ATGCAGTAAAAGATGATAAG+TGG + chr4_1:6212057-6212076 None:intergenic 30.0%
ACTTAATCTATTCATGAGTG+CGG - chr4_1:6212182-6212201 Msa0532190:intron 30.0%
! TATTTGGCTTATCACAGTTT+AGG + chr4_1:6212217-6212236 None:intergenic 30.0%
ATATGTACTCTTGAATTGTC+AGG - chr4_1:6212304-6212323 Msa0532190:intron 30.0%
GTGAAGATGTCATACATAAT+AGG + chr4_1:6212345-6212364 None:intergenic 30.0%
! AAAAAAAAGAGCACAGTTGT+GGG + chr4_1:6212399-6212418 None:intergenic 30.0%
! AAAAAAAAAGAGCACAGTTG+TGG + chr4_1:6212400-6212419 None:intergenic 30.0%
! AAAGTTTTCAATCACCAAAC+AGG - chr4_1:6212461-6212480 Msa0532190:intron 30.0%
CAAAAAACATAAGACCTGTT+TGG + chr4_1:6212478-6212497 None:intergenic 30.0%
!!! CAAACAGGTCTTATGTTTTT+TGG - chr4_1:6212476-6212495 Msa0532190:intron 30.0%
! TATTTCTTGTCTAAAACAGG+TGG - chr4_1:6212542-6212561 Msa0532190:intron 30.0%
GTGGAATGTAAAAGAAATGT+GGG - chr4_1:6212561-6212580 Msa0532190:intron 30.0%
AAAATGGTAAGATGAGCATT+TGG + chr4_1:6212703-6212722 None:intergenic 30.0%
TACAGAAGTTTCAACTATAG+GGG + chr4_1:6212748-6212767 None:intergenic 30.0%
GTACAGAAGTTTCAACTATA+GGG + chr4_1:6212749-6212768 None:intergenic 30.0%
! AATTGATTCTAACTTGAAGC+TGG - chr4_1:6212853-6212872 Msa0532190:intron 30.0%
! ATTGATTCTAACTTGAAGCT+GGG - chr4_1:6212854-6212873 Msa0532190:intron 30.0%
TTAAGAAGAAATGTTGTGTG+TGG + chr4_1:6213024-6213043 None:intergenic 30.0%
GAATTAGATTCAACAAGAAG+TGG + chr4_1:6213171-6213190 None:intergenic 30.0%
! TTTTCAATACATACTTGTGG+TGG - chr4_1:6213286-6213305 Msa0532190:intron 30.0%
! TGTGTATTGATGAACTGATA+CGG + chr4_1:6213337-6213356 None:intergenic 30.0%
TTTGTCTACTCTATTCTGAT+AGG - chr4_1:6213365-6213384 Msa0532190:intron 30.0%
! GTGATTTGAACTTTTGTAGA+TGG - chr4_1:6213393-6213412 Msa0532190:intron 30.0%
! ACAAGTTTTGCTCAAAAACA+TGG + chr4_1:6213881-6213900 None:intergenic 30.0%
! TTTTGGCCAAATTGTGATTT+GGG - chr4_1:6213911-6213930 Msa0532190:intron 30.0%
ACAAACAAACTGCTTTGATT+TGG + chr4_1:6213948-6213967 None:intergenic 30.0%
! TTTTTGTTGAGATGCATTCT+TGG - chr4_1:6213987-6214006 Msa0532190:intron 30.0%
AACTGATGATAGAAACCTTA+GGG - chr4_1:6214061-6214080 Msa0532190:intron 30.0%
AAAGAGAAAAGAGTCAAACA+AGG - chr4_1:6214470-6214489 Msa0532190:CDS 30.0%
AAGAGTTAGTTACAGCAATA+AGG + chr4_1:6214496-6214515 None:intergenic 30.0%
AAAGTTAGTTACATGCGAAT+AGG + chr4_1:6214561-6214580 None:intergenic 30.0%
AGTGTCAATACATAGAATGA+GGG + chr4_1:6214760-6214779 None:intergenic 30.0%
!! AGTTAAGATTTTAAGGGAAG+GGG + chr4_1:6214940-6214959 None:intergenic 30.0%
! TTTCTAGTAGTGAATGTTTG+AGG - chr4_1:6215203-6215222 Msa0532190:intron 30.0%
TTCTAGTAGTGAATGTTTGA+GGG - chr4_1:6215204-6215223 Msa0532190:intron 30.0%
GTACCTAGTTATGAATAACT+TGG - chr4_1:6215227-6215246 Msa0532190:intron 30.0%
TTCCCAAGTTATTCATAACT+AGG + chr4_1:6215233-6215252 None:intergenic 30.0%
! AAAACTTTCTTTGGGAATGT+GGG + chr4_1:6215394-6215413 None:intergenic 30.0%
! AAAAACTTTCTTTGGGAATG+TGG + chr4_1:6215395-6215414 None:intergenic 30.0%
GGCAAATGTTAGTAAGTTAA+TGG - chr4_1:6215819-6215838 Msa0532190:intron 30.0%
!!! TGGGTATGTTAGTTTTTACA+TGG - chr4_1:6215839-6215858 Msa0532190:intron 30.0%
ATACTATAAAGAGCAGATGT+GGG + chr4_1:6216030-6216049 None:intergenic 30.0%
CTTTATAGTATCCGAACATT+AGG - chr4_1:6216039-6216058 Msa0532190:intron 30.0%
! TGTTGATTATTGTAGTGACT+AGG - chr4_1:6216104-6216123 Msa0532190:intron 30.0%
TCACCTTGTATTATACAAAG+GGG + chr4_1:6216224-6216243 None:intergenic 30.0%
GATCACCTTGTATTATACAA+AGG + chr4_1:6216226-6216245 None:intergenic 30.0%
TAACAATTTCCTTCACTTTC+TGG + chr4_1:6216301-6216320 None:intergenic 30.0%
GAAAGTGAAGGAAATTGTTA+CGG - chr4_1:6216301-6216320 Msa0532190:CDS 30.0%
AGAGAATCTGCTGAAAATTA+AGG - chr4_1:6216730-6216749 Msa0532190:intron 30.0%
GAGAATCTGCTGAAAATTAA+GGG - chr4_1:6216731-6216750 Msa0532190:intron 30.0%
!!! AAGTGTTTTCCTTTAGCTTT+AGG - chr4_1:6216884-6216903 Msa0532190:CDS 30.0%
!! TAGGTGTTAGAAGTTTTGAT+TGG - chr4_1:6216903-6216922 Msa0532190:CDS 30.0%
!! TTTTGATTGGAATGCTTGTA+TGG - chr4_1:6216916-6216935 Msa0532190:CDS 30.0%
!!! TTTTGTGTGGATTAGTATCT+TGG - chr4_1:6216983-6217002 Msa0532190:exon 30.0%
TTTGACGAGAAACTTTGACT+TGG + chr4_1:6210650-6210669 None:intergenic 35.0%
GTTTGCGTTAAAGGATTGTT+GGG + chr4_1:6210704-6210723 None:intergenic 35.0%
AGTTTGCGTTAAAGGATTGT+TGG + chr4_1:6210705-6210724 None:intergenic 35.0%
! TTCTGCATAGTTTGCGTTAA+AGG + chr4_1:6210713-6210732 None:intergenic 35.0%
GTTCTTGATGAATGTGAAGT+GGG + chr4_1:6210853-6210872 None:intergenic 35.0%
TGTTCTTGATGAATGTGAAG+TGG + chr4_1:6210854-6210873 None:intergenic 35.0%
GAGATTTCTTGAGGTGATTA+GGG + chr4_1:6210910-6210929 None:intergenic 35.0%
TGAGATTTCTTGAGGTGATT+AGG + chr4_1:6210911-6210930 None:intergenic 35.0%
AATCACCTCAAGAAATCTCA+AGG - chr4_1:6210911-6210930 Msa0532190:intron 35.0%
AGTAGATGCAACTCTACTAT+AGG - chr4_1:6211214-6211233 Msa0532190:CDS 35.0%
GTAGATGCAACTCTACTATA+GGG - chr4_1:6211215-6211234 Msa0532190:CDS 35.0%
AACTCTACTATAGGGTATAG+TGG - chr4_1:6211223-6211242 Msa0532190:CDS 35.0%
!!! GAAAGCTGTGATGTTTTTTC+AGG - chr4_1:6211304-6211323 Msa0532190:CDS 35.0%
!!! GTGATGTTTTTTCAGGCAAA+TGG - chr4_1:6211311-6211330 Msa0532190:CDS 35.0%
TCCTTATATGTCGGATCAAT+TGG - chr4_1:6211378-6211397 Msa0532190:CDS 35.0%
CAAGCATGGAAGAAATGATT+TGG - chr4_1:6211408-6211427 Msa0532190:CDS 35.0%
AGCATGGAAGAAATGATTTG+GGG - chr4_1:6211410-6211429 Msa0532190:intron 35.0%
CTCTTCAAATCACAATCATG+TGG + chr4_1:6211457-6211476 None:intergenic 35.0%
CACATGATTGTGATTTGAAG+AGG - chr4_1:6211455-6211474 Msa0532190:intron 35.0%
!!! TTAAGTTATGGTTTTGTCGG+TGG - chr4_1:6211523-6211542 Msa0532190:intron 35.0%
! GAAAACAGCTTATGACTTGT+CGG - chr4_1:6211630-6211649 Msa0532190:intron 35.0%
GATAAGCTATAGAGAGCTTA+TGG + chr4_1:6211676-6211695 None:intergenic 35.0%
! TGACCTAGTTGACAGTTTTA+AGG - chr4_1:6211829-6211848 Msa0532190:intron 35.0%
! TAGCCTTAAAACTGTCAACT+AGG + chr4_1:6211835-6211854 None:intergenic 35.0%
CTGTGATAAGCCAAATATAC+AGG - chr4_1:6212220-6212239 Msa0532190:intron 35.0%
AATGTGAGACTATCGAATTC+TGG - chr4_1:6212272-6212291 Msa0532190:intron 35.0%
! AAAAAAAGAGCACAGTTGTG+GGG + chr4_1:6212398-6212417 None:intergenic 35.0%
GGTGGAATGTAAAAGAAATG+TGG - chr4_1:6212560-6212579 Msa0532190:intron 35.0%
GGAAAAAGGCTAATGTTTGT+TGG - chr4_1:6212595-6212614 Msa0532190:intron 35.0%
TTGGAGATTCCCTTAATAGA+GGG - chr4_1:6212614-6212633 Msa0532190:intron 35.0%
TATCCATTGCCCTCTATTAA+GGG + chr4_1:6212626-6212645 None:intergenic 35.0%
ATATCCATTGCCCTCTATTA+AGG + chr4_1:6212627-6212646 None:intergenic 35.0%
CGTACAGAAGTTTCAACTAT+AGG + chr4_1:6212750-6212769 None:intergenic 35.0%
TTGATATGTTTGAGTGGTGT+CGG - chr4_1:6212808-6212827 Msa0532190:intron 35.0%
TTGATTCTAACTTGAAGCTG+GGG - chr4_1:6212855-6212874 Msa0532190:intron 35.0%
CAAATAATGAGACTCTCAAG+TGG + chr4_1:6213085-6213104 None:intergenic 35.0%
GCATTGTACTCCTGAAAAAT+TGG + chr4_1:6213126-6213145 None:intergenic 35.0%
ATACGGACAATAGCTTAACT+GGG + chr4_1:6213320-6213339 None:intergenic 35.0%
!! AGATGGACTGATGAAGAAAA+TGG - chr4_1:6213410-6213429 Msa0532190:intron 35.0%
! GACTTTAGAAGAAACCCAAT+CGG + chr4_1:6213492-6213511 None:intergenic 35.0%
AAAAAGACACGTTTCTTGAG+CGG + chr4_1:6213518-6213537 None:intergenic 35.0%
CTGTATGATTATCTGTTAGG+AGG - chr4_1:6213585-6213604 Msa0532190:intron 35.0%
! CTTTTGGCCAAATTGTGATT+TGG - chr4_1:6213910-6213929 Msa0532190:intron 35.0%
GGAATTCCCAAATCACAATT+TGG + chr4_1:6213920-6213939 None:intergenic 35.0%
!! AACTGCTTTGATTTGGCATT+TGG + chr4_1:6213941-6213960 None:intergenic 35.0%
! CAAAGCAGTTTGTTTGTGAT+TGG - chr4_1:6213951-6213970 Msa0532190:intron 35.0%
AGGTTTCTATCATCAGTTCA+GGG + chr4_1:6214059-6214078 None:intergenic 35.0%
AAGGTTTCTATCATCAGTTC+AGG + chr4_1:6214060-6214079 None:intergenic 35.0%
GAACTGATGATAGAAACCTT+AGG - chr4_1:6214060-6214079 Msa0532190:intron 35.0%
TTGGACCTAACCTAATTTCT+TGG - chr4_1:6214097-6214116 Msa0532190:intron 35.0%
TTCTTGACCACCAAGAAATT+AGG + chr4_1:6214110-6214129 None:intergenic 35.0%
TCCAAATAGTTCACTAGATC+TGG - chr4_1:6214395-6214414 Msa0532190:CDS 35.0%
CCAAATAGTTCACTAGATCT+GGG - chr4_1:6214396-6214415 Msa0532190:CDS 35.0%
CAAATAGTTCACTAGATCTG+GGG - chr4_1:6214397-6214416 Msa0532190:CDS 35.0%
! CTTAGATCTCTAATTTTCCC+TGG - chr4_1:6214608-6214627 Msa0532190:intron 35.0%
CAGTGTCAATACATAGAATG+AGG + chr4_1:6214761-6214780 None:intergenic 35.0%
! CGTGTAGTAAGCATTTTGTT+CGG - chr4_1:6214839-6214858 Msa0532190:intron 35.0%
GAAATGTTTGAGCTACAGAT+TGG - chr4_1:6214864-6214883 Msa0532190:intron 35.0%
TAGAGAGGGAAATTTAGAGA+TGG - chr4_1:6215078-6215097 Msa0532190:CDS 35.0%
TCTAGTAGTGAATGTTTGAG+GGG - chr4_1:6215205-6215224 Msa0532190:intron 35.0%
ATTACTAGAGAATGACCAAG+TGG + chr4_1:6215272-6215291 None:intergenic 35.0%
TGAAATGGCAAAATACGTAC+AGG - chr4_1:6215462-6215481 Msa0532190:intron 35.0%
!!! ACATCAAAGGAGTTTTAAGC+AGG + chr4_1:6215881-6215900 None:intergenic 35.0%
GATACTATAAAGAGCAGATG+TGG + chr4_1:6216031-6216050 None:intergenic 35.0%
GTGTTTGGATTCCTAATGTT+CGG + chr4_1:6216053-6216072 None:intergenic 35.0%
CATCCCCTTTGTATAATACA+AGG - chr4_1:6216218-6216237 Msa0532190:intron 35.0%
TATTGATGTCGAGAGCTATT+GGG - chr4_1:6216336-6216355 Msa0532190:CDS 35.0%
CAGAAAGTTGAGTAACATTG+AGG + chr4_1:6216435-6216454 None:intergenic 35.0%
!! CTTTCTGAGTATCGAAAAGA+TGG - chr4_1:6216448-6216467 Msa0532190:CDS 35.0%
GAGGATTTGACAATTGTTCA+GGG + chr4_1:6216513-6216532 None:intergenic 35.0%
TGTATGCAATCAGAGTAAGA+CGG + chr4_1:6216535-6216554 None:intergenic 35.0%
CTTACTCTGATTGCATACAT+TGG - chr4_1:6216536-6216555 Msa0532190:intron 35.0%
! TGCTCTGTTGTTTGATACAA+GGG - chr4_1:6216704-6216723 Msa0532190:intron 35.0%
CTTCTAACACCTAAAGCTAA+AGG + chr4_1:6216896-6216915 None:intergenic 35.0%
! GGTTACAAGCATTTTTGACA+TGG - chr4_1:6216958-6216977 Msa0532190:CDS 35.0%
! TTTTGACATGGTCTTTTGTG+TGG - chr4_1:6216970-6216989 Msa0532190:exon 35.0%
! GATCTTTTAACCATGTGTAG+AGG - chr4_1:6217005-6217024 Msa0532190:five_prime_UTR 35.0%
GAATTCAAATCCTCTACACA+TGG + chr4_1:6217018-6217037 None:intergenic 35.0%
!! GAGGATTTGAATTCTAGTTC+TGG - chr4_1:6217024-6217043 Msa0532190:five_prime_UTR 35.0%
TGTGAATGGTACTACCATTG+TGG + chr4_1:6210817-6210836 None:intergenic 40.0%
!! GAATGTGAAGTGGGTTTTCA+TGG + chr4_1:6210844-6210863 None:intergenic 40.0%
TTGAGGTGATTAGGGAGATT+AGG + chr4_1:6210902-6210921 None:intergenic 40.0%
GCATACCTTGAGATTTCTTG+AGG + chr4_1:6210919-6210938 None:intergenic 40.0%
CTACTATAGGGTATAGTGGT+CGG - chr4_1:6211227-6211246 Msa0532190:CDS 40.0%
ATAGTGGTCGGAAAATTGCT+CGG - chr4_1:6211239-6211258 Msa0532190:CDS 40.0%
GTTCAAAGAGTTCGAGTCAT+CGG - chr4_1:6211269-6211288 Msa0532190:CDS 40.0%
GCCAATTGATCCGACATATA+AGG + chr4_1:6211382-6211401 None:intergenic 40.0%
! ATGATTTGGGGTATCAGCAT+TGG - chr4_1:6211422-6211441 Msa0532190:intron 40.0%
! GTACTAGTCGATGACCTTTT+TGG - chr4_1:6211545-6211564 Msa0532190:intron 40.0%
TTAACCAAATAGGACCTAGC+TGG - chr4_1:6211800-6211819 Msa0532190:intron 40.0%
GTTCAAGTGGAATAGGGAAT+TGG - chr4_1:6211939-6211958 Msa0532190:intron 40.0%
! AAAAAAGAGCACAGTTGTGG+GGG + chr4_1:6212397-6212416 None:intergenic 40.0%
GAAATGTGGGAAAAGTTGAG+AGG - chr4_1:6212574-6212593 Msa0532190:intron 40.0%
GGGAAAAGTTGAGAGGAAAA+AGG - chr4_1:6212581-6212600 Msa0532190:intron 40.0%
GTTGGAGATTCCCTTAATAG+AGG - chr4_1:6212613-6212632 Msa0532190:intron 40.0%
ATTCCCTTAATAGAGGGCAA+TGG - chr4_1:6212620-6212639 Msa0532190:intron 40.0%
TAGAGGGCAATGGATATCTA+TGG - chr4_1:6212630-6212649 Msa0532190:intron 40.0%
GACATTGATCTCTTATCAGC+AGG + chr4_1:6212679-6212698 None:intergenic 40.0%
! TCTTACCATTTTCAGAGCAG+AGG - chr4_1:6212711-6212730 Msa0532190:intron 40.0%
!! TCATACCTCTGCTCTGAAAA+TGG + chr4_1:6212719-6212738 None:intergenic 40.0%
!!! GTGTCGGTTGGAATTGATTT+TGG - chr4_1:6212824-6212843 Msa0532190:intron 40.0%
TGGAATGACAGAAGAAGGTA+CGG + chr4_1:6213004-6213023 None:intergenic 40.0%
ATAATGAGACTCTCAAGTGG+TGG + chr4_1:6213082-6213101 None:intergenic 40.0%
GAGTCTCATTATTTGCACAC+TGG - chr4_1:6213090-6213109 Msa0532190:intron 40.0%
ATGCAACAGTTGAATTCCTC+TGG - chr4_1:6213142-6213161 Msa0532190:intron 40.0%
TGCAACAGTTGAATTCCTCT+GGG - chr4_1:6213143-6213162 Msa0532190:intron 40.0%
TGAATCTAATTCCGACGATC+CGG - chr4_1:6213179-6213198 Msa0532190:intron 40.0%
TGAATCACAGACTGGATGAA+CGG - chr4_1:6213202-6213221 Msa0532190:intron 40.0%
GATACGGACAATAGCTTAAC+TGG + chr4_1:6213321-6213340 None:intergenic 40.0%
GGAGCTTGTGAAGAATTAGA+CGG - chr4_1:6213431-6213450 Msa0532190:intron 40.0%
! CTTTTGCTAGCAAGCATTCT+TGG - chr4_1:6213613-6213632 Msa0532190:intron 40.0%
AGATGCATTCTTGGAACTCT+TGG - chr4_1:6213996-6214015 Msa0532190:intron 40.0%
GACCTAACCTAATTTCTTGG+TGG - chr4_1:6214100-6214119 Msa0532190:intron 40.0%
GACCACCAAGAAATTAGGTT+AGG + chr4_1:6214105-6214124 None:intergenic 40.0%
TACGTTGGAATGAGCTACTA+GGG + chr4_1:6214139-6214158 None:intergenic 40.0%
TTAGCAAGACTTCTGTACGT+TGG + chr4_1:6214154-6214173 None:intergenic 40.0%
TCTTGCTAACACAACTTCAG+AGG - chr4_1:6214165-6214184 Msa0532190:CDS 40.0%
ACACAACTTCAGAGGATTTG+TGG - chr4_1:6214173-6214192 Msa0532190:CDS 40.0%
! ACAGTACAGGATAGGTTGAA+AGG + chr4_1:6214234-6214253 None:intergenic 40.0%
AGATTGTCACAGTACAGGAT+AGG + chr4_1:6214242-6214261 None:intergenic 40.0%
CTGTGACAATCTCTGCATTA+TGG - chr4_1:6214250-6214269 Msa0532190:CDS 40.0%
! TCTGAGGTTCCAAAGTCTAA+GGG - chr4_1:6214346-6214365 Msa0532190:intron 40.0%
TTTGCTTGTCCCTTAGACTT+TGG + chr4_1:6214358-6214377 None:intergenic 40.0%
GACAAGCAAACTCAGAATCA+TGG - chr4_1:6214368-6214387 Msa0532190:intron 40.0%
CCCAGATCTAGTGAACTATT+TGG + chr4_1:6214399-6214418 None:intergenic 40.0%
ACTACACGAACAATGTGACA+TGG + chr4_1:6214827-6214846 None:intergenic 40.0%
! TACTAGTACCACTTCTGAGA+GGG + chr4_1:6214995-6215014 None:intergenic 40.0%
ATACTAGTACCACTTCTGAG+AGG + chr4_1:6214996-6215015 None:intergenic 40.0%
GTCATTCTCTAGTAATTGCG+TGG - chr4_1:6215276-6215295 Msa0532190:intron 40.0%
ACTGCCGCACATATCATTAT+AGG - chr4_1:6215327-6215346 Msa0532190:intron 40.0%
CATGTGTCAAGAAAACTTGC+TGG - chr4_1:6215491-6215510 Msa0532190:intron 40.0%
! CTCACATCAGTCTTTTCACA+AGG + chr4_1:6215647-6215666 None:intergenic 40.0%
AAAACTCCTTTGATGTCCAC+TGG - chr4_1:6215885-6215904 Msa0532190:intron 40.0%
TCCAACTGAGCTATCTACTT+CGG - chr4_1:6215911-6215930 Msa0532190:intron 40.0%
AAACTACAGTGTGTGGTGTT+TGG + chr4_1:6216068-6216087 None:intergenic 40.0%
CAGTGTAAAACTACAGTGTG+TGG + chr4_1:6216075-6216094 None:intergenic 40.0%
CAATAGCTCTCGACATCAAT+AGG + chr4_1:6216337-6216356 None:intergenic 40.0%
CTATTGATGTCGAGAGCTAT+TGG - chr4_1:6216335-6216354 Msa0532190:CDS 40.0%
ATTGATGTCGAGAGCTATTG+GGG - chr4_1:6216337-6216356 Msa0532190:CDS 40.0%
GGAGGATTTGACAATTGTTC+AGG + chr4_1:6216514-6216533 None:intergenic 40.0%
AGTAACTCATTCCACGTATC+AGG + chr4_1:6216577-6216596 None:intergenic 40.0%
!! TTGCTGCTTTCCAAATGCAA+AGG + chr4_1:6216677-6216696 None:intergenic 40.0%
! CTGCTCTGTTGTTTGATACA+AGG - chr4_1:6216703-6216722 Msa0532190:intron 40.0%
!! GGTGTTGCTTCACAAAATCA+AGG - chr4_1:6216937-6216956 Msa0532190:CDS 40.0%
GCATTCTCAACTCTCCACAA+TGG - chr4_1:6210800-6210819 Msa0532190:three_prime_UTR 45.0%
!! CAATTGGCTTGTCACAAGCA+TGG - chr4_1:6211394-6211413 Msa0532190:CDS 45.0%
TCTATTCATGAGTGCGGCAA+TGG - chr4_1:6212188-6212207 Msa0532190:intron 45.0%
CTATTCATGAGTGCGGCAAT+GGG - chr4_1:6212189-6212208 Msa0532190:intron 45.0%
! AAAAAGAGCACAGTTGTGGG+GGG + chr4_1:6212396-6212415 None:intergenic 45.0%
!! TATGTTTGAGTGGTGTCGGT+TGG - chr4_1:6212812-6212831 Msa0532190:intron 45.0%
GTGTGTGGAATGACAGAAGA+AGG + chr4_1:6213009-6213028 None:intergenic 45.0%
TCATCCAGTCTGTGATTCAC+CGG + chr4_1:6213201-6213220 None:intergenic 45.0%
GCATGCTTCAGAACTGAATC+AGG + chr4_1:6213237-6213256 None:intergenic 45.0%
! ACATACTTGTGGTGGAGACA+AGG - chr4_1:6213294-6213313 Msa0532190:intron 45.0%
TGTGAAGAATTAGACGGACG+AGG - chr4_1:6213437-6213456 Msa0532190:intron 45.0%
ATTCTCACCAGAGATGTGTC+GGG + chr4_1:6213553-6213572 None:intergenic 45.0%
GATTCTCACCAGAGATGTGT+CGG + chr4_1:6213554-6213573 None:intergenic 45.0%
GTACGTTGGAATGAGCTACT+AGG + chr4_1:6214140-6214159 None:intergenic 45.0%
TGCAGAGATTGTCACAGTAC+AGG + chr4_1:6214247-6214266 None:intergenic 45.0%
! ATCAGCATGCTGGGTTGTTT+TGG + chr4_1:6214303-6214322 None:intergenic 45.0%
TGTAAGCAGATCAGCATGCT+GGG + chr4_1:6214312-6214331 None:intergenic 45.0%
TTGTAAGCAGATCAGCATGC+TGG + chr4_1:6214313-6214332 None:intergenic 45.0%
!! CTTAGACTTTGGAACCTCAG+AGG + chr4_1:6214347-6214366 None:intergenic 45.0%
!! CTCTGAGGTTCCAAAGTCTA+AGG - chr4_1:6214345-6214364 Msa0532190:intron 45.0%
! TTCACTAGATCTGGGGTTGA+AGG - chr4_1:6214404-6214423 Msa0532190:CDS 45.0%
! TCACTAGATCTGGGGTTGAA+GGG - chr4_1:6214405-6214424 Msa0532190:CDS 45.0%
! GAGCTACAGATTGGTTCAGT+TGG - chr4_1:6214873-6214892 Msa0532190:intron 45.0%
TAATGATATGTGCGGCAGTG+CGG + chr4_1:6215326-6215345 None:intergenic 45.0%
ACATTCCCTTTCCCTTTGCT+AGG - chr4_1:6215354-6215373 Msa0532190:intron 45.0%
CTTCATTGGGACCTAGCAAA+GGG + chr4_1:6215368-6215387 None:intergenic 45.0%
GGAATGTGGGATGCTTCATT+GGG + chr4_1:6215381-6215400 None:intergenic 45.0%
GGAAAACCAGTGGACATCAA+AGG + chr4_1:6215894-6215913 None:intergenic 45.0%
TAGCTCAGTTGGAAAACCAG+TGG + chr4_1:6215904-6215923 None:intergenic 45.0%
TCCGAAGTAGATAGCTCAGT+TGG + chr4_1:6215915-6215934 None:intergenic 45.0%
TAAAGAGCAGATGTGGGATG+TGG + chr4_1:6216024-6216043 None:intergenic 45.0%
CTCGGCTCCTAAATGAGAAA+AGG + chr4_1:6216270-6216289 None:intergenic 45.0%
CACTTTCTGGATTCCACTCT+CGG + chr4_1:6216288-6216307 None:intergenic 45.0%
GAGTGGAATCCAGAAAGTGA+AGG - chr4_1:6216289-6216308 Msa0532190:CDS 45.0%
! TTTGCCAACAATGAGCACTG+TGG - chr4_1:6216372-6216391 Msa0532190:CDS 45.0%
TTCTCCACAGTGCTCATTGT+TGG + chr4_1:6216379-6216398 None:intergenic 45.0%
ATGCAATCAGAGTAAGACGG+AGG + chr4_1:6216532-6216551 None:intergenic 45.0%
ATAACCGCGACCTTTGCATT+TGG - chr4_1:6216664-6216683 Msa0532190:intron 45.0%
CTTTCCAAATGCAAAGGTCG+CGG + chr4_1:6216671-6216690 None:intergenic 45.0%
!!! TTATTAATTAATTTTTTGTT+AGG - chr4_1:6215798-6215817 Msa0532190:intron 5.0%
GAGTCATCGGAGAGTGAGTT+CGG - chr4_1:6211282-6211301 Msa0532190:CDS 50.0%
! TGGGGTATCAGCATTGGAGA+TGG - chr4_1:6211428-6211447 Msa0532190:intron 50.0%
CGTTCCAGCTAGGTCCTATT+TGG + chr4_1:6211807-6211826 None:intergenic 50.0%
CTAGGTCATTCGTTCCAGCT+AGG + chr4_1:6211817-6211836 None:intergenic 50.0%
TCTGTGATTCACCGGATCGT+CGG + chr4_1:6213193-6213212 None:intergenic 50.0%
!! TTCTGAAGCATGCAGCACTC+TGG - chr4_1:6213244-6213263 Msa0532190:intron 50.0%
! TCTGAAGCATGCAGCACTCT+GGG - chr4_1:6213245-6213264 Msa0532190:intron 50.0%
ATTAGACGGACGAGGAGCTA+TGG - chr4_1:6213445-6213464 Msa0532190:intron 50.0%
TTCTCACCAGAGATGTGTCG+GGG + chr4_1:6213552-6213571 None:intergenic 50.0%
AAGATAGACGCAGGACCCTA+AGG + chr4_1:6214079-6214098 None:intergenic 50.0%
TTAGGGTCCTGCGTCTATCT+TGG - chr4_1:6214078-6214097 Msa0532190:intron 50.0%
GTTAGGTCCAAGATAGACGC+AGG + chr4_1:6214088-6214107 None:intergenic 50.0%
!! GAGCACTGGTTTGTGTGACA+AGG + chr4_1:6214276-6214295 None:intergenic 50.0%
!!! GTTGTTTTGGCATGGAGCAC+TGG + chr4_1:6214290-6214309 None:intergenic 50.0%
!!! CATGCTGGGTTGTTTTGGCA+TGG + chr4_1:6214298-6214317 None:intergenic 50.0%
CAAAGCCTTTGTCACCTCTG+AGG - chr4_1:6214330-6214349 Msa0532190:intron 50.0%
TGGAACCTCAGAGGTGACAA+AGG + chr4_1:6214338-6214357 None:intergenic 50.0%
AGTCTCAGCACAAGTCTCAC+TGG - chr4_1:6214520-6214539 Msa0532190:CDS 50.0%
GTTACATGCGAATAGGCGAC+TGG + chr4_1:6214554-6214573 None:intergenic 50.0%
AGGGATCTCAGTTGAGAGTG+TGG + chr4_1:6214645-6214664 None:intergenic 50.0%
TACTTCCTCCCTCTCAGAAG+TGG - chr4_1:6214984-6215003 Msa0532190:intron 50.0%
! TAGTACCACTTCTGAGAGGG+AGG + chr4_1:6214992-6215011 None:intergenic 50.0%
AAGGAGTCGTAGATGCCACT+TGG - chr4_1:6215254-6215273 Msa0532190:intron 50.0%
TGGGACCTAGCAAAGGGAAA+GGG + chr4_1:6215362-6215381 None:intergenic 50.0%
TTGGGACCTAGCAAAGGGAA+AGG + chr4_1:6215363-6215382 None:intergenic 50.0%
GCTTCATTGGGACCTAGCAA+AGG + chr4_1:6215369-6215388 None:intergenic 50.0%
GGGAATGTGGGATGCTTCAT+TGG + chr4_1:6215382-6215401 None:intergenic 50.0%
GACTGATGTGAGACGAGAAG+CGG - chr4_1:6215655-6215674 Msa0532190:intron 50.0%
TCTCATTTAGGAGCCGAGAG+TGG - chr4_1:6216272-6216291 Msa0532190:CDS 50.0%
GACAATTGTTCAGGGCGAAG+AGG + chr4_1:6216505-6216524 None:intergenic 50.0%
! TGCATACATTGGTGCTTGCC+AGG - chr4_1:6216547-6216566 Msa0532190:intron 50.0%
! GCATACATTGGTGCTTGCCA+GGG - chr4_1:6216548-6216567 Msa0532190:intron 50.0%
! CATACATTGGTGCTTGCCAG+GGG - chr4_1:6216549-6216568 Msa0532190:intron 50.0%
CAACAAGAAGTGGAGCCCAG+AGG + chr4_1:6213161-6213180 None:intergenic 55.0%
CGATCCGGTGAATCACAGAC+TGG - chr4_1:6213194-6213213 Msa0532190:intron 55.0%
AGGAGCTATGGAGTTGGCCA+TGG - chr4_1:6213457-6213476 Msa0532190:intron 55.0%
GGAGCTATGGAGTTGGCCAT+GGG - chr4_1:6213458-6213477 Msa0532190:intron 55.0%
GTCGAGAGCTATTGGGGAAG+TGG - chr4_1:6216343-6216362 Msa0532190:CDS 55.0%
TTCCACGTATCAGGTACCCC+TGG + chr4_1:6216568-6216587 None:intergenic 55.0%
GGTCGGAAAATTGCTCGGCG+TGG - chr4_1:6211244-6211263 Msa0532190:CDS 60.0%
CGGAAAATTGCTCGGCGTGG+CGG - chr4_1:6211247-6211266 Msa0532190:CDS 60.0%
CGGACGAGGAGCTATGGAGT+TGG - chr4_1:6213451-6213470 Msa0532190:intron 60.0%
TGGAGTTGGCCATGGGAGCA+TGG - chr4_1:6213465-6213484 Msa0532190:intron 60.0%
! GGAGTTGGCCATGGGAGCAT+GGG - chr4_1:6213466-6213485 Msa0532190:intron 60.0%
! CATGGGAGCATGGGCCGATT+GGG - chr4_1:6213475-6213494 Msa0532190:intron 60.0%
CCAGAGATGTGTCGGGGACA+TGG + chr4_1:6213546-6213565 None:intergenic 60.0%
CCATGTCCCCGACACATCTC+TGG - chr4_1:6213543-6213562 Msa0532190:intron 60.0%
ATATGTGCGGCAGTGCGGAG+AGG + chr4_1:6215321-6215340 None:intergenic 60.0%
!! TGCCAGGGGTACCTGATACG+TGG - chr4_1:6216563-6216582 Msa0532190:intron 60.0%
CCAATCGGCCCATGCTCCCA+TGG + chr4_1:6213477-6213496 None:intergenic 65.0%
! CCATGGGAGCATGGGCCGAT+TGG - chr4_1:6213474-6213493 Msa0532190:intron 65.0%
TGCGGCAGTGCGGAGAGGAA+GGG + chr4_1:6215316-6215335 None:intergenic 65.0%
GCGGCAGTGCGGAGAGGAAG+GGG + chr4_1:6215315-6215334 None:intergenic 70.0%
GTGCGGCAGTGCGGAGAGGA+AGG + chr4_1:6215317-6215336 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 6210632 6217078 6210632 ID=Msa0532190;Name=Msa0532190
chr4_1 mRNA 6210632 6217078 6210632 ID=Msa0532190-mRNA-1;Parent=Msa0532190;Name=Msa0532190-mRNA-1;_AED=0.27;_eAED=0.27;_QI=93|0.83|0.85|1|0.83|0.71|7|390|419
chr4_1 exon 6210632 6210876 6210632 ID=Msa0532190-mRNA-1:exon:2238;Parent=Msa0532190-mRNA-1
chr4_1 exon 6210953 6211428 6210953 ID=Msa0532190-mRNA-1:exon:2237;Parent=Msa0532190-mRNA-1
chr4_1 exon 6214146 6214298 6214146 ID=Msa0532190-mRNA-1:exon:2236;Parent=Msa0532190-mRNA-1
chr4_1 exon 6214379 6214575 6214379 ID=Msa0532190-mRNA-1:exon:2235;Parent=Msa0532190-mRNA-1
chr4_1 exon 6215059 6215149 6215059 ID=Msa0532190-mRNA-1:exon:2234;Parent=Msa0532190-mRNA-1
chr4_1 exon 6216234 6216513 6216234 ID=Msa0532190-mRNA-1:exon:2233;Parent=Msa0532190-mRNA-1
chr4_1 exon 6216778 6217078 6216778 ID=Msa0532190-mRNA-1:exon:2232;Parent=Msa0532190-mRNA-1
chr4_1 five_prime_UTR 6216986 6217078 6216986 ID=Msa0532190-mRNA-1:five_prime_utr;Parent=Msa0532190-mRNA-1
chr4_1 CDS 6216778 6216985 6216778 ID=Msa0532190-mRNA-1:cds;Parent=Msa0532190-mRNA-1
chr4_1 CDS 6216234 6216513 6216234 ID=Msa0532190-mRNA-1:cds;Parent=Msa0532190-mRNA-1
chr4_1 CDS 6215059 6215149 6215059 ID=Msa0532190-mRNA-1:cds;Parent=Msa0532190-mRNA-1
chr4_1 CDS 6214379 6214575 6214379 ID=Msa0532190-mRNA-1:cds;Parent=Msa0532190-mRNA-1
chr4_1 CDS 6214146 6214298 6214146 ID=Msa0532190-mRNA-1:cds;Parent=Msa0532190-mRNA-1
chr4_1 CDS 6211098 6211428 6211098 ID=Msa0532190-mRNA-1:cds;Parent=Msa0532190-mRNA-1
chr4_1 three_prime_UTR 6210953 6211097 6210953 ID=Msa0532190-mRNA-1:three_prime_utr;Parent=Msa0532190-mRNA-1
chr4_1 three_prime_UTR 6210632 6210876 6210632 ID=Msa0532190-mRNA-1:three_prime_utr;Parent=Msa0532190-mRNA-1
Gene Sequence

>Msa0532190

ATGCAGAAGATGAAATGGAACAAAAAGAAAGTTCCAATTTTTCCTTTTATCCTTCTTCTGTTATTAGTTTTCATAGCATTCTCAACTCTCCACAATGGTAGTACCATTCACAAATTCCATGAAAACCCACTTCACATTCATCAAGAACAAGCTTCTTCAACTACATATGTTAAACCTAATCTCCCTAATCACCTCAAGAAATCTCAAGAGATTTTGGATAGATATAGTAGATGCAACTCTACTATAGGGTATAGTGGTCGGAAAATTGCTCGGCGTGGCGGTTCAAAGAGTTCGAGTCATCGGAGAGTGAGTTCGGAAAGCTGTGATGTTTTTTCAGGCAAATGGGTGTTTGATAATGCTTCATATCCATTGTATAATGAATCAGATTGTCCTTATATGTCGGATCAATTGGCTTGTCACAAGCATGGAAGAAATGATTTGGGGTATCAGCATTGGAGATGGCAACCACATGATTGTGATTTGAAGAGGTGGAATGTAAAAGAAATGTGGGAAAAGTTGAGAGGAAAAAGGCTAATGTTTGTTGGAGATTCCCTTAATAGAGGGCAATGGATATCTATGGAGTACAATGCAACAGTTGAATTCCTCTGGGCTCCACTTCTTGTTGAATCTAATTCCGACGATCCGGTGAATCACAGACTGGATGAACGGATAATTCGTCCTGATTCAGTTCTGAAGCATGCAGCACTCTGGGAGCATGCTGATATACTTGTTTTCAATACATACTTGTGGTGGAGACAAGGCCCAGTTAAGCTATTATGGACTGATGAAGAAAATGGAGCTTGTGAAGAATTAGACGGACGAGGAGCTATGGAGTTGGCCATGGGAGCATGGGCCGATTGGGTTTCTTCTAAAGTCGATCCGCTCAAGAAACGTGTCTTTTTTGTAACCATGTCCCCGACACATCTCTGGAGCCGAGAGTGGAATCCAGAAAGTGAAGGAAATTGTTACGGCGAGAAGAAACCTATTGATGTCGAGAGCTATTGGGGAAGTGGTTCTGATTTGCCAACAATGAGCACTGTGGAGAACATCCTAAGCAGTTTAAATTCAAAAGTTTCTGTCCTCAATGTTACTCAACTTTCTGAGTATCGAAAAGATGGTCATCCTTCAATTTTTCGCAAATTTTGGGAGCCTCTTCGCCCTGAACAATTGTCAAATCCTCCGTCTTACTCTGATTGCATACATTGGTGCTTGCCAGGGGTACCTGATACGTGGAATGAGTTACTATTCCATTTTTTATGA
Protein sequence

>Msa0532190

MQKMKWNKKKVPIFPFILLLLLVFIAFSTLHNGSTIHKFHENPLHIHQEQASSTTYVKPNLPNHLKKSQEILDRYSRCNSTIGYSGRKIARRGGSKSSSHRRVSSESCDVFSGKWVFDNASYPLYNESDCPYMSDQLACHKHGRNDLGYQHWRWQPHDCDLKRWNVKEMWEKLRGKRLMFVGDSLNRGQWISMEYNATVEFLWAPLLVESNSDDPVNHRLDERIIRPDSVLKHAALWEHADILVFNTYLWWRQGPVKLLWTDEENGACEELDGRGAMELAMGAWADWVSSKVDPLKKRVFFVTMSPTHLWSREWNPESEGNCYGEKKPIDVESYWGSGSDLPTMSTVENILSSLNSKVSVLNVTQLSEYRKDGHPSIFRKFWEPLRPEQLSNPPSYSDCIHWCLPGVPDTWNELLFHFL*