AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0865420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865420 MtrunA17_Chr5g0448331 95.800 500 21 0 1 500 179 678 0.0 957
Msa0865420 MtrunA17_Chr8g0389931 85.051 495 69 2 1 494 172 662 0.0 839
Msa0865420 MtrunA17_Chr3g0143561 67.657 303 64 3 1 303 123 391 9.58e-146 424
Msa0865420 MtrunA17_Chr6g0470171 77.465 71 16 0 11 81 101 171 1.34e-30 117
Msa0865420 MtrunA17_Chr6g0476111 35.789 190 104 7 89 266 223 406 6.49e-22 99.4
Msa0865420 MtrunA17_Chr6g0470181 62.687 67 20 2 171 235 1 64 8.78e-21 86.3
Msa0865420 MtrunA17_Chr7g0252211 35.602 191 104 7 89 266 285 469 3.66e-20 94.0
Msa0865420 MtrunA17_Chr6g0476121 34.211 190 107 6 89 266 172 355 8.01e-20 92.8
Msa0865420 MtrunA17_Chr1g0163051 37.179 156 85 3 89 237 217 366 1.06e-18 89.4
Msa0865420 MtrunA17_Chr4g0003501 34.615 156 85 4 89 238 512 656 1.44e-16 83.2
Msa0865420 MtrunA17_Chr8g0368901 37.342 158 85 4 89 237 325 477 2.00e-16 82.4
Msa0865420 MtrunA17_Chr8g0369301 36.076 158 87 4 89 237 305 457 4.11e-16 81.3
Msa0865420 MtrunA17_Chr8g0368911 34.810 158 89 3 89 237 318 470 6.39e-16 80.9
Msa0865420 MtrunA17_Chr7g0255181 32.716 162 91 4 89 242 263 414 7.48e-15 77.4
Msa0865420 MtrunA17_Chr5g0399801 33.333 153 91 3 89 238 643 787 2.42e-14 76.3
Msa0865420 MtrunA17_Chr4g0003511 32.692 156 88 4 89 238 607 751 4.82e-13 72.0
Msa0865420 MtrunA17_Chr1g0163041 34.177 158 89 5 89 237 134 285 7.79e-13 70.9
Msa0865420 MtrunA17_Chr6g0467531 32.911 158 85 5 89 238 137 281 1.06e-11 67.4
Msa0865420 MtrunA17_Chr6g0467421 32.911 158 85 5 89 238 137 281 5.52e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865420 AT1G57820.1 64.254 456 152 5 1 453 192 639 0.0 615
Msa0865420 AT1G57820.3 64.254 456 152 5 1 453 192 639 0.0 615
Msa0865420 AT1G57820.2 63.596 456 152 6 1 453 192 636 0.0 604
Msa0865420 AT5G39550.1 63.679 424 140 5 1 423 176 586 0.0 558
Msa0865420 AT1G66050.1 64.819 415 135 4 1 414 176 580 0.0 557
Msa0865420 AT1G66040.1 64.819 415 135 4 1 414 176 580 0.0 557
Msa0865420 AT1G57800.2 59.698 464 174 9 1 458 204 660 0.0 553
Msa0865420 AT1G57800.1 59.179 463 174 9 1 458 204 656 0.0 545
Msa0865420 AT4G08590.2 59.794 291 101 5 1 290 155 430 2.18e-121 363
Msa0865420 AT4G08590.1 59.932 292 100 6 1 290 155 431 2.14e-120 361
Msa0865420 AT4G08590.6 59.857 279 95 6 1 277 155 418 9.18e-114 343
Msa0865420 AT4G08590.3 59.671 243 81 6 1 241 155 382 2.39e-95 295
Msa0865420 AT4G08590.4 57.333 225 80 5 1 224 155 364 9.57e-83 261
Msa0865420 AT4G08590.5 57.333 225 80 5 1 224 155 364 9.57e-83 261
Msa0865420 AT5G13960.1 30.037 273 150 9 89 347 153 398 1.10e-18 89.7
Msa0865420 AT5G13960.2 30.864 243 136 7 89 317 19 243 1.49e-18 89.0
Msa0865420 AT2G22740.2 36.774 155 92 3 89 238 334 487 6.61e-18 87.4
Msa0865420 AT2G22740.1 36.774 155 92 3 89 238 334 487 6.61e-18 87.4
Msa0865420 AT2G35160.5 36.250 160 91 5 89 241 333 488 1.82e-16 83.2
Msa0865420 AT2G35160.2 36.250 160 91 5 89 241 369 524 2.20e-16 82.8
Msa0865420 AT2G35160.3 36.250 160 91 5 89 241 369 524 2.20e-16 82.8
Msa0865420 AT2G35160.1 36.250 160 91 5 89 241 369 524 2.20e-16 82.8
Msa0865420 AT2G35160.4 36.250 160 91 5 89 241 369 524 2.20e-16 82.8
Msa0865420 AT5G04940.2 36.970 165 85 6 89 243 215 370 4.61e-16 81.6
Msa0865420 AT5G04940.1 36.970 165 85 6 89 243 215 370 4.61e-16 81.6
Msa0865420 AT2G33290.1 36.943 157 84 5 89 238 211 359 3.04e-15 79.0
Msa0865420 AT2G33290.3 36.943 157 84 5 89 238 211 359 3.04e-15 79.0
Msa0865420 AT2G33290.4 36.943 157 84 5 89 238 211 359 3.04e-15 79.0
Msa0865420 AT2G33290.2 36.943 157 84 5 89 238 211 359 3.04e-15 79.0
Msa0865420 AT4G13460.1 35.928 167 86 5 89 245 209 364 2.14e-14 76.3
Msa0865420 AT4G13460.2 35.928 167 86 5 89 245 209 364 2.14e-14 76.3
Msa0865420 AT1G73100.1 35.032 157 87 5 89 238 212 360 1.46e-11 67.4
Msa0865420 AT1G17770.1 31.707 164 88 5 89 241 231 381 5.32e-11 65.5

Find 178 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGATATTTACTGGATT+TGG 0.158578 5_4:-66058538 Msa0865420:three_prime_UTR
CCCCATGTTGCTGGCATTGC+TGG 0.208993 5_4:-66061339 Msa0865420:CDS
GCCAACTGTGCGTTGATTCT+TGG 0.223531 5_4:+66061654 None:intergenic
ACTATCCCAAAGGATCATTT+TGG 0.243586 5_4:-66061462 Msa0865420:CDS
TATTTACTGGATTTGGGAAT+TGG 0.289664 5_4:-66058531 Msa0865420:three_prime_UTR
AGTTTGAGAAAGATATTTAC+TGG 0.293829 5_4:-66058544 Msa0865420:three_prime_UTR
GAAAGATATTTACTGGATTT+GGG 0.294529 5_4:-66058537 Msa0865420:three_prime_UTR
ATTGAAGCATCTTGAACATT+TGG 0.311023 5_4:-66061841 Msa0865420:five_prime_UTR
GAACAGATGGAGGAGAATTC+TGG 0.311936 5_4:-66058948 Msa0865420:CDS
GGCTCAATCTGTCGCTCTCT+CGG 0.312147 5_4:-66061301 Msa0865420:CDS
TGATTATTTGTTGTTGTTGT+TGG 0.313450 5_4:-66061793 Msa0865420:five_prime_UTR
GGGTTCTTGTTGGTGATACT+TGG 0.318104 5_4:-66061401 Msa0865420:CDS
AAGGACGGCTTTATAGCTTT+TGG 0.324277 5_4:+66060069 None:intergenic
AGAACCCCACGGTTCCTATT+AGG 0.346266 5_4:+66061417 None:intergenic
TTTCTGGCCAAAGCTATATC+AGG 0.361815 5_4:-66059788 Msa0865420:CDS
GAGATCCCTTCCACCGCTTC+CGG 0.367014 5_4:+66061233 None:intergenic
ATCGGTCCAAAATGATCCTT+TGG 0.370324 5_4:+66061456 None:intergenic
TCGTATCTCACTCCTGCTTC+CGG 0.373745 5_4:+66060893 None:intergenic
TTGATCTGCAGTGATTTAAC+TGG 0.374427 5_4:-66060539 Msa0865420:intron
GTCTACATTTCAGGAGGAAA+AGG 0.376345 5_4:-66060184 Msa0865420:intron
CCCTGTTCCTGATATAGCTT+TGG 0.380875 5_4:+66059781 None:intergenic
GCCAAAGCTATATCAGGAAC+AGG 0.381465 5_4:-66059782 Msa0865420:CDS
TTGCTGAGTATGATCCTAAT+AGG 0.386285 5_4:-66061431 Msa0865420:CDS
ACAGCATGAGTTAATACAAC+AGG 0.395011 5_4:-66058663 Msa0865420:three_prime_UTR
GCTATCCTGTTCGTGTTGTT+AGG 0.395823 5_4:-66061122 Msa0865420:intron
TTCATCGGCTTCTTACTTTG+TGG 0.409729 5_4:+66060135 None:intergenic
TCCTGCTTCCGGTGCATAAG+AGG 0.411847 5_4:+66060904 None:intergenic
GAGACCTCGGTCTCTTCATC+CGG 0.413934 5_4:+66058891 None:intergenic
CTTGGATTAGTCGCCATCTT+CGG 0.417258 5_4:+66061672 None:intergenic
GCCATTTCTCAAAACACTTC+AGG 0.422976 5_4:+66061742 None:intergenic
CCTGTTGTTCAGCCTGTCGC+TGG 0.422987 5_4:+66058973 None:intergenic
TCGGCTTCTTACTTTGTGGT+GGG 0.424543 5_4:+66060139 None:intergenic
ACCTACTGTTAAGGAGTTCA+AGG 0.426796 5_4:-66060498 Msa0865420:CDS
ACAGGTTAACAGGGAAATGA+TGG 0.429592 5_4:-66059012 Msa0865420:intron
CCAGCGACAGGCTGAACAAC+AGG 0.433445 5_4:-66058973 Msa0865420:CDS
TAGGATGGAATGTAGGCAAT+GGG 0.434316 5_4:-66061373 Msa0865420:CDS
CAAACTTCTGGTCAAATGAC+TGG 0.435386 5_4:+66061184 None:intergenic
CAACTTCTGCAAAGGCTGCT+TGG 0.436051 5_4:-66059820 Msa0865420:CDS
CCTTTCTTCTTCTTCTGTGG+AGG 0.445223 5_4:+66058810 None:intergenic
TCACCTTTCTTCTTCTTCTG+TGG 0.446054 5_4:+66058807 None:intergenic
TCCTCTTATGCACCGGAAGC+AGG 0.456225 5_4:-66060905 Msa0865420:CDS
ATCGGCTTCTTACTTTGTGG+TGG 0.457795 5_4:+66060138 None:intergenic
AAACAGTGGCTTGCAATTAG+AGG 0.458150 5_4:-66058725 Msa0865420:exon
TGATACTTGGGAGGATAGGA+TGG 0.459421 5_4:-66061388 Msa0865420:CDS
ATCAACCTTGTCCATGGAGC+TGG 0.459843 5_4:+66060660 None:intergenic
GGTTCTTGTTGGTGATACTT+GGG 0.460044 5_4:-66061400 Msa0865420:CDS
TTGCGAACCAGTTGCCGAAA+AGG 0.463278 5_4:-66061144 Msa0865420:CDS
ACCCTCTGCCCTAGCTAGCT+TGG 0.468975 5_4:+66061614 None:intergenic
GAGAAATGTTGGCGCAAAGT+TGG 0.471436 5_4:-66060854 Msa0865420:CDS
ACTGAGAGAGCAAAGAAAAC+AGG 0.475684 5_4:-66061519 Msa0865420:CDS
CCCTAGCTAGCTTGGCCATA+CGG 0.475905 5_4:+66061622 None:intergenic
GGCTTCTTACTTTGTGGTGG+GGG 0.477531 5_4:+66060141 None:intergenic
TTCTGCAAAGGCTGCTTGGA+GGG 0.479805 5_4:-66059816 Msa0865420:CDS
ACGAACCTAACAACACGAAC+AGG 0.481034 5_4:+66061117 None:intergenic
CTCAGCTATGTCAGTTGCAC+AGG 0.481756 5_4:+66059704 None:intergenic
GCTCAATCTGTCGCTCTCTC+GGG 0.483213 5_4:-66061300 Msa0865420:CDS
CAATATCTGTCGCAAGGTGT+TGG 0.483430 5_4:-66059871 Msa0865420:CDS
TCGCCCACTACCTACTGTTA+AGG 0.485754 5_4:-66060507 Msa0865420:CDS
GACTGCAATTCCACCGAAGA+TGG 0.491750 5_4:-66061685 Msa0865420:exon
GATATAGCTTTGGCCAGAAA+AGG 0.492720 5_4:+66059791 None:intergenic
TATGTAGACGACGAGGATCA+TGG 0.492748 5_4:-66061273 Msa0865420:CDS
AACTCCTTAACAGTAGGTAG+TGG 0.497268 5_4:+66060503 None:intergenic
TCTACATTTCAGGAGGAAAA+GGG 0.498002 5_4:-66060183 Msa0865420:intron
AGGAAAAGGGCTGTTGGCTG+TGG 0.498699 5_4:-66060170 Msa0865420:CDS
CTCAAAGTGGACGCAGTTTG+CGG 0.499275 5_4:-66059755 Msa0865420:CDS
TTCCACCGCTTCCGGTGTAA+AGG 0.500920 5_4:+66061241 None:intergenic
TGAGCACAAGGTGTAGTAAG+AGG 0.501591 5_4:+66059843 None:intergenic
TCAGTGGTGTAGCATGTGTC+AGG 0.501859 5_4:+66061537 None:intergenic
GAAGTTTGAAAATATGAATG+AGG 0.501935 5_4:-66061169 Msa0865420:CDS
CGTTGATATTACTGAAAGAA+AGG 0.503780 5_4:-66060471 Msa0865420:CDS
TTGGTGATACTTGGGAGGAT+AGG 0.509145 5_4:-66061392 Msa0865420:CDS
AGAGGAACGTTTCTCCTTGT+GGG 0.509810 5_4:+66060922 None:intergenic
AGGAACCGTGGGGTTCTTGT+TGG 0.510062 5_4:-66061411 Msa0865420:CDS
ATTGCTGGTCAGAGTACCTA+CGG 0.510813 5_4:-66061324 Msa0865420:CDS
ACCAGCAATGCCAGCAACAT+GGG 0.512898 5_4:+66061338 None:intergenic
AACATATGATAGCTATAGAT+AGG 0.514835 5_4:+66058492 None:intergenic
TGGTTCCTTTACACCGGAAG+CGG 0.515629 5_4:-66061246 Msa0865420:CDS
ATGTAGACGACGAGGATCAT+GGG 0.519044 5_4:-66061272 Msa0865420:CDS
CTTCTGCAAAGGCTGCTTGG+AGG 0.520625 5_4:-66059817 Msa0865420:CDS
GCTAGGGCAGAGGGTGTTGG+TGG 0.520678 5_4:-66061606 Msa0865420:CDS
AAGAAGAAGAAAGGTGATGA+TGG 0.520820 5_4:-66058801 Msa0865420:CDS
AAAGCCGTCCTTCAAAATCA+AGG 0.522404 5_4:-66060058 Msa0865420:CDS
CTATTATTTGCTCAAAGACA+AGG 0.523069 5_4:-66058608 Msa0865420:three_prime_UTR
AACGAACTTGCTCAAACTGC+AGG 0.523430 5_4:-66061707 Msa0865420:five_prime_UTR
AAAGAAAGGATGATCCATCA+TGG 0.523766 5_4:-66060457 Msa0865420:CDS
GGAAAGGCTAATGCTTGCAG+TGG 0.524369 5_4:-66061498 Msa0865420:CDS
TTCAGGAGGAAAAGGGCTGT+TGG 0.527911 5_4:-66060176 Msa0865420:intron
TATACAGAATTGAGAAATGT+TGG 0.531104 5_4:-66060865 Msa0865420:CDS
TTGCTGGTCAGAGTACCTAC+GGG 0.532070 5_4:-66061323 Msa0865420:CDS
GATAGAATCACTCCAGCGAC+AGG 0.535002 5_4:-66058985 Msa0865420:CDS
AAGAGGAACGTTTCTCCTTG+TGG 0.535286 5_4:+66060921 None:intergenic
CCTCCACAGAAGAAGAAGAA+AGG 0.537509 5_4:-66058810 Msa0865420:CDS
CGGCTTCTTACTTTGTGGTG+GGG 0.538312 5_4:+66060140 None:intergenic
TCGGTCCAAAATGATCCTTT+GGG 0.540321 5_4:+66061457 None:intergenic
TTTACACCGGAAGCGGTGGA+AGG 0.542736 5_4:-66061239 Msa0865420:CDS
CTAGCTAGGGCAGAGGGTGT+TGG 0.546860 5_4:-66061609 Msa0865420:CDS
GACCAGCAATGCCAGCAACA+TGG 0.551617 5_4:+66061337 None:intergenic
GATAGGGTCATAAGGTCTGC+AGG 0.554621 5_4:-66060710 Msa0865420:intron
TTGCAGAAGTTGTGAGCACA+AGG 0.559804 5_4:+66059831 None:intergenic
GAGTGAAGAAAATGACAAGC+CGG 0.561110 5_4:-66058910 Msa0865420:CDS
AGGCAGAAATTGTGCCCACA+TGG 0.561703 5_4:+66061762 None:intergenic
GAGCACAAGGTGTAGTAAGA+GGG 0.563587 5_4:+66059844 None:intergenic
TCTTGTTGGTGATACTTGGG+AGG 0.566196 5_4:-66061397 Msa0865420:CDS
ACAAATTGATGAGGCTGGAG+TGG 0.566569 5_4:-66058754 Msa0865420:CDS
GGATTAGTCGCCATCTTCGG+TGG 0.567166 5_4:+66061675 None:intergenic
TTTGAGAAATGGCTTGGGCA+AGG 0.567925 5_4:-66061732 Msa0865420:five_prime_UTR
GCGGTGGAAGGGATCTCAGT+GGG 0.568471 5_4:-66061227 Msa0865420:CDS
CTTACATCAAAGTCCCATGA+TGG 0.576030 5_4:+66060443 None:intergenic
TTCCTTTACACCGGAAGCGG+TGG 0.576676 5_4:-66061243 Msa0865420:CDS
GGGAGGATAGGATGGAATGT+AGG 0.579330 5_4:-66061380 Msa0865420:CDS
CTTTCTTTCAGTAATATCAA+CGG 0.579868 5_4:+66060472 None:intergenic
ATGATCCTAATAGGAACCGT+GGG 0.580583 5_4:-66061422 Msa0865420:CDS
GAGGAACAAATTGATGAGGC+TGG 0.582753 5_4:-66058759 Msa0865420:CDS
AAGCAGGAGTGAGATACGAT+GGG 0.584452 5_4:-66060889 Msa0865420:CDS
GCTTGCAATTAGAGGTGGAT+CGG 0.585170 5_4:-66058717 Msa0865420:exon
TCTGCAGGTATTTGTTTGTG+AGG 0.586985 5_4:-66060695 Msa0865420:CDS
CGTCCTTCAAAATCAAGGAT+AGG 0.587442 5_4:-66060053 Msa0865420:CDS
GAAACGTTCCTCTTATGCAC+CGG 0.590337 5_4:-66060912 Msa0865420:CDS
CAGTAGGTAGTGGGCGAGGA+CGG 0.590658 5_4:+66060513 None:intergenic
GTGACAATGAGCCAGCTCCA+TGG 0.592691 5_4:-66060671 Msa0865420:CDS
GCCAAGCTAGCTAGGGCAGA+GGG 0.594474 5_4:-66061615 Msa0865420:CDS
ATGAGCCAGCTCCATGGACA+AGG 0.595160 5_4:-66060665 Msa0865420:intron
ATCAAGGATAGGCTATTGAA+AGG 0.595479 5_4:-66060042 Msa0865420:intron
TCCAAGAATCAACGCACAGT+TGG 0.595787 5_4:-66061655 Msa0865420:CDS
ATAGGATGGAATGTAGGCAA+TGG 0.595954 5_4:-66061374 Msa0865420:CDS
AAAGGATCCACAATGTTCAT+CGG 0.596534 5_4:+66060120 None:intergenic
TTACACCGGAAGCGGTGGAA+GGG 0.597699 5_4:-66061238 Msa0865420:CDS
AAGAAAGGATGATCCATCAT+GGG 0.600210 5_4:-66060456 Msa0865420:CDS
AGCACAAGGTGTAGTAAGAG+GGG 0.602277 5_4:+66059845 None:intergenic
CAGTGGCTTGCAATTAGAGG+TGG 0.602583 5_4:-66058722 Msa0865420:exon
GAAGCAGGAGTGAGATACGA+TGG 0.604687 5_4:-66060890 Msa0865420:CDS
AGGAACAGGGCGACTCAAAG+TGG 0.605619 5_4:-66059768 Msa0865420:CDS
GAAGAAAGGTGATGATGGCA+AGG 0.606822 5_4:-66058796 Msa0865420:CDS
CAGGTTAACAGGGAAATGAT+GGG 0.608219 5_4:-66059011 Msa0865420:CDS
CAATCTGTCGCTCTCTCGGG+TGG 0.608341 5_4:-66061297 Msa0865420:CDS
GGCCAAGCTAGCTAGGGCAG+AGG 0.611782 5_4:-66061616 Msa0865420:CDS
TGTGCTCACAACTTCTGCAA+AGG 0.612302 5_4:-66059828 Msa0865420:CDS
TGAGTATCTTCAGAATCCAC+AGG 0.613570 5_4:-66059685 Msa0865420:intron
TTGTTGGTTCAGACTCCATG+TGG 0.613959 5_4:-66061777 Msa0865420:five_prime_UTR
GGGGAGTGGTTCCTTTACAC+CGG 0.614315 5_4:-66061252 Msa0865420:CDS
GGATCATACTCAGCAAGGAT+CGG 0.615543 5_4:+66061438 None:intergenic
TGGTTGCAATATCTGTCGCA+AGG 0.615751 5_4:-66059877 Msa0865420:CDS
CCGTATGGCCAAGCTAGCTA+GGG 0.621370 5_4:-66061622 Msa0865420:CDS
TAAGAAGCCGATGAACATTG+TGG 0.621417 5_4:-66060127 Msa0865420:CDS
AGGTGATGATGGCAAGGCTG+TGG 0.621772 5_4:-66058790 Msa0865420:CDS
TGAACAACAGGAAGAACAGA+TGG 0.623198 5_4:-66058961 Msa0865420:CDS
CAGCATGAGTTAATACAACA+GGG 0.623416 5_4:-66058662 Msa0865420:three_prime_UTR
TATTAGGATCATACTCAGCA+AGG 0.623524 5_4:+66061433 None:intergenic
TGGCAAGGCTGTGGTGAATG+TGG 0.625687 5_4:-66058781 Msa0865420:CDS
ACGACGAGGATCATGGGGAG+TGG 0.626547 5_4:-66061266 Msa0865420:CDS
GAGAGCAAAGAAAACAGGAA+AGG 0.626777 5_4:-66061514 Msa0865420:CDS
TTAACAGTAGGTAGTGGGCG+AGG 0.626993 5_4:+66060509 None:intergenic
GAAAGGCTAATGCTTGCAGT+GGG 0.626997 5_4:-66061497 Msa0865420:CDS
TATGATCCTAATAGGAACCG+TGG 0.637653 5_4:-66061423 Msa0865420:CDS
AATCTTCGTGACTATCCCAA+AGG 0.640437 5_4:-66061472 Msa0865420:CDS
TATTTGGTTCAGGTCCCACA+AGG 0.642027 5_4:-66060936 Msa0865420:intron
CCCTTGAACTCCTTAACAGT+AGG 0.642926 5_4:+66060497 None:intergenic
CCAAAGCTATATCAGGAACA+GGG 0.649568 5_4:-66059781 Msa0865420:CDS
GCTATGTCAGTTGCACAGGT+AGG 0.652259 5_4:+66059708 None:intergenic
GTTGGCGATTGCGATCCGTA+TGG 0.654592 5_4:-66061637 Msa0865420:CDS
TGTAGACGACGAGGATCATG+GGG 0.654974 5_4:-66061271 Msa0865420:CDS
ACTCCTTAACAGTAGGTAGT+GGG 0.656580 5_4:+66060504 None:intergenic
CCAGCAATGCCAGCAACATG+GGG 0.663982 5_4:+66061339 None:intergenic
ACAACAGGAAGAACAGATGG+AGG 0.670527 5_4:-66058958 Msa0865420:CDS
TGTTGGTTCAGACTCCATGT+GGG 0.679292 5_4:-66061776 Msa0865420:five_prime_UTR
AGGATGGAATGTAGGCAATG+GGG 0.694397 5_4:-66061372 Msa0865420:CDS
CCTACTGTTAAGGAGTTCAA+GGG 0.697230 5_4:-66060497 Msa0865420:CDS
TGTGGAGGAACAAATTGATG+AGG 0.702307 5_4:-66058763 Msa0865420:CDS
TGGAGTGGAAAGCAAAACAG+TGG 0.708838 5_4:-66058739 Msa0865420:CDS
AGCAGGAGTGAGATACGATG+GGG 0.713889 5_4:-66060888 Msa0865420:CDS
CAAGGCTGTGGTGAATGTGG+AGG 0.722052 5_4:-66058778 Msa0865420:CDS
CAAGCCGGATGAAGAGACCG+AGG 0.726337 5_4:-66058895 Msa0865420:CDS
AGTCGTGGAGGAAATTAACG+AGG 0.732114 5_4:-66058844 Msa0865420:CDS
AGCGGTGGAAGGGATCTCAG+TGG 0.736744 5_4:-66061228 Msa0865420:CDS
TATCACCAACAAGAACCCCA+CGG 0.739370 5_4:+66061406 None:intergenic
TGCTGGTCAGAGTACCTACG+GGG 0.755559 5_4:-66061322 Msa0865420:CDS
TGATCCTAATAGGAACCGTG+GGG 0.767429 5_4:-66061421 Msa0865420:CDS
GGGTGGTTATGTAGACGACG+AGG 0.777978 5_4:-66061280 Msa0865420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTATTAAGTTTAAATTT+TGG - chr5_4:66060014-66060033 Msa0865420:intron 10.0%
!!! ATATTTGTTTTAATCAATTA+TGG - chr5_4:66060789-66060808 Msa0865420:intron 10.0%
!!! AGAACAACTTGATAATTTTT+TGG + chr5_4:66058735-66058754 None:intergenic 20.0%
!!! TGATTAATTGATTCCTTATT+AGG - chr5_4:66059290-66059309 Msa0865420:intron 20.0%
!!! AACTTTTATTTTTCCTATCT+GGG - chr5_4:66059679-66059698 Msa0865420:intron 20.0%
!!! TTTTATTAGCCTAGTTTTTA+GGG - chr5_4:66060709-66060728 Msa0865420:intron 20.0%
!! TTAATAATCATATTGATGTC+AGG - chr5_4:66060762-66060781 Msa0865420:intron 20.0%
!! AGATTAGGAATACAATTAAA+AGG + chr5_4:66060854-66060873 None:intergenic 20.0%
!!! TCAATATTTTAAGTACCTAA+AGG + chr5_4:66061033-66061052 None:intergenic 20.0%
!!! TGAAAATGTTTGAAGTTTTT+TGG - chr5_4:66061098-66061117 Msa0865420:intron 20.0%
!!! CTTATTTATGATCTTTTAAC+AGG - chr5_4:66061275-66061294 Msa0865420:CDS 20.0%
!!! TGATTATTTGTTGTTGTTGT+TGG - chr5_4:66058512-66058531 Msa0865420:three_prime_UTR 25.0%
!! CATTCATATTTTCAAACTTC+TGG + chr5_4:66059136-66059155 None:intergenic 25.0%
! GAAGTTTGAAAATATGAATG+AGG - chr5_4:66059136-66059155 Msa0865420:intron 25.0%
! ACAGATCTAACAAACTAATA+AGG + chr5_4:66059249-66059268 None:intergenic 25.0%
! ACAATGAAACTAACCTAATA+AGG + chr5_4:66059306-66059325 None:intergenic 25.0%
!!! TTGGTATGCTATTTTGTTTA+TGG - chr5_4:66059339-66059358 Msa0865420:intron 25.0%
! TGTTTATGGATCTGTTTATT+TGG - chr5_4:66059353-66059372 Msa0865420:intron 25.0%
! TATACAGAATTGAGAAATGT+TGG - chr5_4:66059440-66059459 Msa0865420:intron 25.0%
! GATAGGAAAAATAAAAGTTG+AGG + chr5_4:66059678-66059697 None:intergenic 25.0%
!!! CAACTTTTATTTTTCCTATC+TGG - chr5_4:66059678-66059697 Msa0865420:intron 25.0%
! AATATATACAAGTGGAAGTA+TGG - chr5_4:66059718-66059737 Msa0865420:CDS 25.0%
! CTTTCTTTCAGTAATATCAA+CGG + chr5_4:66059836-66059855 None:intergenic 25.0%
!!! TGTTAATTTGTCTACATTTC+AGG - chr5_4:66060112-66060131 Msa0865420:CDS 25.0%
!! TGAATTTTTGTTGGATCAAA+AGG + chr5_4:66060206-66060225 None:intergenic 25.0%
!! CTGACAATTTGAATTTTTGT+TGG + chr5_4:66060215-66060234 None:intergenic 25.0%
! CAACAAAAATTCAAATTGTC+AGG - chr5_4:66060213-66060232 Msa0865420:intron 25.0%
!!! TTAATTGTTTTTGCAGAGTT+TGG - chr5_4:66060408-66060427 Msa0865420:intron 25.0%
!!! GTTTTATTAGCCTAGTTTTT+AGG - chr5_4:66060708-66060727 Msa0865420:CDS 25.0%
! CAATTAAAAGGAATTCAACA+AGG + chr5_4:66060842-66060861 None:intergenic 25.0%
! GGAAAGTTTCATAGTAAATT+AGG + chr5_4:66060897-66060916 None:intergenic 25.0%
! AGAATTTCACATTCTCAAAA+AGG + chr5_4:66060922-66060941 None:intergenic 25.0%
! TAGTGTTTACTATATTGTCT+TGG - chr5_4:66060959-66060978 Msa0865420:intron 25.0%
! AGTGTTTACTATATTGTCTT+GGG - chr5_4:66060960-66060979 Msa0865420:intron 25.0%
!! ACTTCAAACATTTTCATACA+CGG + chr5_4:66060999-66061018 None:intergenic 25.0%
!!! AAGTTTTTTGGCAAATCTTT+AGG - chr5_4:66061110-66061129 Msa0865420:intron 25.0%
! AGTTTGAGAAAGATATTTAC+TGG - chr5_4:66061761-66061780 Msa0865420:five_prime_UTR 25.0%
! AGAAAGATATTTACTGGATT+TGG - chr5_4:66061767-66061786 Msa0865420:five_prime_UTR 25.0%
! GAAAGATATTTACTGGATTT+GGG - chr5_4:66061768-66061787 Msa0865420:five_prime_UTR 25.0%
!!! TTTGGGAATTGGTTTTTAAT+TGG - chr5_4:66061785-66061804 Msa0865420:five_prime_UTR 25.0%
! AACATATGATAGCTATAGAT+AGG + chr5_4:66061816-66061835 None:intergenic 25.0%
! ATTGAAGCATCTTGAACATT+TGG - chr5_4:66058464-66058483 Msa0865420:three_prime_UTR 30.0%
CATTGTGATATGTGATGAAT+TGG - chr5_4:66059320-66059339 Msa0865420:intron 30.0%
TGAACAATCGATAATCCATT+AGG + chr5_4:66059543-66059562 None:intergenic 30.0%
! TGTTCAAGCTTTATCATTGA+TGG - chr5_4:66059557-66059576 Msa0865420:intron 30.0%
! GTTCAAGCTTTATCATTGAT+GGG - chr5_4:66059558-66059577 Msa0865420:intron 30.0%
! TTCAAGCTTTATCATTGATG+GGG - chr5_4:66059559-66059578 Msa0865420:intron 30.0%
!!! GGGAATCTTTTTTTGTGATA+GGG - chr5_4:66059579-66059598 Msa0865420:intron 30.0%
!!! TTTTTTGTGATAGGGTCATA+AGG - chr5_4:66059587-66059606 Msa0865420:intron 30.0%
GTTGCACTAATATATACAAG+TGG - chr5_4:66059710-66059729 Msa0865420:CDS 30.0%
CGTTGATATTACTGAAAGAA+AGG - chr5_4:66059834-66059853 Msa0865420:CDS 30.0%
!! TTTTGGGAAGATTATTTGCT+AGG - chr5_4:66060031-66060050 Msa0865420:intron 30.0%
! TAATTTGTCTACATTTCAGG+AGG - chr5_4:66060115-66060134 Msa0865420:CDS 30.0%
! ATAGGCTATTGAAAGGTATA+TGG - chr5_4:66060270-66060289 Msa0865420:intron 30.0%
GAAGTTAATTGTTATCACCA+AGG + chr5_4:66060297-66060316 None:intergenic 30.0%
AAAACACCTTCAAATAACAG+TGG + chr5_4:66060337-66060356 None:intergenic 30.0%
! TGTTAATTCAGTTTTGCCTT+TGG - chr5_4:66060385-66060404 Msa0865420:intron 30.0%
CTGCAAAAACAATTAACCAA+AGG + chr5_4:66060404-66060423 None:intergenic 30.0%
AATGAAAAGAACTGTCTTGT+TGG - chr5_4:66060673-66060692 Msa0865420:CDS 30.0%
TAGTCATTTCATAGCAGATT+AGG + chr5_4:66060869-66060888 None:intergenic 30.0%
TTTCACATTCTCAAAAAGGT+TGG + chr5_4:66060918-66060937 None:intergenic 30.0%
!!! AAGTTTTGTTGCAAACCTTT+AGG - chr5_4:66061015-66061034 Msa0865420:intron 30.0%
! AGTTTTGCTCTACATAAAAG+AGG - chr5_4:66061241-66061260 Msa0865420:CDS 30.0%
! TGATCTTTTAACAGGTTAAC+AGG - chr5_4:66061283-66061302 Msa0865420:CDS 30.0%
! GATCTTTTAACAGGTTAACA+GGG - chr5_4:66061284-66061303 Msa0865420:CDS 30.0%
!!! GGTTCGTGTTGTTTTATTTT+GGG - chr5_4:66061609-66061628 Msa0865420:CDS 30.0%
CTATTATTTGCTCAAAGACA+AGG - chr5_4:66061697-66061716 Msa0865420:five_prime_UTR 30.0%
TATTTACTGGATTTGGGAAT+TGG - chr5_4:66061774-66061793 Msa0865420:five_prime_UTR 30.0%
!!! AAGTGTTTTGAGAAATGGCT+TGG - chr5_4:66058567-66058586 Msa0865420:three_prime_UTR 35.0%
!!! AGTGTTTTGAGAAATGGCTT+GGG - chr5_4:66058568-66058587 Msa0865420:three_prime_UTR 35.0%
! ACTATCCCAAAGGATCATTT+TGG - chr5_4:66058843-66058862 Msa0865420:CDS 35.0%
TATTAGGATCATACTCAGCA+AGG + chr5_4:66058875-66058894 None:intergenic 35.0%
TTGCTGAGTATGATCCTAAT+AGG - chr5_4:66058874-66058893 Msa0865420:CDS 35.0%
! TGGATCTGTTTATTTGGTTC+AGG - chr5_4:66059359-66059378 Msa0865420:intron 35.0%
!!! GGGGAATCTTTTTTTGTGAT+AGG - chr5_4:66059578-66059597 Msa0865420:intron 35.0%
ACAAAAATCAACCTTGTCCA+TGG + chr5_4:66059654-66059673 None:intergenic 35.0%
TTGATCTGCAGTGATTTAAC+TGG - chr5_4:66059766-66059785 Msa0865420:CDS 35.0%
AAAGAAAGGATGATCCATCA+TGG - chr5_4:66059848-66059867 Msa0865420:CDS 35.0%
AAGAAAGGATGATCCATCAT+GGG - chr5_4:66059849-66059868 Msa0865420:CDS 35.0%
AACTATGGTACAGCAAAGTT+GGG + chr5_4:66060073-66060092 None:intergenic 35.0%
AAACTATGGTACAGCAAAGT+TGG + chr5_4:66060074-66060093 None:intergenic 35.0%
! GCTGTACCATAGTTTTTGTA+AGG - chr5_4:66060079-66060098 Msa0865420:CDS 35.0%
GAGAGACCTTACAAAAACTA+TGG + chr5_4:66060088-66060107 None:intergenic 35.0%
TCTACATTTCAGGAGGAAAA+GGG - chr5_4:66060122-66060141 Msa0865420:CDS 35.0%
AAAGGATCCACAATGTTCAT+CGG + chr5_4:66060188-66060207 None:intergenic 35.0%
!! CTATCCTTGATTTTGAAGGA+CGG + chr5_4:66060254-66060273 None:intergenic 35.0%
! TAGCCTATCCTTGATTTTGA+AGG + chr5_4:66060258-66060277 None:intergenic 35.0%
ATCAAGGATAGGCTATTGAA+AGG - chr5_4:66060263-66060282 Msa0865420:intron 35.0%
! ATTGAAAGGTATATGGTCCT+TGG - chr5_4:66060277-66060296 Msa0865420:intron 35.0%
ATAACAGTGGTCTAAGGAAA+AGG + chr5_4:66060324-66060343 None:intergenic 35.0%
CTTCAAATAACAGTGGTCTA+AGG + chr5_4:66060330-66060349 None:intergenic 35.0%
! CTTAGACCACTGTTATTTGA+AGG - chr5_4:66060328-66060347 Msa0865420:intron 35.0%
!! TGTCTTGTTGGACTTTTAGT+TGG - chr5_4:66060685-66060704 Msa0865420:CDS 35.0%
!! GTCTTGTTGGACTTTTAGTT+GGG - chr5_4:66060686-66060705 Msa0865420:CDS 35.0%
!!! TTAGCCTAGTTTTTAGGGTT+TGG - chr5_4:66060714-66060733 Msa0865420:intron 35.0%
CAAACCAAACCCTAAAAACT+AGG + chr5_4:66060721-66060740 None:intergenic 35.0%
TGAGAATGTGAAATTCTGTC+TGG - chr5_4:66060925-66060944 Msa0865420:CDS 35.0%
AAGAAGAAGAAAGGTGATGA+TGG - chr5_4:66061504-66061523 Msa0865420:CDS 35.0%
!!! CGGTTCGTGTTGTTTTATTT+TGG - chr5_4:66061608-66061627 Msa0865420:CDS 35.0%
ACAGCATGAGTTAATACAAC+AGG - chr5_4:66061642-66061661 Msa0865420:CDS 35.0%
CAGCATGAGTTAATACAACA+GGG - chr5_4:66061643-66061662 Msa0865420:CDS 35.0%
!!! GCCTGAAGTGTTTTGAGAAA+TGG - chr5_4:66058562-66058581 Msa0865420:three_prime_UTR 40.0%
GCCATTTCTCAAAACACTTC+AGG + chr5_4:66058566-66058585 None:intergenic 40.0%
! TGTTTTCTTTGCTCTCTCAG+TGG + chr5_4:66058787-66058806 None:intergenic 40.0%
ACTGAGAGAGCAAAGAAAAC+AGG - chr5_4:66058786-66058805 Msa0865420:CDS 40.0%
GAGAGCAAAGAAAACAGGAA+AGG - chr5_4:66058791-66058810 Msa0865420:CDS 40.0%
AATCTTCGTGACTATCCCAA+AGG - chr5_4:66058833-66058852 Msa0865420:CDS 40.0%
TCGGTCCAAAATGATCCTTT+GGG + chr5_4:66058851-66058870 None:intergenic 40.0%
ATCGGTCCAAAATGATCCTT+TGG + chr5_4:66058852-66058871 None:intergenic 40.0%
TATGATCCTAATAGGAACCG+TGG - chr5_4:66058882-66058901 Msa0865420:CDS 40.0%
ATGATCCTAATAGGAACCGT+GGG - chr5_4:66058883-66058902 Msa0865420:CDS 40.0%
!! GGTTCTTGTTGGTGATACTT+GGG - chr5_4:66058905-66058924 Msa0865420:CDS 40.0%
ATAGGATGGAATGTAGGCAA+TGG - chr5_4:66058931-66058950 Msa0865420:CDS 40.0%
TAGGATGGAATGTAGGCAAT+GGG - chr5_4:66058932-66058951 Msa0865420:CDS 40.0%
CAAACTTCTGGTCAAATGAC+TGG + chr5_4:66059124-66059143 None:intergenic 40.0%
GTCTCACTCAATGTACTTAC+TGG + chr5_4:66059521-66059540 None:intergenic 40.0%
GTACATTGAGTGAGACCTAA+TGG - chr5_4:66059525-66059544 Msa0865420:intron 40.0%
TCTGCAGGTATTTGTTTGTG+AGG - chr5_4:66059610-66059629 Msa0865420:intron 40.0%
! TTTTCCTATCTGGGTGTTTG+TGG - chr5_4:66059688-66059707 Msa0865420:CDS 40.0%
ACTCCTTAACAGTAGGTAGT+GGG + chr5_4:66059804-66059823 None:intergenic 40.0%
AACTCCTTAACAGTAGGTAG+TGG + chr5_4:66059805-66059824 None:intergenic 40.0%
ACCTACTGTTAAGGAGTTCA+AGG - chr5_4:66059807-66059826 Msa0865420:CDS 40.0%
CCTACTGTTAAGGAGTTCAA+GGG - chr5_4:66059808-66059827 Msa0865420:CDS 40.0%
CTTACATCAAAGTCCCATGA+TGG + chr5_4:66059865-66059884 None:intergenic 40.0%
CAGAAATGTAATACGCAGCA+CGG + chr5_4:66059946-66059965 None:intergenic 40.0%
ACTATGGTACAGCAAAGTTG+GGG + chr5_4:66060072-66060091 None:intergenic 40.0%
GTCTACATTTCAGGAGGAAA+AGG - chr5_4:66060121-66060140 Msa0865420:CDS 40.0%
!! TTCATCGGCTTCTTACTTTG+TGG + chr5_4:66060173-66060192 None:intergenic 40.0%
TAAGAAGCCGATGAACATTG+TGG - chr5_4:66060178-66060197 Msa0865420:intron 40.0%
!! AAGGACGGCTTTATAGCTTT+TGG + chr5_4:66060239-66060258 None:intergenic 40.0%
AAAGCCGTCCTTCAAAATCA+AGG - chr5_4:66060247-66060266 Msa0865420:intron 40.0%
CGTCCTTCAAAATCAAGGAT+AGG - chr5_4:66060252-66060271 Msa0865420:intron 40.0%
!! GATATAGCTTTGGCCAGAAA+AGG + chr5_4:66060517-66060536 None:intergenic 40.0%
! TTTCTGGCCAAAGCTATATC+AGG - chr5_4:66060517-66060536 Msa0865420:CDS 40.0%
CCAAAGCTATATCAGGAACA+GGG - chr5_4:66060524-66060543 Msa0865420:CDS 40.0%
TGAGTATCTTCAGAATCCAC+AGG - chr5_4:66060620-66060639 Msa0865420:intron 40.0%
ACAGGTTAACAGGGAAATGA+TGG - chr5_4:66061293-66061312 Msa0865420:CDS 40.0%
CAGGTTAACAGGGAAATGAT+GGG - chr5_4:66061294-66061313 Msa0865420:CDS 40.0%
TGAACAACAGGAAGAACAGA+TGG - chr5_4:66061344-66061363 Msa0865420:CDS 40.0%
GAGTGAAGAAAATGACAAGC+CGG - chr5_4:66061395-66061414 Msa0865420:CDS 40.0%
!!! ATCAGAGGATTTTGAGACCT+CGG + chr5_4:66061430-66061449 None:intergenic 40.0%
!!! GACTTTTTCACTCGAATCAG+AGG + chr5_4:66061445-66061464 None:intergenic 40.0%
TGATTCGAGTGAAAAAGTCG+TGG - chr5_4:66061446-66061465 Msa0865420:CDS 40.0%
TCACCTTTCTTCTTCTTCTG+TGG + chr5_4:66061501-66061520 None:intergenic 40.0%
TGTGGAGGAACAAATTGATG+AGG - chr5_4:66061542-66061561 Msa0865420:CDS 40.0%
! AAACAGTGGCTTGCAATTAG+AGG - chr5_4:66061580-66061599 Msa0865420:CDS 40.0%
!! TTGTTGGTTCAGACTCCATG+TGG - chr5_4:66058528-66058547 Msa0865420:three_prime_UTR 45.0%
!! TGTTGGTTCAGACTCCATGT+GGG - chr5_4:66058529-66058548 Msa0865420:three_prime_UTR 45.0%
! TTTGAGAAATGGCTTGGGCA+AGG - chr5_4:66058573-66058592 Msa0865420:three_prime_UTR 45.0%
! AACGAACTTGCTCAAACTGC+AGG - chr5_4:66058598-66058617 Msa0865420:three_prime_UTR 45.0%
!! CTTGGATTAGTCGCCATCTT+CGG + chr5_4:66058636-66058655 None:intergenic 45.0%
TCCAAGAATCAACGCACAGT+TGG - chr5_4:66058650-66058669 Msa0865420:three_prime_UTR 45.0%
GAAAGGCTAATGCTTGCAGT+GGG - chr5_4:66058808-66058827 Msa0865420:CDS 45.0%
GGATCATACTCAGCAAGGAT+CGG + chr5_4:66058870-66058889 None:intergenic 45.0%
TGATCCTAATAGGAACCGTG+GGG - chr5_4:66058884-66058903 Msa0865420:CDS 45.0%
TATCACCAACAAGAACCCCA+CGG + chr5_4:66058902-66058921 None:intergenic 45.0%
!! GGGTTCTTGTTGGTGATACT+TGG - chr5_4:66058904-66058923 Msa0865420:CDS 45.0%
!! TCTTGTTGGTGATACTTGGG+AGG - chr5_4:66058908-66058927 Msa0865420:CDS 45.0%
! TTGGTGATACTTGGGAGGAT+AGG - chr5_4:66058913-66058932 Msa0865420:CDS 45.0%
TGATACTTGGGAGGATAGGA+TGG - chr5_4:66058917-66058936 Msa0865420:CDS 45.0%
AGGATGGAATGTAGGCAATG+GGG - chr5_4:66058933-66058952 Msa0865420:CDS 45.0%
! ATTGCTGGTCAGAGTACCTA+CGG - chr5_4:66058981-66059000 Msa0865420:CDS 45.0%
TATGTAGACGACGAGGATCA+TGG - chr5_4:66059032-66059051 Msa0865420:intron 45.0%
ATGTAGACGACGAGGATCAT+GGG - chr5_4:66059033-66059052 Msa0865420:intron 45.0%
! CACGAACAGGATAGCCTTTT+CGG + chr5_4:66059178-66059197 None:intergenic 45.0%
! GCTATCCTGTTCGTGTTGTT+AGG - chr5_4:66059183-66059202 Msa0865420:intron 45.0%
ACGAACCTAACAACACGAAC+AGG + chr5_4:66059191-66059210 None:intergenic 45.0%
! TATTTGGTTCAGGTCCCACA+AGG - chr5_4:66059369-66059388 Msa0865420:intron 45.0%
AGAGGAACGTTTCTCCTTGT+GGG + chr5_4:66059386-66059405 None:intergenic 45.0%
AAGAGGAACGTTTCTCCTTG+TGG + chr5_4:66059387-66059406 None:intergenic 45.0%
GAAACGTTCCTCTTATGCAC+CGG - chr5_4:66059393-66059412 Msa0865420:intron 45.0%
AAGCAGGAGTGAGATACGAT+GGG - chr5_4:66059416-66059435 Msa0865420:intron 45.0%
GAGAAATGTTGGCGCAAAGT+TGG - chr5_4:66059451-66059470 Msa0865420:intron 45.0%
CCCTTGAACTCCTTAACAGT+AGG + chr5_4:66059811-66059830 None:intergenic 45.0%
AATGTAATACGCAGCACGGA+AGG + chr5_4:66059942-66059961 None:intergenic 45.0%
TCGGCTTCTTACTTTGTGGT+GGG + chr5_4:66060169-66060188 None:intergenic 45.0%
! ATCGGCTTCTTACTTTGTGG+TGG + chr5_4:66060170-66060189 None:intergenic 45.0%
TGGTTGCAATATCTGTCGCA+AGG - chr5_4:66060428-66060447 Msa0865420:intron 45.0%
CAATATCTGTCGCAAGGTGT+TGG - chr5_4:66060434-66060453 Msa0865420:intron 45.0%
AGCACAAGGTGTAGTAAGAG+GGG + chr5_4:66060463-66060482 None:intergenic 45.0%
GAGCACAAGGTGTAGTAAGA+GGG + chr5_4:66060464-66060483 None:intergenic 45.0%
TGAGCACAAGGTGTAGTAAG+AGG + chr5_4:66060465-66060484 None:intergenic 45.0%
TTGCAGAAGTTGTGAGCACA+AGG + chr5_4:66060477-66060496 None:intergenic 45.0%
TGTGCTCACAACTTCTGCAA+AGG - chr5_4:66060477-66060496 Msa0865420:CDS 45.0%
GCCAAAGCTATATCAGGAAC+AGG - chr5_4:66060523-66060542 Msa0865420:CDS 45.0%
CCCTGTTCCTGATATAGCTT+TGG + chr5_4:66060527-66060546 None:intergenic 45.0%
AATACGTGCAGTAGTACCTG+TGG + chr5_4:66060639-66060658 None:intergenic 45.0%
ACAACAGGAAGAACAGATGG+AGG - chr5_4:66061347-66061366 Msa0865420:CDS 45.0%
GAACAGATGGAGGAGAATTC+TGG - chr5_4:66061357-66061376 Msa0865420:CDS 45.0%
TTCGAGTGAAAAAGTCGTGG+AGG - chr5_4:66061449-66061468 Msa0865420:CDS 45.0%
AGTCGTGGAGGAAATTAACG+AGG - chr5_4:66061461-66061480 Msa0865420:CDS 45.0%
CCTTTCTTCTTCTTCTGTGG+AGG + chr5_4:66061498-66061517 None:intergenic 45.0%
CCTCCACAGAAGAAGAAGAA+AGG - chr5_4:66061495-66061514 Msa0865420:CDS 45.0%
!! GAAGAAAGGTGATGATGGCA+AGG - chr5_4:66061509-66061528 Msa0865420:CDS 45.0%
GAGGAACAAATTGATGAGGC+TGG - chr5_4:66061546-66061565 Msa0865420:CDS 45.0%
ACAAATTGATGAGGCTGGAG+TGG - chr5_4:66061551-66061570 Msa0865420:CDS 45.0%
TGGAGTGGAAAGCAAAACAG+TGG - chr5_4:66061566-66061585 Msa0865420:CDS 45.0%
GCTTGCAATTAGAGGTGGAT+CGG - chr5_4:66061588-66061607 Msa0865420:CDS 45.0%
!!! AATTATTAAGTTTAAATTTT+GGG - chr5_4:66060015-66060034 Msa0865420:intron 5.0%
AGGCAGAAATTGTGCCCACA+TGG + chr5_4:66058546-66058565 None:intergenic 50.0%
GACTGCAATTCCACCGAAGA+TGG - chr5_4:66058620-66058639 Msa0865420:three_prime_UTR 50.0%
!! GCCAACTGTGCGTTGATTCT+TGG + chr5_4:66058654-66058673 None:intergenic 50.0%
TCAGTGGTGTAGCATGTGTC+AGG + chr5_4:66058771-66058790 None:intergenic 50.0%
GGAAAGGCTAATGCTTGCAG+TGG - chr5_4:66058807-66058826 Msa0865420:CDS 50.0%
AGAACCCCACGGTTCCTATT+AGG + chr5_4:66058891-66058910 None:intergenic 50.0%
GGGAGGATAGGATGGAATGT+AGG - chr5_4:66058925-66058944 Msa0865420:CDS 50.0%
! GCTCATTTTCCCCATGTTGC+TGG - chr5_4:66058957-66058976 Msa0865420:CDS 50.0%
ACCAGCAATGCCAGCAACAT+GGG + chr5_4:66058970-66058989 None:intergenic 50.0%
! TTGCTGGTCAGAGTACCTAC+GGG - chr5_4:66058982-66059001 Msa0865420:CDS 50.0%
TGTAGACGACGAGGATCATG+GGG - chr5_4:66059034-66059053 Msa0865420:intron 50.0%
TGGTTCCTTTACACCGGAAG+CGG - chr5_4:66059059-66059078 Msa0865420:intron 50.0%
TTGCGAACCAGTTGCCGAAA+AGG - chr5_4:66059161-66059180 Msa0865420:intron 50.0%
! AGGATAGCCTTTTCGGCAAC+TGG + chr5_4:66059171-66059190 None:intergenic 50.0%
TCGTATCTCACTCCTGCTTC+CGG + chr5_4:66059415-66059434 None:intergenic 50.0%
GAAGCAGGAGTGAGATACGA+TGG - chr5_4:66059415-66059434 Msa0865420:intron 50.0%
AGCAGGAGTGAGATACGATG+GGG - chr5_4:66059417-66059436 Msa0865420:intron 50.0%
GATAGGGTCATAAGGTCTGC+AGG - chr5_4:66059595-66059614 Msa0865420:intron 50.0%
ATCAACCTTGTCCATGGAGC+TGG + chr5_4:66059648-66059667 None:intergenic 50.0%
GCAACCACAAACACCCAGAT+AGG + chr5_4:66059695-66059714 None:intergenic 50.0%
!! TTAACAGTAGGTAGTGGGCG+AGG + chr5_4:66059799-66059818 None:intergenic 50.0%
TCGCCCACTACCTACTGTTA+AGG - chr5_4:66059798-66059817 Msa0865420:CDS 50.0%
TTCAGGAGGAAAAGGGCTGT+TGG - chr5_4:66060129-66060148 Msa0865420:CDS 50.0%
GGCTTCTTACTTTGTGGTGG+GGG + chr5_4:66060167-66060186 None:intergenic 50.0%
CGGCTTCTTACTTTGTGGTG+GGG + chr5_4:66060168-66060187 None:intergenic 50.0%
CAACTTCTGCAAAGGCTGCT+TGG - chr5_4:66060485-66060504 Msa0865420:CDS 50.0%
TTCTGCAAAGGCTGCTTGGA+GGG - chr5_4:66060489-66060508 Msa0865420:CDS 50.0%
CTCAAAGTGGACGCAGTTTG+CGG - chr5_4:66060550-66060569 Msa0865420:intron 50.0%
GCTATGTCAGTTGCACAGGT+AGG + chr5_4:66060600-66060619 None:intergenic 50.0%
CTCAGCTATGTCAGTTGCAC+AGG + chr5_4:66060604-66060623 None:intergenic 50.0%
GATAGAATCACTCCAGCGAC+AGG - chr5_4:66061320-66061339 Msa0865420:CDS 50.0%
! CAGTGGCTTGCAATTAGAGG+TGG - chr5_4:66061583-66061602 Msa0865420:CDS 50.0%
!! GGATTAGTCGCCATCTTCGG+TGG + chr5_4:66058633-66058652 None:intergenic 55.0%
GTTGGCGATTGCGATCCGTA+TGG - chr5_4:66058668-66058687 Msa0865420:three_prime_UTR 55.0%
TCCGTATGGCCAAGCTAGCT+AGG - chr5_4:66058682-66058701 Msa0865420:three_prime_UTR 55.0%
! CCCTAGCTAGCTTGGCCATA+CGG + chr5_4:66058686-66058705 None:intergenic 55.0%
CCGTATGGCCAAGCTAGCTA+GGG - chr5_4:66058683-66058702 Msa0865420:three_prime_UTR 55.0%
AGGAACCGTGGGGTTCTTGT+TGG - chr5_4:66058894-66058913 Msa0865420:CDS 55.0%
CCAGCAATGCCAGCAACATG+GGG + chr5_4:66058969-66058988 None:intergenic 55.0%
GACCAGCAATGCCAGCAACA+TGG + chr5_4:66058971-66058990 None:intergenic 55.0%
! TGCTGGTCAGAGTACCTACG+GGG - chr5_4:66058983-66059002 Msa0865420:CDS 55.0%
GGCTCAATCTGTCGCTCTCT+CGG - chr5_4:66059004-66059023 Msa0865420:CDS 55.0%
GCTCAATCTGTCGCTCTCTC+GGG - chr5_4:66059005-66059024 Msa0865420:CDS 55.0%
GGGTGGTTATGTAGACGACG+AGG - chr5_4:66059025-66059044 Msa0865420:intron 55.0%
GGGGAGTGGTTCCTTTACAC+CGG - chr5_4:66059053-66059072 Msa0865420:intron 55.0%
TTCCTTTACACCGGAAGCGG+TGG - chr5_4:66059062-66059081 Msa0865420:intron 55.0%
TTCCACCGCTTCCGGTGTAA+AGG + chr5_4:66059067-66059086 None:intergenic 55.0%
TTTACACCGGAAGCGGTGGA+AGG - chr5_4:66059066-66059085 Msa0865420:intron 55.0%
TTACACCGGAAGCGGTGGAA+GGG - chr5_4:66059067-66059086 Msa0865420:intron 55.0%
TCCTCTTATGCACCGGAAGC+AGG - chr5_4:66059400-66059419 Msa0865420:intron 55.0%
TCCTGCTTCCGGTGCATAAG+AGG + chr5_4:66059404-66059423 None:intergenic 55.0%
GTGACAATGAGCCAGCTCCA+TGG - chr5_4:66059634-66059653 Msa0865420:intron 55.0%
ATGAGCCAGCTCCATGGACA+AGG - chr5_4:66059640-66059659 Msa0865420:intron 55.0%
! AGGAAAAGGGCTGTTGGCTG+TGG - chr5_4:66060135-66060154 Msa0865420:CDS 55.0%
CTTCTGCAAAGGCTGCTTGG+AGG - chr5_4:66060488-66060507 Msa0865420:CDS 55.0%
!!! TGCTTGGAGGGTGCCTTTTC+TGG - chr5_4:66060501-66060520 Msa0865420:CDS 55.0%
AGGAACAGGGCGACTCAAAG+TGG - chr5_4:66060537-66060556 Msa0865420:intron 55.0%
GAGACCTCGGTCTCTTCATC+CGG + chr5_4:66061417-66061436 None:intergenic 55.0%
!! AGGTGATGATGGCAAGGCTG+TGG - chr5_4:66061515-66061534 Msa0865420:CDS 55.0%
TGGCAAGGCTGTGGTGAATG+TGG - chr5_4:66061524-66061543 Msa0865420:CDS 55.0%
CAAGGCTGTGGTGAATGTGG+AGG - chr5_4:66061527-66061546 Msa0865420:CDS 55.0%
GCCAAGCTAGCTAGGGCAGA+GGG - chr5_4:66058690-66058709 Msa0865420:three_prime_UTR 60.0%
ACCCTCTGCCCTAGCTAGCT+TGG + chr5_4:66058694-66058713 None:intergenic 60.0%
! CTAGCTAGGGCAGAGGGTGT+TGG - chr5_4:66058696-66058715 Msa0865420:three_prime_UTR 60.0%
CCCCATGTTGCTGGCATTGC+TGG - chr5_4:66058966-66058985 Msa0865420:CDS 60.0%
AGCGACAGATTGAGCCCCGT+AGG + chr5_4:66059000-66059019 None:intergenic 60.0%
CAATCTGTCGCTCTCTCGGG+TGG - chr5_4:66059008-66059027 Msa0865420:CDS 60.0%
ACGACGAGGATCATGGGGAG+TGG - chr5_4:66059039-66059058 Msa0865420:intron 60.0%
GAGATCCCTTCCACCGCTTC+CGG + chr5_4:66059075-66059094 None:intergenic 60.0%
AGCGGTGGAAGGGATCTCAG+TGG - chr5_4:66059077-66059096 Msa0865420:intron 60.0%
GCGGTGGAAGGGATCTCAGT+GGG - chr5_4:66059078-66059097 Msa0865420:intron 60.0%
!! CAGTAGGTAGTGGGCGAGGA+CGG + chr5_4:66059795-66059814 None:intergenic 60.0%
CCTGTTGTTCAGCCTGTCGC+TGG + chr5_4:66061335-66061354 None:intergenic 60.0%
CCAGCGACAGGCTGAACAAC+AGG - chr5_4:66061332-66061351 Msa0865420:CDS 60.0%
CAAGCCGGATGAAGAGACCG+AGG - chr5_4:66061410-66061429 Msa0865420:CDS 60.0%
GGCCAAGCTAGCTAGGGCAG+AGG - chr5_4:66058689-66058708 Msa0865420:three_prime_UTR 65.0%
!! GCTAGGGCAGAGGGTGTTGG+TGG - chr5_4:66058699-66058718 Msa0865420:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 66058451 66061876 66058451 ID=Msa0865420;Name=Msa0865420
chr5_4 mRNA 66058451 66061876 66058451 ID=Msa0865420-mRNA-1;Parent=Msa0865420;Name=Msa0865420-mRNA-1;_AED=0.04;_eAED=0.04;_QI=188|1|1|1|1|1|7|277|500
chr5_4 exon 66058451 66059030 66058451 ID=Msa0865420-mRNA-1:exon:20893;Parent=Msa0865420-mRNA-1
chr5_4 exon 66059686 66059903 66059686 ID=Msa0865420-mRNA-1:exon:20892;Parent=Msa0865420-mRNA-1
chr5_4 exon 66060043 66060193 66060043 ID=Msa0865420-mRNA-1:exon:20891;Parent=Msa0865420-mRNA-1
chr5_4 exon 66060448 66060550 66060448 ID=Msa0865420-mRNA-1:exon:20890;Parent=Msa0865420-mRNA-1
chr5_4 exon 66060666 66060727 66060666 ID=Msa0865420-mRNA-1:exon:20889;Parent=Msa0865420-mRNA-1
chr5_4 exon 66060847 66060946 66060847 ID=Msa0865420-mRNA-1:exon:20888;Parent=Msa0865420-mRNA-1
chr5_4 exon 66061123 66061876 66061123 ID=Msa0865420-mRNA-1:exon:20887;Parent=Msa0865420-mRNA-1
chr5_4 five_prime_UTR 66061689 66061876 66061689 ID=Msa0865420-mRNA-1:five_prime_utr;Parent=Msa0865420-mRNA-1
chr5_4 CDS 66061123 66061688 66061123 ID=Msa0865420-mRNA-1:cds;Parent=Msa0865420-mRNA-1
chr5_4 CDS 66060847 66060946 66060847 ID=Msa0865420-mRNA-1:cds;Parent=Msa0865420-mRNA-1
chr5_4 CDS 66060666 66060727 66060666 ID=Msa0865420-mRNA-1:cds;Parent=Msa0865420-mRNA-1
chr5_4 CDS 66060448 66060550 66060448 ID=Msa0865420-mRNA-1:cds;Parent=Msa0865420-mRNA-1
chr5_4 CDS 66060043 66060193 66060043 ID=Msa0865420-mRNA-1:cds;Parent=Msa0865420-mRNA-1
chr5_4 CDS 66059686 66059903 66059686 ID=Msa0865420-mRNA-1:cds;Parent=Msa0865420-mRNA-1
chr5_4 CDS 66058728 66059030 66058728 ID=Msa0865420-mRNA-1:cds;Parent=Msa0865420-mRNA-1
chr5_4 three_prime_UTR 66058451 66058727 66058451 ID=Msa0865420-mRNA-1:three_prime_utr;Parent=Msa0865420-mRNA-1
Gene Sequence

>Msa0865420

ATGGCGACTAATCCAAGAATCAACGCACAGTTGGCGATTGCGATCCGTATGGCCAAGCTAGCTAGGGCAGAGGGTGTTGGTGGAAGCACTGCTCCAAAAAATTATCAAGTTGTTCTCAATGATGAGCGTCCTGACACATGCTACACCACTGAGAGAGCAAAGAAAACAGGAAAGGCTAATGCTTGCAGTGGGAAAATCTTCGTGACTATCCCAAAGGATCATTTTGGACCGATCCTTGCTGAGTATGATCCTAATAGGAACCGTGGGGTTCTTGTTGGTGATACTTGGGAGGATAGGATGGAATGTAGGCAATGGGGAGCTCATTTTCCCCATGTTGCTGGCATTGCTGGTCAGAGTACCTACGGGGCTCAATCTGTCGCTCTCTCGGGTGGTTATGTAGACGACGAGGATCATGGGGAGTGGTTCCTTTACACCGGAAGCGGTGGAAGGGATCTCAGTGGGAATAAACGTACGAACAAAAACCAGTCATTTGACCAGAAGTTTGAAAATATGAATGAGGCTTTGCGAACCAGTTGCCGAAAAGGCTATCCTGTTCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCCTCTTATGCACCGGAAGCAGGAGTGAGATACGATGGGGTATACAGAATTGAGAAATGTTGGCGCAAAGTTGGAATACAAGGTCATAAGGTCTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGATTTAACTGGAGACCGTCCTCGCCCACTACCTACTGTTAAGGAGTTCAAGGGTGCCGTTGATATTACTGAAAGAAAGGATGATCCATCATGGGACTTTGATGAGGAAAAGGGCTGTTGGCTGTGGAAGAAGCCCCCACCACAAAGTAAGAAGCCGATGAACATTGTGGATCCTTTTGATCCAACAAAAATTCAAATTGTCAGGCCAAAAGCTATAAAGCCGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATCTGTCGCAAGGTGTTGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGGCTGCTTGGAGGGTGCCTTTTCTGGCCAAAGCTATATCAGGAACAGGGCGACTCAAAGTGGACGCAGTTTGCGGACGCAGAAGAACATTATGAAATGTCCTACCTGTGCAACTGACATAGCTGAGTATCTTCAGAATCCACAGGTTAACAGGGAAATGATGGGTGTGATAGAATCACTCCAGCGACAGGCTGAACAACAGGAAGAACAGATGGAGGAGAATTCTGGAGAATCAAGTGCTAAGAGTGAAGAAAATGACAAGCCGGATGAAGAGACCGAGGTCTCAAAATCCTCTGATTCGAGTGAAAAAGTCGTGGAGGAAATTAACGAGGATGATGTGAATCCTCCACAGAAGAAGAAGAAAGGTGATGATGGCAAGGCTGTGGTGAATGTGGAGGAACAAATTGATGAGGCTGGAGTGGAAAGCAAAACAGTGGCTTGCAATTAG

Protein sequence

>Msa0865420

MATNPRINAQLAIAIRMAKLARAEGVGGSTAPKNYQVVLNDERPDTCYTTERAKKTGKANACSGKIFVTIPKDHFGPILAEYDPNRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTYGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQKFENMNEALRTSCRKGYPVRVVRSHKEKRSSYAPEAGVRYDGVYRIEKCWRKVGIQGHKVCRYLFVRCDNEPAPWTSDLTGDRPRPLPTVKEFKGAVDITERKDDPSWDFDEEKGCWLWKKPPPQSKKPMNIVDPFDPTKIQIVRPKAIKPSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKGCLEGAFSGQSYIRNRATQSGRSLRTQKNIMKCPTCATDIAEYLQNPQVNREMMGVIESLQRQAEQQEEQMEENSGESSAKSEENDKPDEETEVSKSSDSSEKVVEEINEDDVNPPQKKKKGDDGKAVVNVEEQIDEAGVESKTVACN*