AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0675080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0675080 MtrunA17_Chr4g0018391 92.394 355 17 2 1 354 1 346 0.0 686
Msa0675080 MtrunA17_Chr4g0056541 60.106 376 107 12 1 352 1 357 2.70e-144 412
Msa0675080 MtrunA17_Chr5g0398971 62.883 326 82 13 1 315 1 298 4.36e-135 389
Msa0675080 MtrunA17_Chr5g0405211 57.453 322 93 8 5 315 6 294 1.75e-107 318
Msa0675080 MtrunA17_Chr8g0372121 50.625 320 94 5 5 316 4 267 1.21e-103 307
Msa0675080 MtrunA17_Chr1g0200561 78.205 156 34 0 1 156 13 168 8.38e-91 276
Msa0675080 MtrunA17_Chr8g0346001 46.724 351 141 9 1 319 9 345 5.50e-90 276
Msa0675080 MtrunA17_Chr2g0309331 46.178 314 131 9 7 311 10 294 8.54e-85 260
Msa0675080 MtrunA17_Chr4g0017921 64.865 185 59 3 7 191 8 186 2.88e-81 251
Msa0675080 MtrunA17_Chr6g0484441 50.262 191 89 2 7 194 5 192 1.37e-61 200
Msa0675080 MtrunA17_Chr2g0309891 55.484 155 65 2 7 158 6 159 4.18e-60 197
Msa0675080 MtrunA17_Chr6g0481091 55.921 152 64 2 7 156 6 156 1.16e-59 192
Msa0675080 MtrunA17_Chr3g0091921 58.228 158 57 3 7 159 16 169 3.74e-59 193
Msa0675080 MtrunA17_Chr4g0060931 57.792 154 58 3 7 156 17 167 1.55e-58 193
Msa0675080 MtrunA17_Chr3g0109821 54.902 153 65 2 7 156 6 157 7.36e-58 198
Msa0675080 MtrunA17_Chr2g0316971 55.280 161 63 3 5 159 21 178 1.49e-57 191
Msa0675080 MtrunA17_Chr6g0453451 39.677 310 147 11 7 299 20 306 2.17e-57 189
Msa0675080 MtrunA17_Chr1g0183741 46.766 201 88 5 7 204 10 194 7.26e-57 186
Msa0675080 MtrunA17_Chr1g0147421 56.863 153 60 3 7 156 27 176 2.16e-56 187
Msa0675080 MtrunA17_Chr8g0361731 35.821 335 164 10 9 297 16 345 2.70e-56 188
Msa0675080 MtrunA17_Chr2g0312321 44.348 230 115 6 5 227 9 232 3.02e-56 186
Msa0675080 MtrunA17_Chr5g0433781 54.605 152 66 3 7 156 6 156 8.36e-55 190
Msa0675080 MtrunA17_Chr7g0217721 54.545 165 55 3 10 157 22 183 8.54e-55 183
Msa0675080 MtrunA17_Chr7g0253011 53.797 158 62 3 7 156 17 171 8.64e-55 184
Msa0675080 MtrunA17_Chr4g0042561 52.201 159 67 2 5 157 7 162 9.65e-55 181
Msa0675080 MtrunA17_Chr3g0139331 53.289 152 66 2 7 156 11 159 1.18e-54 182
Msa0675080 MtrunA17_Chr7g0252971 49.102 167 67 3 5 156 6 169 2.50e-54 181
Msa0675080 MtrunA17_Chr5g0417791 50.625 160 70 2 7 160 3 159 7.03e-54 178
Msa0675080 MtrunA17_Chr7g0261411 53.289 152 64 3 5 154 8 154 1.23e-53 178
Msa0675080 MtrunA17_Chr5g0417001 47.674 172 75 3 7 166 14 182 1.38e-53 181
Msa0675080 MtrunA17_Chr7g0214071 54.902 153 61 3 7 157 15 161 4.59e-53 176
Msa0675080 MtrunA17_Chr5g0428991 54.140 157 69 3 3 157 21 176 2.98e-52 182
Msa0675080 MtrunA17_Chr6g0453131 47.619 168 73 4 1 156 9 173 6.36e-52 177
Msa0675080 MtrunA17_Chr3g0130731 47.647 170 78 4 7 171 7 170 8.14e-52 174
Msa0675080 MtrunA17_Chr5g0400461 49.686 159 71 3 5 156 4 160 8.97e-52 175
Msa0675080 MtrunA17_Chr7g0217711 61.417 127 46 1 10 136 22 145 1.50e-51 169
Msa0675080 MtrunA17_Chr3g0128111 53.020 149 67 2 10 156 45 192 2.19e-51 171
Msa0675080 MtrunA17_Chr2g0318101 36.704 267 127 7 6 257 14 253 4.32e-51 173
Msa0675080 MtrunA17_Chr8g0384721 49.682 157 69 3 7 157 7 159 5.98e-51 171
Msa0675080 MtrunA17_Chr4g0047841 42.647 204 84 5 6 182 14 211 6.57e-51 172
Msa0675080 MtrunA17_Chr2g0318081 50.000 152 71 2 7 156 16 164 1.36e-50 172
Msa0675080 MtrunA17_Chr4g0054791 49.133 173 77 4 5 167 4 175 2.15e-50 171
Msa0675080 MtrunA17_Chr3g0124761 48.171 164 76 3 1 159 1 160 2.83e-50 169
Msa0675080 MtrunA17_Chr7g0263931 40.417 240 118 6 6 225 10 244 3.70e-50 170
Msa0675080 MtrunA17_Chr6g0461661 49.359 156 70 3 7 156 18 170 4.81e-50 171
Msa0675080 MtrunA17_Chr3g0128151 51.923 156 72 3 3 156 18 172 1.04e-49 175
Msa0675080 MtrunA17_Chr3g0130101 50.993 151 69 3 9 156 9 157 1.60e-49 169
Msa0675080 MtrunA17_Chr3g0144271 57.463 134 51 3 7 137 23 153 2.95e-49 171
Msa0675080 MtrunA17_Chr2g0326361 49.123 171 70 5 8 168 15 178 7.54e-49 167
Msa0675080 MtrunA17_Chr2g0311651 45.665 173 74 4 7 161 21 191 1.18e-48 166
Msa0675080 MtrunA17_Chr2g0311661 46.199 171 72 4 7 159 20 188 1.37e-48 165
Msa0675080 MtrunA17_Chr8g0359921 46.835 158 77 2 7 160 14 168 2.97e-48 165
Msa0675080 MtrunA17_Chr1g0197351 51.266 158 64 4 9 156 44 198 3.04e-48 169
Msa0675080 MtrunA17_Chr3g0092671 50.000 150 72 3 9 156 7 155 5.25e-47 167
Msa0675080 MtrunA17_Chr5g0442771 42.778 180 81 4 7 167 18 194 1.10e-46 160
Msa0675080 MtrunA17_Chr4g0076731 47.682 151 75 2 7 156 54 201 2.56e-46 163
Msa0675080 MtrunA17_Chr1g0201021 48.667 150 74 2 9 156 21 169 3.86e-46 165
Msa0675080 MtrunA17_Chr1g0197361 50.331 151 70 4 9 156 10 158 1.39e-45 164
Msa0675080 MtrunA17_Chr8g0364791 42.697 178 92 5 9 179 8 182 4.74e-45 160
Msa0675080 MtrunA17_Chr8g0384201 42.458 179 93 5 9 180 8 183 3.10e-44 159
Msa0675080 MtrunA17_Chr4g0038751 44.586 157 78 3 9 162 17 167 3.61e-44 154
Msa0675080 MtrunA17_Chr8g0385991 47.205 161 71 4 2 153 9 164 4.49e-42 146
Msa0675080 MtrunA17_Chr3g0131911 42.262 168 80 4 2 157 9 171 4.71e-39 139
Msa0675080 MtrunA17_Chr4g0026141 44.304 158 74 6 8 154 6 160 7.14e-37 134
Msa0675080 MtrunA17_Chr8g0345671 46.203 158 74 6 2 153 3 155 4.02e-36 135
Msa0675080 MtrunA17_Chr3g0113001 50.400 125 55 3 51 168 4 128 1.04e-35 131
Msa0675080 MtrunA17_Chr8g0345691 45.455 154 76 5 3 153 8 156 2.61e-35 133
Msa0675080 MtrunA17_Chr7g0266701 35.111 225 115 9 7 202 4 226 4.22e-34 126
Msa0675080 MtrunA17_Chr2g0321631 41.509 159 78 6 8 154 5 160 9.76e-34 125
Msa0675080 MtrunA17_Chr2g0321741 44.882 127 63 3 27 153 12 131 1.16e-31 122
Msa0675080 MtrunA17_Chr4g0050701 38.125 160 78 4 7 156 11 159 4.68e-31 116
Msa0675080 MtrunA17_Chr3g0113031 51.923 104 40 2 73 168 3 104 1.05e-29 115
Msa0675080 MtrunA17_Chr8g0345711 43.077 130 69 4 7 133 12 139 1.43e-27 106
Msa0675080 MtrunA17_Chr8g0345701 39.333 150 70 6 1 133 1 146 1.37e-24 98.6
Msa0675080 MtrunA17_Chr8g0345731 40.152 132 73 4 7 133 24 154 1.07e-23 96.3
Msa0675080 MtrunA17_Chr8g0384351 36.416 173 80 8 7 177 10 154 1.21e-22 93.6
Msa0675080 MtrunA17_Chr7g0243371 46.809 94 45 3 51 140 4 96 5.92e-22 89.7
Msa0675080 MtrunA17_Chr8g0345721 35.802 162 72 5 10 140 38 198 5.07e-21 90.1
Msa0675080 MtrunA17_Chr8g0345741 42.017 119 64 4 18 133 2 118 6.31e-20 85.5
Msa0675080 MtrunA17_Chr7g0251651 28.931 159 108 4 7 164 18 172 1.22e-15 74.7
Msa0675080 MtrunA17_Chr3g0130321 29.878 164 90 7 7 155 7 160 4.38e-14 70.5
Msa0675080 MtrunA17_Chr1g0168571 31.126 151 95 6 15 159 13 160 2.69e-13 70.1
Msa0675080 MtrunA17_Chr7g0251661 30.469 128 84 4 7 133 10 133 3.81e-13 66.6
Msa0675080 MtrunA17_Chr4g0040541 29.480 173 95 7 1 154 42 206 2.96e-12 66.2
Msa0675080 MtrunA17_Chr7g0274971 28.659 164 103 7 13 170 11 166 5.16e-12 64.7
Msa0675080 MtrunA17_Chr7g0251671 28.788 132 89 4 7 137 10 137 1.29e-11 62.4
Msa0675080 MtrunA17_Chr2g0282871 28.070 171 99 7 1 154 47 210 1.00e-10 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0675080 AT1G12260.1 56.533 398 122 13 1 354 1 391 1.13e-137 397
Msa0675080 AT1G12260.2 56.284 366 120 11 1 354 1 338 1.05e-128 372
Msa0675080 AT1G62700.1 56.319 364 110 13 1 332 1 347 6.32e-127 370
Msa0675080 AT1G62700.2 56.319 364 110 13 1 332 1 347 6.32e-127 370
Msa0675080 AT4G36160.1 53.235 340 134 7 7 334 10 336 1.49e-111 330
Msa0675080 AT4G36160.3 53.235 340 134 7 7 334 10 336 1.49e-111 330
Msa0675080 AT4G36160.2 53.235 340 134 7 7 334 14 340 1.62e-111 330
Msa0675080 AT2G18060.3 55.224 335 111 12 7 329 9 316 5.10e-108 320
Msa0675080 AT2G18060.1 55.224 335 111 12 7 329 9 316 5.10e-108 320
Msa0675080 AT5G62380.2 48.997 349 122 9 1 327 1 315 3.49e-105 313
Msa0675080 AT5G62380.1 48.997 349 122 9 1 327 1 315 3.49e-105 313
Msa0675080 AT5G66300.1 52.038 319 106 7 7 316 12 292 7.29e-102 302
Msa0675080 AT2G46770.1 47.207 358 108 13 1 332 10 312 7.46e-90 274
Msa0675080 AT1G71930.2 73.377 154 41 0 5 158 7 160 2.78e-85 261
Msa0675080 AT1G71930.1 73.377 154 41 0 5 158 7 160 2.78e-85 261
Msa0675080 AT3G61910.1 45.401 337 108 8 1 320 5 282 3.99e-84 258
Msa0675080 AT4G10350.1 44.127 315 155 7 7 319 9 304 5.49e-81 251
Msa0675080 AT1G32770.1 69.231 169 40 1 1 157 10 178 1.54e-80 250
Msa0675080 AT1G33280.1 71.523 151 42 1 7 157 8 157 9.13e-79 244
Msa0675080 AT1G79580.3 74.342 152 37 2 7 157 17 167 3.07e-78 244
Msa0675080 AT1G79580.5 74.342 152 37 2 7 157 17 167 3.07e-78 244
Msa0675080 AT1G79580.4 74.342 152 37 2 7 157 17 167 3.07e-78 244
Msa0675080 AT1G79580.2 74.342 152 37 2 7 157 17 167 3.07e-78 244
Msa0675080 AT1G79580.1 74.342 152 37 2 7 157 17 167 3.07e-78 244
Msa0675080 AT3G18400.1 57.692 156 62 2 6 160 4 156 8.46e-62 200
Msa0675080 AT3G17730.1 56.579 152 63 2 7 156 6 156 3.44e-60 194
Msa0675080 AT5G39610.1 56.548 168 64 4 7 169 20 183 5.39e-59 192
Msa0675080 AT5G61430.1 56.774 155 58 3 7 156 16 166 3.14e-58 192
Msa0675080 AT2G24430.2 56.688 157 62 3 7 160 16 169 3.27e-58 191
Msa0675080 AT2G24430.1 56.688 157 62 3 7 160 16 169 3.27e-58 191
Msa0675080 AT1G69490.1 52.439 164 69 2 5 162 7 167 5.89e-58 189
Msa0675080 AT1G65910.1 55.263 152 65 2 7 156 6 156 1.57e-57 197
Msa0675080 AT3G04060.1 38.796 299 131 11 7 294 20 277 3.06e-57 189
Msa0675080 AT5G07680.2 56.129 155 59 3 7 156 3 153 3.14e-57 189
Msa0675080 AT5G07680.1 56.129 155 59 3 7 156 17 167 6.14e-57 188
Msa0675080 AT1G76420.1 57.792 154 57 4 7 156 22 171 6.32e-57 188
Msa0675080 AT3G03200.1 54.194 155 67 2 7 158 6 159 1.28e-56 191
Msa0675080 AT5G17260.1 53.548 155 68 2 7 158 6 159 1.39e-56 191
Msa0675080 AT1G54330.1 55.696 158 68 2 7 164 6 161 1.85e-56 186
Msa0675080 AT3G12977.1 45.540 213 91 6 5 196 16 224 4.63e-56 184
Msa0675080 AT3G10490.1 54.194 155 67 2 5 156 25 178 1.35e-55 182
Msa0675080 AT3G29035.1 53.659 164 69 2 7 166 24 184 1.65e-55 184
Msa0675080 AT3G10480.1 54.902 153 65 2 7 156 27 178 1.66e-55 188
Msa0675080 AT5G46590.1 53.571 168 70 5 5 165 4 170 4.41e-55 182
Msa0675080 AT3G04070.2 50.602 166 65 3 5 156 8 170 1.12e-54 183
Msa0675080 AT3G10490.2 55.629 151 63 2 9 156 29 178 1.85e-54 185
Msa0675080 AT5G53950.1 51.786 168 72 3 6 167 16 180 3.58e-54 182
Msa0675080 AT5G18270.1 51.807 166 71 5 7 166 21 183 6.31e-54 181
Msa0675080 AT5G18270.2 51.807 166 71 5 7 166 21 183 6.88e-54 181
Msa0675080 AT4G10350.2 40.370 270 140 7 52 319 7 257 9.02e-54 179
Msa0675080 AT4G35580.1 53.846 156 69 2 3 156 5 159 9.40e-54 185
Msa0675080 AT3G10480.2 54.902 153 64 3 7 156 27 177 1.41e-53 183
Msa0675080 AT4G35580.3 53.846 156 69 2 3 156 5 159 1.48e-53 185
Msa0675080 AT4G35580.2 53.846 156 69 2 3 156 5 159 1.52e-53 185
Msa0675080 AT1G56010.2 50.303 165 71 4 5 162 17 177 1.70e-53 179
Msa0675080 AT3G15170.1 54.430 158 63 3 5 156 18 172 2.21e-53 179
Msa0675080 AT5G63790.2 46.739 184 77 4 6 172 59 238 9.85e-53 177
Msa0675080 AT5G63790.1 46.739 184 77 4 6 172 49 228 1.02e-52 177
Msa0675080 AT1G33060.2 54.605 152 66 3 7 156 24 174 2.43e-52 184
Msa0675080 AT1G33060.1 54.605 152 66 3 7 156 24 174 3.26e-52 183
Msa0675080 AT5G46590.2 58.088 136 55 2 5 139 4 138 3.88e-52 174
Msa0675080 AT4G27410.2 50.658 152 70 2 7 156 14 162 5.31e-52 174
Msa0675080 AT5G04410.1 44.560 193 95 6 2 186 4 192 8.59e-52 181
Msa0675080 AT2G43000.1 50.323 155 70 4 9 160 20 170 9.46e-52 173
Msa0675080 AT1G26870.1 47.674 172 72 4 9 166 18 185 1.90e-51 176
Msa0675080 AT1G61110.1 49.701 167 64 5 6 156 15 177 2.29e-51 174
Msa0675080 AT5G24590.2 49.444 180 87 4 3 179 9 187 7.86e-51 176
Msa0675080 AT4G17980.1 53.165 158 67 5 5 156 4 160 8.61e-51 170
Msa0675080 AT3G04070.1 46.703 182 64 4 5 156 8 186 1.01e-50 173
Msa0675080 AT5G08790.1 48.795 166 74 4 1 159 1 162 1.21e-50 171
Msa0675080 AT1G01720.1 44.022 184 90 4 1 178 1 177 1.23e-50 171
Msa0675080 AT3G10500.1 40.724 221 107 6 2 201 4 221 1.58e-50 177
Msa0675080 AT4G17980.2 53.165 158 67 5 5 156 4 160 1.90e-50 170
Msa0675080 AT2G33480.2 50.000 152 70 1 6 157 14 159 2.80e-50 169
Msa0675080 AT4G27410.3 47.590 166 71 3 7 156 14 179 4.00e-50 170
Msa0675080 AT3G10480.3 45.745 188 65 4 5 156 25 211 6.40e-50 175
Msa0675080 AT5G39820.1 44.000 175 70 3 7 156 20 191 6.76e-50 170
Msa0675080 AT3G15500.1 48.077 156 76 2 7 160 14 166 7.05e-50 169
Msa0675080 AT3G49530.2 52.288 153 69 4 7 156 13 164 7.27e-50 172
Msa0675080 AT1G77450.1 45.882 170 83 3 6 170 9 174 7.70e-50 167
Msa0675080 AT3G49530.1 52.288 153 69 4 7 156 13 164 1.43e-49 173
Msa0675080 AT2G33480.1 50.000 154 69 2 6 157 14 161 2.18e-49 167
Msa0675080 AT1G52890.1 48.077 156 76 2 7 160 14 166 3.47e-49 168
Msa0675080 AT4G28530.1 47.953 171 64 5 5 156 8 172 6.81e-49 168
Msa0675080 AT2G18060.2 46.058 241 95 11 88 316 2 219 1.99e-48 164
Msa0675080 AT2G02450.2 47.682 151 75 2 7 156 51 198 5.85e-47 164
Msa0675080 AT2G02450.1 47.682 151 75 2 7 156 51 198 6.08e-47 164
Msa0675080 AT1G32510.1 46.296 162 76 3 5 156 4 164 2.38e-46 159
Msa0675080 AT2G27300.1 47.682 151 72 3 5 155 12 155 4.73e-46 160
Msa0675080 AT3G15510.1 47.826 161 66 4 11 156 21 178 5.18e-46 160
Msa0675080 AT5G13180.1 47.170 159 75 4 2 157 9 161 1.20e-45 157
Msa0675080 AT1G34180.3 45.333 150 79 2 9 156 18 166 1.53e-45 161
Msa0675080 AT1G34180.1 45.333 150 79 2 9 156 18 166 5.33e-45 162
Msa0675080 AT1G34190.1 47.682 151 74 3 9 156 18 166 1.58e-44 161
Msa0675080 AT1G52880.1 47.305 167 71 3 11 163 21 184 2.19e-44 155
Msa0675080 AT5G64060.1 32.979 282 160 8 5 278 4 264 2.45e-44 156
Msa0675080 AT5G09330.5 39.487 195 112 4 5 196 4 195 1.13e-43 157
Msa0675080 AT5G09330.2 39.487 195 112 4 5 196 4 195 1.13e-43 157
Msa0675080 AT5G09330.4 39.487 195 112 4 5 196 4 195 1.13e-43 157
Msa0675080 AT5G09330.3 39.487 195 112 4 5 196 4 195 1.13e-43 157
Msa0675080 AT5G09330.1 39.487 195 112 4 5 196 4 195 1.13e-43 157
Msa0675080 AT5G22290.1 45.638 149 75 2 5 153 19 161 1.48e-43 154
Msa0675080 AT2G17040.1 43.312 157 80 4 9 162 8 158 1.50e-43 152
Msa0675080 AT1G34180.4 41.615 161 81 2 9 156 18 178 1.33e-42 154
Msa0675080 AT1G34180.2 41.615 161 81 2 9 156 18 178 4.08e-42 154
Msa0675080 AT3G12910.1 43.605 172 72 5 9 160 23 189 9.00e-42 148
Msa0675080 AT5G04395.1 46.053 152 69 3 5 143 26 177 3.52e-41 143
Msa0675080 AT3G44290.2 45.600 125 66 1 9 133 16 138 2.59e-39 139
Msa0675080 AT3G12977.2 43.636 165 70 4 52 196 10 171 1.09e-38 137
Msa0675080 AT3G44290.1 45.600 125 66 1 9 133 16 138 1.63e-38 140
Msa0675080 AT5G61430.2 61.616 99 32 2 63 156 6 103 2.78e-38 138
Msa0675080 AT1G32870.2 44.156 154 79 3 7 156 10 160 3.08e-37 140
Msa0675080 AT1G32870.1 44.156 154 79 3 7 156 10 160 3.33e-37 140
Msa0675080 AT1G32870.3 44.156 154 79 3 7 156 46 196 5.74e-37 140
Msa0675080 AT1G56010.1 55.769 104 39 2 65 162 8 110 1.33e-36 133
Msa0675080 AT2G33480.3 50.000 102 49 1 58 157 3 104 1.02e-30 116
Msa0675080 AT5G22380.1 44.275 131 63 5 10 133 8 135 2.36e-29 113
Msa0675080 AT3G44350.2 39.103 156 83 8 10 156 8 160 4.04e-27 107
Msa0675080 AT3G44350.1 41.221 131 68 5 10 134 8 135 1.23e-26 103
Msa0675080 AT4G01520.1 36.424 151 87 5 8 153 5 151 4.23e-26 106
Msa0675080 AT4G28530.2 34.911 169 52 4 5 156 8 135 5.64e-26 106
Msa0675080 AT5G64530.1 35.088 171 78 5 7 159 3 158 8.77e-26 102
Msa0675080 AT1G02230.1 46.565 131 61 6 8 133 4 130 8.80e-26 106
Msa0675080 AT1G02250.1 46.565 131 61 5 8 133 4 130 4.21e-25 104
Msa0675080 AT4G01550.1 36.842 152 86 5 10 156 7 153 5.17e-25 105
Msa0675080 AT4G01540.4 36.242 149 86 5 10 153 7 151 5.53e-25 104
Msa0675080 AT3G04420.2 42.636 129 69 3 8 133 4 130 6.56e-25 102
Msa0675080 AT4G01540.3 36.242 149 86 5 10 153 7 151 7.25e-25 105
Msa0675080 AT4G01540.2 32.979 188 114 6 10 192 7 187 8.31e-25 104
Msa0675080 AT4G01540.1 36.242 149 86 5 10 153 7 151 1.03e-24 105
Msa0675080 AT5G64530.2 41.221 131 60 4 7 135 3 118 1.27e-24 98.6
Msa0675080 AT3G04420.1 42.636 129 69 3 8 133 4 130 2.11e-24 102
Msa0675080 AT2G43000.2 48.913 92 43 3 72 160 2 92 8.17e-23 94.7
Msa0675080 AT3G10490.4 54.545 77 32 1 83 156 2 78 1.71e-22 97.4
Msa0675080 AT3G10490.3 54.545 77 32 1 83 156 2 78 1.71e-22 97.4
Msa0675080 AT1G02220.1 41.085 129 70 4 7 133 3 127 3.34e-20 91.3
Msa0675080 AT1G01010.1 33.974 156 83 7 10 153 6 153 1.87e-19 89.4
Msa0675080 AT5G50820.1 37.410 139 62 6 6 135 16 138 3.87e-18 82.0
Msa0675080 AT3G56530.1 28.188 149 103 2 8 154 53 199 5.53e-18 84.0
Msa0675080 AT5G22290.2 44.928 69 34 1 89 157 2 66 1.39e-15 75.9
Msa0675080 AT3G55210.1 27.950 161 99 5 7 154 11 167 1.38e-14 73.6
Msa0675080 AT5G14000.2 29.771 131 85 2 7 135 15 140 3.77e-14 69.7
Msa0675080 AT5G14000.1 27.673 159 107 3 1 157 9 161 4.67e-14 70.9
Msa0675080 AT3G04430.1 35.075 134 70 6 13 133 6 135 1.74e-11 63.2
Msa0675080 AT4G28500.1 29.341 167 91 9 7 154 59 217 6.35e-11 63.2

Find 70 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGATACTTCTTATCTTTA+TGG 0.078281 4_4:-23437391 None:intergenic
CAATATTGAATTCAGAAATT+TGG 0.171673 4_4:+23439081 Msa0675080:CDS
GAGCAACTGCAGCTGGATTT+TGG 0.212597 4_4:+23437432 Msa0675080:CDS
TGTTGTAACCATTGGATTAG+AGG 0.295684 4_4:-23438819 None:intergenic
TAATTGTTGGTATATCAAAT+TGG 0.305571 4_4:-23438675 None:intergenic
TAGTCAAAGGAAAAGGTCTT+TGG 0.307210 4_4:-23435545 None:intergenic
AATTGTCACGAGACATGTTT+TGG 0.317098 4_4:-23438739 None:intergenic
AATAATAACAACATCTTTCA+TGG 0.344913 4_4:+23439058 Msa0675080:CDS
TTGACTAATTAATTATATCT+TGG 0.350029 4_4:+23435561 Msa0675080:five_prime_UTR
GAAGAAGATTGAACAAGCTT+TGG 0.352286 4_4:-23438788 None:intergenic
AGTTTCATTCATGCAAGATA+TGG 0.353877 4_4:+23438628 Msa0675080:CDS
TTTATAGAGATTTGCAGAAT+AGG 0.359693 4_4:+23437335 Msa0675080:intron
TATAGTAAGCATAATTTGAT+AGG 0.379805 4_4:+23437482 Msa0675080:CDS
AAAGATAAGAAGTATCCAAC+TGG 0.410251 4_4:+23437395 Msa0675080:CDS
CTATTTGTTCTTGTCCCAGT+TGG 0.412869 4_4:-23437410 None:intergenic
AGGCTTGAAACAGATGAAAA+TGG 0.413374 4_4:+23437581 Msa0675080:CDS
CAAAACTTTCATGCTATGTA+TGG 0.416700 4_4:+23438926 Msa0675080:CDS
AGTCAAAGGAAAAGGTCTTT+GGG 0.417990 4_4:-23435544 None:intergenic
CAAACACAAGTTGGATATGA+TGG 0.442162 4_4:+23439143 Msa0675080:CDS
TCAAATTGGATTGAGAGGTT+TGG 0.444509 4_4:-23438661 None:intergenic
GTGTCATATGTTGTAACCAT+TGG 0.449797 4_4:-23438827 None:intergenic
ACAAATAGAGCAACTGCAGC+TGG 0.455592 4_4:+23437425 Msa0675080:CDS
GGAAGAAAATTGATTCAAGA+AGG 0.463332 4_4:+23436864 Msa0675080:CDS
AAATGAAAGCAAAGGCAAGC+TGG 0.470082 4_4:-23435402 None:intergenic
CCTCTACATCAAACACAAGT+TGG 0.475978 4_4:+23439134 Msa0675080:CDS
TTCCAATGTTGAACAAGGTA+TGG 0.483739 4_4:+23438955 Msa0675080:CDS
CCAACTTGTGTTTGATGTAG+AGG 0.486977 4_4:-23439134 None:intergenic
TTGGATTGAGAGGTTTGGTT+TGG 0.487041 4_4:-23438656 None:intergenic
ATTGGATAATGCATGAGTAT+AGG 0.487765 4_4:+23437561 Msa0675080:CDS
CCTTTACAAAATTGAACCAT+GGG 0.489236 4_4:+23436916 Msa0675080:CDS
AACCATACCTTGTTCAACAT+TGG 0.489325 4_4:-23438957 None:intergenic
GTGAGCATGACTCTCCTTGT+TGG 0.496787 4_4:+23438594 Msa0675080:CDS
CCAATGGACAAAAGTCAGAT+TGG 0.499786 4_4:+23437543 Msa0675080:CDS
ATTGAACCATGGGATCTTGA+AGG 0.503378 4_4:+23436926 Msa0675080:CDS
TTGATGATCAAGTTACTGAT+TGG 0.505048 4_4:+23438978 Msa0675080:CDS
GTTTGGAGCAGGAGGAAGGA+TGG 0.509198 4_4:+23438519 Msa0675080:intron
AACTTGTGGATTACTACCTT+AGG 0.520831 4_4:+23436843 Msa0675080:CDS
GATAGGAATGAGGAAAACAT+TGG 0.522127 4_4:+23437499 Msa0675080:CDS
GACGGTTTGGAGCAGGAGGA+AGG 0.522417 4_4:+23438515 Msa0675080:intron
AATTAATTAGTCAAAGGAAA+AGG 0.523043 4_4:-23435552 None:intergenic
AAATTTGGAGAAACAAGAAA+TGG 0.525812 4_4:+23439096 Msa0675080:CDS
AAGAATATGATGGTAATTGT+TGG 0.533908 4_4:-23438688 None:intergenic
TGGGATGGAACCTAAACCCC+GGG 0.538292 4_4:-23436811 None:intergenic
TCCCACAGATGAGGAACTTG+TGG 0.541887 4_4:+23436829 Msa0675080:CDS
TTTGGAGCAGGAGGAAGGAT+GGG 0.544311 4_4:+23438520 Msa0675080:intron
AATGAAAGCAAAGGCAAGCT+GGG 0.545140 4_4:-23435401 None:intergenic
GTATATCAAATTGGATTGAG+AGG 0.548657 4_4:-23438666 None:intergenic
ATCCACAAGTTCCTCATCTG+TGG 0.551212 4_4:-23436831 None:intergenic
ACCTTTACAAAATTGAACCA+TGG 0.552414 4_4:+23436915 Msa0675080:CDS
ACAAGAAGAAATGAAAGCAA+AGG 0.555525 4_4:-23435410 None:intergenic
AGCATAATTTGATAGGAATG+AGG 0.556802 4_4:+23437489 Msa0675080:CDS
GAAGAACAAGTTATACAAAG+TGG 0.557940 4_4:+23438896 Msa0675080:CDS
CTTATACCTTCAAGATCCCA+TGG 0.563913 4_4:-23436932 None:intergenic
AAACATAACCTCTAATCCAA+TGG 0.567146 4_4:+23438811 Msa0675080:CDS
TCTTGTAAGAGCATTGATGA+AGG 0.569946 4_4:-23438875 None:intergenic
AGCTTTGGACTCTCTAGAAG+TGG 0.581594 4_4:-23438773 None:intergenic
CAAGTTCCTCATCTGTGGGA+TGG 0.581878 4_4:-23436826 None:intergenic
TCCACAAGTTCCTCATCTGT+GGG 0.587470 4_4:-23436830 None:intergenic
AGATATAATTAATTAGTCAA+AGG 0.591128 4_4:-23435558 None:intergenic
AGATGAAAATGGCACACCAC+AGG 0.593474 4_4:+23437592 Msa0675080:CDS
TAGGTTCCATCCCACAGATG+AGG 0.602397 4_4:+23436820 Msa0675080:CDS
TATAAAGGTCGAGCTCCCAA+TGG 0.627931 4_4:+23437527 Msa0675080:CDS
AACAATTCCAATGTTGAACA+AGG 0.643045 4_4:+23438950 Msa0675080:CDS
GTGGGATGGAACCTAAACCC+CGG 0.647443 4_4:-23436812 None:intergenic
GAAAGCAACAGGAAGAGACA+AGG 0.657167 4_4:+23437454 Msa0675080:CDS
GAACCGAAGAACAAAATGAG+TGG 0.672469 4_4:+23437357 Msa0675080:CDS
AAGATAAGAAGTATCCAACT+GGG 0.681306 4_4:+23437396 Msa0675080:CDS
ACTTGATCTTCATACCAACA+AGG 0.708859 4_4:-23438608 None:intergenic
GGATGGAACCTAAACCCCGG+GGG 0.731147 4_4:-23436809 None:intergenic
GGGATGGAACCTAAACCCCG+GGG 0.785968 4_4:-23436810 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTCTTTTATGAAAATT+AGG + chr4_4:23436485-23436504 Msa0675080:intron 10.0%
!! TCAAAAAAGAAAAATAAAAA+AGG - chr4_4:23437314-23437333 None:intergenic 10.0%
!! AGATATAATTAATTAGTCAA+AGG - chr4_4:23435561-23435580 None:intergenic 15.0%
!! TTGACTAATTAATTATATCT+TGG + chr4_4:23435561-23435580 Msa0675080:five_prime_UTR 15.0%
!!! TTTATACATCAACTAATTTT+TGG + chr4_4:23435685-23435704 Msa0675080:five_prime_UTR 15.0%
!!! ATTTTCAAAATATTCTATGT+CGG + chr4_4:23435949-23435968 Msa0675080:intron 15.0%
!! CTAAGAAAAATTTAAACTTA+GGG - chr4_4:23436122-23436141 None:intergenic 15.0%
!!! AAAATATTTTATAGAGAAAG+AGG + chr4_4:23436570-23436589 Msa0675080:intron 15.0%
!! TATTTGATATATGCTTAATT+TGG + chr4_4:23436676-23436695 Msa0675080:intron 15.0%
!! AATTAGAAAAGTTAATTGAT+AGG - chr4_4:23436729-23436748 None:intergenic 15.0%
!! TCTAAATATATGTTTATAAG+TGG - chr4_4:23438043-23438062 None:intergenic 15.0%
!! AATTAATTAGTCAAAGGAAA+AGG - chr4_4:23435555-23435574 None:intergenic 20.0%
!! CTAATTAATTATATCTTGGT+TGG + chr4_4:23435565-23435584 Msa0675080:intron 20.0%
!! TAATTTAGTGAAAGAATTAG+AGG - chr4_4:23435811-23435830 None:intergenic 20.0%
!! CCTAAGAAAAATTTAAACTT+AGG - chr4_4:23436123-23436142 None:intergenic 20.0%
!!! CCTAAGTTTAAATTTTTCTT+AGG + chr4_4:23436120-23436139 Msa0675080:intron 20.0%
!! GAATAATGTTAGACAAAATA+AGG + chr4_4:23436142-23436161 Msa0675080:intron 20.0%
!! TGATATATGACATATATACA+TGG - chr4_4:23436345-23436364 None:intergenic 20.0%
!! CATATATCATGAAACAATAT+TGG + chr4_4:23436356-23436375 Msa0675080:intron 20.0%
!! TTTAAAGAATGTCAAATTGT+GGG - chr4_4:23436414-23436433 None:intergenic 20.0%
!! ATTTAAAGAATGTCAAATTG+TGG - chr4_4:23436415-23436434 None:intergenic 20.0%
!! ACATTCTTTAAATTCTTGTA+AGG + chr4_4:23436422-23436441 Msa0675080:intron 20.0%
!! CATTCTTTAAATTCTTGTAA+GGG + chr4_4:23436423-23436442 Msa0675080:intron 20.0%
!!! TGCTTGTTGAATAAAAAAAA+AGG - chr4_4:23436547-23436566 None:intergenic 20.0%
!! TCAATGAATAAAGTGATATT+TGG - chr4_4:23436702-23436721 None:intergenic 20.0%
!!! AATTTGATATATGTGTTTTC+AGG + chr4_4:23436745-23436764 Msa0675080:intron 20.0%
!! TTTGGATTAATATCAAAGTT+TGG - chr4_4:23437008-23437027 None:intergenic 20.0%
!!! AAATAGTGAACTTTTTTTGT+GGG - chr4_4:23437148-23437167 None:intergenic 20.0%
!!! TAAATAGTGAACTTTTTTTG+TGG - chr4_4:23437149-23437168 None:intergenic 20.0%
!! AAAATAATTTGATACTGAAG+CGG - chr4_4:23437176-23437195 None:intergenic 20.0%
!!! TTATTTTTCAGTTTCTTAGT+AGG + chr4_4:23437189-23437208 Msa0675080:intron 20.0%
!! TATAGTAAGCATAATTTGAT+AGG + chr4_4:23437482-23437501 Msa0675080:CDS 20.0%
!!! AAAACATTGGTGTTTTATAA+AGG + chr4_4:23437512-23437531 Msa0675080:CDS 20.0%
!! TCTCTAGATTTATTTAATGT+TGG + chr4_4:23437636-23437655 Msa0675080:intron 20.0%
!!! GTAATTCTCATTTTACAAAT+CGG - chr4_4:23438017-23438036 None:intergenic 20.0%
!!! ATGTTATAGATTAGTTTGTA+CGG + chr4_4:23438320-23438339 Msa0675080:intron 20.0%
!!! TTTGTTTTTGTTATTTTCGA+CGG + chr4_4:23438497-23438516 Msa0675080:intron 20.0%
!! TAATTGTTGGTATATCAAAT+TGG - chr4_4:23438678-23438697 None:intergenic 20.0%
!! AATAATAACAACATCTTTCA+TGG + chr4_4:23439058-23439077 Msa0675080:CDS 20.0%
!! CAATATTGAATTCAGAAATT+TGG + chr4_4:23439081-23439100 Msa0675080:CDS 20.0%
!! TAACATTGTTGTGTTTTTCT+TGG + chr4_4:23435474-23435493 Msa0675080:five_prime_UTR 25.0%
!! AACATTGTTGTGTTTTTCTT+GGG + chr4_4:23435475-23435494 Msa0675080:five_prime_UTR 25.0%
!!! ATACATCAACTAATTTTTGG+AGG + chr4_4:23435688-23435707 Msa0675080:five_prime_UTR 25.0%
! AAAGAAATTTCAGCACAAAA+AGG + chr4_4:23436020-23436039 Msa0675080:intron 25.0%
!!! TTTTTTATCCTTTAGAAGCA+TGG + chr4_4:23436178-23436197 Msa0675080:intron 25.0%
! AGCATATATCAAATAGACTT+TGG - chr4_4:23436671-23436690 None:intergenic 25.0%
!!! TTTTCAGGATTATAAAAGAG+AGG + chr4_4:23436760-23436779 Msa0675080:intron 25.0%
!! TTGAATCAATTTTCTTCCTA+AGG - chr4_4:23436862-23436881 None:intergenic 25.0%
! TTTATAGAGATTTGCAGAAT+AGG + chr4_4:23437335-23437354 Msa0675080:intron 25.0%
! TTGGATACTTCTTATCTTTA+TGG - chr4_4:23437394-23437413 None:intergenic 25.0%
!!! TTTACAAATCGGTTTTGTAA+TGG - chr4_4:23438006-23438025 None:intergenic 25.0%
! GCAATAGATAAGTCTAATAT+TGG - chr4_4:23438077-23438096 None:intergenic 25.0%
! AGTTGAAATCGTAATTTCTA+TGG + chr4_4:23438137-23438156 Msa0675080:intron 25.0%
! CATATACACAACAAAATATG+AGG + chr4_4:23438164-23438183 Msa0675080:intron 25.0%
!! AACAATAACAATTAGGGTTT+TGG - chr4_4:23438240-23438259 None:intergenic 25.0%
! ATCGACAACAATAACAATTA+GGG - chr4_4:23438246-23438265 None:intergenic 25.0%
!!! TGTTATAGATTAGTTTGTAC+GGG + chr4_4:23438321-23438340 Msa0675080:intron 25.0%
!!! TAACAAATGTTAGTCTTCTA+AGG - chr4_4:23438436-23438455 None:intergenic 25.0%
! AAGAATATGATGGTAATTGT+TGG - chr4_4:23438691-23438710 None:intergenic 25.0%
!!! TCTTTTTTGCAAGAATATGA+TGG - chr4_4:23438701-23438720 None:intergenic 25.0%
! AAATTTGGAGAAACAAGAAA+TGG + chr4_4:23439096-23439115 Msa0675080:CDS 25.0%
ACAAGAAGAAATGAAAGCAA+AGG - chr4_4:23435413-23435432 None:intergenic 30.0%
AAACAGACAAAAAAGTTGAG+AGG + chr4_4:23435513-23435532 Msa0675080:five_prime_UTR 30.0%
AACAGACAAAAAAGTTGAGA+GGG + chr4_4:23435514-23435533 Msa0675080:five_prime_UTR 30.0%
! TTTTTGCAAGATCAACAATG+TGG - chr4_4:23436003-23436022 None:intergenic 30.0%
!! CTTAGGGTTTTTAGAAAATG+TGG - chr4_4:23436106-23436125 None:intergenic 30.0%
ATTTATCACCATGCTTCTAA+AGG - chr4_4:23436189-23436208 None:intergenic 30.0%
AAGCATGGTGATAAATAAGT+GGG + chr4_4:23436193-23436212 Msa0675080:intron 30.0%
! GGAAGAAAATTGATTCAAGA+AGG + chr4_4:23436864-23436883 Msa0675080:CDS 30.0%
ACCTTTACAAAATTGAACCA+TGG + chr4_4:23436915-23436934 Msa0675080:CDS 30.0%
CCTTTACAAAATTGAACCAT+GGG + chr4_4:23436916-23436935 Msa0675080:CDS 30.0%
! TATCAAAGTTTGGAGCATAA+TGG - chr4_4:23436998-23437017 None:intergenic 30.0%
GATTGTATTTATGTGCAGTT+TGG - chr4_4:23437026-23437045 None:intergenic 30.0%
GACATTACGTAATATATGCA+GGG + chr4_4:23437082-23437101 Msa0675080:intron 30.0%
ACATTACGTAATATATGCAG+GGG + chr4_4:23437083-23437102 Msa0675080:intron 30.0%
! ATACCACTCATTTTGTTCTT+CGG - chr4_4:23437363-23437382 None:intergenic 30.0%
!! AAAGATAAGAAGTATCCAAC+TGG + chr4_4:23437395-23437414 Msa0675080:CDS 30.0%
!! AAGATAAGAAGTATCCAACT+GGG + chr4_4:23437396-23437415 Msa0675080:CDS 30.0%
AGCATAATTTGATAGGAATG+AGG + chr4_4:23437489-23437508 Msa0675080:CDS 30.0%
ATTGGATAATGCATGAGTAT+AGG + chr4_4:23437561-23437580 Msa0675080:CDS 30.0%
GTGTTTATCCAACATTCATT+GGG - chr4_4:23437946-23437965 None:intergenic 30.0%
TGTGTTTATCCAACATTCAT+TGG - chr4_4:23437947-23437966 None:intergenic 30.0%
ACAAATATCATCTTCGTGTT+TGG + chr4_4:23437964-23437983 Msa0675080:intron 30.0%
GATCGACAACAATAACAATT+AGG - chr4_4:23438247-23438266 None:intergenic 30.0%
GATAAAGTTGTGTTAACTCT+TGG + chr4_4:23438278-23438297 Msa0675080:intron 30.0%
!! AGACATTGAGAGTATTAAGA+AGG - chr4_4:23438391-23438410 None:intergenic 30.0%
!!! TTTTGTTATTTTCGACGGTT+TGG + chr4_4:23438502-23438521 Msa0675080:intron 30.0%
AGTTTCATTCATGCAAGATA+TGG + chr4_4:23438628-23438647 Msa0675080:CDS 30.0%
GTATATCAAATTGGATTGAG+AGG - chr4_4:23438669-23438688 None:intergenic 30.0%
AAACATAACCTCTAATCCAA+TGG + chr4_4:23438811-23438830 Msa0675080:CDS 30.0%
GAAGAACAAGTTATACAAAG+TGG + chr4_4:23438896-23438915 Msa0675080:CDS 30.0%
CAAAACTTTCATGCTATGTA+TGG + chr4_4:23438926-23438945 Msa0675080:CDS 30.0%
AACAATTCCAATGTTGAACA+AGG + chr4_4:23438950-23438969 Msa0675080:CDS 30.0%
! TTGATGATCAAGTTACTGAT+TGG + chr4_4:23438978-23438997 Msa0675080:CDS 30.0%
AGTCAAAGGAAAAGGTCTTT+GGG - chr4_4:23435547-23435566 None:intergenic 35.0%
TAGTCAAAGGAAAAGGTCTT+TGG - chr4_4:23435548-23435567 None:intergenic 35.0%
! ACTTGACTCTTGACACTTTT+TGG + chr4_4:23435721-23435740 Msa0675080:five_prime_UTR 35.0%
TCAGCACAAAAAGGAAAGAT+AGG + chr4_4:23436029-23436048 Msa0675080:intron 35.0%
!! AGGGTTTTTAGAAAATGTGG+AGG - chr4_4:23436103-23436122 None:intergenic 35.0%
GAAGCATGGTGATAAATAAG+TGG + chr4_4:23436192-23436211 Msa0675080:intron 35.0%
GAACATGATGATTATGCATG+TGG - chr4_4:23436311-23436330 None:intergenic 35.0%
CAAATTGTGGGATCAAAATG+TGG - chr4_4:23436402-23436421 None:intergenic 35.0%
! AACTTGTGGATTACTACCTT+AGG + chr4_4:23436843-23436862 Msa0675080:CDS 35.0%
! CCCATGGTTCAATTTTGTAA+AGG - chr4_4:23436919-23436938 None:intergenic 35.0%
GGACATTACGTAATATATGC+AGG + chr4_4:23437081-23437100 Msa0675080:intron 35.0%
TGTGGGACTACAATATAAGT+GGG - chr4_4:23437131-23437150 None:intergenic 35.0%
TTGTGGGACTACAATATAAG+TGG - chr4_4:23437132-23437151 None:intergenic 35.0%
GATAGGAATGAGGAAAACAT+TGG + chr4_4:23437499-23437518 Msa0675080:CDS 35.0%
! CAATCTGACTTTTGTCCATT+GGG - chr4_4:23437545-23437564 None:intergenic 35.0%
AGGCTTGAAACAGATGAAAA+TGG + chr4_4:23437581-23437600 Msa0675080:CDS 35.0%
! AAGAGTTTCGCCAAAAGTAT+CGG + chr4_4:23437723-23437742 Msa0675080:intron 35.0%
! TGGTTTCAAACCGATACTTT+TGG - chr4_4:23437736-23437755 None:intergenic 35.0%
! CTTACAAGTTCACCTTTTAG+GGG - chr4_4:23437778-23437797 None:intergenic 35.0%
! CCTTACAAGTTCACCTTTTA+GGG - chr4_4:23437779-23437798 None:intergenic 35.0%
! ACCTTACAAGTTCACCTTTT+AGG - chr4_4:23437780-23437799 None:intergenic 35.0%
ATGAGGCAAAATAAACCTAG+AGG + chr4_4:23438181-23438200 Msa0675080:intron 35.0%
ACTTGATCTTCATACCAACA+AGG - chr4_4:23438611-23438630 None:intergenic 35.0%
TCAAATTGGATTGAGAGGTT+TGG - chr4_4:23438664-23438683 None:intergenic 35.0%
! AATTGTCACGAGACATGTTT+TGG - chr4_4:23438742-23438761 None:intergenic 35.0%
GAAGAAGATTGAACAAGCTT+TGG - chr4_4:23438791-23438810 None:intergenic 35.0%
! TGTTGTAACCATTGGATTAG+AGG - chr4_4:23438822-23438841 None:intergenic 35.0%
GTGTCATATGTTGTAACCAT+TGG - chr4_4:23438830-23438849 None:intergenic 35.0%
!! TCTTGTAAGAGCATTGATGA+AGG - chr4_4:23438878-23438897 None:intergenic 35.0%
TTCCAATGTTGAACAAGGTA+TGG + chr4_4:23438955-23438974 Msa0675080:CDS 35.0%
AACCATACCTTGTTCAACAT+TGG - chr4_4:23438960-23438979 None:intergenic 35.0%
AATGAAAGCAAAGGCAAGCT+GGG - chr4_4:23435404-23435423 None:intergenic 40.0%
AAATGAAAGCAAAGGCAAGC+TGG - chr4_4:23435405-23435424 None:intergenic 40.0%
!! TGACTCTTGACACTTTTTGG+AGG + chr4_4:23435724-23435743 Msa0675080:five_prime_UTR 40.0%
!!! TACTTTTTCTCATGTTCCCC+CGG + chr4_4:23436793-23436812 Msa0675080:CDS 40.0%
ATTGAACCATGGGATCTTGA+AGG + chr4_4:23436926-23436945 Msa0675080:CDS 40.0%
CTTATACCTTCAAGATCCCA+TGG - chr4_4:23436935-23436954 None:intergenic 40.0%
GAGCATAATGGCAACAACAA+CGG - chr4_4:23436986-23437005 None:intergenic 40.0%
TCTCATGTGTGTAGCTCATT+TGG + chr4_4:23437055-23437074 Msa0675080:intron 40.0%
!! CAATATAAGTGGGTTGTCCA+GGG - chr4_4:23437121-23437140 None:intergenic 40.0%
!! ACAATATAAGTGGGTTGTCC+AGG - chr4_4:23437122-23437141 None:intergenic 40.0%
GAACCGAAGAACAAAATGAG+TGG + chr4_4:23437357-23437376 Msa0675080:CDS 40.0%
CTATTTGTTCTTGTCCCAGT+TGG - chr4_4:23437413-23437432 None:intergenic 40.0%
! CCAATCTGACTTTTGTCCAT+TGG - chr4_4:23437546-23437565 None:intergenic 40.0%
CCAATGGACAAAAGTCAGAT+TGG + chr4_4:23437543-23437562 Msa0675080:CDS 40.0%
!!! AGTTTTGAATCACTTGCCTG+TGG - chr4_4:23437611-23437630 None:intergenic 40.0%
!! AAGTTCACCTTTTAGGGGTT+GGG - chr4_4:23437773-23437792 None:intergenic 40.0%
CCCTAAAAGGTGAACTTGTA+AGG + chr4_4:23437776-23437795 Msa0675080:intron 40.0%
AAGAGTGACCCAATGAATGT+TGG + chr4_4:23437935-23437954 Msa0675080:intron 40.0%
GGAAAAAGTTCCAAGACTCT+TGG - chr4_4:23438219-23438238 None:intergenic 40.0%
TAAGGCGTAGTACAATGGTA+TGG - chr4_4:23438418-23438437 None:intergenic 40.0%
!! TCTTCTAAGGCGTAGTACAA+TGG - chr4_4:23438423-23438442 None:intergenic 40.0%
! TTGGATTGAGAGGTTTGGTT+TGG - chr4_4:23438659-23438678 None:intergenic 40.0%
!!! CACGAGACATGTTTTGGAAT+GGG - chr4_4:23438736-23438755 None:intergenic 40.0%
!!! TCACGAGACATGTTTTGGAA+TGG - chr4_4:23438737-23438756 None:intergenic 40.0%
!!! GATGTAGAGGCATTTTCATG+AGG - chr4_4:23439124-23439143 None:intergenic 40.0%
CCAACTTGTGTTTGATGTAG+AGG - chr4_4:23439137-23439156 None:intergenic 40.0%
CCTCTACATCAAACACAAGT+TGG + chr4_4:23439134-23439153 Msa0675080:CDS 40.0%
!! ACTTTTTCTCATGTTCCCCC+GGG + chr4_4:23436794-23436813 Msa0675080:CDS 45.0%
TCCACAAGTTCCTCATCTGT+GGG - chr4_4:23436833-23436852 None:intergenic 45.0%
ATCCACAAGTTCCTCATCTG+TGG - chr4_4:23436834-23436853 None:intergenic 45.0%
TGTGTGTAGCTCATTTGGCA+TGG + chr4_4:23437060-23437079 Msa0675080:intron 45.0%
ACAAATAGAGCAACTGCAGC+TGG + chr4_4:23437425-23437444 Msa0675080:CDS 45.0%
!! GCTGGATTTTGGAAAGCAAC+AGG + chr4_4:23437443-23437462 Msa0675080:CDS 45.0%
GAAAGCAACAGGAAGAGACA+AGG + chr4_4:23437454-23437473 Msa0675080:CDS 45.0%
TATAAAGGTCGAGCTCCCAA+TGG + chr4_4:23437527-23437546 Msa0675080:CDS 45.0%
AGATGAAAATGGCACACCAC+AGG + chr4_4:23437592-23437611 Msa0675080:CDS 45.0%
!! CAAGTTCACCTTTTAGGGGT+TGG - chr4_4:23437774-23437793 None:intergenic 45.0%
CATTCCAAACGTCCAACCTT+AGG - chr4_4:23437882-23437901 None:intergenic 45.0%
!! GTTTGGAATGCGACTTGGTT+GGG + chr4_4:23437892-23437911 Msa0675080:intron 45.0%
!! TTGGGCTAGTACTGGTAACA+TGG + chr4_4:23437910-23437929 Msa0675080:intron 45.0%
!! TGGGCTAGTACTGGTAACAT+GGG + chr4_4:23437911-23437930 Msa0675080:intron 45.0%
AAGTTCCAAGACTCTTGGCT+TGG - chr4_4:23438214-23438233 None:intergenic 45.0%
!! ATTAGTTTGTACGGGTCGAG+AGG + chr4_4:23438329-23438348 Msa0675080:intron 45.0%
!! TATTTTCGACGGTTTGGAGC+AGG + chr4_4:23438508-23438527 Msa0675080:intron 45.0%
!! AGCTTTGGACTCTCTAGAAG+TGG - chr4_4:23438776-23438795 None:intergenic 45.0%
! CTTTTTCTCATGTTCCCCCG+GGG + chr4_4:23436795-23436814 Msa0675080:CDS 50.0%
TAGGTTCCATCCCACAGATG+AGG + chr4_4:23436820-23436839 Msa0675080:CDS 50.0%
CAAGTTCCTCATCTGTGGGA+TGG - chr4_4:23436829-23436848 None:intergenic 50.0%
TCCCACAGATGAGGAACTTG+TGG + chr4_4:23436829-23436848 Msa0675080:CDS 50.0%
CGTAATATATGCAGGGGTCG+TGG + chr4_4:23437089-23437108 Msa0675080:intron 50.0%
! GAGCAACTGCAGCTGGATTT+TGG + chr4_4:23437432-23437451 Msa0675080:CDS 50.0%
! GTTGGGTTAGGCTCAACTCA+TGG - chr4_4:23437756-23437775 None:intergenic 50.0%
AGCCTAACCCAACCCCTAAA+AGG + chr4_4:23437763-23437782 Msa0675080:intron 50.0%
!! CACCTTTTAGGGGTTGGGTT+AGG - chr4_4:23437768-23437787 None:intergenic 50.0%
! TGGACGTTTGGAATGCGACT+TGG + chr4_4:23437887-23437906 Msa0675080:intron 50.0%
!! CGTTTGGAATGCGACTTGGT+TGG + chr4_4:23437891-23437910 Msa0675080:intron 50.0%
! TGGCTTGGACTACATCCTCT+AGG - chr4_4:23438199-23438218 None:intergenic 50.0%
GTAGTCCAAGCCAAGAGTCT+TGG + chr4_4:23438206-23438225 Msa0675080:intron 50.0%
! TTTGGAGCAGGAGGAAGGAT+GGG + chr4_4:23438520-23438539 Msa0675080:intron 50.0%
GTGAGCATGACTCTCCTTGT+TGG + chr4_4:23438594-23438613 Msa0675080:CDS 50.0%
TGGGATGGAACCTAAACCCC+GGG - chr4_4:23436814-23436833 None:intergenic 55.0%
GTGGGATGGAACCTAAACCC+CGG - chr4_4:23436815-23436834 None:intergenic 55.0%
GCGTGAGTGGTGTGTGTTGA+AGG - chr4_4:23437860-23437879 None:intergenic 55.0%
ACACACACCACTCACGCCTA+AGG + chr4_4:23437863-23437882 Msa0675080:intron 55.0%
ACACCACTCACGCCTAAGGT+TGG + chr4_4:23437867-23437886 Msa0675080:intron 55.0%
CACGCCTAAGGTTGGACGTT+TGG + chr4_4:23437875-23437894 Msa0675080:intron 55.0%
!! CGACTTGGTTGGGCTAGTAC+TGG + chr4_4:23437902-23437921 Msa0675080:intron 55.0%
! TTTCGACGGTTTGGAGCAGG+AGG + chr4_4:23438511-23438530 Msa0675080:intron 55.0%
! GTTTGGAGCAGGAGGAAGGA+TGG + chr4_4:23438519-23438538 Msa0675080:intron 55.0%
CTCATGTTCCCCCGGGGTTT+AGG + chr4_4:23436801-23436820 Msa0675080:CDS 60.0%
GGATGGAACCTAAACCCCGG+GGG - chr4_4:23436812-23436831 None:intergenic 60.0%
GGGATGGAACCTAAACCCCG+GGG - chr4_4:23436813-23436832 None:intergenic 60.0%
CGTCCAACCTTAGGCGTGAG+TGG - chr4_4:23437873-23437892 None:intergenic 60.0%
! GACGGTTTGGAGCAGGAGGA+AGG + chr4_4:23438515-23438534 Msa0675080:intron 60.0%
AGGGGTCGTGGTTCGAACCC+TGG + chr4_4:23437101-23437120 Msa0675080:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 23435370 23439162 23435370 ID=Msa0675080;Name=Msa0675080
chr4_4 mRNA 23435370 23439162 23435370 ID=Msa0675080-mRNA-1;Parent=Msa0675080;Name=Msa0675080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=326|0.75|0.6|1|0.5|0.6|5|0|354
chr4_4 exon 23435370 23435582 23435370 ID=Msa0675080-mRNA-1:exon:6534;Parent=Msa0675080-mRNA-1
chr4_4 exon 23435685 23435776 23435685 ID=Msa0675080-mRNA-1:exon:6535;Parent=Msa0675080-mRNA-1
chr4_4 exon 23436767 23436947 23436767 ID=Msa0675080-mRNA-1:exon:6536;Parent=Msa0675080-mRNA-1
chr4_4 exon 23437342 23437613 23437342 ID=Msa0675080-mRNA-1:exon:6537;Parent=Msa0675080-mRNA-1
chr4_4 exon 23438530 23439162 23438530 ID=Msa0675080-mRNA-1:exon:6538;Parent=Msa0675080-mRNA-1
chr4_4 five_prime_UTR 23435370 23435582 23435370 ID=Msa0675080-mRNA-1:five_prime_utr;Parent=Msa0675080-mRNA-1
chr4_4 five_prime_UTR 23435685 23435776 23435685 ID=Msa0675080-mRNA-1:five_prime_utr;Parent=Msa0675080-mRNA-1
chr4_4 five_prime_UTR 23436767 23436787 23436767 ID=Msa0675080-mRNA-1:five_prime_utr;Parent=Msa0675080-mRNA-1
chr4_4 CDS 23436788 23436947 23436788 ID=Msa0675080-mRNA-1:cds;Parent=Msa0675080-mRNA-1
chr4_4 CDS 23437342 23437613 23437342 ID=Msa0675080-mRNA-1:cds;Parent=Msa0675080-mRNA-1
chr4_4 CDS 23438530 23439162 23438530 ID=Msa0675080-mRNA-1:cds;Parent=Msa0675080-mRNA-1
Gene Sequence

>Msa0675080

ATGAATACTTTTTCTCATGTTCCCCCGGGGTTTAGGTTCCATCCCACAGATGAGGAACTTGTGGATTACTACCTTAGGAAGAAAATTGATTCAAGAAGGATTGATCTTGATGTCATAAGAGATGTTGACCTTTACAAAATTGAACCATGGGATCTTGAAGAGATTTGCAGAATAGGAACCGAAGAACAAAATGAGTGGTATTTTTTTAGCCATAAAGATAAGAAGTATCCAACTGGGACAAGAACAAATAGAGCAACTGCAGCTGGATTTTGGAAAGCAACAGGAAGAGACAAGGCAATCTATAGTAAGCATAATTTGATAGGAATGAGGAAAACATTGGTGTTTTATAAAGGTCGAGCTCCCAATGGACAAAAGTCAGATTGGATAATGCATGAGTATAGGCTTGAAACAGATGAAAATGGCACACCACAGGAGGAAGGATGGGTTGTATGTAGAGTATTCAAGAAGAGAGTAACAACAACAATTCGCAAAATGAGTGAGCATGACTCTCCTTGTTGGTATGAAGATCAAGTTTCATTCATGCAAGATATGGACTCACCAAACCAAACCTCTCAATCCAATTTGATATACCAACAATTACCATCATATTCTTGCAAAAAAGAGCTAGATAATTTCCCATTCCAAAACATGTCTCGTGACAATTATCTTAATCTTCCACTTCTAGAGAGTCCAAAGCTTGTTCAATCTTCTTCAAACATAACCTCTAATCCAATGGTTACAACATATGACACTATAGATCATTCAAATTCTATGCTTCCTTCATCAATGCTCTTACAAGAAGAACAAGTTATACAAAGTGGTAATCAACAAAACTTTCATGCTATGTATGGAAACAATTCCAATGTTGAACAAGGTATGGTTGATGATCAAGTTACTGATTGGAGAGTTCTTGACAAGTTTGTTGCTTCACAACTTAGTCAAGAAGATGCATCTAAAGTGAATAATAACAACATCTTTCATGGCAATATTGAATTCAGAAATTTGGAGAAACAAGAAATGGTGCCTCATGAAAATGCCTCTACATCAAACACAAGTTGGATATGA
Protein sequence

>Msa0675080

MNTFSHVPPGFRFHPTDEELVDYYLRKKIDSRRIDLDVIRDVDLYKIEPWDLEEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRVTTTIRKMSEHDSPCWYEDQVSFMQDMDSPNQTSQSNLIYQQLPSYSCKKELDNFPFQNMSRDNYLNLPLLESPKLVQSSSNITSNPMVTTYDTIDHSNSMLPSSMLLQEEQVIQSGNQQNFHAMYGNNSNVEQGMVDDQVTDWRVLDKFVASQLSQEDASKVNNNNIFHGNIEFRNLEKQEMVPHENASTSNTSWI*