AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173890 MtrunA17_Chr1g0194051 96.115 489 19 0 1 489 1 489 0.0 988
Msa0173890 MtrunA17_Chr2g0314331 57.421 411 158 5 80 488 3 398 6.80e-170 484
Msa0173890 MtrunA17_Chr2g0314351 59.375 64 26 0 15 78 19 82 1.32e-21 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173890 AT2G47010.1 65.669 501 138 9 3 482 2 489 0.0 676
Msa0173890 AT2G47010.2 65.669 501 138 9 3 482 2 489 0.0 676
Msa0173890 AT2G47010.3 65.733 464 126 8 3 445 2 453 0.0 625
Msa0173890 AT1G17030.1 57.884 501 185 9 1 482 1 494 0.0 586
Msa0173890 AT4G09965.1 62.162 74 26 2 417 489 147 219 3.35e-25 103

Find 125 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAAGGCCATGGCAATTT+TGG 0.120315 1_4:+59351297 Msa0173890:CDS
CTACACCAAGCTGGAGTTTC+TGG 0.122724 1_4:-59352408 None:intergenic
GTTAACCTCACCTTAAAATT+TGG 0.172698 1_4:-59352246 None:intergenic
TCAATAAATTACAATAAATT+TGG 0.173167 1_4:+59350608 Msa0173890:five_prime_UTR
GTTCAAAAGGAACTGTATTT+AGG 0.209727 1_4:+59351251 Msa0173890:CDS
CCAGGAAGGTTTCCTTGTTT+TGG 0.219496 1_4:+59351401 Msa0173890:CDS
AGACCATCTCTTTGCATTCC+TGG 0.226808 1_4:-59350817 None:intergenic
TCTATATTGTTTATGTCTTC+TGG 0.232699 1_4:-59351218 None:intergenic
GGAAACCTTCCTGGTTTAAA+AGG 0.250546 1_4:-59351392 None:intergenic
TCCTCCTTTCTTGACATCTA+AGG 0.253365 1_4:-59352268 None:intergenic
TAATAGTGATAAGCTGAATA+AGG 0.272753 1_4:-59352513 None:intergenic
AACATGCTCCTTTGCCTTTG+AGG 0.283272 1_4:+59350674 Msa0173890:five_prime_UTR
AGTTATTGCCTCATCCTATT+TGG 0.288586 1_4:+59352622 Msa0173890:CDS
CTTCTCCTGCGAAAAGAATA+TGG 0.292504 1_4:+59353030 Msa0173890:CDS
ATTTAATGGTACTTATGATT+TGG 0.292790 1_4:+59351496 Msa0173890:CDS
CCAAAACAAGGAAACCTTCC+TGG 0.324704 1_4:-59351401 None:intergenic
CATCCTATTTGGAGTGAGTA+TGG 0.325483 1_4:+59352633 Msa0173890:CDS
TGGTGTAGCCCTACAGGTTT+AGG 0.336158 1_4:+59352423 Msa0173890:CDS
TGTGCTTGAGGATTACTATA+AGG 0.345328 1_4:-59352588 None:intergenic
GTAATGAGAGGAGGATTTAA+TGG 0.352289 1_4:+59351482 Msa0173890:CDS
GACCATCTCTTTGCATTCCT+GGG 0.357904 1_4:-59350816 None:intergenic
TGGATGGAGGGTCTAATATT+AGG 0.362383 1_4:-59350652 None:intergenic
GCATTCCCCTTGTGTCATAA+TGG 0.362536 1_4:-59351703 None:intergenic
ATAAGCTGAATAAGGGAAAT+TGG 0.363013 1_4:-59352505 None:intergenic
TTGAGAGCTGATACAGTTAG+TGG 0.369320 1_4:+59351665 Msa0173890:CDS
AAGTAGACTTTACTTCTATC+AGG 0.372180 1_4:+59352728 Msa0173890:CDS
TAACCATACTCACTCCAAAT+AGG 0.374128 1_4:-59352636 None:intergenic
TTAGATAGTGATCTATCCTT+AGG 0.389574 1_4:+59350489 Msa0173890:five_prime_UTR
TCAAAACATTCAGCTGCTCT+TGG 0.404310 1_4:-59350907 None:intergenic
GGGTTGGTGATGCAAGGACT+TGG 0.408731 1_4:+59352682 Msa0173890:CDS
GATTCTAGTTGTAGAGATAG+TGG 0.419018 1_4:+59351518 Msa0173890:CDS
CCAGCTTGGTGTAGCCCTAC+AGG 0.419351 1_4:+59352417 Msa0173890:CDS
GAAGCTTTAAAGAGATGCTT+AGG 0.420704 1_4:+59354763 Msa0173890:three_prime_UTR
ATCCAAAATTGCCATGGCCT+TGG 0.420714 1_4:-59351299 None:intergenic
TAAGAGTAGCCTTCGAAGCT+TGG 0.430314 1_4:+59350839 Msa0173890:CDS
ATATGGACATCTATTGATAC+TGG 0.433471 1_4:+59353047 Msa0173890:CDS
GGGAGAAGAAAGTTAATGTT+GGG 0.436644 1_4:+59351582 Msa0173890:CDS
TAAGGATCACAAGTACTAAC+AGG 0.438806 1_4:-59352570 None:intergenic
AACAACTTCCCATGTCTAGA+AGG 0.439967 1_4:-59352311 None:intergenic
GGAAATTATGACACTAGGTC+TGG 0.453514 1_4:+59351338 Msa0173890:CDS
TTCTAGACATGGGAAGTTGT+TGG 0.455499 1_4:+59352313 Msa0173890:CDS
TGTCCATTGATGACAGAAGA+TGG 0.460144 1_4:-59351444 None:intergenic
AATAGTGATAAGCTGAATAA+GGG 0.461907 1_4:-59352512 None:intergenic
TGGGAGAAGAAAGTTAATGT+TGG 0.466322 1_4:+59351581 Msa0173890:CDS
GTCTCCTACAGCTGAGACAT+TGG 0.469452 1_4:-59350794 None:intergenic
AGACTTCAAAGAAATATCCT+TGG 0.482604 1_4:+59351630 Msa0173890:CDS
GATACAGTTAGTGGATTCTC+TGG 0.484218 1_4:+59351674 Msa0173890:CDS
AGATCTTTATGCTGTTCAAA+AGG 0.484340 1_4:+59351238 Msa0173890:CDS
AAGATAAATCATAGAACCTA+AGG 0.488732 1_4:-59350505 None:intergenic
AGAAAGTTAATGTTGGGAGT+TGG 0.491514 1_4:+59351588 Msa0173890:CDS
TAGAAGGTAGAATTGACTCT+TGG 0.493404 1_4:-59352295 None:intergenic
CAAAACATTCAGCTGCTCTT+GGG 0.494665 1_4:-59350906 None:intergenic
GAAGAAAGTTCCTGGTAGGA+TGG 0.498355 1_4:+59354712 Msa0173890:CDS
TGAACTATCTCTTGTGCTTG+AGG 0.503738 1_4:-59352600 None:intergenic
AACCCATCTTCTGTCATCAA+TGG 0.504979 1_4:+59351441 Msa0173890:CDS
ATGGTTGGGTTGGTGATGCA+AGG 0.505505 1_4:+59352676 Msa0173890:CDS
ATGTCTTCTGGTCTCAGACC+AGG 0.512031 1_4:-59351206 None:intergenic
AAGAAAGTTCCTGGTAGGAT+GGG 0.512739 1_4:+59354713 Msa0173890:CDS
AATTACAATAAATTTGGCTA+AGG 0.516229 1_4:+59350614 Msa0173890:five_prime_UTR
TATCACTATTACTGTGCTCC+AGG 0.516398 1_4:+59352525 Msa0173890:CDS
ATAAATTTGGCTAAGGCTAG+TGG 0.517450 1_4:+59350621 Msa0173890:five_prime_UTR
TTAAAATTTGGTGACTCAAG+AGG 0.526844 1_4:-59352234 None:intergenic
TCATCTGGTGTGATATGAAA+TGG 0.531286 1_4:-59352456 None:intergenic
AAGGATAGATCACTATCTAA+AGG 0.531554 1_4:-59350486 None:intergenic
CTGTCATCAATGGACAAAGC+TGG 0.533115 1_4:+59351451 Msa0173890:CDS
CCTGTAGGGCTACACCAAGC+TGG 0.537936 1_4:-59352417 None:intergenic
CAGACCAATGTCTCAGCTGT+AGG 0.540258 1_4:+59350790 Msa0173890:CDS
ACTTGGGAACTTGATGTTGG+TGG 0.540896 1_4:+59352699 Msa0173890:CDS
TCTAAATGTTGAGCATTGCC+TGG 0.545866 1_4:-59352543 None:intergenic
GGTTGGTGATGCAAGGACTT+GGG 0.546921 1_4:+59352683 Msa0173890:CDS
TGAAGAAGAAAGTTCCTGGT+AGG 0.552225 1_4:+59354708 Msa0173890:CDS
TAATTGATCCCCATCCTACC+AGG 0.559440 1_4:-59354722 None:intergenic
AACAATGGTGCACCTTGTGA+TGG 0.559983 1_4:+59352339 Msa0173890:CDS
AGAAGTAAAGTCTACTTGCT+AGG 0.561259 1_4:-59352722 None:intergenic
GGACAATTGCCTAAACCTGT+AGG 0.561583 1_4:-59352432 None:intergenic
GTCTCAGCTGTAGGAGACCC+AGG 0.562074 1_4:+59350799 Msa0173890:CDS
AACCTTCCTGGTTTAAAAGG+AGG 0.568580 1_4:-59351389 None:intergenic
GACAATTGCCTAAACCTGTA+GGG 0.570433 1_4:-59352431 None:intergenic
AAAGTTAACAAACTTGGTGT+AGG 0.571771 1_4:+59351173 Msa0173890:CDS
CAAAGGAGCATGTTGGATGG+AGG 0.572196 1_4:-59350665 None:intergenic
GTCCATTGATGACAGAAGAT+GGG 0.572666 1_4:-59351443 None:intergenic
TTAACCTTAGATGTCAAGAA+AGG 0.573621 1_4:+59352264 Msa0173890:CDS
AGAAAGTTCCTGGTAGGATG+GGG 0.573754 1_4:+59354714 Msa0173890:CDS
TGGTCAAGAAGCTCCTCACA+TGG 0.581869 1_4:+59350879 Msa0173890:CDS
AGGCAAAGGAGCATGTTGGA+TGG 0.582816 1_4:-59350668 None:intergenic
TTAGATGTCAAGAAAGGAGG+AGG 0.583402 1_4:+59352270 Msa0173890:CDS
GATGGGGATCAATTAAGAGA+AGG 0.584478 1_4:+59354730 Msa0173890:exon
ATTGATGACAGAAGATGGGT+TGG 0.585027 1_4:-59351439 None:intergenic
AAAGGAGCATGTTGGATGGA+GGG 0.587360 1_4:-59350664 None:intergenic
TCAATTCTACCTTCTAGACA+TGG 0.588399 1_4:+59352302 Msa0173890:CDS
GCTCTTGGGCTACCCATGTG+AGG 0.591146 1_4:-59350892 None:intergenic
AGGACTTGGGAACTTGATGT+TGG 0.596427 1_4:+59352696 Msa0173890:CDS
GACCCAGGAATGCAAAGAGA+TGG 0.596905 1_4:+59350814 Msa0173890:CDS
TTAAAGACACACCAAGGCCA+TGG 0.597630 1_4:+59351288 Msa0173890:CDS
CTGGAAGGTGATGTAATGAG+AGG 0.599493 1_4:+59351470 Msa0173890:CDS
ATGCATCCTGTTCCAAAACA+AGG 0.602446 1_4:-59351413 None:intergenic
TCAAAGGCAAAGGAGCATGT+TGG 0.605448 1_4:-59350672 None:intergenic
TACTCACTCCAAATAGGATG+AGG 0.606279 1_4:-59352630 None:intergenic
AAAATGGAAATTATGACACT+AGG 0.613148 1_4:+59351333 Msa0173890:CDS
TCAATCCAGAAACTCCAGCT+TGG 0.614056 1_4:+59352403 Msa0173890:CDS
GGTGTAGGAGAGTCATTACC+TGG 0.615130 1_4:+59351188 Msa0173890:CDS
TCTGGTTTATGTCCTCAAGA+TGG 0.622613 1_4:+59351356 Msa0173890:CDS
CATCAATGGACAAAGCTGGA+AGG 0.623235 1_4:+59351455 Msa0173890:CDS
ACAGTTAGTGGATTCTCTGG+TGG 0.623686 1_4:+59351677 Msa0173890:CDS
ATTATCATCCAAAATTGCCA+TGG 0.624144 1_4:-59351305 None:intergenic
ATTTGTTAGCGACAAAGATG+AGG 0.624187 1_4:+59353079 Msa0173890:CDS
ACCTTAGATGTCAAGAAAGG+AGG 0.624457 1_4:+59352267 Msa0173890:CDS
GAAGGTGATGTAATGAGAGG+AGG 0.628897 1_4:+59351473 Msa0173890:CDS
ATGAGTTGTGGACACAAGAG+AGG 0.634235 1_4:-59350764 None:intergenic
TGTTAGCGACAAAGATGAGG+TGG 0.634773 1_4:+59353082 Msa0173890:CDS
GTGGTTACCATTATGACACA+AGG 0.639125 1_4:+59351696 Msa0173890:CDS
AGCTGAATAAGGGAAATTGG+CGG 0.640495 1_4:-59352502 None:intergenic
GCCAGGTTCTCTGATTCACA+AGG 0.645424 1_4:+59351142 Msa0173890:intron
CAATTCTACCTTCTAGACAT+GGG 0.645465 1_4:+59352303 Msa0173890:CDS
CTCAAGTAAAGCATCAACCA+AGG 0.657316 1_4:-59351647 None:intergenic
ATTTGGCTAAGGCTAGTGGA+AGG 0.676268 1_4:+59350625 Msa0173890:five_prime_UTR
TCTGGTGTGATATGAAATGG+TGG 0.678495 1_4:-59352453 None:intergenic
GGTTACCATTATGACACAAG+GGG 0.678691 1_4:+59351698 Msa0173890:CDS
GGTCAAGAAGCTCCTCACAT+GGG 0.681692 1_4:+59350880 Msa0173890:CDS
GTTAGTACATCTCCATCACA+AGG 0.685016 1_4:-59352351 None:intergenic
ACAAAGATGAGGTGGCAGAG+TGG 0.689156 1_4:+59353090 Msa0173890:CDS
TGGTTACCATTATGACACAA+GGG 0.690726 1_4:+59351697 Msa0173890:CDS
ATTGGTCTGAGAATGAGTTG+TGG 0.699603 1_4:-59350776 None:intergenic
GGAAGTTGTTGGAAGAACAA+TGG 0.714098 1_4:+59352324 Msa0173890:CDS
GTGAAGTTAAAGACACACCA+AGG 0.745244 1_4:+59351282 Msa0173890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATAAATTACAATAAATT+TGG + chr1_4:59350608-59350627 Msa0173890:five_prime_UTR 10.0%
!!! TAAAAATAGAAGAAATTTTG+AGG - chr1_4:59350988-59351007 None:intergenic 15.0%
!! CTCAACTTTAAATAAAATTT+AGG + chr1_4:59351034-59351053 Msa0173890:intron 15.0%
!! AAAATGACTGATTATTAATT+TGG + chr1_4:59352171-59352190 Msa0173890:intron 15.0%
!!! CAAATTTGTATTTTATGTTA+TGG + chr1_4:59352891-59352910 Msa0173890:intron 15.0%
!! TAAAAGTCTAAAAACATAAA+TGG - chr1_4:59353680-59353699 None:intergenic 15.0%
!! AAAATGTTTGATATAAATTG+TGG + chr1_4:59354423-59354442 Msa0173890:intron 15.0%
!! AAATGTTTGATATAAATTGT+GGG + chr1_4:59354424-59354443 Msa0173890:intron 15.0%
!! TAATGCTTCAATATTAAAAT+CGG + chr1_4:59354645-59354664 Msa0173890:intron 15.0%
!! AATTACAATAAATTTGGCTA+AGG + chr1_4:59350614-59350633 Msa0173890:five_prime_UTR 20.0%
!! AGGACTAAAATGAAATATTA+GGG - chr1_4:59350968-59350987 None:intergenic 20.0%
!! ATTTAATGGTACTTATGATT+TGG + chr1_4:59351496-59351515 Msa0173890:CDS 20.0%
!!! TAACAATCTTTCATTTTATG+AGG + chr1_4:59351553-59351572 Msa0173890:CDS 20.0%
!!! GAATTGAAAATTTGAAACAT+AGG - chr1_4:59351764-59351783 None:intergenic 20.0%
!! AATTAAAATTGAACAGAACA+AGG - chr1_4:59351858-59351877 None:intergenic 20.0%
!!! TTCCATTAATGTATTTTGTT+TGG + chr1_4:59351877-59351896 Msa0173890:intron 20.0%
!!! TTTGGACTAAACAAAAATTT+TGG + chr1_4:59351895-59351914 Msa0173890:intron 20.0%
!!! ATATCTTTTGTTAGTTAGAT+TGG - chr1_4:59352048-59352067 None:intergenic 20.0%
!!! TTAGTCATCAAACTATTTTT+TGG - chr1_4:59353149-59353168 None:intergenic 20.0%
!!! TAAAGAGTAAACTAAACTTT+TGG + chr1_4:59353207-59353226 Msa0173890:intron 20.0%
!!! AAAGAGTAAACTAAACTTTT+GGG + chr1_4:59353208-59353227 Msa0173890:intron 20.0%
!!! GTTTTTAGACTTTTAGTAAA+AGG + chr1_4:59353685-59353704 Msa0173890:intron 20.0%
!! GATTGAAAAGAATAGTTTAT+AGG + chr1_4:59353998-59354017 Msa0173890:intron 20.0%
!! ATACAATGCTTATATAAAGT+TGG + chr1_4:59354107-59354126 Msa0173890:intron 20.0%
!! TACAATGCTTATATAAAGTT+GGG + chr1_4:59354108-59354127 Msa0173890:intron 20.0%
! AAGATAAATCATAGAACCTA+AGG - chr1_4:59350508-59350527 None:intergenic 25.0%
! GAGGACTAAAATGAAATATT+AGG - chr1_4:59350969-59350988 None:intergenic 25.0%
!! TTTATTTAAAGTTGAGAACC+TGG - chr1_4:59351030-59351049 None:intergenic 25.0%
! ACAGAAAAAGTTAACAAACT+TGG + chr1_4:59351167-59351186 Msa0173890:CDS 25.0%
! TCTATATTGTTTATGTCTTC+TGG - chr1_4:59351221-59351240 None:intergenic 25.0%
!! TGGATGATAATGCTAAAAAA+TGG + chr1_4:59351317-59351336 Msa0173890:CDS 25.0%
! AAAATGGAAATTATGACACT+AGG + chr1_4:59351333-59351352 Msa0173890:CDS 25.0%
! GTCCAAACAAAATACATTAA+TGG - chr1_4:59351882-59351901 None:intergenic 25.0%
!!! TTTTAGTCTTTAAATGTGTG+AGG - chr1_4:59352155-59352174 None:intergenic 25.0%
! GGCTGAAATTTAAACTAAAA+TGG - chr1_4:59352216-59352235 None:intergenic 25.0%
! AATAGTGATAAGCTGAATAA+GGG - chr1_4:59352515-59352534 None:intergenic 25.0%
! TAATAGTGATAAGCTGAATA+AGG - chr1_4:59352516-59352535 None:intergenic 25.0%
! TATGGTTATCCCATTAAAAA+AGG + chr1_4:59352651-59352670 Msa0173890:CDS 25.0%
! TTCAATTACCACTTTACTAA+TGG + chr1_4:59352816-59352835 Msa0173890:intron 25.0%
! ATAAGTTTCCATTAGTAAAG+TGG - chr1_4:59352827-59352846 None:intergenic 25.0%
! TTTATGTTATGGCGAAATTT+AGG + chr1_4:59352902-59352921 Msa0173890:intron 25.0%
!! ACATGTAGTTTTTGTTACTA+TGG + chr1_4:59352951-59352970 Msa0173890:intron 25.0%
!! AAACATACATTTTATTGTGC+AGG + chr1_4:59352998-59353017 Msa0173890:intron 25.0%
!! TTTGATGACTAATGTTTGTT+AGG + chr1_4:59353157-59353176 Msa0173890:intron 25.0%
! TATAAAATAGATTGCTAGCA+TGG - chr1_4:59353474-59353493 None:intergenic 25.0%
! TGATAAAAAAAGACCACAAA+GGG - chr1_4:59353652-59353671 None:intergenic 25.0%
!!! TTTGTGGTCTTTTTTTATCA+CGG + chr1_4:59353652-59353671 Msa0173890:intron 25.0%
!! ACAAGATACATGTTTTTCAT+TGG + chr1_4:59353847-59353866 Msa0173890:intron 25.0%
! AGCATTGTATGACATTATAA+TGG - chr1_4:59354097-59354116 None:intergenic 25.0%
!! CAAAATTCGCTAATTTTATG+AGG - chr1_4:59354151-59354170 None:intergenic 25.0%
!! CTCATAAAATTAGCGAATTT+TGG + chr1_4:59354149-59354168 Msa0173890:intron 25.0%
!!! AAACGGTGGATTTTTTTATA+GGG - chr1_4:59354182-59354201 None:intergenic 25.0%
!!! AAAACGGTGGATTTTTTTAT+AGG - chr1_4:59354183-59354202 None:intergenic 25.0%
! TCAACAGTTAGTTAACTTAA+CGG - chr1_4:59354245-59354264 None:intergenic 25.0%
! ATTAAAACTGACCTTTAAAC+AGG - chr1_4:59354629-59354648 None:intergenic 25.0%
AAGGATAGATCACTATCTAA+AGG - chr1_4:59350489-59350508 None:intergenic 30.0%
TTAGATAGTGATCTATCCTT+AGG + chr1_4:59350489-59350508 Msa0173890:five_prime_UTR 30.0%
! TGGAATTTTTGCAATGAAGT+TGG + chr1_4:59350859-59350878 Msa0173890:CDS 30.0%
!!! GAATGTTTTGATCTTTCACA+AGG + chr1_4:59350919-59350938 Msa0173890:CDS 30.0%
!!! TTTTTTGTTGTTGTATGACC+AGG + chr1_4:59351009-59351028 Msa0173890:intron 30.0%
!! AAAGTTAACAAACTTGGTGT+AGG + chr1_4:59351173-59351192 Msa0173890:CDS 30.0%
AGATCTTTATGCTGTTCAAA+AGG + chr1_4:59351238-59351257 Msa0173890:CDS 30.0%
GTTCAAAAGGAACTGTATTT+AGG + chr1_4:59351251-59351270 Msa0173890:CDS 30.0%
ATTATCATCCAAAATTGCCA+TGG - chr1_4:59351308-59351327 None:intergenic 30.0%
! CAATCTTTCATTTTATGAGG+TGG + chr1_4:59351556-59351575 Msa0173890:CDS 30.0%
! TTTCATTTTATGAGGTGGTT+TGG + chr1_4:59351561-59351580 Msa0173890:CDS 30.0%
! TTCATTTTATGAGGTGGTTT+GGG + chr1_4:59351562-59351581 Msa0173890:CDS 30.0%
AGACTTCAAAGAAATATCCT+TGG + chr1_4:59351630-59351649 Msa0173890:CDS 30.0%
! TTTGAAACATAGGATTCTGA+AGG - chr1_4:59351754-59351773 None:intergenic 30.0%
AAAATTGAACAGAACAAGGA+GGG - chr1_4:59351854-59351873 None:intergenic 30.0%
TAAAATTGAACAGAACAAGG+AGG - chr1_4:59351855-59351874 None:intergenic 30.0%
GATACATTCAGAAACTAAAG+TGG - chr1_4:59351944-59351963 None:intergenic 30.0%
! TTAAAATTTGGTGACTCAAG+AGG - chr1_4:59352237-59352256 None:intergenic 30.0%
! TCTTGAGTCACCAAATTTTA+AGG + chr1_4:59352236-59352255 Msa0173890:CDS 30.0%
GTTAACCTCACCTTAAAATT+TGG - chr1_4:59352249-59352268 None:intergenic 30.0%
TTAACCTTAGATGTCAAGAA+AGG + chr1_4:59352264-59352283 Msa0173890:CDS 30.0%
! CTGAATATCTTTTTGTCATC+TGG - chr1_4:59352474-59352493 None:intergenic 30.0%
ATAAGCTGAATAAGGGAAAT+TGG - chr1_4:59352508-59352527 None:intergenic 30.0%
TATCCCATTAAAAAAGGTGA+TGG + chr1_4:59352657-59352676 Msa0173890:CDS 30.0%
!!! CAACCATCACCTTTTTTAAT+GGG - chr1_4:59352663-59352682 None:intergenic 30.0%
! CATTAAAAAAGGTGATGGTT+GGG + chr1_4:59352662-59352681 Msa0173890:CDS 30.0%
AAGTAGACTTTACTTCTATC+AGG + chr1_4:59352728-59352747 Msa0173890:CDS 30.0%
! TTCAATTACCACTCTACTTT+TGG + chr1_4:59352758-59352777 Msa0173890:intron 30.0%
ATAAGTTTCCAAAAGTAGAG+TGG - chr1_4:59352769-59352788 None:intergenic 30.0%
ATATGGACATCTATTGATAC+TGG + chr1_4:59353047-59353066 Msa0173890:CDS 30.0%
TAGGTGGAAAGAAAGAAAAT+AGG + chr1_4:59353176-59353195 Msa0173890:intron 30.0%
!!! ACTAAACTTTTGGGATTAGA+TGG + chr1_4:59353217-59353236 Msa0173890:intron 30.0%
ATTTAGAAACGTGAACTTTG+GGG - chr1_4:59353244-59353263 None:intergenic 30.0%
CATTTAGAAACGTGAACTTT+GGG - chr1_4:59353245-59353264 None:intergenic 30.0%
ATGATCCGATTGTGATAATT+AGG - chr1_4:59353291-59353310 None:intergenic 30.0%
AATTATCACAATCGGATCAT+AGG + chr1_4:59353291-59353310 Msa0173890:intron 30.0%
TTTACCATACTTTATTCCTC+AGG - chr1_4:59353324-59353343 None:intergenic 30.0%
GTGATAAAAAAAGACCACAA+AGG - chr1_4:59353653-59353672 None:intergenic 30.0%
!!! TTGTGGTCTTTTTTTATCAC+GGG + chr1_4:59353653-59353672 Msa0173890:intron 30.0%
!! ATTGGTGTACAATTTTTGAG+TGG + chr1_4:59353741-59353760 Msa0173890:intron 30.0%
!!! AACGGTGGATTTTTTTATAG+GGG - chr1_4:59354181-59354200 None:intergenic 30.0%
AAATTAAGTAGGGACGAAAA+CGG - chr1_4:59354199-59354218 None:intergenic 30.0%
GGTGACTGAAAAATTAAGTA+GGG - chr1_4:59354209-59354228 None:intergenic 30.0%
CAACAGTTAGTTAACTTAAC+GGG - chr1_4:59354244-59354263 None:intergenic 30.0%
! GTTAACTAACTGTTGACTAA+CGG + chr1_4:59354249-59354268 Msa0173890:intron 30.0%
! TATTTTACTGAATGCTGATG+TGG - chr1_4:59354333-59354352 None:intergenic 30.0%
TGGTTTCTAAATCAGATCTA+GGG - chr1_4:59354463-59354482 None:intergenic 30.0%
TCTTCAAACACTTTGATCTA+GGG - chr1_4:59354553-59354572 None:intergenic 30.0%
ATAAATTTGGCTAAGGCTAG+TGG + chr1_4:59350621-59350640 Msa0173890:five_prime_UTR 35.0%
!!! TCTTTTTTCCTCAAAGGCAA+AGG - chr1_4:59350685-59350704 None:intergenic 35.0%
! TTTGCCTTTGAGGAAAAAAG+AGG + chr1_4:59350684-59350703 Msa0173890:five_prime_UTR 35.0%
!!! ATTGCCTCTTTTTTCCTCAA+AGG - chr1_4:59350691-59350710 None:intergenic 35.0%
TTTGAGGAAAAAAGAGGCAA+TGG + chr1_4:59350690-59350709 Msa0173890:exon 35.0%
GTAATGAGAGGAGGATTTAA+TGG + chr1_4:59351482-59351501 Msa0173890:CDS 35.0%
! GATTCTAGTTGTAGAGATAG+TGG + chr1_4:59351518-59351537 Msa0173890:CDS 35.0%
TGGGAGAAGAAAGTTAATGT+TGG + chr1_4:59351581-59351600 Msa0173890:CDS 35.0%
GGGAGAAGAAAGTTAATGTT+GGG + chr1_4:59351582-59351601 Msa0173890:CDS 35.0%
AGAAAGTTAATGTTGGGAGT+TGG + chr1_4:59351588-59351607 Msa0173890:CDS 35.0%
TGGTTACCATTATGACACAA+GGG + chr1_4:59351697-59351716 Msa0173890:CDS 35.0%
! ACATAGGATTCTGAAGGAAA+TGG - chr1_4:59351748-59351767 None:intergenic 35.0%
CACACTTCGAAATGTTTATG+TGG - chr1_4:59351971-59351990 None:intergenic 35.0%
!!! AGTCACCAAATTTTAAGGTG+AGG + chr1_4:59352241-59352260 Msa0173890:CDS 35.0%
! TAGAAGGTAGAATTGACTCT+TGG - chr1_4:59352298-59352317 None:intergenic 35.0%
TCAATTCTACCTTCTAGACA+TGG + chr1_4:59352302-59352321 Msa0173890:CDS 35.0%
CAATTCTACCTTCTAGACAT+GGG + chr1_4:59352303-59352322 Msa0173890:CDS 35.0%
TCATCTGGTGTGATATGAAA+TGG - chr1_4:59352459-59352478 None:intergenic 35.0%
TAAGGATCACAAGTACTAAC+AGG - chr1_4:59352573-59352592 None:intergenic 35.0%
TGTGCTTGAGGATTACTATA+AGG - chr1_4:59352591-59352610 None:intergenic 35.0%
AGTTATTGCCTCATCCTATT+TGG + chr1_4:59352622-59352641 Msa0173890:CDS 35.0%
TAACCATACTCACTCCAAAT+AGG - chr1_4:59352639-59352658 None:intergenic 35.0%
!!! CCAACCATCACCTTTTTTAA+TGG - chr1_4:59352664-59352683 None:intergenic 35.0%
! CCATTAAAAAAGGTGATGGT+TGG + chr1_4:59352661-59352680 Msa0173890:CDS 35.0%
AGAAGTAAAGTCTACTTGCT+AGG - chr1_4:59352725-59352744 None:intergenic 35.0%
! ACATTTTATTGTGCAGGATC+CGG + chr1_4:59353004-59353023 Msa0173890:intron 35.0%
! ATTTGTTAGCGACAAAGATG+AGG + chr1_4:59353079-59353098 Msa0173890:CDS 35.0%
! GATGACTAATGTTTGTTAGG+TGG + chr1_4:59353160-59353179 Msa0173890:intron 35.0%
GCATTTAGAAACGTGAACTT+TGG - chr1_4:59353246-59353265 None:intergenic 35.0%
CTCCTCCTAATTATCACAAT+CGG + chr1_4:59353283-59353302 Msa0173890:intron 35.0%
ATCCGATTGTGATAATTAGG+AGG - chr1_4:59353288-59353307 None:intergenic 35.0%
CATACTTTATTCCTCAGGTA+AGG - chr1_4:59353319-59353338 None:intergenic 35.0%
CTTACCTGAGGAATAAAGTA+TGG + chr1_4:59353317-59353336 Msa0173890:intron 35.0%
GAAATATATATCCGCTTGAC+CGG - chr1_4:59353448-59353467 None:intergenic 35.0%
TGAAGTATGACTTAAACGCA+AGG + chr1_4:59353526-59353545 Msa0173890:intron 35.0%
! CTCGAATAAGGTACTCAATA+AGG - chr1_4:59353559-59353578 None:intergenic 35.0%
AAAAAAGACCACAAAGGGAT+AGG - chr1_4:59353647-59353666 None:intergenic 35.0%
TACACCAATGTCCTGATATA+TGG - chr1_4:59353730-59353749 None:intergenic 35.0%
!!! TACAATTTTTGAGTGGCAAC+TGG + chr1_4:59353748-59353767 Msa0173890:intron 35.0%
CACTTACACACAAACGAATT+AGG - chr1_4:59353801-59353820 None:intergenic 35.0%
TGCAGTAGTTAGTAATACAC+CGG + chr1_4:59353870-59353889 Msa0173890:intron 35.0%
GAAGGAACAAACAAACAATC+CGG - chr1_4:59353892-59353911 None:intergenic 35.0%
AGTCATAACACAACACTCTT+TGG - chr1_4:59353921-59353940 None:intergenic 35.0%
CGGTGACTGAAAAATTAAGT+AGG - chr1_4:59354210-59354229 None:intergenic 35.0%
AGTTAGTTAACTTAACGGGA+GGG - chr1_4:59354240-59354259 None:intergenic 35.0%
! ACCTGGATTTTTAAATGACG+TGG + chr1_4:59354291-59354310 Msa0173890:intron 35.0%
TCCACGTCATTTAAAAATCC+AGG - chr1_4:59354295-59354314 None:intergenic 35.0%
CTGGTTTCTAAATCAGATCT+AGG - chr1_4:59354464-59354483 None:intergenic 35.0%
GTCTTCAAACACTTTGATCT+AGG - chr1_4:59354554-59354573 None:intergenic 35.0%
!!! GTTTTGAAGAAGAAAGTTCC+TGG + chr1_4:59354704-59354723 Msa0173890:CDS 35.0%
!! GAAGCTTTAAAGAGATGCTT+AGG + chr1_4:59354763-59354782 Msa0173890:three_prime_UTR 35.0%
TGGATGGAGGGTCTAATATT+AGG - chr1_4:59350655-59350674 None:intergenic 40.0%
! ATTGGTCTGAGAATGAGTTG+TGG - chr1_4:59350779-59350798 None:intergenic 40.0%
GCAAAAATTCCAAGCTTCGA+AGG - chr1_4:59350851-59350870 None:intergenic 40.0%
CAAAACATTCAGCTGCTCTT+GGG - chr1_4:59350909-59350928 None:intergenic 40.0%
TCAAAACATTCAGCTGCTCT+TGG - chr1_4:59350910-59350929 None:intergenic 40.0%
ACAACGGTTCAAAATCACCT+CGG - chr1_4:59351116-59351135 None:intergenic 40.0%
AGAACCTGGCAATACAACAA+CGG - chr1_4:59351132-59351151 None:intergenic 40.0%
GTGAAGTTAAAGACACACCA+AGG + chr1_4:59351282-59351301 Msa0173890:CDS 40.0%
GGAAATTATGACACTAGGTC+TGG + chr1_4:59351338-59351357 Msa0173890:CDS 40.0%
! TCTGGTTTATGTCCTCAAGA+TGG + chr1_4:59351356-59351375 Msa0173890:CDS 40.0%
! GGTACTCTTTTACCATCTTG+AGG - chr1_4:59351371-59351390 None:intergenic 40.0%
!! AGAGTACCTCCTTTTAAACC+AGG + chr1_4:59351383-59351402 Msa0173890:CDS 40.0%
! TACCTCCTTTTAAACCAGGA+AGG + chr1_4:59351387-59351406 Msa0173890:CDS 40.0%
AACCTTCCTGGTTTAAAAGG+AGG - chr1_4:59351392-59351411 None:intergenic 40.0%
GGAAACCTTCCTGGTTTAAA+AGG - chr1_4:59351395-59351414 None:intergenic 40.0%
!!! AGGTTTCCTTGTTTTGGAAC+AGG + chr1_4:59351407-59351426 Msa0173890:CDS 40.0%
ATGCATCCTGTTCCAAAACA+AGG - chr1_4:59351416-59351435 None:intergenic 40.0%
! ATTGATGACAGAAGATGGGT+TGG - chr1_4:59351442-59351461 None:intergenic 40.0%
AACCCATCTTCTGTCATCAA+TGG + chr1_4:59351441-59351460 Msa0173890:CDS 40.0%
! GTCCATTGATGACAGAAGAT+GGG - chr1_4:59351446-59351465 None:intergenic 40.0%
! TGTCCATTGATGACAGAAGA+TGG - chr1_4:59351447-59351466 None:intergenic 40.0%
! CTCAAGTAAAGCATCAACCA+AGG - chr1_4:59351650-59351669 None:intergenic 40.0%
TTGAGAGCTGATACAGTTAG+TGG + chr1_4:59351665-59351684 Msa0173890:CDS 40.0%
!! GATACAGTTAGTGGATTCTC+TGG + chr1_4:59351674-59351693 Msa0173890:CDS 40.0%
GTGGTTACCATTATGACACA+AGG + chr1_4:59351696-59351715 Msa0173890:CDS 40.0%
GGTTACCATTATGACACAAG+GGG + chr1_4:59351698-59351717 Msa0173890:CDS 40.0%
GGCAAACACATCACACATTT+AGG - chr1_4:59351923-59351942 None:intergenic 40.0%
GTGTCTCTTGTTAGTCACTT+TGG - chr1_4:59352080-59352099 None:intergenic 40.0%
ACCTTAGATGTCAAGAAAGG+AGG + chr1_4:59352267-59352286 Msa0173890:CDS 40.0%
TCCTCCTTTCTTGACATCTA+AGG - chr1_4:59352271-59352290 None:intergenic 40.0%
TTAGATGTCAAGAAAGGAGG+AGG + chr1_4:59352270-59352289 Msa0173890:CDS 40.0%
AACAACTTCCCATGTCTAGA+AGG - chr1_4:59352314-59352333 None:intergenic 40.0%
TTCTAGACATGGGAAGTTGT+TGG + chr1_4:59352313-59352332 Msa0173890:CDS 40.0%
GGAAGTTGTTGGAAGAACAA+TGG + chr1_4:59352324-59352343 Msa0173890:CDS 40.0%
GTTAGTACATCTCCATCACA+AGG - chr1_4:59352354-59352373 None:intergenic 40.0%
GACAATTGCCTAAACCTGTA+GGG - chr1_4:59352434-59352453 None:intergenic 40.0%
TCTGGTGTGATATGAAATGG+TGG - chr1_4:59352456-59352475 None:intergenic 40.0%
AGCTGAATAAGGGAAATTGG+CGG - chr1_4:59352505-59352524 None:intergenic 40.0%
TATCACTATTACTGTGCTCC+AGG + chr1_4:59352525-59352544 Msa0173890:CDS 40.0%
! TCTAAATGTTGAGCATTGCC+TGG - chr1_4:59352546-59352565 None:intergenic 40.0%
TGAACTATCTCTTGTGCTTG+AGG - chr1_4:59352603-59352622 None:intergenic 40.0%
TACTCACTCCAAATAGGATG+AGG - chr1_4:59352633-59352652 None:intergenic 40.0%
! CATCCTATTTGGAGTGAGTA+TGG + chr1_4:59352633-59352652 Msa0173890:CDS 40.0%
! AAAAAAGGTGATGGTTGGGT+TGG + chr1_4:59352666-59352685 Msa0173890:CDS 40.0%
ATGGCGAAATTTAGGTGACA+CGG + chr1_4:59352910-59352929 Msa0173890:intron 40.0%
! CATTTTATTGTGCAGGATCC+GGG + chr1_4:59353005-59353024 Msa0173890:intron 40.0%
CTTCTCCTGCGAAAAGAATA+TGG + chr1_4:59353030-59353049 Msa0173890:CDS 40.0%
! GATGTCCATATTCTTTTCGC+AGG - chr1_4:59353038-59353057 None:intergenic 40.0%
CCACACAAATTCATCACATG+AGG - chr1_4:59353412-59353431 None:intergenic 40.0%
CCTCATGTGATGAATTTGTG+TGG + chr1_4:59353409-59353428 Msa0173890:intron 40.0%
GTGTGGTTATGAGCATATTC+CGG + chr1_4:59353426-59353445 Msa0173890:intron 40.0%
ACTCGATAATGCTTTGTGGA+AGG - chr1_4:59353597-59353616 None:intergenic 40.0%
AGGTACTCGATAATGCTTTG+TGG - chr1_4:59353601-59353620 None:intergenic 40.0%
TATCGAGTACCTTAATCGCA+AGG + chr1_4:59353609-59353628 Msa0173890:intron 40.0%
! AAAGGCACGTATCGTTTGTT+CGG + chr1_4:59353703-59353722 Msa0173890:intron 40.0%
GTTTGTTCGGACCATATATC+AGG + chr1_4:59353716-59353735 Msa0173890:intron 40.0%
CAGTTAGTTAACTTAACGGG+AGG - chr1_4:59354241-59354260 None:intergenic 40.0%
TAGGGTGGAGAATGGAATAT+TGG - chr1_4:59354535-59354554 None:intergenic 40.0%
TCAAACACTTTGATCTAGGG+TGG - chr1_4:59354550-59354569 None:intergenic 40.0%
AAGGTTGGATATCGTAGAAG+TGG + chr1_4:59354602-59354621 Msa0173890:intron 40.0%
GTAGAAGTGGTCCTGTTTAA+AGG + chr1_4:59354615-59354634 Msa0173890:intron 40.0%
AAAATCGGAACTGTAGAACG+TGG + chr1_4:59354660-59354679 Msa0173890:intron 40.0%
! CAAAACTTTTCCCTGCAAAC+AGG - chr1_4:59354690-59354709 None:intergenic 40.0%
TGAAGAAGAAAGTTCCTGGT+AGG + chr1_4:59354708-59354727 Msa0173890:CDS 40.0%
AAGAAAGTTCCTGGTAGGAT+GGG + chr1_4:59354713-59354732 Msa0173890:CDS 40.0%
GATGGGGATCAATTAAGAGA+AGG + chr1_4:59354730-59354749 Msa0173890:exon 40.0%
ATTTGGCTAAGGCTAGTGGA+AGG + chr1_4:59350625-59350644 Msa0173890:five_prime_UTR 45.0%
! AAAGGAGCATGTTGGATGGA+GGG - chr1_4:59350667-59350686 None:intergenic 45.0%
! TCAAAGGCAAAGGAGCATGT+TGG - chr1_4:59350675-59350694 None:intergenic 45.0%
AACATGCTCCTTTGCCTTTG+AGG + chr1_4:59350674-59350693 Msa0173890:five_prime_UTR 45.0%
ATGAGTTGTGGACACAAGAG+AGG - chr1_4:59350767-59350786 None:intergenic 45.0%
GACCATCTCTTTGCATTCCT+GGG - chr1_4:59350819-59350838 None:intergenic 45.0%
AGACCATCTCTTTGCATTCC+TGG - chr1_4:59350820-59350839 None:intergenic 45.0%
TAAGAGTAGCCTTCGAAGCT+TGG + chr1_4:59350839-59350858 Msa0173890:CDS 45.0%
! TCATTTTACAACTGTCCCCG+AGG + chr1_4:59351096-59351115 Msa0173890:intron 45.0%
AACGGTTCAAAATCACCTCG+GGG - chr1_4:59351114-59351133 None:intergenic 45.0%
CAACGGTTCAAAATCACCTC+GGG - chr1_4:59351115-59351134 None:intergenic 45.0%
TGAACCGTTGTTGTATTGCC+AGG + chr1_4:59351125-59351144 Msa0173890:intron 45.0%
ACCTTGTGAATCAGAGAACC+TGG - chr1_4:59351146-59351165 None:intergenic 45.0%
TTAAAGACACACCAAGGCCA+TGG + chr1_4:59351288-59351307 Msa0173890:CDS 45.0%
ATCCAAAATTGCCATGGCCT+TGG - chr1_4:59351302-59351321 None:intergenic 45.0%
CCAAAACAAGGAAACCTTCC+TGG - chr1_4:59351404-59351423 None:intergenic 45.0%
!! CCAGGAAGGTTTCCTTGTTT+TGG + chr1_4:59351401-59351420 Msa0173890:CDS 45.0%
CTGTCATCAATGGACAAAGC+TGG + chr1_4:59351451-59351470 Msa0173890:CDS 45.0%
CATCAATGGACAAAGCTGGA+AGG + chr1_4:59351455-59351474 Msa0173890:CDS 45.0%
CTGGAAGGTGATGTAATGAG+AGG + chr1_4:59351470-59351489 Msa0173890:CDS 45.0%
GAAGGTGATGTAATGAGAGG+AGG + chr1_4:59351473-59351492 Msa0173890:CDS 45.0%
!! ACAGTTAGTGGATTCTCTGG+TGG + chr1_4:59351677-59351696 Msa0173890:CDS 45.0%
GCATTCCCCTTGTGTCATAA+TGG - chr1_4:59351706-59351725 None:intergenic 45.0%
AACAATGGTGCACCTTGTGA+TGG + chr1_4:59352339-59352358 Msa0173890:CDS 45.0%
TCAATCCAGAAACTCCAGCT+TGG + chr1_4:59352403-59352422 Msa0173890:CDS 45.0%
GGACAATTGCCTAAACCTGT+AGG - chr1_4:59352435-59352454 None:intergenic 45.0%
AGGACTTGGGAACTTGATGT+TGG + chr1_4:59352696-59352715 Msa0173890:CDS 45.0%
ACTTGGGAACTTGATGTTGG+TGG + chr1_4:59352699-59352718 Msa0173890:CDS 45.0%
TGGCGAAATTTAGGTGACAC+GGG + chr1_4:59352911-59352930 Msa0173890:intron 45.0%
TGTTAGCGACAAAGATGAGG+TGG + chr1_4:59353082-59353101 Msa0173890:CDS 45.0%
GATCATAGGATCCTTACCTG+AGG + chr1_4:59353305-59353324 Msa0173890:intron 45.0%
ATGAGCATATTCCGGTCAAG+CGG + chr1_4:59353434-59353453 Msa0173890:intron 45.0%
TACCTTATTCGAGACTCGAG+AGG + chr1_4:59353566-59353585 Msa0173890:intron 45.0%
TACCTCTCGAGTCTCGAATA+AGG - chr1_4:59353571-59353590 None:intergenic 45.0%
AGCTTCAAGCCTTGCGATTA+AGG - chr1_4:59353621-59353640 None:intergenic 45.0%
TAATCGCAAGGCTTGAAGCT+TGG + chr1_4:59353621-59353640 Msa0173890:intron 45.0%
CGGACCATATATCAGGACAT+TGG + chr1_4:59353723-59353742 Msa0173890:intron 45.0%
!!! TTTTTGAGTGGCAACTGGCA+AGG + chr1_4:59353753-59353772 Msa0173890:intron 45.0%
!! TTTTGAGTGGCAACTGGCAA+GGG + chr1_4:59353754-59353773 Msa0173890:intron 45.0%
!! AACACTCTTTGGCTCTAGGA+AGG - chr1_4:59353910-59353929 None:intergenic 45.0%
!! ACACAACACTCTTTGGCTCT+AGG - chr1_4:59353914-59353933 None:intergenic 45.0%
TTAAGTAGGGACGAAAACGG+TGG - chr1_4:59354196-59354215 None:intergenic 45.0%
TTGACTAACGGAATGCCACT+TGG + chr1_4:59354261-59354280 Msa0173890:intron 45.0%
GCTGATGTGGCATGCTTATA+TGG - chr1_4:59354320-59354339 None:intergenic 45.0%
CAGATGAGAGTGAACAAGAC+TGG - chr1_4:59354483-59354502 None:intergenic 45.0%
! CTTTGATCTAGGGTGGAGAA+TGG - chr1_4:59354543-59354562 None:intergenic 45.0%
TCTGTTTGCACGTGTATCGT+CGG + chr1_4:59354575-59354594 Msa0173890:intron 45.0%
GAAGAAAGTTCCTGGTAGGA+TGG + chr1_4:59354712-59354731 Msa0173890:CDS 45.0%
AGAAAGTTCCTGGTAGGATG+GGG + chr1_4:59354714-59354733 Msa0173890:CDS 45.0%
TAATTGATCCCCATCCTACC+AGG - chr1_4:59354725-59354744 None:intergenic 45.0%
! CAAAGGAGCATGTTGGATGG+AGG - chr1_4:59350668-59350687 None:intergenic 50.0%
! AGGCAAAGGAGCATGTTGGA+TGG - chr1_4:59350671-59350690 None:intergenic 50.0%
CAGACCAATGTCTCAGCTGT+AGG + chr1_4:59350790-59350809 Msa0173890:CDS 50.0%
GTCTCCTACAGCTGAGACAT+TGG - chr1_4:59350797-59350816 None:intergenic 50.0%
GACCCAGGAATGCAAAGAGA+TGG + chr1_4:59350814-59350833 Msa0173890:CDS 50.0%
TGGTCAAGAAGCTCCTCACA+TGG + chr1_4:59350879-59350898 Msa0173890:CDS 50.0%
GGTCAAGAAGCTCCTCACAT+GGG + chr1_4:59350880-59350899 Msa0173890:CDS 50.0%
GCCAGGTTCTCTGATTCACA+AGG + chr1_4:59351142-59351161 Msa0173890:intron 50.0%
GGTGTAGGAGAGTCATTACC+TGG + chr1_4:59351188-59351207 Msa0173890:CDS 50.0%
ATGTCTTCTGGTCTCAGACC+AGG - chr1_4:59351209-59351228 None:intergenic 50.0%
! CACCAAGGCCATGGCAATTT+TGG + chr1_4:59351297-59351316 Msa0173890:CDS 50.0%
CTACACCAAGCTGGAGTTTC+TGG - chr1_4:59352411-59352430 None:intergenic 50.0%
TGGTGTAGCCCTACAGGTTT+AGG + chr1_4:59352423-59352442 Msa0173890:CDS 50.0%
!! ATGGTTGGGTTGGTGATGCA+AGG + chr1_4:59352676-59352695 Msa0173890:CDS 50.0%
!! GGTTGGTGATGCAAGGACTT+GGG + chr1_4:59352683-59352702 Msa0173890:CDS 50.0%
GGCGAAATTTAGGTGACACG+GGG + chr1_4:59352912-59352931 Msa0173890:intron 50.0%
! CTTTTCGCAGGAGAAGTTCC+CGG - chr1_4:59353026-59353045 None:intergenic 50.0%
ACAAAGATGAGGTGGCAGAG+TGG + chr1_4:59353090-59353109 Msa0173890:CDS 50.0%
AAGCTTGGCCTATCCCTTTG+TGG + chr1_4:59353636-59353655 Msa0173890:intron 50.0%
GGTGCTAGACACATGTGACA+TGG - chr1_4:59353780-59353799 None:intergenic 50.0%
CTTAACGGGAGGGACGAAAA+CGG - chr1_4:59354230-59354249 None:intergenic 50.0%
TGTATCGTCGGATCGAAGGT+TGG + chr1_4:59354587-59354606 Msa0173890:intron 50.0%
ATCGGAACTGTAGAACGTGG+TGG + chr1_4:59354663-59354682 Msa0173890:intron 50.0%
!! GGGTTGGTGATGCAAGGACT+TGG + chr1_4:59352682-59352701 Msa0173890:CDS 55.0%
! ATCCAGGTGTCACAGCCAAG+TGG - chr1_4:59354279-59354298 None:intergenic 55.0%
CACGTGTATCGTCGGATCGA+AGG + chr1_4:59354583-59354602 Msa0173890:intron 55.0%
AACGTGGTGGTCCTGTTTGC+AGG + chr1_4:59354676-59354695 Msa0173890:intron 55.0%
ACGTGGTGGTCCTGTTTGCA+GGG + chr1_4:59354677-59354696 Msa0173890:intron 55.0%
GTCTCAGCTGTAGGAGACCC+AGG + chr1_4:59350799-59350818 Msa0173890:CDS 60.0%
GCTCTTGGGCTACCCATGTG+AGG - chr1_4:59350895-59350914 None:intergenic 60.0%
CCTGTAGGGCTACACCAAGC+TGG - chr1_4:59352420-59352439 None:intergenic 60.0%
!! CCAGCTTGGTGTAGCCCTAC+AGG + chr1_4:59352417-59352436 Msa0173890:CDS 60.0%
! TGCCACTTGGCTGTGACACC+TGG + chr1_4:59354274-59354293 Msa0173890:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59350468 59354791 59350468 ID=Msa0173890;Name=Msa0173890
chr1_4 mRNA 59350468 59354791 59350468 ID=Msa0173890-mRNA-1;Parent=Msa0173890;Name=Msa0173890-mRNA-1;_AED=0.14;_eAED=0.14;_QI=241|0.75|0.8|1|1|1|5|46|497
chr1_4 exon 59350468 59350940 59350468 ID=Msa0173890-mRNA-1:exon:18582;Parent=Msa0173890-mRNA-1
chr1_4 exon 59351147 59351733 59351147 ID=Msa0173890-mRNA-1:exon:18583;Parent=Msa0173890-mRNA-1
chr1_4 exon 59352234 59352749 59352234 ID=Msa0173890-mRNA-1:exon:18584;Parent=Msa0173890-mRNA-1
chr1_4 exon 59353020 59353130 59353020 ID=Msa0173890-mRNA-1:exon:18585;Parent=Msa0173890-mRNA-1
chr1_4 exon 59354698 59354791 59354698 ID=Msa0173890-mRNA-1:exon:18586;Parent=Msa0173890-mRNA-1
chr1_4 five_prime_UTR 59350468 59350708 59350468 ID=Msa0173890-mRNA-1:five_prime_utr;Parent=Msa0173890-mRNA-1
chr1_4 CDS 59350709 59350940 59350709 ID=Msa0173890-mRNA-1:cds;Parent=Msa0173890-mRNA-1
chr1_4 CDS 59351147 59351733 59351147 ID=Msa0173890-mRNA-1:cds;Parent=Msa0173890-mRNA-1
chr1_4 CDS 59352234 59352749 59352234 ID=Msa0173890-mRNA-1:cds;Parent=Msa0173890-mRNA-1
chr1_4 CDS 59353020 59353130 59353020 ID=Msa0173890-mRNA-1:cds;Parent=Msa0173890-mRNA-1
chr1_4 CDS 59354698 59354745 59354698 ID=Msa0173890-mRNA-1:cds;Parent=Msa0173890-mRNA-1
chr1_4 three_prime_UTR 59354746 59354791 59354746 ID=Msa0173890-mRNA-1:three_prime_utr;Parent=Msa0173890-mRNA-1
Gene Sequence

>Msa0173890

ATGGAGAAACAGTTGAAGAAGTTGTTTGTGTTAACAAATGTACTTCTTTTATGTGCCTCTCTTGTGTCCACAACTCATTCTCAGACCAATGTCTCAGCTGTAGGAGACCCAGGAATGCAAAGAGATGGTCTAAGAGTAGCCTTCGAAGCTTGGAATTTTTGCAATGAAGTTGGTCAAGAAGCTCCTCACATGGGTAGCCCAAGAGCAGCTGAATGTTTTGATCTTTCACAAGGTTCTCTGATTCACAAGGTAACAGAAAAAGTTAACAAACTTGGTGTAGGAGAGTCATTACCTGGTCTGAGACCAGAAGACATAAACAATATAGATCTTTATGCTGTTCAAAAGGAACTGTATTTAGGTTCTTTATGTGAAGTTAAAGACACACCAAGGCCATGGCAATTTTGGATGATAATGCTAAAAAATGGAAATTATGACACTAGGTCTGGTTTATGTCCTCAAGATGGTAAAAGAGTACCTCCTTTTAAACCAGGAAGGTTTCCTTGTTTTGGAACAGGATGCATGAACCAACCCATCTTCTGTCATCAATGGACAAAGCTGGAAGGTGATGTAATGAGAGGAGGATTTAATGGTACTTATGATTTGGATTCTAGTTGTAGAGATAGTGGACTTGATGATAATAACAATCTTTCATTTTATGAGGTGGTTTGGGAGAAGAAAGTTAATGTTGGGAGTTGGTTGTTCAAGCATAAGTTAAAGACTTCAAAGAAATATCCTTGGTTGATGCTTTACTTGAGAGCTGATACAGTTAGTGGATTCTCTGGTGGTTACCATTATGACACAAGGGGAATGCTTAAAGCTCCTCTTGAGTCACCAAATTTTAAGGTGAGGTTAACCTTAGATGTCAAGAAAGGAGGAGGATCCAAGAGTCAATTCTACCTTCTAGACATGGGAAGTTGTTGGAAGAACAATGGTGCACCTTGTGATGGAGATGTACTAACTGATGTCACTAGATACAGTGAAATGATCATCAATCCAGAAACTCCAGCTTGGTGTAGCCCTACAGGTTTAGGCAATTGTCCACCATTTCATATCACACCAGATGACAAAAAGATATTCAGAAATGACACCGCCAATTTCCCTTATTCAGCTTATCACTATTACTGTGCTCCAGGCAATGCTCAACATTTAGAGCAACCTGTTAGTACTTGTGATCCTTATAGTAATCCTCAAGCACAAGAGATAGTTCAGTTATTGCCTCATCCTATTTGGAGTGAGTATGGTTATCCCATTAAAAAAGGTGATGGTTGGGTTGGTGATGCAAGGACTTGGGAACTTGATGTTGGTGGCCTAGCAAGTAGACTTTACTTCTATCAGGATCCGGGAACTTCTCCTGCGAAAAGAATATGGACATCTATTGATACTGGCACAGAGATATTTGTTAGCGACAAAGATGAGGTGGCAGAGTGGACTATAAGTGACTTTGATGGAAAAGTTTTGAAGAAGAAAGTTCCTGGTAGGATGGGGATCAATTAA

Protein sequence

>Msa0173890

MEKQLKKLFVLTNVLLLCASLVSTTHSQTNVSAVGDPGMQRDGLRVAFEAWNFCNEVGQEAPHMGSPRAAECFDLSQGSLIHKVTEKVNKLGVGESLPGLRPEDINNIDLYAVQKELYLGSLCEVKDTPRPWQFWMIMLKNGNYDTRSGLCPQDGKRVPPFKPGRFPCFGTGCMNQPIFCHQWTKLEGDVMRGGFNGTYDLDSSCRDSGLDDNNNLSFYEVVWEKKVNVGSWLFKHKLKTSKKYPWLMLYLRADTVSGFSGGYHYDTRGMLKAPLESPNFKVRLTLDVKKGGGSKSQFYLLDMGSCWKNNGAPCDGDVLTDVTRYSEMIINPETPAWCSPTGLGNCPPFHITPDDKKIFRNDTANFPYSAYHYYCAPGNAQHLEQPVSTCDPYSNPQAQEIVQLLPHPIWSEYGYPIKKGDGWVGDARTWELDVGGLASRLYFYQDPGTSPAKRIWTSIDTGTEIFVSDKDEVAEWTISDFDGKVLKKKVPGRMGIN*