AlfalfaGEDB | Msa1356830

M. sativa cultivar zhongmu-4 / Msa1356830

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1356830	XP_003591315.1	91.910	445	12	2	1	421	1	445	0.0	850

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1356830	G7IBR5	91.910	445	12	2	1	421	1	445	0.0	850

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa1356830	0.808186	3.504530e-50	-8.615850e-47
Msa0002680	Msa1356830	0.815087	1.106277e-51	-8.615850e-47
Msa0002710	Msa1356830	0.813854	2.072990e-51	-8.615850e-47
Msa0003700	Msa1356830	0.827929	1.192532e-54	-8.615850e-47
Msa0003720	Msa1356830	0.811117	8.218987e-51	-8.615850e-47
Msa0005890	Msa1356830	0.834195	3.449565e-56	-8.615850e-47
Msa0007970	Msa1356830	0.813822	2.107162e-51	-8.615850e-47
Msa0009760	Msa1356830	0.805744	1.151241e-49	-8.615850e-47
Msa0011500	Msa1356830	0.803879	2.823775e-49	-8.615850e-47
Msa0012940	Msa1356830	0.823485	1.350146e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1356830	MtrunA17_Chr1g0194051	91.910	445	12	2	1	421	1	445	0.0	850
Msa1356830	MtrunA17_Chr2g0314331	60.542	332	120	3	91	412	29	359	2.37e-147	425
Msa1356830	MtrunA17_Chr2g0314351	58.462	65	27	0	15	79	19	83	7.80e-22	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1356830	AT2G47010.3	62.796	465	116	9	3	422	2	454	0.0	585
Msa1356830	AT2G47010.1	62.260	469	120	9	3	426	2	458	0.0	584
Msa1356830	AT2G47010.2	62.260	469	120	9	3	426	2	458	0.0	584
Msa1356830	AT1G17030.1	54.409	465	161	9	1	421	1	458	2.49e-173	495

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Find 113 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAAATTATGACACT+AGG	0.613148	tig0015874:+38805	Msa1356830:CDS
AAAGGAGCATGTTGGATGGA+GGG	0.587360	tig0015874:-38136	Msa1356830:intergenic
AACAACTTCCCATGTCTAGA+AGG	0.439967	tig0015874:-39785	Msa1356830:intergenic
AACAATGGTGCACCTTGTGA+TGG	0.559983	tig0015874:+39813	Msa1356830:CDS
AACATGCTCCTTTGCCTTTG+AGG	0.283272	tig0015874:+38146	Msa1356830:five_prime_UTR
AACCCATCTTCTGTCATCAA+TGG	0.504979	tig0015874:+38913	Msa1356830:CDS
AACCTTCCTGGTTTAAAAGG+AGG	0.568580	tig0015874:-38861	Msa1356830:intergenic
AAGATAAATCATAGAACCTA+AGG	0.488732	tig0015874:-37977	Msa1356830:intergenic
AAGGATAGATCACTATCTAA+AGG	0.531554	tig0015874:-37958	Msa1356830:intergenic
AAGTAGACTTTACTTCTATC+AGG	0.372180	tig0015874:+40202	Msa1356830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGATAGATCACTATCTAA+AGG	-	tig0015874:37961-37980	Msa1240310:intergenic	30.0%
TTAGATAGTGATCTATCCTT+AGG	+	tig0015874:37961-37980	Msa1356830:five_prime_UTR	30.0%
AGATCTTTATGCTGTTCAAA+AGG	+	tig0015874:38710-38729	Msa1356830:CDS	30.0%
GTTCAAAAGGAACTGTATTT+AGG	+	tig0015874:38723-38742	Msa1356830:CDS	30.0%
ATTATCATCCAAAATTGCCA+TGG	-	tig0015874:38780-38799	Msa1356830:intergenic	30.0%
AGACTTCAAAGAAATATCCT+TGG	+	tig0015874:39102-39121	Msa1356830:CDS	30.0%
AAAATTGAACAGAACAAGGA+GGG	-	tig0015874:39328-39347	Msa1356830:intergenic	30.0%
TAAAATTGAACAGAACAAGG+AGG	-	tig0015874:39329-39348	Msa1356830:intergenic	30.0%
GATACATTCAGAAACTAAAG+TGG	-	tig0015874:39418-39437	Msa1356830:intergenic	30.0%
GTTAACCTCACCTTAAAATT+TGG	-	tig0015874:39723-39742	Msa1356830:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0015874	gene	37940	40286	37940	ID=Msa1356830;Name=Msa1356830
tig0015874	mRNA	37940	40286	37940	ID=Msa1356830-mRNA-1;Parent=Msa1356830;Name=Msa1356830-mRNA-1;_AED=0.18;_eAED=0.18;_QI=241\|0\|0.33\|1\|1\|1\|3\|0\|441
tig0015874	exon	37940	38412	37940	ID=Msa1356830-mRNA-1:exon:10144;Parent=Msa1356830-mRNA-1
tig0015874	exon	38667	39205	38667	ID=Msa1356830-mRNA-1:exon:10145;Parent=Msa1356830-mRNA-1
tig0015874	exon	39732	40286	39732	ID=Msa1356830-mRNA-1:exon:10146;Parent=Msa1356830-mRNA-1
tig0015874	five_prime_UTR	37940	38180	37940	ID=Msa1356830-mRNA-1:five_prime_utr;Parent=Msa1356830-mRNA-1
tig0015874	CDS	38181	38412	38181	ID=Msa1356830-mRNA-1:cds;Parent=Msa1356830-mRNA-1
tig0015874	CDS	38667	39205	38667	ID=Msa1356830-mRNA-1:cds;Parent=Msa1356830-mRNA-1
tig0015874	CDS	39732	40286	39732	ID=Msa1356830-mRNA-1:cds;Parent=Msa1356830-mRNA-1

Gene Sequence

>Msa1356830

ATGGAGAAACAGTTGAAGAAGTTGTTTGTGTTAACAAATGTACTTCTTTTATGTGCCTCTCTTGTGTCCACAACTCATTCTCAGACCAATGTCTCAGCTGTAGGAGACCCAGGAATGCAAAGAGATGGTCTAAGAGTAGCCTTCGAAGCTTGGAATTTTTGCAATGAAGTTGGTCAAGAAGCTCCTCACATGGGTAGCCCAAGAGCAGCTGAATGTTTTGATCTTTCACAAGGAGAGTCATTACCTGGTCTGAGACCAGAAGACATAAACAATATAGATCTTTATGCTGTTCAAAAGGAACTGTATTTAGGTTCTTTATGTGAAGTTAAAGACACACCAAGGCCATGGCAATTTTGGATGATAATGCTAAAAAATGGAAATTATGACACTAGGTCTGGTTTATGTCCTCAAGATGGTAAAAGGGTACCTCCTTTTAAACCAGGAAGGTTTCCTTGTTTTGGAACAGGATGCATGAACCAACCCATCTTCTGTCATCAATGGACAAAGCTGGAAGGTGATGTAATGAGAGGAGGATTTAATGGTACTTATGATTTGGATTCTAGTTGTAGAGATAGTGGACTTGATGATAATAACAATCTTTCATTTTATGAGGTGGTTTGGGAGAAGAAAGTTAATGTTGGGAGTTGGTTGTTCAAGCATAAGTTAAAGACTTCAAAGAAATATCCTTGGTTGATGCTTTACTTGAGAGCTGATACAGTTAGTGGATTCTCTGGTGGTTACCATTATGACACAAGGGGAATGCTTAAAGCTGTGAGGTTAACCTTAGATGTCAAGAAAGGAGGAGGATCCAAGAGTCAATTCTACCTTCTAGACATGGGAAGTTGTTGGAAGAACAATGGTGCACCTTGTGATGGAGATGTACTAACTGATGTCACTAGATACAGTGAAATGATCATCAATCCAGAAACTCCAGCTTGGTGTAGCCCTACAGGTTTAGGCAATTGTCCACCATTTCATATCACACCAGATGACAAAAAGATATTCAGAAATGACACCGCCAATTTCCCTTATTCAGCTTATCACTATTACTGTGCTCCAGGCAATGCTCAACATTTAGAGCAACCTGTTAGTACTTGTGATCCTTATAGTAATCCTCAAGCACAAGAGATAGTTCAGTTATTGCCTCATCCTATTTGGAGTGAGTATGGTTATCCCATTAAAAAAGGTGATGGTTGGGTTGGTGATGCAAGGACTTGGGAACTTGATGTTGGTGGCCTAGCAAGTAGACTTTACTTCTATCAGGTCAATAATTCAATTACCACTCTACTTTTGGAAACTTATGAGTCATTACATTACATCACATGA

Protein sequence

>Msa1356830

MEKQLKKLFVLTNVLLLCASLVSTTHSQTNVSAVGDPGMQRDGLRVAFEAWNFCNEVGQEAPHMGSPRAAECFDLSQGESLPGLRPEDINNIDLYAVQKELYLGSLCEVKDTPRPWQFWMIMLKNGNYDTRSGLCPQDGKRVPPFKPGRFPCFGTGCMNQPIFCHQWTKLEGDVMRGGFNGTYDLDSSCRDSGLDDNNNLSFYEVVWEKKVNVGSWLFKHKLKTSKKYPWLMLYLRADTVSGFSGGYHYDTRGMLKAVRLTLDVKKGGGSKSQFYLLDMGSCWKNNGAPCDGDVLTDVTRYSEMIINPETPAWCSPTGLGNCPPFHITPDDKKIFRNDTANFPYSAYHYYCAPGNAQHLEQPVSTCDPYSNPQAQEIVQLLPHPIWSEYGYPIKKGDGWVGDARTWELDVGGLASRLYFYQVNNSITTLLLETYESLHYIT*