AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356830 MtrunA17_Chr1g0194051 91.910 445 12 2 1 421 1 445 0.0 850
Msa1356830 MtrunA17_Chr2g0314331 60.542 332 120 3 91 412 29 359 2.37e-147 425
Msa1356830 MtrunA17_Chr2g0314351 58.462 65 27 0 15 79 19 83 7.80e-22 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356830 AT2G47010.3 62.796 465 116 9 3 422 2 454 0.0 585
Msa1356830 AT2G47010.1 62.260 469 120 9 3 426 2 458 0.0 584
Msa1356830 AT2G47010.2 62.260 469 120 9 3 426 2 458 0.0 584
Msa1356830 AT1G17030.1 54.409 465 161 9 1 421 1 458 2.49e-173 495

Find 113 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAAGGCCATGGCAATTT+TGG 0.120315 tig0015874:+38769 Msa1356830:CDS
CTACACCAAGCTGGAGTTTC+TGG 0.122724 tig0015874:-39882 Msa1356830:intergenic
TCAATAAATTACAATAAATT+TGG 0.173167 tig0015874:+38080 Msa1356830:five_prime_UTR
TTCAATTACCACTCTACTTT+TGG 0.176407 tig0015874:+40232 Msa1356830:CDS
GTTCAAAAGGAACTGTATTT+AGG 0.209727 tig0015874:+38723 Msa1356830:CDS
CCAGGAAGGTTTCCTTGTTT+TGG 0.219496 tig0015874:+38873 Msa1356830:CDS
AGACCATCTCTTTGCATTCC+TGG 0.226808 tig0015874:-38289 Msa1356830:intergenic
TCTATATTGTTTATGTCTTC+TGG 0.232699 tig0015874:-38690 Msa1356830:intergenic
GGAAACCTTCCTGGTTTAAA+AGG 0.250546 tig0015874:-38864 Msa1356830:intergenic
TCCTCCTTTCTTGACATCTA+AGG 0.253365 tig0015874:-39742 Msa1356830:intergenic
TAATAGTGATAAGCTGAATA+AGG 0.272753 tig0015874:-39987 Msa1356830:intergenic
AACATGCTCCTTTGCCTTTG+AGG 0.283272 tig0015874:+38146 Msa1356830:five_prime_UTR
AGTTATTGCCTCATCCTATT+TGG 0.288586 tig0015874:+40096 Msa1356830:CDS
ATTTAATGGTACTTATGATT+TGG 0.292790 tig0015874:+38968 Msa1356830:CDS
TATGTCCTCAAGATGGTAAA+AGG 0.317835 tig0015874:+38835 Msa1356830:CDS
CCAAAACAAGGAAACCTTCC+TGG 0.324704 tig0015874:-38873 Msa1356830:intergenic
CATCCTATTTGGAGTGAGTA+TGG 0.325483 tig0015874:+40107 Msa1356830:CDS
TGGTGTAGCCCTACAGGTTT+AGG 0.336158 tig0015874:+39897 Msa1356830:CDS
TGTGCTTGAGGATTACTATA+AGG 0.345328 tig0015874:-40062 Msa1356830:intergenic
GTAATGAGAGGAGGATTTAA+TGG 0.352289 tig0015874:+38954 Msa1356830:CDS
GACCATCTCTTTGCATTCCT+GGG 0.357904 tig0015874:-38288 Msa1356830:intergenic
TGGATGGAGGGTCTAATATT+AGG 0.362383 tig0015874:-38124 Msa1356830:intergenic
GCATTCCCCTTGTGTCATAA+TGG 0.362536 tig0015874:-39175 Msa1356830:intergenic
ATAAGCTGAATAAGGGAAAT+TGG 0.363013 tig0015874:-39979 Msa1356830:intergenic
TTGAGAGCTGATACAGTTAG+TGG 0.369320 tig0015874:+39137 Msa1356830:CDS
AAGTAGACTTTACTTCTATC+AGG 0.372180 tig0015874:+40202 Msa1356830:CDS
TAACCATACTCACTCCAAAT+AGG 0.374128 tig0015874:-40110 Msa1356830:intergenic
TTAGATAGTGATCTATCCTT+AGG 0.389574 tig0015874:+37961 Msa1356830:five_prime_UTR
TCAAAACATTCAGCTGCTCT+TGG 0.404310 tig0015874:-38379 Msa1356830:intergenic
GGGTTGGTGATGCAAGGACT+TGG 0.408731 tig0015874:+40156 Msa1356830:CDS
GATTCTAGTTGTAGAGATAG+TGG 0.419018 tig0015874:+38990 Msa1356830:CDS
CCAGCTTGGTGTAGCCCTAC+AGG 0.419351 tig0015874:+39891 Msa1356830:CDS
ATCCAAAATTGCCATGGCCT+TGG 0.420714 tig0015874:-38771 Msa1356830:intergenic
TAAGAGTAGCCTTCGAAGCT+TGG 0.430314 tig0015874:+38311 Msa1356830:CDS
GGGAGAAGAAAGTTAATGTT+GGG 0.436644 tig0015874:+39054 Msa1356830:CDS
TAAGGATCACAAGTACTAAC+AGG 0.438806 tig0015874:-40044 Msa1356830:intergenic
AACAACTTCCCATGTCTAGA+AGG 0.439967 tig0015874:-39785 Msa1356830:intergenic
GGAAATTATGACACTAGGTC+TGG 0.453514 tig0015874:+38810 Msa1356830:CDS
TTCTAGACATGGGAAGTTGT+TGG 0.455499 tig0015874:+39787 Msa1356830:CDS
TGTCCATTGATGACAGAAGA+TGG 0.460144 tig0015874:-38916 Msa1356830:intergenic
AATAGTGATAAGCTGAATAA+GGG 0.461907 tig0015874:-39986 Msa1356830:intergenic
TGGGAGAAGAAAGTTAATGT+TGG 0.466322 tig0015874:+39053 Msa1356830:CDS
GTCTCCTACAGCTGAGACAT+TGG 0.469452 tig0015874:-38266 Msa1356830:intergenic
AGACTTCAAAGAAATATCCT+TGG 0.482604 tig0015874:+39102 Msa1356830:CDS
GATACAGTTAGTGGATTCTC+TGG 0.484218 tig0015874:+39146 Msa1356830:CDS
AGATCTTTATGCTGTTCAAA+AGG 0.484340 tig0015874:+38710 Msa1356830:CDS
AAGATAAATCATAGAACCTA+AGG 0.488732 tig0015874:-37977 Msa1356830:intergenic
AGAAAGTTAATGTTGGGAGT+TGG 0.491514 tig0015874:+39060 Msa1356830:CDS
TAGAAGGTAGAATTGACTCT+TGG 0.493404 tig0015874:-39769 Msa1356830:intergenic
CAAAACATTCAGCTGCTCTT+GGG 0.494665 tig0015874:-38378 Msa1356830:intergenic
TGAACTATCTCTTGTGCTTG+AGG 0.503738 tig0015874:-40074 Msa1356830:intergenic
AACCCATCTTCTGTCATCAA+TGG 0.504979 tig0015874:+38913 Msa1356830:CDS
ATGGTTGGGTTGGTGATGCA+AGG 0.505505 tig0015874:+40150 Msa1356830:CDS
ATGTCTTCTGGTCTCAGACC+AGG 0.512031 tig0015874:-38678 Msa1356830:intergenic
AATTACAATAAATTTGGCTA+AGG 0.516229 tig0015874:+38086 Msa1356830:five_prime_UTR
TATCACTATTACTGTGCTCC+AGG 0.516398 tig0015874:+39999 Msa1356830:CDS
ATAAATTTGGCTAAGGCTAG+TGG 0.517450 tig0015874:+38093 Msa1356830:five_prime_UTR
TCATCTGGTGTGATATGAAA+TGG 0.531286 tig0015874:-39930 Msa1356830:intergenic
AAGGATAGATCACTATCTAA+AGG 0.531554 tig0015874:-37958 Msa1356830:intergenic
CTGTCATCAATGGACAAAGC+TGG 0.533115 tig0015874:+38923 Msa1356830:CDS
ATGTCCTCAAGATGGTAAAA+GGG 0.535714 tig0015874:+38836 Msa1356830:CDS
CCTGTAGGGCTACACCAAGC+TGG 0.537936 tig0015874:-39891 Msa1356830:intergenic
CAGACCAATGTCTCAGCTGT+AGG 0.540258 tig0015874:+38262 Msa1356830:CDS
ACTTGGGAACTTGATGTTGG+TGG 0.540896 tig0015874:+40173 Msa1356830:CDS
TCTAAATGTTGAGCATTGCC+TGG 0.545866 tig0015874:-40017 Msa1356830:intergenic
GGTTGGTGATGCAAGGACTT+GGG 0.546921 tig0015874:+40157 Msa1356830:CDS
AACAATGGTGCACCTTGTGA+TGG 0.559983 tig0015874:+39813 Msa1356830:CDS
AGAAGTAAAGTCTACTTGCT+AGG 0.561259 tig0015874:-40196 Msa1356830:intergenic
GGACAATTGCCTAAACCTGT+AGG 0.561583 tig0015874:-39906 Msa1356830:intergenic
GTCTCAGCTGTAGGAGACCC+AGG 0.562074 tig0015874:+38271 Msa1356830:CDS
AACCTTCCTGGTTTAAAAGG+AGG 0.568580 tig0015874:-38861 Msa1356830:intergenic
GACAATTGCCTAAACCTGTA+GGG 0.570433 tig0015874:-39905 Msa1356830:intergenic
CAAAGGAGCATGTTGGATGG+AGG 0.572196 tig0015874:-38137 Msa1356830:intergenic
GTCCATTGATGACAGAAGAT+GGG 0.572666 tig0015874:-38915 Msa1356830:intergenic
TTAACCTTAGATGTCAAGAA+AGG 0.573621 tig0015874:+39738 Msa1356830:CDS
TGGTCAAGAAGCTCCTCACA+TGG 0.581869 tig0015874:+38351 Msa1356830:CDS
AGGCAAAGGAGCATGTTGGA+TGG 0.582816 tig0015874:-38140 Msa1356830:intergenic
TTAGATGTCAAGAAAGGAGG+AGG 0.583402 tig0015874:+39744 Msa1356830:CDS
ATTGATGACAGAAGATGGGT+TGG 0.585027 tig0015874:-38911 Msa1356830:intergenic
AAAGGAGCATGTTGGATGGA+GGG 0.587360 tig0015874:-38136 Msa1356830:intergenic
TCAATTCTACCTTCTAGACA+TGG 0.588399 tig0015874:+39776 Msa1356830:CDS
GCTCTTGGGCTACCCATGTG+AGG 0.591146 tig0015874:-38364 Msa1356830:intergenic
AGGACTTGGGAACTTGATGT+TGG 0.596427 tig0015874:+40170 Msa1356830:CDS
GACCCAGGAATGCAAAGAGA+TGG 0.596905 tig0015874:+38286 Msa1356830:CDS
TTAAAGACACACCAAGGCCA+TGG 0.597630 tig0015874:+38760 Msa1356830:CDS
CTGGAAGGTGATGTAATGAG+AGG 0.599493 tig0015874:+38942 Msa1356830:CDS
ATGCATCCTGTTCCAAAACA+AGG 0.602446 tig0015874:-38885 Msa1356830:intergenic
TCAAAGGCAAAGGAGCATGT+TGG 0.605448 tig0015874:-38144 Msa1356830:intergenic
TACTCACTCCAAATAGGATG+AGG 0.606279 tig0015874:-40104 Msa1356830:intergenic
AAAATGGAAATTATGACACT+AGG 0.613148 tig0015874:+38805 Msa1356830:CDS
TCAATCCAGAAACTCCAGCT+TGG 0.614056 tig0015874:+39877 Msa1356830:CDS
GGTGTAGGAGAGTCATTACC+TGG 0.615130 tig0015874:+38660 Msa1356830:intron
TCTGGTTTATGTCCTCAAGA+TGG 0.622613 tig0015874:+38828 Msa1356830:CDS
CATCAATGGACAAAGCTGGA+AGG 0.623235 tig0015874:+38927 Msa1356830:CDS
ACAGTTAGTGGATTCTCTGG+TGG 0.623686 tig0015874:+39149 Msa1356830:CDS
ATTATCATCCAAAATTGCCA+TGG 0.624144 tig0015874:-38777 Msa1356830:intergenic
ACCTTAGATGTCAAGAAAGG+AGG 0.624457 tig0015874:+39741 Msa1356830:CDS
GAAGGTGATGTAATGAGAGG+AGG 0.628897 tig0015874:+38945 Msa1356830:CDS
ATGAGTTGTGGACACAAGAG+AGG 0.634235 tig0015874:-38236 Msa1356830:intergenic
ATAAGTTTCCAAAAGTAGAG+TGG 0.637753 tig0015874:-40240 Msa1356830:intergenic
GTGGTTACCATTATGACACA+AGG 0.639125 tig0015874:+39168 Msa1356830:CDS
AGCTGAATAAGGGAAATTGG+CGG 0.640495 tig0015874:-39976 Msa1356830:intergenic
CAATTCTACCTTCTAGACAT+GGG 0.645465 tig0015874:+39777 Msa1356830:CDS
CTCAAGTAAAGCATCAACCA+AGG 0.657316 tig0015874:-39119 Msa1356830:intergenic
ATTTGGCTAAGGCTAGTGGA+AGG 0.676268 tig0015874:+38097 Msa1356830:five_prime_UTR
TCTGGTGTGATATGAAATGG+TGG 0.678495 tig0015874:-39927 Msa1356830:intergenic
GGTTACCATTATGACACAAG+GGG 0.678691 tig0015874:+39170 Msa1356830:CDS
GGTCAAGAAGCTCCTCACAT+GGG 0.681692 tig0015874:+38352 Msa1356830:CDS
GTTAGTACATCTCCATCACA+AGG 0.685016 tig0015874:-39825 Msa1356830:intergenic
TGGTTACCATTATGACACAA+GGG 0.690726 tig0015874:+39169 Msa1356830:CDS
ATTGGTCTGAGAATGAGTTG+TGG 0.699603 tig0015874:-38248 Msa1356830:intergenic
GGAAGTTGTTGGAAGAACAA+TGG 0.714098 tig0015874:+39798 Msa1356830:CDS
GTGAAGTTAAAGACACACCA+AGG 0.745244 tig0015874:+38754 Msa1356830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATAAATTACAATAAATT+TGG + tig0015874:38080-38099 Msa1356830:five_prime_UTR 10.0%
!! TCAATAAATTACAATAAATT+TGG + tig0015874:38080-38099 Msa1356830:five_prime_UTR 10.0%
!!! TAAAAATAGAAGAAATTTTG+AGG - tig0015874:38460-38479 Msa1356830:intergenic 15.0%
!! CTCAACTTTAAATAAAATTT+AGG + tig0015874:38506-38525 Msa1356830:intron 15.0%
!! AAAATGACTGATTATTAATT+TGG + tig0015874:39645-39664 Msa1356830:intron 15.0%
!!! TAAAAATAGAAGAAATTTTG+AGG - tig0015874:38460-38479 Msa1356830:intergenic 15.0%
!! CTCAACTTTAAATAAAATTT+AGG + tig0015874:38506-38525 Msa1356830:intron 15.0%
!! AAAATGACTGATTATTAATT+TGG + tig0015874:39645-39664 Msa1356830:intron 15.0%
!! AATTACAATAAATTTGGCTA+AGG + tig0015874:38086-38105 Msa1356830:five_prime_UTR 20.0%
!! AGGACTAAAATGAAATATTA+GGG - tig0015874:38440-38459 Msa1356830:intergenic 20.0%
!! ATTTAATGGTACTTATGATT+TGG + tig0015874:38968-38987 Msa1356830:CDS 20.0%
!!! TAACAATCTTTCATTTTATG+AGG + tig0015874:39025-39044 Msa1356830:CDS 20.0%
!!! GAATTGAAAATTTGAAACAT+AGG - tig0015874:39236-39255 Msa1356830:intergenic 20.0%
!! AATTAAAATTGAACAGAACA+AGG - tig0015874:39332-39351 Msa1356830:intergenic 20.0%
!!! TTCCATTAATGTATTTTGTT+TGG + tig0015874:39351-39370 Msa1356830:intron 20.0%
!!! TTTGGACTAAACAAAAATTT+TGG + tig0015874:39369-39388 Msa1356830:intron 20.0%
!!! ATATCTTTTGTTAGTTAGAT+TGG - tig0015874:39522-39541 Msa1356830:intergenic 20.0%
!! AATTACAATAAATTTGGCTA+AGG + tig0015874:38086-38105 Msa1356830:five_prime_UTR 20.0%
!! AGGACTAAAATGAAATATTA+GGG - tig0015874:38440-38459 Msa1356830:intergenic 20.0%
!! ATTTAATGGTACTTATGATT+TGG + tig0015874:38968-38987 Msa1356830:CDS 20.0%
!!! TAACAATCTTTCATTTTATG+AGG + tig0015874:39025-39044 Msa1356830:CDS 20.0%
!!! GAATTGAAAATTTGAAACAT+AGG - tig0015874:39236-39255 Msa1356830:intergenic 20.0%
!! AATTAAAATTGAACAGAACA+AGG - tig0015874:39332-39351 Msa1356830:intergenic 20.0%
!!! TTCCATTAATGTATTTTGTT+TGG + tig0015874:39351-39370 Msa1356830:intron 20.0%
!!! TTTGGACTAAACAAAAATTT+TGG + tig0015874:39369-39388 Msa1356830:intron 20.0%
!!! ATATCTTTTGTTAGTTAGAT+TGG - tig0015874:39522-39541 Msa1356830:intergenic 20.0%
! AAGATAAATCATAGAACCTA+AGG - tig0015874:37980-37999 Msa1356830:intergenic 25.0%
! GAGGACTAAAATGAAATATT+AGG - tig0015874:38441-38460 Msa1356830:intergenic 25.0%
!! TTTATTTAAAGTTGAGAACC+TGG - tig0015874:38502-38521 Msa1356830:intergenic 25.0%
! ACAGAAAAAGTTAACAAACT+TGG + tig0015874:38639-38658 Msa1356830:intron 25.0%
! TCTATATTGTTTATGTCTTC+TGG - tig0015874:38693-38712 Msa1356830:intergenic 25.0%
!! TGGATGATAATGCTAAAAAA+TGG + tig0015874:38789-38808 Msa1356830:CDS 25.0%
! AAAATGGAAATTATGACACT+AGG + tig0015874:38805-38824 Msa1356830:CDS 25.0%
! GTCCAAACAAAATACATTAA+TGG - tig0015874:39356-39375 Msa1356830:intergenic 25.0%
!!! TTTTAGTCTTTAAATGTGTG+AGG - tig0015874:39629-39648 Msa1356830:intergenic 25.0%
! GGCTGAAATTTAAACTAAAA+TGG - tig0015874:39690-39709 Msa1356830:intergenic 25.0%
! AATAGTGATAAGCTGAATAA+GGG - tig0015874:39989-40008 Msa1356830:intergenic 25.0%
! TAATAGTGATAAGCTGAATA+AGG - tig0015874:39990-40009 Msa1356830:intergenic 25.0%
! TATGGTTATCCCATTAAAAA+AGG + tig0015874:40125-40144 Msa1356830:CDS 25.0%
! AAGATAAATCATAGAACCTA+AGG - tig0015874:37980-37999 Msa1356830:intergenic 25.0%
! GAGGACTAAAATGAAATATT+AGG - tig0015874:38441-38460 Msa1356830:intergenic 25.0%
!! TTTATTTAAAGTTGAGAACC+TGG - tig0015874:38502-38521 Msa1356830:intergenic 25.0%
! ACAGAAAAAGTTAACAAACT+TGG + tig0015874:38639-38658 Msa1356830:intron 25.0%
! TCTATATTGTTTATGTCTTC+TGG - tig0015874:38693-38712 Msa1356830:intergenic 25.0%
!! TGGATGATAATGCTAAAAAA+TGG + tig0015874:38789-38808 Msa1356830:CDS 25.0%
! AAAATGGAAATTATGACACT+AGG + tig0015874:38805-38824 Msa1356830:CDS 25.0%
! GTCCAAACAAAATACATTAA+TGG - tig0015874:39356-39375 Msa1356830:intergenic 25.0%
!!! TTTTAGTCTTTAAATGTGTG+AGG - tig0015874:39629-39648 Msa1356830:intergenic 25.0%
! GGCTGAAATTTAAACTAAAA+TGG - tig0015874:39690-39709 Msa1356830:intergenic 25.0%
! AATAGTGATAAGCTGAATAA+GGG - tig0015874:39989-40008 Msa1356830:intergenic 25.0%
! TAATAGTGATAAGCTGAATA+AGG - tig0015874:39990-40009 Msa1356830:intergenic 25.0%
! TATGGTTATCCCATTAAAAA+AGG + tig0015874:40125-40144 Msa1356830:CDS 25.0%
AAGGATAGATCACTATCTAA+AGG - tig0015874:37961-37980 Msa1240310:intergenic 30.0%
TTAGATAGTGATCTATCCTT+AGG + tig0015874:37961-37980 Msa1356830:five_prime_UTR 30.0%
! TGGAATTTTTGCAATGAAGT+TGG + tig0015874:38331-38350 Msa1356830:CDS 30.0%
!!! GAATGTTTTGATCTTTCACA+AGG + tig0015874:38391-38410 Msa1356830:CDS 30.0%
!!! TTTTTTGTTGTTGTATGACC+AGG + tig0015874:38481-38500 Msa1356830:intron 30.0%
!! AAAGTTAACAAACTTGGTGT+AGG + tig0015874:38645-38664 Msa1356830:intron 30.0%
AGATCTTTATGCTGTTCAAA+AGG + tig0015874:38710-38729 Msa1356830:CDS 30.0%
GTTCAAAAGGAACTGTATTT+AGG + tig0015874:38723-38742 Msa1356830:CDS 30.0%
ATTATCATCCAAAATTGCCA+TGG - tig0015874:38780-38799 Msa1356830:intergenic 30.0%
! CAATCTTTCATTTTATGAGG+TGG + tig0015874:39028-39047 Msa1356830:CDS 30.0%
! TTTCATTTTATGAGGTGGTT+TGG + tig0015874:39033-39052 Msa1356830:CDS 30.0%
! TTCATTTTATGAGGTGGTTT+GGG + tig0015874:39034-39053 Msa1356830:CDS 30.0%
AGACTTCAAAGAAATATCCT+TGG + tig0015874:39102-39121 Msa1356830:CDS 30.0%
! TTTGAAACATAGGATTCTGA+AGG - tig0015874:39226-39245 Msa1356830:intergenic 30.0%
AAAATTGAACAGAACAAGGA+GGG - tig0015874:39328-39347 Msa1356830:intergenic 30.0%
TAAAATTGAACAGAACAAGG+AGG - tig0015874:39329-39348 Msa1356830:intergenic 30.0%
GATACATTCAGAAACTAAAG+TGG - tig0015874:39418-39437 Msa1356830:intergenic 30.0%
! TTAAAATTTGGTGACTCAAG+AGG - tig0015874:39711-39730 Msa1356830:intergenic 30.0%
! TCTTGAGTCACCAAATTTTA+AGG + tig0015874:39710-39729 Msa1356830:intron 30.0%
GTTAACCTCACCTTAAAATT+TGG - tig0015874:39723-39742 Msa1356830:intergenic 30.0%
TTAACCTTAGATGTCAAGAA+AGG + tig0015874:39738-39757 Msa1356830:CDS 30.0%
! CTGAATATCTTTTTGTCATC+TGG - tig0015874:39948-39967 Msa1356830:intergenic 30.0%
ATAAGCTGAATAAGGGAAAT+TGG - tig0015874:39982-40001 Msa1356830:intergenic 30.0%
TATCCCATTAAAAAAGGTGA+TGG + tig0015874:40131-40150 Msa1356830:CDS 30.0%
!!! CAACCATCACCTTTTTTAAT+GGG - tig0015874:40137-40156 Msa1356830:intergenic 30.0%
! CATTAAAAAAGGTGATGGTT+GGG + tig0015874:40136-40155 Msa1356830:CDS 30.0%
AAGTAGACTTTACTTCTATC+AGG + tig0015874:40202-40221 Msa1356830:CDS 30.0%
! TTCAATTACCACTCTACTTT+TGG + tig0015874:40232-40251 Msa1356830:CDS 30.0%
ATAAGTTTCCAAAAGTAGAG+TGG - tig0015874:40243-40262 Msa1356830:intergenic 30.0%
TCATTACATTACATCACATG+AGG + tig0015874:40266-40285 Msa1356830:CDS 30.0%
AAGGATAGATCACTATCTAA+AGG - tig0015874:37961-37980 Msa1356830:intergenic 30.0%
TTAGATAGTGATCTATCCTT+AGG + tig0015874:37961-37980 Msa1356830:five_prime_UTR 30.0%
! TGGAATTTTTGCAATGAAGT+TGG + tig0015874:38331-38350 Msa1356830:CDS 30.0%
!!! GAATGTTTTGATCTTTCACA+AGG + tig0015874:38391-38410 Msa1356830:CDS 30.0%
!!! TTTTTTGTTGTTGTATGACC+AGG + tig0015874:38481-38500 Msa1356830:intron 30.0%
!! AAAGTTAACAAACTTGGTGT+AGG + tig0015874:38645-38664 Msa1356830:intron 30.0%
AGATCTTTATGCTGTTCAAA+AGG + tig0015874:38710-38729 Msa1356830:CDS 30.0%
GTTCAAAAGGAACTGTATTT+AGG + tig0015874:38723-38742 Msa1356830:CDS 30.0%
ATTATCATCCAAAATTGCCA+TGG - tig0015874:38780-38799 Msa1356830:intergenic 30.0%
! CAATCTTTCATTTTATGAGG+TGG + tig0015874:39028-39047 Msa1356830:CDS 30.0%
! TTTCATTTTATGAGGTGGTT+TGG + tig0015874:39033-39052 Msa1356830:CDS 30.0%
! TTCATTTTATGAGGTGGTTT+GGG + tig0015874:39034-39053 Msa1356830:CDS 30.0%
AGACTTCAAAGAAATATCCT+TGG + tig0015874:39102-39121 Msa1356830:CDS 30.0%
! TTTGAAACATAGGATTCTGA+AGG - tig0015874:39226-39245 Msa1356830:intergenic 30.0%
AAAATTGAACAGAACAAGGA+GGG - tig0015874:39328-39347 Msa1356830:intergenic 30.0%
TAAAATTGAACAGAACAAGG+AGG - tig0015874:39329-39348 Msa1356830:intergenic 30.0%
GATACATTCAGAAACTAAAG+TGG - tig0015874:39418-39437 Msa1356830:intergenic 30.0%
! TTAAAATTTGGTGACTCAAG+AGG - tig0015874:39711-39730 Msa1356830:intergenic 30.0%
! TCTTGAGTCACCAAATTTTA+AGG + tig0015874:39710-39729 Msa1356830:intron 30.0%
GTTAACCTCACCTTAAAATT+TGG - tig0015874:39723-39742 Msa1356830:intergenic 30.0%
TTAACCTTAGATGTCAAGAA+AGG + tig0015874:39738-39757 Msa1356830:CDS 30.0%
! CTGAATATCTTTTTGTCATC+TGG - tig0015874:39948-39967 Msa1356830:intergenic 30.0%
ATAAGCTGAATAAGGGAAAT+TGG - tig0015874:39982-40001 Msa1356830:intergenic 30.0%
TATCCCATTAAAAAAGGTGA+TGG + tig0015874:40131-40150 Msa1356830:CDS 30.0%
!!! CAACCATCACCTTTTTTAAT+GGG - tig0015874:40137-40156 Msa1356830:intergenic 30.0%
! CATTAAAAAAGGTGATGGTT+GGG + tig0015874:40136-40155 Msa1356830:CDS 30.0%
AAGTAGACTTTACTTCTATC+AGG + tig0015874:40202-40221 Msa1356830:CDS 30.0%
! TTCAATTACCACTCTACTTT+TGG + tig0015874:40232-40251 Msa1356830:CDS 30.0%
ATAAGTTTCCAAAAGTAGAG+TGG - tig0015874:40243-40262 Msa1356830:intergenic 30.0%
ATAAATTTGGCTAAGGCTAG+TGG + tig0015874:38093-38112 Msa1356830:five_prime_UTR 35.0%
!!! TCTTTTTTCCTCAAAGGCAA+AGG - tig0015874:38157-38176 Msa1356830:intergenic 35.0%
! TTTGCCTTTGAGGAAAAAAG+AGG + tig0015874:38156-38175 Msa1356830:five_prime_UTR 35.0%
!!! ATTGCCTCTTTTTTCCTCAA+AGG - tig0015874:38163-38182 Msa1356830:intergenic 35.0%
TTTGAGGAAAAAAGAGGCAA+TGG + tig0015874:38162-38181 Msa1356830:exon 35.0%
TATGTCCTCAAGATGGTAAA+AGG + tig0015874:38835-38854 Msa1356830:CDS 35.0%
ATGTCCTCAAGATGGTAAAA+GGG + tig0015874:38836-38855 Msa1356830:CDS 35.0%
GTAATGAGAGGAGGATTTAA+TGG + tig0015874:38954-38973 Msa1356830:CDS 35.0%
! GATTCTAGTTGTAGAGATAG+TGG + tig0015874:38990-39009 Msa1356830:CDS 35.0%
TGGGAGAAGAAAGTTAATGT+TGG + tig0015874:39053-39072 Msa1356830:CDS 35.0%
GGGAGAAGAAAGTTAATGTT+GGG + tig0015874:39054-39073 Msa1356830:CDS 35.0%
AGAAAGTTAATGTTGGGAGT+TGG + tig0015874:39060-39079 Msa1356830:CDS 35.0%
TGGTTACCATTATGACACAA+GGG + tig0015874:39169-39188 Msa1356830:CDS 35.0%
! ACATAGGATTCTGAAGGAAA+TGG - tig0015874:39220-39239 Msa1356830:intergenic 35.0%
!!! AGTCACCAAATTTTAAGGTG+AGG + tig0015874:39715-39734 Msa1356830:intron 35.0%
! TAGAAGGTAGAATTGACTCT+TGG - tig0015874:39772-39791 Msa1356830:intergenic 35.0%
TCAATTCTACCTTCTAGACA+TGG + tig0015874:39776-39795 Msa1356830:CDS 35.0%
CAATTCTACCTTCTAGACAT+GGG + tig0015874:39777-39796 Msa1356830:CDS 35.0%
TCATCTGGTGTGATATGAAA+TGG - tig0015874:39933-39952 Msa1356830:intergenic 35.0%
TAAGGATCACAAGTACTAAC+AGG - tig0015874:40047-40066 Msa1356830:intergenic 35.0%
TGTGCTTGAGGATTACTATA+AGG - tig0015874:40065-40084 Msa1356830:intergenic 35.0%
AGTTATTGCCTCATCCTATT+TGG + tig0015874:40096-40115 Msa1356830:CDS 35.0%
TAACCATACTCACTCCAAAT+AGG - tig0015874:40113-40132 Msa1356830:intergenic 35.0%
!!! CCAACCATCACCTTTTTTAA+TGG - tig0015874:40138-40157 Msa1356830:intergenic 35.0%
! CCATTAAAAAAGGTGATGGT+TGG + tig0015874:40135-40154 Msa1356830:CDS 35.0%
AGAAGTAAAGTCTACTTGCT+AGG - tig0015874:40199-40218 Msa1356830:intergenic 35.0%
ATAAATTTGGCTAAGGCTAG+TGG + tig0015874:38093-38112 Msa1356830:five_prime_UTR 35.0%
!!! TCTTTTTTCCTCAAAGGCAA+AGG - tig0015874:38157-38176 Msa1356830:intergenic 35.0%
! TTTGCCTTTGAGGAAAAAAG+AGG + tig0015874:38156-38175 Msa1356830:five_prime_UTR 35.0%
!!! ATTGCCTCTTTTTTCCTCAA+AGG - tig0015874:38163-38182 Msa1356830:intergenic 35.0%
TTTGAGGAAAAAAGAGGCAA+TGG + tig0015874:38162-38181 Msa1356830:exon 35.0%
TATGTCCTCAAGATGGTAAA+AGG + tig0015874:38835-38854 Msa1356830:CDS 35.0%
ATGTCCTCAAGATGGTAAAA+GGG + tig0015874:38836-38855 Msa1356830:CDS 35.0%
GTAATGAGAGGAGGATTTAA+TGG + tig0015874:38954-38973 Msa1356830:CDS 35.0%
! GATTCTAGTTGTAGAGATAG+TGG + tig0015874:38990-39009 Msa1356830:CDS 35.0%
TGGGAGAAGAAAGTTAATGT+TGG + tig0015874:39053-39072 Msa1356830:CDS 35.0%
GGGAGAAGAAAGTTAATGTT+GGG + tig0015874:39054-39073 Msa1356830:CDS 35.0%
AGAAAGTTAATGTTGGGAGT+TGG + tig0015874:39060-39079 Msa1356830:CDS 35.0%
TGGTTACCATTATGACACAA+GGG + tig0015874:39169-39188 Msa1356830:CDS 35.0%
! ACATAGGATTCTGAAGGAAA+TGG - tig0015874:39220-39239 Msa1356830:intergenic 35.0%
!!! AGTCACCAAATTTTAAGGTG+AGG + tig0015874:39715-39734 Msa1356830:intron 35.0%
! TAGAAGGTAGAATTGACTCT+TGG - tig0015874:39772-39791 Msa1356830:intergenic 35.0%
TCAATTCTACCTTCTAGACA+TGG + tig0015874:39776-39795 Msa1356830:CDS 35.0%
CAATTCTACCTTCTAGACAT+GGG + tig0015874:39777-39796 Msa1356830:CDS 35.0%
TCATCTGGTGTGATATGAAA+TGG - tig0015874:39933-39952 Msa1356830:intergenic 35.0%
TAAGGATCACAAGTACTAAC+AGG - tig0015874:40047-40066 Msa1356830:intergenic 35.0%
TGTGCTTGAGGATTACTATA+AGG - tig0015874:40065-40084 Msa1356830:intergenic 35.0%
AGTTATTGCCTCATCCTATT+TGG + tig0015874:40096-40115 Msa1356830:CDS 35.0%
TAACCATACTCACTCCAAAT+AGG - tig0015874:40113-40132 Msa1356830:intergenic 35.0%
!!! CCAACCATCACCTTTTTTAA+TGG - tig0015874:40138-40157 Msa1356830:intergenic 35.0%
! CCATTAAAAAAGGTGATGGT+TGG + tig0015874:40135-40154 Msa1356830:CDS 35.0%
AGAAGTAAAGTCTACTTGCT+AGG - tig0015874:40199-40218 Msa1356830:intergenic 35.0%
TGGATGGAGGGTCTAATATT+AGG - tig0015874:38127-38146 Msa1356830:intergenic 40.0%
! ATTGGTCTGAGAATGAGTTG+TGG - tig0015874:38251-38270 Msa1356830:intergenic 40.0%
GCAAAAATTCCAAGCTTCGA+AGG - tig0015874:38323-38342 Msa1356830:intergenic 40.0%
CAAAACATTCAGCTGCTCTT+GGG - tig0015874:38381-38400 Msa1356830:intergenic 40.0%
TCAAAACATTCAGCTGCTCT+TGG - tig0015874:38382-38401 Msa1356830:intergenic 40.0%
! TCATTTTACAACTGTCTCCG+AGG + tig0015874:38568-38587 Msa1356830:intron 40.0%
ACAACGGTTCAAAATCACCT+CGG - tig0015874:38588-38607 Msa1356830:intergenic 40.0%
AGAACCTGGCAATACAACAA+CGG - tig0015874:38604-38623 Msa1356830:intergenic 40.0%
GTGAAGTTAAAGACACACCA+AGG + tig0015874:38754-38773 Msa1356830:CDS 40.0%
GGAAATTATGACACTAGGTC+TGG + tig0015874:38810-38829 Msa1356830:CDS 40.0%
! TCTGGTTTATGTCCTCAAGA+TGG + tig0015874:38828-38847 Msa1356830:CDS 40.0%
! TACCTCCTTTTAAACCAGGA+AGG + tig0015874:38859-38878 Msa1356830:CDS 40.0%
AACCTTCCTGGTTTAAAAGG+AGG - tig0015874:38864-38883 Msa1356830:intergenic 40.0%
GGAAACCTTCCTGGTTTAAA+AGG - tig0015874:38867-38886 Msa1356830:intergenic 40.0%
!!! AGGTTTCCTTGTTTTGGAAC+AGG + tig0015874:38879-38898 Msa1356830:CDS 40.0%
ATGCATCCTGTTCCAAAACA+AGG - tig0015874:38888-38907 Msa1356830:intergenic 40.0%
! ATTGATGACAGAAGATGGGT+TGG - tig0015874:38914-38933 Msa1356830:intergenic 40.0%
AACCCATCTTCTGTCATCAA+TGG + tig0015874:38913-38932 Msa1356830:CDS 40.0%
! GTCCATTGATGACAGAAGAT+GGG - tig0015874:38918-38937 Msa1356830:intergenic 40.0%
! TGTCCATTGATGACAGAAGA+TGG - tig0015874:38919-38938 Msa1356830:intergenic 40.0%
! CTCAAGTAAAGCATCAACCA+AGG - tig0015874:39122-39141 Msa1356830:intergenic 40.0%
TTGAGAGCTGATACAGTTAG+TGG + tig0015874:39137-39156 Msa1356830:CDS 40.0%
!! GATACAGTTAGTGGATTCTC+TGG + tig0015874:39146-39165 Msa1356830:CDS 40.0%
GTGGTTACCATTATGACACA+AGG + tig0015874:39168-39187 Msa1356830:CDS 40.0%
GGTTACCATTATGACACAAG+GGG + tig0015874:39170-39189 Msa1356830:CDS 40.0%
GGCAAACACATCACACATTT+AGG - tig0015874:39397-39416 Msa1356830:intergenic 40.0%
! CACACTTCGAAATGTTTCTG+TGG - tig0015874:39445-39464 Msa1356830:intergenic 40.0%
GTGTCTCTTGTTAGTCACTT+TGG - tig0015874:39554-39573 Msa1356830:intergenic 40.0%
ACCTTAGATGTCAAGAAAGG+AGG + tig0015874:39741-39760 Msa1356830:CDS 40.0%
TCCTCCTTTCTTGACATCTA+AGG - tig0015874:39745-39764 Msa1356830:intergenic 40.0%
TTAGATGTCAAGAAAGGAGG+AGG + tig0015874:39744-39763 Msa1356830:CDS 40.0%
AACAACTTCCCATGTCTAGA+AGG - tig0015874:39788-39807 Msa1356830:intergenic 40.0%
TTCTAGACATGGGAAGTTGT+TGG + tig0015874:39787-39806 Msa1356830:CDS 40.0%
GGAAGTTGTTGGAAGAACAA+TGG + tig0015874:39798-39817 Msa1356830:CDS 40.0%
GTTAGTACATCTCCATCACA+AGG - tig0015874:39828-39847 Msa1356830:intergenic 40.0%
GACAATTGCCTAAACCTGTA+GGG - tig0015874:39908-39927 Msa1356830:intergenic 40.0%
TCTGGTGTGATATGAAATGG+TGG - tig0015874:39930-39949 Msa1356830:intergenic 40.0%
AGCTGAATAAGGGAAATTGG+CGG - tig0015874:39979-39998 Msa1356830:intergenic 40.0%
TATCACTATTACTGTGCTCC+AGG + tig0015874:39999-40018 Msa1356830:CDS 40.0%
! TCTAAATGTTGAGCATTGCC+TGG - tig0015874:40020-40039 Msa1356830:intergenic 40.0%
TGAACTATCTCTTGTGCTTG+AGG - tig0015874:40077-40096 Msa1356830:intergenic 40.0%
TACTCACTCCAAATAGGATG+AGG - tig0015874:40107-40126 Msa1356830:intergenic 40.0%
! CATCCTATTTGGAGTGAGTA+TGG + tig0015874:40107-40126 Msa1356830:CDS 40.0%
! AAAAAAGGTGATGGTTGGGT+TGG + tig0015874:40140-40159 Msa1356830:CDS 40.0%
TGGATGGAGGGTCTAATATT+AGG - tig0015874:38127-38146 Msa1356830:intergenic 40.0%
! ATTGGTCTGAGAATGAGTTG+TGG - tig0015874:38251-38270 Msa1356830:intergenic 40.0%
GCAAAAATTCCAAGCTTCGA+AGG - tig0015874:38323-38342 Msa1356830:intergenic 40.0%
CAAAACATTCAGCTGCTCTT+GGG - tig0015874:38381-38400 Msa1356830:intergenic 40.0%
TCAAAACATTCAGCTGCTCT+TGG - tig0015874:38382-38401 Msa1356830:intergenic 40.0%
! TCATTTTACAACTGTCTCCG+AGG + tig0015874:38568-38587 Msa1356830:intron 40.0%
ACAACGGTTCAAAATCACCT+CGG - tig0015874:38588-38607 Msa1356830:intergenic 40.0%
AGAACCTGGCAATACAACAA+CGG - tig0015874:38604-38623 Msa1356830:intergenic 40.0%
GTGAAGTTAAAGACACACCA+AGG + tig0015874:38754-38773 Msa1356830:CDS 40.0%
GGAAATTATGACACTAGGTC+TGG + tig0015874:38810-38829 Msa1356830:CDS 40.0%
! TCTGGTTTATGTCCTCAAGA+TGG + tig0015874:38828-38847 Msa1356830:CDS 40.0%
! TACCTCCTTTTAAACCAGGA+AGG + tig0015874:38859-38878 Msa1356830:CDS 40.0%
AACCTTCCTGGTTTAAAAGG+AGG - tig0015874:38864-38883 Msa1356830:intergenic 40.0%
GGAAACCTTCCTGGTTTAAA+AGG - tig0015874:38867-38886 Msa1356830:intergenic 40.0%
!!! AGGTTTCCTTGTTTTGGAAC+AGG + tig0015874:38879-38898 Msa1356830:CDS 40.0%
ATGCATCCTGTTCCAAAACA+AGG - tig0015874:38888-38907 Msa1356830:intergenic 40.0%
! ATTGATGACAGAAGATGGGT+TGG - tig0015874:38914-38933 Msa1356830:intergenic 40.0%
AACCCATCTTCTGTCATCAA+TGG + tig0015874:38913-38932 Msa1356830:CDS 40.0%
! GTCCATTGATGACAGAAGAT+GGG - tig0015874:38918-38937 Msa1356830:intergenic 40.0%
! TGTCCATTGATGACAGAAGA+TGG - tig0015874:38919-38938 Msa1356830:intergenic 40.0%
! CTCAAGTAAAGCATCAACCA+AGG - tig0015874:39122-39141 Msa1356830:intergenic 40.0%
TTGAGAGCTGATACAGTTAG+TGG + tig0015874:39137-39156 Msa1356830:CDS 40.0%
!! GATACAGTTAGTGGATTCTC+TGG + tig0015874:39146-39165 Msa1356830:CDS 40.0%
GTGGTTACCATTATGACACA+AGG + tig0015874:39168-39187 Msa1356830:CDS 40.0%
GGTTACCATTATGACACAAG+GGG + tig0015874:39170-39189 Msa1356830:CDS 40.0%
GGCAAACACATCACACATTT+AGG - tig0015874:39397-39416 Msa1356830:intergenic 40.0%
! CACACTTCGAAATGTTTCTG+TGG - tig0015874:39445-39464 Msa1356830:intergenic 40.0%
GTGTCTCTTGTTAGTCACTT+TGG - tig0015874:39554-39573 Msa1356830:intergenic 40.0%
ACCTTAGATGTCAAGAAAGG+AGG + tig0015874:39741-39760 Msa1356830:CDS 40.0%
TCCTCCTTTCTTGACATCTA+AGG - tig0015874:39745-39764 Msa1356830:intergenic 40.0%
TTAGATGTCAAGAAAGGAGG+AGG + tig0015874:39744-39763 Msa1356830:CDS 40.0%
AACAACTTCCCATGTCTAGA+AGG - tig0015874:39788-39807 Msa1356830:intergenic 40.0%
TTCTAGACATGGGAAGTTGT+TGG + tig0015874:39787-39806 Msa1356830:CDS 40.0%
GGAAGTTGTTGGAAGAACAA+TGG + tig0015874:39798-39817 Msa1356830:CDS 40.0%
GTTAGTACATCTCCATCACA+AGG - tig0015874:39828-39847 Msa1356830:intergenic 40.0%
GACAATTGCCTAAACCTGTA+GGG - tig0015874:39908-39927 Msa1356830:intergenic 40.0%
TCTGGTGTGATATGAAATGG+TGG - tig0015874:39930-39949 Msa1356830:intergenic 40.0%
AGCTGAATAAGGGAAATTGG+CGG - tig0015874:39979-39998 Msa1356830:intergenic 40.0%
TATCACTATTACTGTGCTCC+AGG + tig0015874:39999-40018 Msa1356830:CDS 40.0%
! TCTAAATGTTGAGCATTGCC+TGG - tig0015874:40020-40039 Msa1356830:intergenic 40.0%
TGAACTATCTCTTGTGCTTG+AGG - tig0015874:40077-40096 Msa1356830:intergenic 40.0%
TACTCACTCCAAATAGGATG+AGG - tig0015874:40107-40126 Msa1356830:intergenic 40.0%
! CATCCTATTTGGAGTGAGTA+TGG + tig0015874:40107-40126 Msa1356830:CDS 40.0%
! AAAAAAGGTGATGGTTGGGT+TGG + tig0015874:40140-40159 Msa1356830:CDS 40.0%
ATTTGGCTAAGGCTAGTGGA+AGG + tig0015874:38097-38116 Msa1356830:five_prime_UTR 45.0%
! AAAGGAGCATGTTGGATGGA+GGG - tig0015874:38139-38158 Msa1356830:intergenic 45.0%
! TCAAAGGCAAAGGAGCATGT+TGG - tig0015874:38147-38166 Msa1356830:intergenic 45.0%
AACATGCTCCTTTGCCTTTG+AGG + tig0015874:38146-38165 Msa1356830:five_prime_UTR 45.0%
ATGAGTTGTGGACACAAGAG+AGG - tig0015874:38239-38258 Msa1356830:intergenic 45.0%
GACCATCTCTTTGCATTCCT+GGG - tig0015874:38291-38310 Msa1356830:intergenic 45.0%
AGACCATCTCTTTGCATTCC+TGG - tig0015874:38292-38311 Msa1356830:intergenic 45.0%
TAAGAGTAGCCTTCGAAGCT+TGG + tig0015874:38311-38330 Msa1356830:CDS 45.0%
TGAACCGTTGTTGTATTGCC+AGG + tig0015874:38597-38616 Msa1356830:intron 45.0%
ACCTTGTGAATCAGAGAACC+TGG - tig0015874:38618-38637 Msa1356830:intergenic 45.0%
TTAAAGACACACCAAGGCCA+TGG + tig0015874:38760-38779 Msa1356830:CDS 45.0%
ATCCAAAATTGCCATGGCCT+TGG - tig0015874:38774-38793 Msa1356830:intergenic 45.0%
! GGTACCCTTTTACCATCTTG+AGG - tig0015874:38843-38862 Msa1356830:intergenic 45.0%
!! AGGGTACCTCCTTTTAAACC+AGG + tig0015874:38855-38874 Msa1356830:CDS 45.0%
CCAAAACAAGGAAACCTTCC+TGG - tig0015874:38876-38895 Msa1356830:intergenic 45.0%
!! CCAGGAAGGTTTCCTTGTTT+TGG + tig0015874:38873-38892 Msa1356830:CDS 45.0%
CTGTCATCAATGGACAAAGC+TGG + tig0015874:38923-38942 Msa1356830:CDS 45.0%
CATCAATGGACAAAGCTGGA+AGG + tig0015874:38927-38946 Msa1356830:CDS 45.0%
CTGGAAGGTGATGTAATGAG+AGG + tig0015874:38942-38961 Msa1356830:CDS 45.0%
GAAGGTGATGTAATGAGAGG+AGG + tig0015874:38945-38964 Msa1356830:CDS 45.0%
!! ACAGTTAGTGGATTCTCTGG+TGG + tig0015874:39149-39168 Msa1356830:CDS 45.0%
GCATTCCCCTTGTGTCATAA+TGG - tig0015874:39178-39197 Msa1356830:intergenic 45.0%
AACAATGGTGCACCTTGTGA+TGG + tig0015874:39813-39832 Msa1356830:CDS 45.0%
TCAATCCAGAAACTCCAGCT+TGG + tig0015874:39877-39896 Msa1356830:CDS 45.0%
GGACAATTGCCTAAACCTGT+AGG - tig0015874:39909-39928 Msa1356830:intergenic 45.0%
AGGACTTGGGAACTTGATGT+TGG + tig0015874:40170-40189 Msa1356830:CDS 45.0%
ACTTGGGAACTTGATGTTGG+TGG + tig0015874:40173-40192 Msa1356830:CDS 45.0%
ATTTGGCTAAGGCTAGTGGA+AGG + tig0015874:38097-38116 Msa1356830:five_prime_UTR 45.0%
! AAAGGAGCATGTTGGATGGA+GGG - tig0015874:38139-38158 Msa1356830:intergenic 45.0%
! TCAAAGGCAAAGGAGCATGT+TGG - tig0015874:38147-38166 Msa1356830:intergenic 45.0%
AACATGCTCCTTTGCCTTTG+AGG + tig0015874:38146-38165 Msa1356830:five_prime_UTR 45.0%
ATGAGTTGTGGACACAAGAG+AGG - tig0015874:38239-38258 Msa1356830:intergenic 45.0%
GACCATCTCTTTGCATTCCT+GGG - tig0015874:38291-38310 Msa1356830:intergenic 45.0%
AGACCATCTCTTTGCATTCC+TGG - tig0015874:38292-38311 Msa1356830:intergenic 45.0%
TAAGAGTAGCCTTCGAAGCT+TGG + tig0015874:38311-38330 Msa1356830:CDS 45.0%
TGAACCGTTGTTGTATTGCC+AGG + tig0015874:38597-38616 Msa1356830:intron 45.0%
ACCTTGTGAATCAGAGAACC+TGG - tig0015874:38618-38637 Msa1356830:intergenic 45.0%
TTAAAGACACACCAAGGCCA+TGG + tig0015874:38760-38779 Msa1356830:CDS 45.0%
ATCCAAAATTGCCATGGCCT+TGG - tig0015874:38774-38793 Msa1356830:intergenic 45.0%
! GGTACCCTTTTACCATCTTG+AGG - tig0015874:38843-38862 Msa1356830:intergenic 45.0%
!! AGGGTACCTCCTTTTAAACC+AGG + tig0015874:38855-38874 Msa1356830:CDS 45.0%
CCAAAACAAGGAAACCTTCC+TGG - tig0015874:38876-38895 Msa1356830:intergenic 45.0%
!! CCAGGAAGGTTTCCTTGTTT+TGG + tig0015874:38873-38892 Msa1356830:CDS 45.0%
CTGTCATCAATGGACAAAGC+TGG + tig0015874:38923-38942 Msa1356830:CDS 45.0%
CATCAATGGACAAAGCTGGA+AGG + tig0015874:38927-38946 Msa1356830:CDS 45.0%
CTGGAAGGTGATGTAATGAG+AGG + tig0015874:38942-38961 Msa1356830:CDS 45.0%
GAAGGTGATGTAATGAGAGG+AGG + tig0015874:38945-38964 Msa1356830:CDS 45.0%
!! ACAGTTAGTGGATTCTCTGG+TGG + tig0015874:39149-39168 Msa1356830:CDS 45.0%
GCATTCCCCTTGTGTCATAA+TGG - tig0015874:39178-39197 Msa1356830:intergenic 45.0%
AACAATGGTGCACCTTGTGA+TGG + tig0015874:39813-39832 Msa1356830:CDS 45.0%
TCAATCCAGAAACTCCAGCT+TGG + tig0015874:39877-39896 Msa1356830:CDS 45.0%
GGACAATTGCCTAAACCTGT+AGG - tig0015874:39909-39928 Msa1356830:intergenic 45.0%
AGGACTTGGGAACTTGATGT+TGG + tig0015874:40170-40189 Msa1356830:CDS 45.0%
ACTTGGGAACTTGATGTTGG+TGG + tig0015874:40173-40192 Msa1356830:CDS 45.0%
! CAAAGGAGCATGTTGGATGG+AGG - tig0015874:38140-38159 Msa1356830:intergenic 50.0%
! AGGCAAAGGAGCATGTTGGA+TGG - tig0015874:38143-38162 Msa1356830:intergenic 50.0%
CAGACCAATGTCTCAGCTGT+AGG + tig0015874:38262-38281 Msa1356830:CDS 50.0%
GTCTCCTACAGCTGAGACAT+TGG - tig0015874:38269-38288 Msa1356830:intergenic 50.0%
GACCCAGGAATGCAAAGAGA+TGG + tig0015874:38286-38305 Msa1356830:CDS 50.0%
TGGTCAAGAAGCTCCTCACA+TGG + tig0015874:38351-38370 Msa1356830:CDS 50.0%
GGTCAAGAAGCTCCTCACAT+GGG + tig0015874:38352-38371 Msa1356830:CDS 50.0%
GCCAGGTTCTCTGATTCACA+AGG + tig0015874:38614-38633 Msa1356830:intron 50.0%
GGTGTAGGAGAGTCATTACC+TGG + tig0015874:38660-38679 Msa1356830:intron 50.0%
ATGTCTTCTGGTCTCAGACC+AGG - tig0015874:38681-38700 Msa1356830:intergenic 50.0%
! CACCAAGGCCATGGCAATTT+TGG + tig0015874:38769-38788 Msa1356830:CDS 50.0%
CTACACCAAGCTGGAGTTTC+TGG - tig0015874:39885-39904 Msa1356830:intergenic 50.0%
TGGTGTAGCCCTACAGGTTT+AGG + tig0015874:39897-39916 Msa1356830:CDS 50.0%
!! ATGGTTGGGTTGGTGATGCA+AGG + tig0015874:40150-40169 Msa1356830:CDS 50.0%
!! GGTTGGTGATGCAAGGACTT+GGG + tig0015874:40157-40176 Msa1356830:CDS 50.0%
! CAAAGGAGCATGTTGGATGG+AGG - tig0015874:38140-38159 Msa1356830:intergenic 50.0%
! AGGCAAAGGAGCATGTTGGA+TGG - tig0015874:38143-38162 Msa1356830:intergenic 50.0%
CAGACCAATGTCTCAGCTGT+AGG + tig0015874:38262-38281 Msa1356830:CDS 50.0%
GTCTCCTACAGCTGAGACAT+TGG - tig0015874:38269-38288 Msa1356830:intergenic 50.0%
GACCCAGGAATGCAAAGAGA+TGG + tig0015874:38286-38305 Msa1356830:CDS 50.0%
TGGTCAAGAAGCTCCTCACA+TGG + tig0015874:38351-38370 Msa1356830:CDS 50.0%
GGTCAAGAAGCTCCTCACAT+GGG + tig0015874:38352-38371 Msa1356830:CDS 50.0%
GCCAGGTTCTCTGATTCACA+AGG + tig0015874:38614-38633 Msa1356830:intron 50.0%
GGTGTAGGAGAGTCATTACC+TGG + tig0015874:38660-38679 Msa1356830:intron 50.0%
ATGTCTTCTGGTCTCAGACC+AGG - tig0015874:38681-38700 Msa1356830:intergenic 50.0%
! CACCAAGGCCATGGCAATTT+TGG + tig0015874:38769-38788 Msa1356830:CDS 50.0%
CTACACCAAGCTGGAGTTTC+TGG - tig0015874:39885-39904 Msa1356830:intergenic 50.0%
TGGTGTAGCCCTACAGGTTT+AGG + tig0015874:39897-39916 Msa1356830:CDS 50.0%
!! ATGGTTGGGTTGGTGATGCA+AGG + tig0015874:40150-40169 Msa1356830:CDS 50.0%
!! GGTTGGTGATGCAAGGACTT+GGG + tig0015874:40157-40176 Msa1356830:CDS 50.0%
!! GGGTTGGTGATGCAAGGACT+TGG + tig0015874:40156-40175 Msa1356830:CDS 55.0%
!! GGGTTGGTGATGCAAGGACT+TGG + tig0015874:40156-40175 Msa1356830:CDS 55.0%
GTCTCAGCTGTAGGAGACCC+AGG + tig0015874:38271-38290 Msa1356830:CDS 60.0%
GCTCTTGGGCTACCCATGTG+AGG - tig0015874:38367-38386 Msa1356830:intergenic 60.0%
CCTGTAGGGCTACACCAAGC+TGG - tig0015874:39894-39913 Msa1356830:intergenic 60.0%
!! CCAGCTTGGTGTAGCCCTAC+AGG + tig0015874:39891-39910 Msa1356830:CDS 60.0%
GTCTCAGCTGTAGGAGACCC+AGG + tig0015874:38271-38290 Msa1356830:CDS 60.0%
GCTCTTGGGCTACCCATGTG+AGG - tig0015874:38367-38386 Msa1356830:intergenic 60.0%
CCTGTAGGGCTACACCAAGC+TGG - tig0015874:39894-39913 Msa1356830:intergenic 60.0%
!! CCAGCTTGGTGTAGCCCTAC+AGG + tig0015874:39891-39910 Msa1356830:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0015874 gene 37940 40286 37940 ID=Msa1356830;Name=Msa1356830
tig0015874 mRNA 37940 40286 37940 ID=Msa1356830-mRNA-1;Parent=Msa1356830;Name=Msa1356830-mRNA-1;_AED=0.18;_eAED=0.18;_QI=241|0|0.33|1|1|1|3|0|441
tig0015874 exon 37940 38412 37940 ID=Msa1356830-mRNA-1:exon:10144;Parent=Msa1356830-mRNA-1
tig0015874 exon 38667 39205 38667 ID=Msa1356830-mRNA-1:exon:10145;Parent=Msa1356830-mRNA-1
tig0015874 exon 39732 40286 39732 ID=Msa1356830-mRNA-1:exon:10146;Parent=Msa1356830-mRNA-1
tig0015874 five_prime_UTR 37940 38180 37940 ID=Msa1356830-mRNA-1:five_prime_utr;Parent=Msa1356830-mRNA-1
tig0015874 CDS 38181 38412 38181 ID=Msa1356830-mRNA-1:cds;Parent=Msa1356830-mRNA-1
tig0015874 CDS 38667 39205 38667 ID=Msa1356830-mRNA-1:cds;Parent=Msa1356830-mRNA-1
tig0015874 CDS 39732 40286 39732 ID=Msa1356830-mRNA-1:cds;Parent=Msa1356830-mRNA-1
Gene Sequence

>Msa1356830

ATGGAGAAACAGTTGAAGAAGTTGTTTGTGTTAACAAATGTACTTCTTTTATGTGCCTCTCTTGTGTCCACAACTCATTCTCAGACCAATGTCTCAGCTGTAGGAGACCCAGGAATGCAAAGAGATGGTCTAAGAGTAGCCTTCGAAGCTTGGAATTTTTGCAATGAAGTTGGTCAAGAAGCTCCTCACATGGGTAGCCCAAGAGCAGCTGAATGTTTTGATCTTTCACAAGGAGAGTCATTACCTGGTCTGAGACCAGAAGACATAAACAATATAGATCTTTATGCTGTTCAAAAGGAACTGTATTTAGGTTCTTTATGTGAAGTTAAAGACACACCAAGGCCATGGCAATTTTGGATGATAATGCTAAAAAATGGAAATTATGACACTAGGTCTGGTTTATGTCCTCAAGATGGTAAAAGGGTACCTCCTTTTAAACCAGGAAGGTTTCCTTGTTTTGGAACAGGATGCATGAACCAACCCATCTTCTGTCATCAATGGACAAAGCTGGAAGGTGATGTAATGAGAGGAGGATTTAATGGTACTTATGATTTGGATTCTAGTTGTAGAGATAGTGGACTTGATGATAATAACAATCTTTCATTTTATGAGGTGGTTTGGGAGAAGAAAGTTAATGTTGGGAGTTGGTTGTTCAAGCATAAGTTAAAGACTTCAAAGAAATATCCTTGGTTGATGCTTTACTTGAGAGCTGATACAGTTAGTGGATTCTCTGGTGGTTACCATTATGACACAAGGGGAATGCTTAAAGCTGTGAGGTTAACCTTAGATGTCAAGAAAGGAGGAGGATCCAAGAGTCAATTCTACCTTCTAGACATGGGAAGTTGTTGGAAGAACAATGGTGCACCTTGTGATGGAGATGTACTAACTGATGTCACTAGATACAGTGAAATGATCATCAATCCAGAAACTCCAGCTTGGTGTAGCCCTACAGGTTTAGGCAATTGTCCACCATTTCATATCACACCAGATGACAAAAAGATATTCAGAAATGACACCGCCAATTTCCCTTATTCAGCTTATCACTATTACTGTGCTCCAGGCAATGCTCAACATTTAGAGCAACCTGTTAGTACTTGTGATCCTTATAGTAATCCTCAAGCACAAGAGATAGTTCAGTTATTGCCTCATCCTATTTGGAGTGAGTATGGTTATCCCATTAAAAAAGGTGATGGTTGGGTTGGTGATGCAAGGACTTGGGAACTTGATGTTGGTGGCCTAGCAAGTAGACTTTACTTCTATCAGGTCAATAATTCAATTACCACTCTACTTTTGGAAACTTATGAGTCATTACATTACATCACATGA

Protein sequence

>Msa1356830

MEKQLKKLFVLTNVLLLCASLVSTTHSQTNVSAVGDPGMQRDGLRVAFEAWNFCNEVGQEAPHMGSPRAAECFDLSQGESLPGLRPEDINNIDLYAVQKELYLGSLCEVKDTPRPWQFWMIMLKNGNYDTRSGLCPQDGKRVPPFKPGRFPCFGTGCMNQPIFCHQWTKLEGDVMRGGFNGTYDLDSSCRDSGLDDNNNLSFYEVVWEKKVNVGSWLFKHKLKTSKKYPWLMLYLRADTVSGFSGGYHYDTRGMLKAVRLTLDVKKGGGSKSQFYLLDMGSCWKNNGAPCDGDVLTDVTRYSEMIINPETPAWCSPTGLGNCPPFHITPDDKKIFRNDTANFPYSAYHYYCAPGNAQHLEQPVSTCDPYSNPQAQEIVQLLPHPIWSEYGYPIKKGDGWVGDARTWELDVGGLASRLYFYQVNNSITTLLLETYESLHYIT*