AlfalfaGEDB | Msa0589510

M. sativa cultivar zhongmu-4 / Msa0589510

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0589510	XP_039689308.1	46.111	180	83	4	525	703	700	866	9.11e-29	135
Msa0589510	XP_039689308.1	89.474	684	27	2	1	639	1	684	0.0	1191

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0589510	sp\|Q9LZV7\|PXC2_ARATH	42.186	787	293	14	7	638	8	787	2.13e-167	508
Msa0589510	sp\|Q9LZV7\|PXC2_ARATH	47.253	91	48	0	606	696	874	964	7.40e-18	92.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0589510	G7JIA7	46.111	180	83	4	525	703	700	866	4.35e-29	135
Msa0589510	G7JIA7	89.474	684	27	2	1	639	1	684	0.0	1191

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa0589510	0.808114	3.630918e-50	-8.615850e-47
Msa0002710	Msa0589510	0.800135	1.661436e-48	-8.615850e-47
Msa0003700	Msa0589510	0.812222	4.725602e-51	-8.615850e-47
Msa0005890	Msa0589510	0.814122	1.809285e-51	-8.615850e-47
Msa0014990	Msa0589510	0.803648	3.152765e-49	-8.615850e-47
Msa0017510	Msa0589510	0.826827	2.190323e-54	-8.615850e-47
Msa0026130	Msa0589510	0.808389	3.173009e-50	-8.615850e-47
Msa0052680	Msa0589510	0.805342	1.397981e-49	-8.615850e-47
Msa0061340	Msa0589510	0.809235	2.091990e-50	-8.615850e-47
Msa0069330	Msa0589510	0.817258	3.619866e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0589510	MtrunA17_Chr4g0012841	89.474	684	27	2	1	639	1	684	0.0	1191
Msa0589510	MtrunA17_Chr4g0012841	46.111	180	83	4	525	703	700	866	8.38e-33	135
Msa0589510	MtrunA17_Chr7g0244931	51.117	761	237	12	10	639	16	772	0.0	682
Msa0589510	MtrunA17_Chr7g0244931	52.632	95	45	0	606	700	857	951	1.24e-24	110
Msa0589510	MtrunA17_Chr3g0128731	41.495	776	294	12	20	638	32	804	1.89e-179	537
Msa0589510	MtrunA17_Chr3g0128731	49.485	97	47	1	606	700	890	986	4.36e-22	102
Msa0589510	MtrunA17_Chr7g0222321	34.134	791	351	18	11	639	50	832	3.46e-105	343
Msa0589510	MtrunA17_Chr5g0398441	31.662	698	376	15	7	624	15	691	1.51e-74	258
Msa0589510	MtrunA17_Chr1g0201241	35.158	603	336	11	63	639	251	824	2.10e-69	245
Msa0589510	MtrunA17_Chr1g0201241	34.430	395	206	10	19	405	22	371	1.58e-43	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0589510	AT5G01890.1	42.186	787	293	14	7	638	8	787	2.16e-168	508
Msa0589510	AT5G01890.1	47.253	91	48	0	606	696	874	964	7.52e-19	92.0
Msa0589510	AT3G56370.1	40.231	778	313	13	10	638	6	780	1.55e-157	480
Msa0589510	AT3G56370.1	32.738	168	100	3	533	700	806	960	7.97e-18	88.6
Msa0589510	AT3G28040.1	36.349	608	358	13	55	639	229	830	1.64e-89	301
Msa0589510	AT3G28040.1	36.515	482	250	9	5	434	8	485	6.72e-76	264
Msa0589510	AT3G28040.1	49.123	57	29	0	635	691	948	1004	3.50e-11	67.4
Msa0589510	AT1G12460.1	31.899	674	353	11	34	624	30	680	3.95e-76	263
Msa0589510	AT1G62950.1	30.935	695	369	14	18	624	16	687	3.03e-74	257
Msa0589510	AT4G20140.1	33.659	615	352	16	60	639	467	1060	3.94e-74	261

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Find 108 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTGTGGCAATTGAA+GGG	0.583952	4_2:-12595098	Msa0589510:CDS
AAACAATTCCAAATCCACCG+CGG	0.803800	4_2:+12595241	None:intergenic
AAACAGTTTCCTATGCTCTC+CGG	0.551088	4_2:+12596934	None:intergenic
AAAGAACAAGGAACAATGAT+AGG	0.402393	4_2:+12597713	None:intergenic
AAAGATGTGTAAGATTTGTG+AGG	0.594556	4_2:+12595724	None:intergenic
AAAGGTGAACTACCAATTGG+TGG	0.547986	4_2:-12595672	Msa0589510:CDS
AAAGTGTAATAAGAAGATCA+TGG	0.548795	4_2:+12597298	None:intergenic
AATTAGGCATCAAAATCTTG+TGG	0.600003	4_2:-12595109	Msa0589510:CDS
AATTGTTGTAATCTGAATTA+GGG	0.284118	4_2:+12595538	None:intergenic
AATTTCACATTCTGGTGGTG+AGG	0.548502	4_2:-12595382	Msa0589510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAACAAGGAACAATGAT+AGG	+	chr4_2:12594452-12594471	None:intergenic	30.0%
CGAAAAACAAACTTTCTTCT+TGG	-	chr4_2:12594559-12594578	Msa0589510:CDS	30.0%
ATGATTATAGTCCTTGCAAT+TGG	-	chr4_2:12594589-12594608	Msa0589510:CDS	30.0%
TGATTATAGTCCTTGCAATT+GGG	-	chr4_2:12594590-12594609	Msa0589510:CDS	30.0%
GAGAAAGTGAAAGAATTTGA+AGG	+	chr4_2:12594819-12594838	None:intergenic	30.0%
TTGAGTGAAAACAATCTCTT+TGG	-	chr4_2:12594907-12594926	Msa0589510:intron	30.0%
CTGAAAGGTGAATTACATTA+TGG	-	chr4_2:12595069-12595088	Msa0589510:CDS	30.0%
GTGAATTACATTATGGAATG+TGG	-	chr4_2:12595076-12595095	Msa0589510:CDS	30.0%
TTGCAAGGGAATTATTTCAA+TGG	-	chr4_2:12595342-12595361	Msa0589510:CDS	30.0%
TGCAAGGGAATTATTTCAAT+GGG	-	chr4_2:12595343-12595362	Msa0589510:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	12594429	12597755	12594429	ID=Msa0589510;Name=Msa0589510
chr4_2	mRNA	12594429	12597755	12594429	ID=Msa0589510-mRNA-1;Parent=Msa0589510;Name=Msa0589510-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0\|0\|1\|1\|1\|4\|0\|703
chr4_2	exon	12597569	12597755	12597569	ID=Msa0589510-mRNA-1:exon:3659;Parent=Msa0589510-mRNA-1
chr4_2	exon	12596506	12597402	12596506	ID=Msa0589510-mRNA-1:exon:3658;Parent=Msa0589510-mRNA-1
chr4_2	exon	12594978	12595810	12594978	ID=Msa0589510-mRNA-1:exon:3657;Parent=Msa0589510-mRNA-1
chr4_2	exon	12594429	12594623	12594429	ID=Msa0589510-mRNA-1:exon:3656;Parent=Msa0589510-mRNA-1
chr4_2	CDS	12597569	12597755	12597569	ID=Msa0589510-mRNA-1:cds;Parent=Msa0589510-mRNA-1
chr4_2	CDS	12596506	12597402	12596506	ID=Msa0589510-mRNA-1:cds;Parent=Msa0589510-mRNA-1
chr4_2	CDS	12594978	12595810	12594978	ID=Msa0589510-mRNA-1:cds;Parent=Msa0589510-mRNA-1
chr4_2	CDS	12594429	12594623	12594429	ID=Msa0589510-mRNA-1:cds;Parent=Msa0589510-mRNA-1

Gene Sequence

>Msa0589510

ATGCAAGATCAATTCATCATCCTATCATTGTTCCTTGTTCTTTTTGGTTCACACCAAGTGATCTCACAAAACCAACCTTTCAATGAAGATATGCTGGGGTTGATTGTGTTCAAAGCAGGTCTAGAAGATCCGAAAAACAAACTTTCTTCTTGGAATGAAGATGATTATAGTCCTTGCAATTGGGAAGGACATATCGGTAAAAGCCTTATGAGATTGCAGTTCCTTCAAATTCTTTCACTTTCTCGGAACAACTTCACGGGGAGAATAAACCATGATCTTCTTATTACACTTTGGAATCTAAAAGTTGTTGATTTGAGTGAAAACAATCTCTTTGGAACAATTCCGGATGAACTTTTTAAACAATGTTGGTCTCTTAGAGTTTTATCGTTCGCGAAAAACAATCTCACGGGTACGATTCCTGACTCTTTGAGTTCATGCTACTCGTTAGCAAGTTTGAACTTTTCGTCTAATCAACTGAAAGGTGAATTACATTATGGAATGTGGTTTTTGAAGGAACTTCAATCTCTTGATCTCTCGAATAACTTTCTTGAAGGAGAGATTCCGGAAGGAATTCAAAACCTATATGATTTGAGAGAGTTAAGGCTAGGGAGGAATTTTTTCAAAGGTAAGATTCCGGAGAGCATAGGAAACTGTTTGCTTTTGAAGTTGATCGATTTCAGTGATAATCTTCTTACTGATATAATTCCAGAGTCGATACAAAGACTCGCCTCATGCACATTACTAAGTTTGCAAGGGAATTATTTCAATGGGAGCATTCCACATTGGATCGGTGAATTGAACAATTTAGAGATATTGAAACTTTCTTCTAATAGATTTTCTGGTCAAATCCCATTTGGCATTGGTGGTCTTAGAAGTTTGCAAGTTTTGAATTTATCTACAAACAATATTTCTGGTTCTATTCCAGTGAGTATAAGAGAGCTTAAATCTTTGTATGTTCTTGATCTAAGTGATAACAAGCTTAATGGAAGCATTCCTTATGAAATAAAAGGAGCAATTTCACTTGGTGAATTGAGGCTGCAAAAGAATTTCTTAGGTGGAAGAATTCCAGTCCAAATTGCAAAATACCTAACAAATCTTCAATATGCAGATTTATCATACAATAAACTCTCTGGAACATTACCTAAAAACCTCACAAATCTTACACATCTTTTCTCATTCAATGTTTCCTATAACAATCTTAAAGGTGAACTACCAATTGGTGGATTCTTCAATACAATCACTCCTTCATTTGTTCGCGGCAATCCTTTATTATGTGGTTCTGTTGTTAATCACTCATGTGATCAATCTTATCATCCAAAACCTATTGTTTTAAACCCTAATTCAGATTACAACAATTCAAGATCTTCCTTGAAAAACCATCATCATAAGATAATGCTTAGTGTTTCGGTCTTTATTGCTATCGGTGCAGCAATTTCTATTGTTGTCGGTATTGTTGCTGTTACTGTTTTAAATATTCATGTTAGGTCTTCAATTTCACATTCTGGTGGTGAGGAATTTAGTTTTTCGCCTGAAAAAGATCCGAAATGCGGACAACTTGTGATGTTTAATGGTGATGTTATTGAGTTTGCGGACGAGGCAAATGATCTTCTTAAAGAAGGTAATGAAATCGGCCGCGGTGGATTTGGAATTGTTTATTGTGTTGTCCTTCGAGATCGGAATTCTGTTGCAATTAAGAAGCTTATAGGTTCAAGTTTGATGAAGTCACGAGATGATTTTGAGAGTGAAGTTCAAAAGCTTGGAAAAATTAGGCATCAAAATCTTGTGGCAATTGAAGGGTATTATTGGAATCCATCTTTTCAGCTTATTATTTATGAGTACTTTTCTAGAGGGAGTTTGCATAAGCTTCTACATGATGATCAAAGCAAAATTGTGTTTTCTTGGAGAGCAAGATTCAAGGATGGAAAAATTGAGCAATGCGTTGATGAGAAGCTCGTTGGTAAATTTTCGCTTGAGGAAGTGACTCCTGTGATAAAATTGGGACTGGTTTGTGCATCACAAGTACCGTCGAATCGTCCCGATATGGCTGAGGTTGTTAACATATTAGAGATGATTCAATGCTCTTCAGAAGGACAACAAGAAGAAATAAAATAA

Protein sequence

>Msa0589510

MQDQFIILSLFLVLFGSHQVISQNQPFNEDMLGLIVFKAGLEDPKNKLSSWNEDDYSPCNWEGHIGKSLMRLQFLQILSLSRNNFTGRINHDLLITLWNLKVVDLSENNLFGTIPDELFKQCWSLRVLSFAKNNLTGTIPDSLSSCYSLASLNFSSNQLKGELHYGMWFLKELQSLDLSNNFLEGEIPEGIQNLYDLRELRLGRNFFKGKIPESIGNCLLLKLIDFSDNLLTDIIPESIQRLASCTLLSLQGNYFNGSIPHWIGELNNLEILKLSSNRFSGQIPFGIGGLRSLQVLNLSTNNISGSIPVSIRELKSLYVLDLSDNKLNGSIPYEIKGAISLGELRLQKNFLGGRIPVQIAKYLTNLQYADLSYNKLSGTLPKNLTNLTHLFSFNVSYNNLKGELPIGGFFNTITPSFVRGNPLLCGSVVNHSCDQSYHPKPIVLNPNSDYNNSRSSLKNHHHKIMLSVSVFIAIGAAISIVVGIVAVTVLNIHVRSSISHSGGEEFSFSPEKDPKCGQLVMFNGDVIEFADEANDLLKEGNEIGRGGFGIVYCVVLRDRNSVAIKKLIGSSLMKSRDDFESEVQKLGKIRHQNLVAIEGYYWNPSFQLIIYEYFSRGSLHKLLHDDQSKIVFSWRARFKDGKIEQCVDEKLVGKFSLEEVTPVIKLGLVCASQVPSNRPDMAEVVNILEMIQCSSEGQQEEIK*