AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0206840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0206840 MtrunA17_Chr2g0305891 84.577 603 21 7 1 558 1 576 0.0 939
Msa0206840 MtrunA17_Chr4g0040431 37.989 179 101 3 341 518 193 362 1.45e-30 123
Msa0206840 MtrunA17_Chr2g0324811 35.821 201 117 4 343 541 179 369 2.72e-30 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0206840 AT5G58000.1 45.552 281 95 7 287 521 173 441 7.39e-73 241
Msa0206840 AT5G58000.2 45.552 281 95 7 287 521 279 547 1.28e-72 243
Msa0206840 AT2G20590.1 34.807 181 110 2 341 521 206 378 3.73e-26 111
Msa0206840 AT2G20590.3 34.807 181 110 2 341 521 193 365 3.79e-26 111
Msa0206840 AT4G28430.1 35.795 176 105 2 346 521 239 406 2.27e-22 100
Msa0206840 AT2G20590.2 35.593 118 75 1 341 458 206 322 2.65e-15 77.8

Find 131 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGGTTTGGAGAAATTT+TGG 0.157130 2_1:+36902626 None:intergenic
CTAGACTCTGCAACTTGTTT+TGG 0.174874 2_1:+36902458 None:intergenic
TGAAAATTTCTTACTTGAAT+TGG 0.195478 2_1:+36902609 None:intergenic
TTTCCTTTGGAAATCTGAAT+TGG 0.240670 2_1:+36903384 None:intergenic
TTATTATTACCTGCAAATTA+AGG 0.240889 2_1:+36901962 None:intergenic
CTACTGCGTTCTTCTTCTTT+TGG 0.250422 2_1:+36902493 None:intergenic
GATATGGCCCATTTGTCTTT+AGG 0.252913 2_1:-36903643 Msa0206840:five_prime_UTR
GTGGAAGTTTCATAACTATT+TGG 0.254654 2_1:-36901360 Msa0206840:CDS
TTGTGTTGTTTCTGTCTAAC+TGG 0.259168 2_1:+36899155 None:intergenic
TTTCTTCTGTTCTGCTTCAT+TGG 0.263708 2_1:+36902786 None:intergenic
TTCACAGTAACTTTGGATTC+TGG 0.268906 2_1:+36902889 None:intergenic
TCCATTAACCACTTATGATA+TGG 0.269860 2_1:-36903659 Msa0206840:five_prime_UTR
GACAAGAATTCATTCAAATA+AGG 0.278389 2_1:+36901532 None:intergenic
TCTATAGATCCTTAATTTGC+AGG 0.280057 2_1:-36901971 Msa0206840:intron
ATGAAGAGTGATCAAGTTAA+AGG 0.286954 2_1:-36903522 Msa0206840:CDS
GCCATATCATAAGTGGTTAA+TGG 0.298531 2_1:+36903658 None:intergenic
AAAAGGTAAAGTAGTTAAAT+TGG 0.309487 2_1:-36903606 Msa0206840:five_prime_UTR
AAAGAATGAATTTGATGAAT+TGG 0.314502 2_1:-36903136 Msa0206840:CDS
TTTCTTCGGTTCTGCTTCAT+TGG 0.314912 2_1:+36902756 None:intergenic
TCATTAACATTCTTATTGAT+TGG 0.318213 2_1:+36903216 None:intergenic
CATCTGTTGTTGCTCGCATT+TGG 0.323883 2_1:-36899385 Msa0206840:CDS
ATGAAATGGAAGACTCTTCT+TGG 0.325297 2_1:+36903332 None:intergenic
TGCAATTTGGATGCTGAAAT+TGG 0.325517 2_1:-36901560 Msa0206840:CDS
GAAAATTTCTTACTTGAATT+GGG 0.330039 2_1:+36902610 None:intergenic
TAGTTAATAACAAATCCATT+AGG 0.332645 2_1:-36898947 Msa0206840:three_prime_UTR
TTTCTTACTTGAATTGGGTT+TGG 0.336832 2_1:+36902615 None:intergenic
GAATCCTTTCTTGACTTTGT+TGG 0.339840 2_1:+36899121 None:intergenic
TAAGAGAACAAGATGCAATT+TGG 0.344866 2_1:-36901573 Msa0206840:CDS
CCAACATGAACCACTGATTC+AGG 0.347212 2_1:+36903006 None:intergenic
AGTCAAGAAAGGATTCTAAA+AGG 0.352319 2_1:-36899114 Msa0206840:exon
TCTAAAATCCTAAAGACAAA+TGG 0.357727 2_1:+36903635 None:intergenic
ATACTATCAACAACACTATA+TGG 0.360600 2_1:-36899234 Msa0206840:CDS
TAGGCATATTCGGTCTAGTA+TGG 0.366112 2_1:-36899415 Msa0206840:CDS
ATCGGGCTTCTTGTATGAAA+TGG 0.367236 2_1:+36903318 None:intergenic
CTTATCTTTCTTGATTGAAT+CGG 0.369410 2_1:+36903300 None:intergenic
AGTTAATAACAAATCCATTA+GGG 0.376277 2_1:-36898946 Msa0206840:three_prime_UTR
TTCTTGTTTCACAGTAACTT+TGG 0.383775 2_1:+36902882 None:intergenic
ACTACAAGAGGAACAGAAAC+TGG 0.385936 2_1:+36902688 None:intergenic
TTGGCATTCACCACTTTCTT+CGG 0.387650 2_1:+36902742 None:intergenic
ATCTGTTGTTGCTCGCATTT+GGG 0.390664 2_1:-36899384 Msa0206840:CDS
AGATTGAGAAGAACCTCAAT+TGG 0.400011 2_1:-36903432 Msa0206840:CDS
TTATCTTTCTTGATTGAATC+GGG 0.401479 2_1:+36903301 None:intergenic
TTCCTTTGGAAATCTGAATT+GGG 0.411037 2_1:+36903385 None:intergenic
TTTCATAACTATTTGGAAGA+TGG 0.416263 2_1:-36901353 Msa0206840:CDS
GAATTTGATGAATTGGATGA+TGG 0.435863 2_1:-36903129 Msa0206840:CDS
GAATACGAAGAGCAGATCTT+TGG 0.436812 2_1:+36901185 None:intergenic
AGAAGAGGTGTGGTTGCTGC+AGG 0.437201 2_1:-36903564 Msa0206840:CDS
CATTAGGGTTCAATAGCAAA+AGG 0.437244 2_1:-36898931 Msa0206840:three_prime_UTR
CAACCTATACCATCAAAATC+AGG 0.444890 2_1:+36901134 None:intergenic
GCTGTGGCTCTAGGCATATT+CGG 0.445263 2_1:-36899425 Msa0206840:CDS
TTTGTGATGAAATCTCATAT+TGG 0.448436 2_1:+36902723 None:intergenic
AAGGGTGGTGGTGAAGCTGC+AGG 0.452129 2_1:-36903264 Msa0206840:CDS
TCAGCACAATTAACTGCATA+TGG 0.452909 2_1:-36901164 Msa0206840:CDS
ATTACCTTCATTGTGGTGCC+AGG 0.462054 2_1:+36901481 None:intergenic
CTAAAATCCTAAAGACAAAT+GGG 0.470864 2_1:+36903636 None:intergenic
ATTTGGAAGATGGCTAAAAT+CGG 0.474250 2_1:-36901343 Msa0206840:intron
TCGTCGATTCCGGGATGCAT+GGG 0.478641 2_1:-36899468 Msa0206840:CDS
GTTGTTGCTCGCATTTGGGC+AGG 0.478972 2_1:-36899380 Msa0206840:intron
TTAATGATTCAATTGAATTG+AGG 0.479489 2_1:-36903200 Msa0206840:CDS
TAGAAGCAATGGAGGTTGGT+GGG 0.485083 2_1:+36903696 None:intergenic
ATAAGTGGTTAATGGATAAG+AGG 0.487292 2_1:+36903666 None:intergenic
TATGCATAGCTATAGTTCTC+AGG 0.490438 2_1:-36898985 Msa0206840:three_prime_UTR
GAATGGGTGGAAGATGAAAC+AGG 0.491736 2_1:-36899203 Msa0206840:CDS
ACTATATGGTGAGGGATGAA+TGG 0.492619 2_1:-36899220 Msa0206840:CDS
TTCGTCGATTCCGGGATGCA+TGG 0.499984 2_1:-36899469 Msa0206840:CDS
AGCAAAAGGGAATAATAGCT+TGG 0.504414 2_1:-36898917 Msa0206840:three_prime_UTR
GAGGCTTGAAGTAGAAGCAA+TGG 0.507360 2_1:+36903685 None:intergenic
AACAATCCCCTACAATCAAA+AGG 0.507778 2_1:-36902663 Msa0206840:CDS
TTAAATTGGTGAATGATCAA+TGG 0.508935 2_1:-36903592 Msa0206840:exon
GTGAAGCTGCAGGGAAATTG+AGG 0.515270 2_1:-36903254 Msa0206840:CDS
GAAACAAGAAGAAAATGATA+TGG 0.517562 2_1:-36902869 Msa0206840:CDS
AAAGAAGAACAAGAACAAGA+AGG 0.522290 2_1:-36903474 Msa0206840:CDS
GATTGAGAAGAACCTCAATT+GGG 0.529558 2_1:-36903431 Msa0206840:CDS
CTATATGGTGAGGGATGAAT+GGG 0.530924 2_1:-36899219 Msa0206840:CDS
CAAATGGGCCATATCATAAG+TGG 0.539279 2_1:+36903651 None:intergenic
AATTTGATGAATTGGATGAT+GGG 0.543422 2_1:-36903128 Msa0206840:CDS
GGGGATTGTTTCACTACAAG+AGG 0.543889 2_1:+36902676 None:intergenic
TCAAAATTCACCTGAATCAG+TGG 0.544044 2_1:-36903016 Msa0206840:CDS
GCTACCAACAAAGTCAAGAA+AGG 0.545347 2_1:-36899125 Msa0206840:CDS
TATGGTTGATGTGAATGAAC+CGG 0.548110 2_1:-36902851 Msa0206840:CDS
GAAGTAGAAGCAATGGAGGT+TGG 0.551783 2_1:+36903692 None:intergenic
AGCCCAATTCAGATTTCCAA+AGG 0.554864 2_1:-36903387 Msa0206840:CDS
GAACAAGAAGGAGGAAATGT+TGG 0.555049 2_1:-36903462 Msa0206840:CDS
GTAGAAGCAATGGAGGTTGG+TGG 0.555238 2_1:+36903695 None:intergenic
TTCTTGAACTCGATCCAACT+CGG 0.555375 2_1:+36903167 None:intergenic
AGATCCTGGCACCACAATGA+AGG 0.555506 2_1:-36901485 Msa0206840:intron
GAATGAGAGCTTTGATGTGA+AGG 0.555849 2_1:-36902923 Msa0206840:CDS
GATAAGATCTGATATGCAGA+AGG 0.555989 2_1:-36903283 Msa0206840:CDS
ATTAGGGTTCAATAGCAAAA+GGG 0.556466 2_1:-36898930 Msa0206840:three_prime_UTR
CAAAACAAGTTGCAGAGTCT+AGG 0.557021 2_1:-36902457 Msa0206840:intron
TGGTTGCTGCAGGGTCAGTG+TGG 0.558063 2_1:-36903554 Msa0206840:CDS
TTGGTTCCATCAGAAATGCA+TGG 0.559390 2_1:+36903351 None:intergenic
TCTCTTTGAAGACCCAATTG+AGG 0.562740 2_1:+36903419 None:intergenic
TGAAGCAGAACCGAAGAAAG+TGG 0.562780 2_1:-36902752 Msa0206840:CDS
TGCATGAATCCCATGCATCC+CGG 0.564871 2_1:+36899459 None:intergenic
GAGGAACCATGCATTTCTGA+TGG 0.565807 2_1:-36903357 Msa0206840:CDS
TGAAGCAGAACAGAAGAAAG+TGG 0.569576 2_1:-36902782 Msa0206840:CDS
TGAGAAAGATGAAAATGTTG+AGG 0.571155 2_1:-36903088 Msa0206840:CDS
TTAAATAATTACCTTCATTG+TGG 0.571660 2_1:+36901474 None:intergenic
AAGAGTGATCAAGTTAAAGG+TGG 0.572772 2_1:-36903519 Msa0206840:CDS
GAGGAAGACGAAATCCGAGT+TGG 0.576151 2_1:-36903181 Msa0206840:CDS
GAAGAACAAGAACAAGAAGG+AGG 0.579849 2_1:-36903471 Msa0206840:CDS
AAGGATTCTAAAAGGATGCA+TGG 0.580634 2_1:-36899106 Msa0206840:exon
AGAAGCAATGGAGGTTGGTG+GGG 0.582003 2_1:+36903697 None:intergenic
TGAATCAGATGGTGATGTTG+TGG 0.584273 2_1:-36902974 Msa0206840:CDS
AGAATTCATTCAAATAAGGT+AGG 0.591737 2_1:+36901536 None:intergenic
GGTTGCTGCAGGGTCAGTGT+GGG 0.592884 2_1:-36903553 Msa0206840:CDS
GAGTAATTCAAAAGCAAATG+TGG 0.600295 2_1:+36899058 None:intergenic
CCTGAATCAGTGGTTCATGT+TGG 0.600898 2_1:-36903006 Msa0206840:CDS
AAACAGGATGTGATGAAGCA+TGG 0.601103 2_1:-36899187 Msa0206840:CDS
TATGGTGAGGGATGAATGGG+TGG 0.602229 2_1:-36899216 Msa0206840:CDS
GAATCAGTGGTTCATGTTGG+TGG 0.602680 2_1:-36903003 Msa0206840:CDS
ATCAACAACACTATATGGTG+AGG 0.602777 2_1:-36899229 Msa0206840:CDS
CAAGAAGGAGGAAATGTTGG+TGG 0.603269 2_1:-36903459 Msa0206840:CDS
GATATCAAGCAATGTTGATG+TGG 0.605869 2_1:-36903040 Msa0206840:CDS
GCTTGAAGTAGAAGCAATGG+AGG 0.611183 2_1:+36903688 None:intergenic
AACAGGATGTGATGAAGCAT+GGG 0.612508 2_1:-36899186 Msa0206840:CDS
TGATCAATGGATAAAAGAAG+AGG 0.617810 2_1:-36903579 Msa0206840:exon
TGAGGAAATTGAGATTGAGA+TGG 0.624660 2_1:-36902947 Msa0206840:CDS
TCTGATATGCAGAAGGGTGG+TGG 0.626002 2_1:-36903276 Msa0206840:CDS
TGGTGATGTTGTGGATGATG+AGG 0.626683 2_1:-36902965 Msa0206840:CDS
GAAGAGGTGTGGTTGCTGCA+GGG 0.627693 2_1:-36903563 Msa0206840:CDS
AGGGTGGTGGTGAAGCTGCA+GGG 0.632751 2_1:-36903263 Msa0206840:CDS
AGATCTGATATGCAGAAGGG+TGG 0.640604 2_1:-36903279 Msa0206840:CDS
TCAACAACACTATATGGTGA+GGG 0.642871 2_1:-36899228 Msa0206840:CDS
AATGGATAAAAGAAGAGGTG+TGG 0.650250 2_1:-36903574 Msa0206840:CDS
GGTGGTGATTCTGAATCAGA+TGG 0.664264 2_1:-36902985 Msa0206840:CDS
ATAAGATCTGATATGCAGAA+GGG 0.678384 2_1:-36903282 Msa0206840:CDS
TGGTTACTATAGCTAGCTAG+TGG 0.681225 2_1:-36899083 Msa0206840:three_prime_UTR
AGATAACTGCAAGATAGACA+AGG 0.701587 2_1:+36901997 None:intergenic
GATTCTAAAAGGATGCATGG+TGG 0.732112 2_1:-36899103 Msa0206840:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTGAAAATGATTATAT+AGG - chr2_1:36902835-36902854 Msa0206840:CDS 10.0%
!!! TTATTATTATTGCTAGTTTT+AGG - chr2_1:36902005-36902024 Msa0206840:intron 15.0%
!!! TATACATATTTTTCATTTTC+AGG - chr2_1:36902095-36902114 Msa0206840:intron 15.0%
!!! ATACATATTTTTCATTTTCA+GGG - chr2_1:36902096-36902115 Msa0206840:intron 15.0%
!! TAATTAATAAATACATCACA+TGG - chr2_1:36902418-36902437 Msa0206840:intron 15.0%
!! AAAAGGTAAAGTAGTTAAAT+TGG - chr2_1:36898882-36898901 Msa0206840:three_prime_UTR 20.0%
!! TCATTAACATTCTTATTGAT+TGG + chr2_1:36899275-36899294 None:intergenic 20.0%
!! TTAATGATTCAATTGAATTG+AGG - chr2_1:36899288-36899307 Msa0206840:intron 20.0%
!! AAAGAATGAATTTGATGAAT+TGG - chr2_1:36899352-36899371 Msa0206840:intron 20.0%
!! GAAAATTTCTTACTTGAATT+GGG + chr2_1:36899881-36899900 None:intergenic 20.0%
!! TGAAAATTTCTTACTTGAAT+TGG + chr2_1:36899882-36899901 None:intergenic 20.0%
!!! TCAGTCAATTTTGTATTTTT+TGG - chr2_1:36899909-36899928 Msa0206840:intron 20.0%
!!! CAGTCAATTTTGTATTTTTT+GGG - chr2_1:36899910-36899929 Msa0206840:intron 20.0%
!!! TGTGTTTTACTAATCTTTTA+AGG - chr2_1:36899965-36899984 Msa0206840:intron 20.0%
!!! ACCAATTTTTGCTTATATTT+TGG - chr2_1:36900356-36900375 Msa0206840:intron 20.0%
!!! CCAATTTTTGCTTATATTTT+GGG - chr2_1:36900357-36900376 Msa0206840:intron 20.0%
!!! CAATATAACTTTTACTGTTT+CGG - chr2_1:36900409-36900428 Msa0206840:intron 20.0%
!! TTATTATTACCTGCAAATTA+AGG + chr2_1:36900529-36900548 None:intergenic 20.0%
!!! TTTTTTTATTCCAAGACATT+TGG - chr2_1:36900786-36900805 Msa0206840:intron 20.0%
!!! ACATTTGGAGTTTATATTTA+AGG - chr2_1:36900801-36900820 Msa0206840:intron 20.0%
!!! TTTTTTTTTTTTATGGGTTC+AGG - chr2_1:36900858-36900877 Msa0206840:intron 20.0%
!!! TTTTTTTTTTTATGGGTTCA+GGG - chr2_1:36900859-36900878 Msa0206840:intron 20.0%
!! TTAAATAATTACCTTCATTG+TGG + chr2_1:36901017-36901036 None:intergenic 20.0%
!!! TAAAATCGGTAAGTTTTTAA+AGG - chr2_1:36901159-36901178 Msa0206840:CDS 20.0%
!!! TACATATCTACTCTTTTATA+CGG - chr2_1:36901450-36901469 Msa0206840:intron 20.0%
!!! CAACATTAAATTTGTTTTTG+TGG - chr2_1:36901515-36901534 Msa0206840:CDS 20.0%
!!! TTGTGGATTTTTTTTTTTTG+AGG - chr2_1:36901532-36901551 Msa0206840:CDS 20.0%
!! AATATCACGTGTATAAAAAA+TGG + chr2_1:36901831-36901850 None:intergenic 20.0%
!!! TCTTTTATTTTGGTAAACTA+GGG - chr2_1:36902559-36902578 Msa0206840:intron 20.0%
!! TCATAATAATCGTAACATAA+TGG - chr2_1:36902597-36902616 Msa0206840:intron 20.0%
!!! ATTGTTTTACATTGACATAT+TGG + chr2_1:36902865-36902884 None:intergenic 20.0%
!!! GATATGATAAAGCAAATTTT+TGG - chr2_1:36902995-36903014 Msa0206840:CDS 20.0%
!! TAGTTAATAACAAATCCATT+AGG - chr2_1:36903541-36903560 Msa0206840:CDS 20.0%
!! AGTTAATAACAAATCCATTA+GGG - chr2_1:36903542-36903561 Msa0206840:CDS 20.0%
!!! TTTCATTTTATGCTTGAATT+TGG - chr2_1:36903651-36903670 Msa0206840:five_prime_UTR 20.0%
! CTAAAATCCTAAAGACAAAT+GGG + chr2_1:36898855-36898874 None:intergenic 25.0%
!! TCTAAAATCCTAAAGACAAA+TGG + chr2_1:36898856-36898875 None:intergenic 25.0%
! TTAAATTGGTGAATGATCAA+TGG - chr2_1:36898896-36898915 Msa0206840:three_prime_UTR 25.0%
! TTATCTTTCTTGATTGAATC+GGG + chr2_1:36899190-36899209 None:intergenic 25.0%
! CTTATCTTTCTTGATTGAAT+CGG + chr2_1:36899191-36899210 None:intergenic 25.0%
! AATTTGATGAATTGGATGAT+GGG - chr2_1:36899360-36899379 Msa0206840:intron 25.0%
! GAAACAAGAAGAAAATGATA+TGG - chr2_1:36899619-36899638 Msa0206840:intron 25.0%
!! TTCAAAACAATCTTCTTTTC+CGG + chr2_1:36899659-36899678 None:intergenic 25.0%
! TTTGTGATGAAATCTCATAT+TGG + chr2_1:36899768-36899787 None:intergenic 25.0%
!!! TTGAATTCCTTTTGATTGTA+GGG + chr2_1:36899835-36899854 None:intergenic 25.0%
!!! TTTGAATTCCTTTTGATTGT+AGG + chr2_1:36899836-36899855 None:intergenic 25.0%
!!! CACACACATTTTCTAAAATT+AGG + chr2_1:36899949-36899968 None:intergenic 25.0%
! TCAACATAAATTGTTGGATT+TGG - chr2_1:36900299-36900318 Msa0206840:intron 25.0%
! CCCAAAATATAAGCAAAAAT+TGG + chr2_1:36900360-36900379 None:intergenic 25.0%
! TAGTGCATTGTTAAATTAGT+TGG - chr2_1:36900587-36900606 Msa0206840:intron 25.0%
! AGTGCATTGTTAAATTAGTT+GGG - chr2_1:36900588-36900607 Msa0206840:intron 25.0%
! AATATAAACTCCAAATGTCT+TGG + chr2_1:36900799-36900818 None:intergenic 25.0%
! TAAGGACAAATTAAATAGTG+AGG - chr2_1:36900819-36900838 Msa0206840:intron 25.0%
!!! TTTTTTTTTTATGGGTTCAG+GGG - chr2_1:36900860-36900879 Msa0206840:intron 25.0%
! AGAATTCATTCAAATAAGGT+AGG + chr2_1:36900955-36900974 None:intergenic 25.0%
! GACAAGAATTCATTCAAATA+AGG + chr2_1:36900959-36900978 None:intergenic 25.0%
! TTTCATAACTATTTGGAAGA+TGG - chr2_1:36901135-36901154 Msa0206840:intron 25.0%
! ATAGTGTAGAATAGATTAGA+CGG - chr2_1:36901377-36901396 Msa0206840:CDS 25.0%
!!! TTTTTGAGGAATTGTTTTTC+TGG - chr2_1:36901546-36901565 Msa0206840:CDS 25.0%
! TCTACATTATTACTATGCAT+TGG + chr2_1:36901887-36901906 None:intergenic 25.0%
! TAGTAATAATGTAGATCTGA+CGG - chr2_1:36901892-36901911 Msa0206840:intron 25.0%
!!! ATTATTGCTAGTTTTAGGTT+TGG - chr2_1:36902010-36902029 Msa0206840:intron 25.0%
!!! GTGACAATTGTCTTTTATTT+TGG - chr2_1:36902549-36902568 Msa0206840:intron 25.0%
!!! GTCTTTTATTTTGGTAAACT+AGG - chr2_1:36902558-36902577 Msa0206840:intron 25.0%
! ATACTATCAACAACACTATA+TGG - chr2_1:36903254-36903273 Msa0206840:CDS 25.0%
! ATAAGTGGTTAATGGATAAG+AGG + chr2_1:36898825-36898844 None:intergenic 30.0%
TCCATTAACCACTTATGATA+TGG - chr2_1:36898829-36898848 Msa0206840:intron 30.0%
!! AGGATTTTAGAGAGAGAAAA+AGG - chr2_1:36898865-36898884 Msa0206840:three_prime_UTR 30.0%
TGATCAATGGATAAAAGAAG+AGG - chr2_1:36898909-36898928 Msa0206840:three_prime_UTR 30.0%
ATGAAGAGTGATCAAGTTAA+AGG - chr2_1:36898966-36898985 Msa0206840:three_prime_UTR 30.0%
AAAGAAGAACAAGAACAAGA+AGG - chr2_1:36899014-36899033 Msa0206840:three_prime_UTR 30.0%
! TTCCTTTGGAAATCTGAATT+GGG + chr2_1:36899106-36899125 None:intergenic 30.0%
! TTTCCTTTGGAAATCTGAAT+TGG + chr2_1:36899107-36899126 None:intergenic 30.0%
ATAAGATCTGATATGCAGAA+GGG - chr2_1:36899206-36899225 Msa0206840:CDS 30.0%
GAATTTGATGAATTGGATGA+TGG - chr2_1:36899359-36899378 Msa0206840:intron 30.0%
TGAGAAAGATGAAAATGTTG+AGG - chr2_1:36899400-36899419 Msa0206840:CDS 30.0%
! TTCTTGTTTCACAGTAACTT+TGG + chr2_1:36899609-36899628 None:intergenic 30.0%
GAATGAATCAGAGAAAAAAG+TGG - chr2_1:36899676-36899695 Msa0206840:intron 30.0%
!! TGAATTCCTTTTGATTGTAG+GGG + chr2_1:36899834-36899853 None:intergenic 30.0%
! AATTGGGTTTGGAGAAATTT+TGG + chr2_1:36899865-36899884 None:intergenic 30.0%
TTTCTTACTTGAATTGGGTT+TGG + chr2_1:36899876-36899895 None:intergenic 30.0%
CATTATTAAATCCACTGTTG+AGG + chr2_1:36900135-36900154 None:intergenic 30.0%
! CAACAGTGGATTTAATAATG+TGG - chr2_1:36900135-36900154 Msa0206840:intron 30.0%
ATGCAAAGGATATCAATTTG+AGG - chr2_1:36900222-36900241 Msa0206840:intron 30.0%
AACTGGTCAACATAAATTGT+TGG - chr2_1:36900293-36900312 Msa0206840:intron 30.0%
GGTCAACAAAACAATGTATT+TGG + chr2_1:36900339-36900358 None:intergenic 30.0%
!!! TTGCTTATATTTTGGGACTA+AGG - chr2_1:36900364-36900383 Msa0206840:intron 30.0%
AATAAGACTGCAAAAAGCAA+GGG + chr2_1:36900451-36900470 None:intergenic 30.0%
AAATAAGACTGCAAAAAGCA+AGG + chr2_1:36900452-36900471 None:intergenic 30.0%
!! TCTATAGATCCTTAATTTGC+AGG - chr2_1:36900517-36900536 Msa0206840:intron 30.0%
! TCAACACGTAAGATTTTCAA+TGG - chr2_1:36900629-36900648 Msa0206840:intron 30.0%
ACATTAATTACGTCATGAAG+GGG + chr2_1:36900706-36900725 None:intergenic 30.0%
CACATTAATTACGTCATGAA+GGG + chr2_1:36900707-36900726 None:intergenic 30.0%
ACACATTAATTACGTCATGA+AGG + chr2_1:36900708-36900727 None:intergenic 30.0%
AACTTACTACGTACAAATAC+AGG + chr2_1:36900760-36900779 None:intergenic 30.0%
TAAGAGAACAAGATGCAATT+TGG - chr2_1:36900915-36900934 Msa0206840:intron 30.0%
GTGGAAGTTTCATAACTATT+TGG - chr2_1:36901128-36901147 Msa0206840:intron 30.0%
ATTTGGAAGATGGCTAAAAT+CGG - chr2_1:36901145-36901164 Msa0206840:CDS 30.0%
TTAAAGGCCTAACAAAATGA+TGG - chr2_1:36901175-36901194 Msa0206840:CDS 30.0%
TAAAGGCCTAACAAAATGAT+GGG - chr2_1:36901176-36901195 Msa0206840:CDS 30.0%
!!! ACTAACTCTAGTACTTTTTC+AGG - chr2_1:36901258-36901277 Msa0206840:intron 30.0%
! GGTAAATTTCCTGATTTTGA+TGG - chr2_1:36901345-36901364 Msa0206840:CDS 30.0%
!! TTTCCTGATTTTGATGGTAT+AGG - chr2_1:36901351-36901370 Msa0206840:CDS 30.0%
TAAATATAAGCATGCACGAT+CGG + chr2_1:36901430-36901449 None:intergenic 30.0%
! TGTTTATTTCATGCGAGTTT+TGG - chr2_1:36901764-36901783 Msa0206840:intron 30.0%
TCCAATACGACAAAGATATA+AGG - chr2_1:36901793-36901812 Msa0206840:intron 30.0%
TCCTTATATCTTTGTCGTAT+TGG + chr2_1:36901797-36901816 None:intergenic 30.0%
ATACGACAAAGATATAAGGA+AGG - chr2_1:36901797-36901816 Msa0206840:intron 30.0%
AGTAATAATGTAGATCTGAC+GGG - chr2_1:36901893-36901912 Msa0206840:intron 30.0%
!!! TTTGGTTTTCTTTTAGCCAA+TGG - chr2_1:36902450-36902469 Msa0206840:intron 30.0%
!! AACACAGTATTGTTGACTTT+GGG + chr2_1:36902648-36902667 None:intergenic 30.0%
!! AAACACAGTATTGTTGACTT+TGG + chr2_1:36902649-36902668 None:intergenic 30.0%
ACGAAAAGTAAAGACAAAAG+AGG + chr2_1:36902691-36902710 None:intergenic 30.0%
! TTTTCATCATACTAGTGTAG+TGG + chr2_1:36902722-36902741 None:intergenic 30.0%
ACACTAGTTAAACTAATGTG+TGG - chr2_1:36903185-36903204 Msa0206840:CDS 30.0%
AGTCAAGAAAGGATTCTAAA+AGG - chr2_1:36903374-36903393 Msa0206840:CDS 30.0%
GAGTAATTCAAAAGCAAATG+TGG + chr2_1:36903433-36903452 None:intergenic 30.0%
ATTAGGGTTCAATAGCAAAA+GGG - chr2_1:36903558-36903577 Msa0206840:CDS 30.0%
GCCATATCATAAGTGGTTAA+TGG + chr2_1:36898833-36898852 None:intergenic 35.0%
AATGGATAAAAGAAGAGGTG+TGG - chr2_1:36898914-36898933 Msa0206840:three_prime_UTR 35.0%
AAGAGTGATCAAGTTAAAGG+TGG - chr2_1:36898969-36898988 Msa0206840:three_prime_UTR 35.0%
AGATTGAGAAGAACCTCAAT+TGG - chr2_1:36899056-36899075 Msa0206840:three_prime_UTR 35.0%
GATTGAGAAGAACCTCAATT+GGG - chr2_1:36899057-36899076 Msa0206840:three_prime_UTR 35.0%
GATTTCCAAAGGAAAAACAG+AGG - chr2_1:36899112-36899131 Msa0206840:exon 35.0%
ATGAAATGGAAGACTCTTCT+TGG + chr2_1:36899159-36899178 None:intergenic 35.0%
GATAAGATCTGATATGCAGA+AGG - chr2_1:36899205-36899224 Msa0206840:CDS 35.0%
GATATCAAGCAATGTTGATG+TGG - chr2_1:36899448-36899467 Msa0206840:CDS 35.0%
TCAAAATTCACCTGAATCAG+TGG - chr2_1:36899472-36899491 Msa0206840:CDS 35.0%
TGAGGAAATTGAGATTGAGA+TGG - chr2_1:36899541-36899560 Msa0206840:intron 35.0%
TTCACAGTAACTTTGGATTC+TGG + chr2_1:36899602-36899621 None:intergenic 35.0%
! TATGGTTGATGTGAATGAAC+CGG - chr2_1:36899637-36899656 Msa0206840:intron 35.0%
TTTCTTCTGTTCTGCTTCAT+TGG + chr2_1:36899705-36899724 None:intergenic 35.0%
AACAATCCCCTACAATCAAA+AGG - chr2_1:36899825-36899844 Msa0206840:intron 35.0%
!! TAGACTCTGCAACTTGTTTT+GGG + chr2_1:36900032-36900051 None:intergenic 35.0%
TTATGATTTCTCCTCAACAG+TGG - chr2_1:36900121-36900140 Msa0206840:intron 35.0%
TCAAGATCAGCATTTGTGTT+TGG - chr2_1:36900167-36900186 Msa0206840:intron 35.0%
CAAGATCAGCATTTGTGTTT+GGG - chr2_1:36900168-36900187 Msa0206840:intron 35.0%
AGTCTCATCTTCTTATGCAA+AGG - chr2_1:36900208-36900227 Msa0206840:intron 35.0%
!!! TGCTTACATTTTGGAATCGA+GGG + chr2_1:36900271-36900290 None:intergenic 35.0%
TCCAAAATGTAAGCACAAAC+TGG - chr2_1:36900276-36900295 Msa0206840:intron 35.0%
! ACCAGTTTGTGCTTACATTT+TGG + chr2_1:36900280-36900299 None:intergenic 35.0%
!!! CTTATATTTTGGGACTAAGG+AGG - chr2_1:36900367-36900386 Msa0206840:intron 35.0%
ATTTCTGCAATGTCCTATGT+AGG - chr2_1:36900468-36900487 Msa0206840:intron 35.0%
AGATAACTGCAAGATAGACA+AGG + chr2_1:36900494-36900513 None:intergenic 35.0%
CTTACGTGTTGAAATTAGAG+TGG + chr2_1:36900621-36900640 None:intergenic 35.0%
AAGGGGTGGTTATATTTGAA+CGG + chr2_1:36900689-36900708 None:intergenic 35.0%
! CGTACAAATACAGGCATTTT+AGG + chr2_1:36900751-36900770 None:intergenic 35.0%
TGCAATTTGGATGCTGAAAT+TGG - chr2_1:36900928-36900947 Msa0206840:intron 35.0%
!!! AAACTGAAAGCACTTTTCTC+TGG - chr2_1:36900980-36900999 Msa0206840:intron 35.0%
GCAATTCGTACACATTTAGA+GGG + chr2_1:36901075-36901094 None:intergenic 35.0%
TGCAATTCGTACACATTTAG+AGG + chr2_1:36901076-36901095 None:intergenic 35.0%
AAATGTGTACGAATTGCAGT+TGG - chr2_1:36901078-36901097 Msa0206840:intron 35.0%
!!! GGCAGTTTTGCTATTTGTTT+TGG - chr2_1:36901099-36901118 Msa0206840:intron 35.0%
!!! CTATTTGTTTTGGCAAGATG+TGG - chr2_1:36901109-36901128 Msa0206840:intron 35.0%
! GAAAGACCCATCATTTTGTT+AGG + chr2_1:36901185-36901204 None:intergenic 35.0%
TGATTACACTGACAGACAAA+TGG - chr2_1:36901226-36901245 Msa0206840:intron 35.0%
!!! AGTACTTTTTCAGGCTTCTT+TGG - chr2_1:36901267-36901286 Msa0206840:intron 35.0%
TCAGCACAATTAACTGCATA+TGG - chr2_1:36901324-36901343 Msa0206840:intron 35.0%
CAACCTATACCATCAAAATC+AGG + chr2_1:36901357-36901376 None:intergenic 35.0%
ACCTTACAAGTGATAAGAGA+GGG + chr2_1:36901707-36901726 None:intergenic 35.0%
TACCTTACAAGTGATAAGAG+AGG + chr2_1:36901708-36901727 None:intergenic 35.0%
TGGAGTCAACATAGAATAGA+AGG + chr2_1:36901867-36901886 None:intergenic 35.0%
!! AGCTAGTTTGATTTTGTCGT+TGG + chr2_1:36902357-36902376 None:intergenic 35.0%
!! ATCACATGGATTAGCATCTT+TGG - chr2_1:36902432-36902451 Msa0206840:intron 35.0%
AAAAAACATGATTGCGCCAT+TGG + chr2_1:36902469-36902488 None:intergenic 35.0%
TTTGATCCCATTACTTGCAT+TGG - chr2_1:36902511-36902530 Msa0206840:intron 35.0%
TTGATCCCATTACTTGCATT+GGG - chr2_1:36902512-36902531 Msa0206840:intron 35.0%
AAACTAGGGAACACAATTGT+TGG - chr2_1:36902573-36902592 Msa0206840:intron 35.0%
!! GTATTGTTGACTTTGGGATT+GGG + chr2_1:36902642-36902661 None:intergenic 35.0%
!! AGTATTGTTGACTTTGGGAT+TGG + chr2_1:36902643-36902662 None:intergenic 35.0%
AAATATCCAGAGAGAGTCAT+TGG - chr2_1:36902782-36902801 Msa0206840:CDS 35.0%
!!! ATTTTTGGATTCGTCGATTC+CGG - chr2_1:36903010-36903029 Msa0206840:CDS 35.0%
CTAGTTAAACTAATGTGTGG+TGG - chr2_1:36903188-36903207 Msa0206840:CDS 35.0%
ATCAACAACACTATATGGTG+AGG - chr2_1:36903259-36903278 Msa0206840:CDS 35.0%
TCAACAACACTATATGGTGA+GGG - chr2_1:36903260-36903279 Msa0206840:CDS 35.0%
!! TTGTGTTGTTTCTGTCTAAC+TGG + chr2_1:36903336-36903355 None:intergenic 35.0%
GAATCCTTTCTTGACTTTGT+TGG + chr2_1:36903370-36903389 None:intergenic 35.0%
! AAGGATTCTAAAAGGATGCA+TGG - chr2_1:36903382-36903401 Msa0206840:CDS 35.0%
TATGCATAGCTATAGTTCTC+AGG - chr2_1:36903503-36903522 Msa0206840:CDS 35.0%
!!! CTTTTGCTATTGAACCCTAA+TGG + chr2_1:36903559-36903578 None:intergenic 35.0%
CATTAGGGTTCAATAGCAAA+AGG - chr2_1:36903557-36903576 Msa0206840:CDS 35.0%
AGCAAAAGGGAATAATAGCT+TGG - chr2_1:36903571-36903590 Msa0206840:CDS 35.0%
CAAATGGGCCATATCATAAG+TGG + chr2_1:36898840-36898859 None:intergenic 40.0%
GATATGGCCCATTTGTCTTT+AGG - chr2_1:36898845-36898864 Msa0206840:three_prime_UTR 40.0%
GAAGAACAAGAACAAGAAGG+AGG - chr2_1:36899017-36899036 Msa0206840:three_prime_UTR 40.0%
GAACAAGAAGGAGGAAATGT+TGG - chr2_1:36899026-36899045 Msa0206840:three_prime_UTR 40.0%
! TCTCTTTGAAGACCCAATTG+AGG + chr2_1:36899072-36899091 None:intergenic 40.0%
AGCCCAATTCAGATTTCCAA+AGG - chr2_1:36899101-36899120 Msa0206840:exon 40.0%
!! TGGTTCCTCTGTTTTTCCTT+TGG + chr2_1:36899120-36899139 None:intergenic 40.0%
TTGGTTCCATCAGAAATGCA+TGG + chr2_1:36899140-36899159 None:intergenic 40.0%
ATCGGGCTTCTTGTATGAAA+TGG + chr2_1:36899173-36899192 None:intergenic 40.0%
TTCTTGAACTCGATCCAACT+CGG + chr2_1:36899324-36899343 None:intergenic 40.0%
! TGAATCAGATGGTGATGTTG+TGG - chr2_1:36899514-36899533 Msa0206840:intron 40.0%
! GAATGAGAGCTTTGATGTGA+AGG - chr2_1:36899565-36899584 Msa0206840:intron 40.0%
TGAAGCAGAACAGAAGAAAG+TGG - chr2_1:36899706-36899725 Msa0206840:intron 40.0%
TTTCTTCGGTTCTGCTTCAT+TGG + chr2_1:36899735-36899754 None:intergenic 40.0%
TTGGCATTCACCACTTTCTT+CGG + chr2_1:36899749-36899768 None:intergenic 40.0%
ACTACAAGAGGAACAGAAAC+TGG + chr2_1:36899803-36899822 None:intergenic 40.0%
! CTACTGCGTTCTTCTTCTTT+TGG + chr2_1:36899998-36900017 None:intergenic 40.0%
!!! TGCAACTTGTTTTGGGTTTG+TGG + chr2_1:36900025-36900044 None:intergenic 40.0%
!! CTAGACTCTGCAACTTGTTT+TGG + chr2_1:36900033-36900052 None:intergenic 40.0%
CAAAACAAGTTGCAGAGTCT+AGG - chr2_1:36900031-36900050 Msa0206840:intron 40.0%
! TCAGCATTTGTGTTTGGGAT+TGG - chr2_1:36900173-36900192 Msa0206840:intron 40.0%
!!! GTGCTTACATTTTGGAATCG+AGG + chr2_1:36900272-36900291 None:intergenic 40.0%
AAGATAGACAAGGCCTACAT+AGG + chr2_1:36900484-36900503 None:intergenic 40.0%
TTAATTACGTCATGAAGGGG+TGG + chr2_1:36900703-36900722 None:intergenic 40.0%
GAATACGAAGAGCAGATCTT+TGG + chr2_1:36901306-36901325 None:intergenic 40.0%
GTAGAATAGATTAGACGGTG+CGG - chr2_1:36901382-36901401 Msa0206840:CDS 40.0%
GGATTATGATACCCTTCTGT+CGG - chr2_1:36901471-36901490 Msa0206840:intron 40.0%
TTTAGTGTATGCCGACAGAA+GGG + chr2_1:36901485-36901504 None:intergenic 40.0%
ATTTAGTGTATGCCGACAGA+AGG + chr2_1:36901486-36901505 None:intergenic 40.0%
AGAGACCCAATGCAAGTAAT+GGG + chr2_1:36902520-36902539 None:intergenic 40.0%
AAGAGACCCAATGCAAGTAA+TGG + chr2_1:36902521-36902540 None:intergenic 40.0%
ATCATACTAGTGTAGTGGCT+GGG + chr2_1:36902717-36902736 None:intergenic 40.0%
!!! TTTTTGGATTCGTCGATTCC+GGG - chr2_1:36903011-36903030 Msa0206840:CDS 40.0%
ATGCACTCACAAAAAAGCTG+TGG - chr2_1:36903047-36903066 Msa0206840:CDS 40.0%
TAGGCATATTCGGTCTAGTA+TGG - chr2_1:36903073-36903092 Msa0206840:CDS 40.0%
ATCTGTTGTTGCTCGCATTT+GGG - chr2_1:36903104-36903123 Msa0206840:CDS 40.0%
ACTATATGGTGAGGGATGAA+TGG - chr2_1:36903268-36903287 Msa0206840:CDS 40.0%
CTATATGGTGAGGGATGAAT+GGG - chr2_1:36903269-36903288 Msa0206840:CDS 40.0%
AAACAGGATGTGATGAAGCA+TGG - chr2_1:36903301-36903320 Msa0206840:CDS 40.0%
AACAGGATGTGATGAAGCAT+GGG - chr2_1:36903302-36903321 Msa0206840:CDS 40.0%
GCTACCAACAAAGTCAAGAA+AGG - chr2_1:36903363-36903382 Msa0206840:CDS 40.0%
! GATTCTAAAAGGATGCATGG+TGG - chr2_1:36903385-36903404 Msa0206840:CDS 40.0%
TGGTTACTATAGCTAGCTAG+TGG - chr2_1:36903405-36903424 Msa0206840:CDS 40.0%
! TAGAAGCAATGGAGGTTGGT+GGG + chr2_1:36898795-36898814 None:intergenic 45.0%
GAAGTAGAAGCAATGGAGGT+TGG + chr2_1:36898799-36898818 None:intergenic 45.0%
GCTTGAAGTAGAAGCAATGG+AGG + chr2_1:36898803-36898822 None:intergenic 45.0%
GAGGCTTGAAGTAGAAGCAA+TGG + chr2_1:36898806-36898825 None:intergenic 45.0%
CAAGAAGGAGGAAATGTTGG+TGG - chr2_1:36899029-36899048 Msa0206840:three_prime_UTR 45.0%
GAGGAACCATGCATTTCTGA+TGG - chr2_1:36899131-36899150 Msa0206840:CDS 45.0%
AGATCTGATATGCAGAAGGG+TGG - chr2_1:36899209-36899228 Msa0206840:CDS 45.0%
!! CCAACATGAACCACTGATTC+AGG + chr2_1:36899485-36899504 None:intergenic 45.0%
CCTGAATCAGTGGTTCATGT+TGG - chr2_1:36899482-36899501 Msa0206840:CDS 45.0%
GAATCAGTGGTTCATGTTGG+TGG - chr2_1:36899485-36899504 Msa0206840:intron 45.0%
GGTGGTGATTCTGAATCAGA+TGG - chr2_1:36899503-36899522 Msa0206840:intron 45.0%
! TGGTGATGTTGTGGATGATG+AGG - chr2_1:36899523-36899542 Msa0206840:intron 45.0%
TGAAGCAGAACCGAAGAAAG+TGG - chr2_1:36899736-36899755 Msa0206840:intron 45.0%
GGGGATTGTTTCACTACAAG+AGG + chr2_1:36899815-36899834 None:intergenic 45.0%
GGGTGGTTATATTTGAACGG+TGG + chr2_1:36900686-36900705 None:intergenic 45.0%
ATTACCTTCATTGTGGTGCC+AGG + chr2_1:36901010-36901029 None:intergenic 45.0%
GCCCTCTCTTATCACTTGTA+AGG - chr2_1:36901703-36901722 Msa0206840:intron 45.0%
CATCATACTAGTGTAGTGGC+TGG + chr2_1:36902718-36902737 None:intergenic 45.0%
GCAAAACCAATGACTCTCTC+TGG + chr2_1:36902791-36902810 None:intergenic 45.0%
CACAAAAAAGCTGTGGCTCT+AGG - chr2_1:36903054-36903073 Msa0206840:CDS 45.0%
CATCTGTTGTTGCTCGCATT+TGG - chr2_1:36903103-36903122 Msa0206840:CDS 45.0%
GAATGGGTGGAAGATGAAAC+AGG - chr2_1:36903285-36903304 Msa0206840:CDS 45.0%
!!! AGTTTTTTTTTTTTTTTTTA+TGG - chr2_1:36900851-36900870 Msa0206840:intron 5.0%
!!! GTTTTTTTTTTTTTTTTTAT+GGG - chr2_1:36900852-36900871 Msa0206840:intron 5.0%
!! AGAAGCAATGGAGGTTGGTG+GGG + chr2_1:36898794-36898813 None:intergenic 50.0%
GTAGAAGCAATGGAGGTTGG+TGG + chr2_1:36898796-36898815 None:intergenic 50.0%
TCTGATATGCAGAAGGGTGG+TGG - chr2_1:36899212-36899231 Msa0206840:CDS 50.0%
GTGAAGCTGCAGGGAAATTG+AGG - chr2_1:36899234-36899253 Msa0206840:CDS 50.0%
GAGGAAGACGAAATCCGAGT+TGG - chr2_1:36899307-36899326 Msa0206840:intron 50.0%
!! GCACTTTTCTCTGGAGATCC+TGG - chr2_1:36900989-36901008 Msa0206840:intron 50.0%
AGATCCTGGCACCACAATGA+AGG - chr2_1:36901003-36901022 Msa0206840:intron 50.0%
CATGCACGATCGGCTAATGT+GGG + chr2_1:36901420-36901439 None:intergenic 50.0%
TGTCGTTGGATGAGACGATG+AGG + chr2_1:36902343-36902362 None:intergenic 50.0%
AATGGTCCTCCACATCCTTG+TGG - chr2_1:36902615-36902634 Msa0206840:intron 50.0%
!! ACTTTGGGATTGGGACCACA+AGG + chr2_1:36902633-36902652 None:intergenic 50.0%
TGCATGAATCCCATGCATCC+CGG + chr2_1:36903032-36903051 None:intergenic 50.0%
!! GCTGTGGCTCTAGGCATATT+CGG - chr2_1:36903063-36903082 Msa0206840:CDS 50.0%
TATGGTGAGGGATGAATGGG+TGG - chr2_1:36903272-36903291 Msa0206840:CDS 50.0%
! AGAAGAGGTGTGGTTGCTGC+AGG - chr2_1:36898924-36898943 Msa0206840:three_prime_UTR 55.0%
! GAAGAGGTGTGGTTGCTGCA+GGG - chr2_1:36898925-36898944 Msa0206840:three_prime_UTR 55.0%
TAGACGGTGCGGTGCTTTCA+TGG - chr2_1:36901393-36901412 Msa0206840:CDS 55.0%
AGACGGTGCGGTGCTTTCAT+GGG - chr2_1:36901394-36901413 Msa0206840:CDS 55.0%
GCATGCACGATCGGCTAATG+TGG + chr2_1:36901421-36901440 None:intergenic 55.0%
TTGGGACCACAAGGATGTGG+AGG + chr2_1:36902624-36902643 None:intergenic 55.0%
GGATTGGGACCACAAGGATG+TGG + chr2_1:36902627-36902646 None:intergenic 55.0%
!! TTCGTCGATTCCGGGATGCA+TGG - chr2_1:36903019-36903038 Msa0206840:CDS 55.0%
!! TCGTCGATTCCGGGATGCAT+GGG - chr2_1:36903020-36903039 Msa0206840:CDS 55.0%
GTTGTTGCTCGCATTTGGGC+AGG - chr2_1:36903108-36903127 Msa0206840:CDS 55.0%
TGGTTGCTGCAGGGTCAGTG+TGG - chr2_1:36898934-36898953 Msa0206840:three_prime_UTR 60.0%
GGTTGCTGCAGGGTCAGTGT+GGG - chr2_1:36898935-36898954 Msa0206840:three_prime_UTR 60.0%
! AAGGGTGGTGGTGAAGCTGC+AGG - chr2_1:36899224-36899243 Msa0206840:CDS 60.0%
! AGGGTGGTGGTGAAGCTGCA+GGG - chr2_1:36899225-36899244 Msa0206840:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 36898781 36903729 36898781 ID=Msa0206840;Name=Msa0206840
chr2_1 mRNA 36898781 36903729 36898781 ID=Msa0206840-mRNA-1;Parent=Msa0206840;Name=Msa0206840-mRNA-1;_AED=0.23;_eAED=0.23;_QI=134|0.75|0.77|1|0.87|0.77|9|305|558
chr2_1 exon 36898781 36898799 36898781 ID=Msa0206840-mRNA-1:exon:11994;Parent=Msa0206840-mRNA-1
chr2_1 exon 36898832 36899281 36898832 ID=Msa0206840-mRNA-1:exon:11993;Parent=Msa0206840-mRNA-1
chr2_1 exon 36899381 36899503 36899381 ID=Msa0206840-mRNA-1:exon:11992;Parent=Msa0206840-mRNA-1
chr2_1 exon 36901144 36901230 36901144 ID=Msa0206840-mRNA-1:exon:11991;Parent=Msa0206840-mRNA-1
chr2_1 exon 36901344 36901413 36901344 ID=Msa0206840-mRNA-1:exon:11990;Parent=Msa0206840-mRNA-1
chr2_1 exon 36901486 36901630 36901486 ID=Msa0206840-mRNA-1:exon:11989;Parent=Msa0206840-mRNA-1
chr2_1 exon 36901972 36902020 36901972 ID=Msa0206840-mRNA-1:exon:11988;Parent=Msa0206840-mRNA-1
chr2_1 exon 36902458 36902523 36902458 ID=Msa0206840-mRNA-1:exon:11987;Parent=Msa0206840-mRNA-1
chr2_1 exon 36902623 36903729 36902623 ID=Msa0206840-mRNA-1:exon:11986;Parent=Msa0206840-mRNA-1
chr2_1 five_prime_UTR 36903596 36903729 36903596 ID=Msa0206840-mRNA-1:five_prime_utr;Parent=Msa0206840-mRNA-1
chr2_1 CDS 36902623 36903595 36902623 ID=Msa0206840-mRNA-1:cds;Parent=Msa0206840-mRNA-1
chr2_1 CDS 36902458 36902523 36902458 ID=Msa0206840-mRNA-1:cds;Parent=Msa0206840-mRNA-1
chr2_1 CDS 36901972 36902020 36901972 ID=Msa0206840-mRNA-1:cds;Parent=Msa0206840-mRNA-1
chr2_1 CDS 36901486 36901630 36901486 ID=Msa0206840-mRNA-1:cds;Parent=Msa0206840-mRNA-1
chr2_1 CDS 36901344 36901413 36901344 ID=Msa0206840-mRNA-1:cds;Parent=Msa0206840-mRNA-1
chr2_1 CDS 36901144 36901230 36901144 ID=Msa0206840-mRNA-1:cds;Parent=Msa0206840-mRNA-1
chr2_1 CDS 36899381 36899503 36899381 ID=Msa0206840-mRNA-1:cds;Parent=Msa0206840-mRNA-1
chr2_1 CDS 36899118 36899281 36899118 ID=Msa0206840-mRNA-1:cds;Parent=Msa0206840-mRNA-1
chr2_1 three_prime_UTR 36898832 36899117 36898832 ID=Msa0206840-mRNA-1:three_prime_utr;Parent=Msa0206840-mRNA-1
chr2_1 three_prime_UTR 36898781 36898799 36898781 ID=Msa0206840-mRNA-1:three_prime_utr;Parent=Msa0206840-mRNA-1
Gene Sequence

>Msa0206840

ATGGATAAAAGAAGAGGTGTGGTTGCTGCAGGGTCAGTGTGGGAGAGTAGAATGAAGAGTGATCAAGTTAAAGGTGGAATCAAAGTGTTCAAAGCAGAAAAAGAAGAACAAGAACAAGAAGGAGGAAATGTTGGTGGTTCTAGATTGAGAAGAACCTCAATTGGGTCTTCAAAGAGAAAAATTTGTAGCCCAATTCAGATTTCCAAAGGAAAAACAGAGGAACCATGCATTTCTGATGGAACCAAGAAGAGTCTTCCATTTCATACAAGAAGCCCGATTCAATCAAGAAAGATAAGATCTGATATGCAGAAGGGTGGTGGTGAAGCTGCAGGGAAATTGAGGAAGATTAAATCAGATCCAATCAATAAGAATGTTAATGATTCAATTGAATTGAGGAAGACGAAATCCGAGTTGGATCGAGTTCAAGAAAATGAGACAAAGAATGAATTTGATGAATTGGATGATGGGTTTGAAAAGATTGAAGCTGAGAAAGATGAAAATGTTGAGGATTTTGATGTGTGTCAAGAGAAAGAGATATCAAGCAATGTTGATGTGGTTCAAAATTCACCTGAATCAGTGGTTCATGTTGGTGGTGATTCTGAATCAGATGGTGATGTTGTGGATGATGAGGAAATTGAGATTGAGATGGAGAATGAGAGCTTTGATGTGAAGGAAATTAGTATTCCAGAATCCAAAGTTACTGTGAAACAAGAAGAAAATGATATGGTTGATGTGAATGAACCGGAAAAGAAGATTGTTTTGAATGAATCAGAGAAAAAAGTGGTAACCAATGAAGCAGAACAGAAGAAAGTGGTAACCAATGAAGCAGAACCGAAGAAAGTGGTGAATGCCAATATGAGATTTCATCACAAAAATGAAAGAAGACCAGTTTCTGTTCCTCTTGTAGTGAAACAATCCCCTACAATCAAAAGGAATTCAAAAATTTACCAAAATTTCTCCAAACCCAATTCAAGTTCAGTTCCAAAAGAAGAAGAACGCAGTAGCTTTCCACAAACCCAAAACAAGTTGCAGAGTCTAGGCCTTGTCTATCTTGCAGTTATCTTCATCTATAGATCCTTAATTTGCAGGGGAGTGATAGATGTAGAAGACTCAAATTATGTAGTAAGAGAACAAGATGCAATTTGGATGCTGAAATTGGTCCTACCTTATTTGAATGAATTCTTGTCAAAACTGAAAGCACTTTTCTCTGGAGATCCTGGCACCACAATGAAGTTGGCAGTTTTGCTATTTGTTTTGGCAAGATGTGGAAGTTTCATAACTATTTGGAAGATGGCTAAAATCGGCTTCTTTGGAGTTTTCATTGTACCAAAGATCTGCTCTTCGTATTCAGCACAATTAACTGCATATGGTAAATTTCCTGATTTTGATGCAAATTTTTGGATTCGTCGATTCCGGGATGCATGGGATTCATGCACTCACAAAAAAGCTGTGGCTCTAGGCATATTCGGTCTAGTATGGAATTTGTCATCTGTTGTTGCTCGCATTTGGGCAGTGTTTGTACTATTTGTAGCATTCAGATACTATCAACAACACTATATGGTGAGGGATGAATGGGTGGAAGATGAAACAGGATGTGATGAAGCATGGGAAGAAGAACCAGTTAGACAGAAACAACACAACTTCGTTGCTACCAACAAAGTCAAGAAAGGATTCTAA

Protein sequence

>Msa0206840

MDKRRGVVAAGSVWESRMKSDQVKGGIKVFKAEKEEQEQEGGNVGGSRLRRTSIGSSKRKICSPIQISKGKTEEPCISDGTKKSLPFHTRSPIQSRKIRSDMQKGGGEAAGKLRKIKSDPINKNVNDSIELRKTKSELDRVQENETKNEFDELDDGFEKIEAEKDENVEDFDVCQEKEISSNVDVVQNSPESVVHVGGDSESDGDVVDDEEIEIEMENESFDVKEISIPESKVTVKQEENDMVDVNEPEKKIVLNESEKKVVTNEAEQKKVVTNEAEPKKVVNANMRFHHKNERRPVSVPLVVKQSPTIKRNSKIYQNFSKPNSSSVPKEEERSSFPQTQNKLQSLGLVYLAVIFIYRSLICRGVIDVEDSNYVVREQDAIWMLKLVLPYLNEFLSKLKALFSGDPGTTMKLAVLLFVLARCGSFITIWKMAKIGFFGVFIVPKICSSYSAQLTAYGKFPDFDANFWIRRFRDAWDSCTHKKAVALGIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHYMVRDEWVEDETGCDEAWEEEPVRQKQHNFVATNKVKKGF*