Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680090 | XP_003592350.1 | 77.329 | 322 | 66 | 3 | 194 | 510 | 21 | 340 | 4.68e-166 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680090 | sp|Q9FLH8|SCRK7_ARATH | 68.896 | 299 | 90 | 2 | 197 | 494 | 24 | 320 | 5.06e-143 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680090 | G7IC32 | 77.329 | 322 | 66 | 3 | 194 | 510 | 21 | 340 | 2.23e-166 | 483 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0680090 | Msa0680100 | 0.891423 | 4.027602e-74 | -8.615850e-47 |
| Msa0680090 | Msa0701010 | 0.807863 | 4.105431e-50 | -8.615850e-47 |
| Msa0680090 | Msa0877250 | 0.825051 | 5.788445e-54 | -8.615850e-47 |
| Msa0680090 | Msa0892340 | 0.803075 | 4.145257e-49 | -8.615850e-47 |
| Msa0680090 | Msa0966750 | 0.809979 | 1.447587e-50 | -8.615850e-47 |
| Msa0680090 | Msa1069220 | 0.813807 | 2.123058e-51 | -8.615850e-47 |
| Msa0424320 | Msa0680090 | 0.812943 | 3.287804e-51 | -8.615850e-47 |
| Msa0523940 | Msa0680090 | 0.814097 | 1.832827e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680090 | MtrunA17_Chr1g0204101 | 77.329 | 322 | 66 | 3 | 194 | 510 | 21 | 340 | 4.30e-170 | 483 |
| Msa0680090 | MtrunA17_Chr6g0474331 | 72.100 | 319 | 82 | 3 | 194 | 507 | 26 | 342 | 1.07e-158 | 455 |
| Msa0680090 | MtrunA17_Chr1g0177771 | 48.596 | 570 | 206 | 11 | 3 | 506 | 4 | 552 | 4.78e-150 | 441 |
| Msa0680090 | MtrunA17_Chr1g0183241 | 55.294 | 425 | 117 | 9 | 136 | 510 | 5 | 406 | 3.97e-133 | 392 |
| Msa0680090 | MtrunA17_Chr5g0434971 | 62.069 | 348 | 117 | 6 | 173 | 515 | 49 | 386 | 1.52e-132 | 390 |
| Msa0680090 | MtrunA17_Chr1g0171921 | 49.709 | 515 | 205 | 13 | 5 | 506 | 22 | 495 | 6.60e-129 | 385 |
| Msa0680090 | MtrunA17_Chr4g0033631 | 58.385 | 322 | 119 | 6 | 194 | 507 | 13 | 327 | 6.56e-119 | 353 |
| Msa0680090 | MtrunA17_Chr1g0188291 | 56.646 | 316 | 128 | 5 | 197 | 507 | 9 | 320 | 1.14e-118 | 352 |
| Msa0680090 | MtrunA17_Chr1g0183661 | 64.189 | 296 | 87 | 5 | 211 | 501 | 3 | 284 | 2.71e-117 | 348 |
| Msa0680090 | MtrunA17_Chr2g0329451 | 56.698 | 321 | 126 | 6 | 194 | 507 | 12 | 326 | 5.90e-117 | 348 |
| Msa0680090 | MtrunA17_Chr1g0177321 | 47.454 | 491 | 141 | 10 | 103 | 506 | 9 | 469 | 1.63e-113 | 344 |
| Msa0680090 | MtrunA17_Chr1g0176221 | 55.144 | 243 | 72 | 3 | 272 | 510 | 1 | 210 | 1.97e-72 | 229 |
| Msa0680090 | MtrunA17_Chr7g0246421 | 54.359 | 195 | 85 | 1 | 321 | 511 | 2 | 196 | 1.65e-67 | 216 |
| Msa0680090 | MtrunA17_Chr4g0020911 | 68.531 | 143 | 45 | 0 | 311 | 453 | 46 | 188 | 1.22e-55 | 185 |
| Msa0680090 | MtrunA17_Chr4g0008441 | 29.885 | 348 | 192 | 7 | 197 | 496 | 94 | 437 | 1.56e-37 | 144 |
| Msa0680090 | MtrunA17_Chr5g0419371 | 30.137 | 292 | 176 | 7 | 222 | 491 | 250 | 535 | 3.18e-37 | 144 |
| Msa0680090 | MtrunA17_Chr7g0246411 | 55.970 | 134 | 53 | 4 | 195 | 324 | 39 | 170 | 6.59e-35 | 129 |
| Msa0680090 | MtrunA17_Chr8g0386161 | 42.262 | 168 | 77 | 8 | 38 | 190 | 73 | 235 | 2.11e-24 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0680090 | AT5G51830.2 | 68.896 | 299 | 90 | 2 | 197 | 494 | 24 | 320 | 5.14e-144 | 418 |
| Msa0680090 | AT5G51830.1 | 68.896 | 299 | 90 | 2 | 197 | 494 | 24 | 320 | 5.14e-144 | 418 |
| Msa0680090 | AT1G66430.1 | 65.176 | 313 | 101 | 4 | 197 | 504 | 66 | 375 | 5.94e-136 | 399 |
| Msa0680090 | AT4G10260.1 | 60.870 | 299 | 112 | 4 | 197 | 494 | 7 | 301 | 1.37e-117 | 350 |
| Msa0680090 | AT2G31390.1 | 58.086 | 303 | 118 | 5 | 195 | 494 | 8 | 304 | 7.13e-115 | 343 |
| Msa0680090 | AT1G06030.1 | 57.096 | 303 | 121 | 4 | 195 | 494 | 10 | 306 | 7.68e-114 | 340 |
| Msa0680090 | AT3G59480.1 | 57.143 | 301 | 120 | 5 | 197 | 494 | 11 | 305 | 8.31e-113 | 337 |
| Msa0680090 | AT1G06020.1 | 55.446 | 303 | 126 | 4 | 195 | 494 | 9 | 305 | 4.86e-110 | 331 |
| Msa0680090 | AT3G54090.1 | 31.731 | 312 | 172 | 10 | 220 | 496 | 141 | 446 | 2.04e-37 | 144 |
| Msa0680090 | AT1G50390.1 | 45.098 | 153 | 53 | 1 | 342 | 494 | 1 | 122 | 5.23e-36 | 131 |
| Msa0680090 | AT1G69200.1 | 29.900 | 301 | 184 | 6 | 225 | 501 | 249 | 546 | 3.36e-35 | 139 |
| Msa0680090 | AT5G63540.2 | 37.725 | 167 | 93 | 5 | 34 | 190 | 98 | 263 | 2.32e-18 | 89.0 |
| Msa0680090 | AT5G63540.1 | 37.725 | 167 | 93 | 5 | 34 | 190 | 98 | 263 | 2.73e-18 | 88.6 |
Find 132 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGGACAAGTTTCTGTCTT+TGG | 0.185745 | 4_4:+38891816 | Msa0680090:CDS |
| CAACTTGGGGATTCGTTTAA+TGG | 0.207983 | 4_4:+38891763 | Msa0680090:CDS |
| CAGACAGATTTGCGCCATTT+TGG | 0.225214 | 4_4:-38891797 | None:intergenic |
| TCGTGCGCATCCTGGATTAA+AGG | 0.271277 | 4_4:+38892252 | Msa0680090:CDS |
| CAGGCTAAAGTATTCCATTA+TGG | 0.280361 | 4_4:+38893620 | Msa0680090:intron |
| CAATTAGAAGCTTGAGATTA+GGG | 0.296290 | 4_4:-38894019 | None:intergenic |
| TAGGTTGGAGAAGATGAATT+TGG | 0.302890 | 4_4:+38893311 | Msa0680090:intron |
| CGAATTTGAGATTGGAACTA+TGG | 0.306370 | 4_4:+38893735 | Msa0680090:CDS |
| TTGAGGATTGCTAAAGATTC+CGG | 0.333275 | 4_4:+38893692 | Msa0680090:CDS |
| AGTGGACCGGTTGTTTGTTT+TGG | 0.343918 | 4_4:+38892770 | Msa0680090:CDS |
| AACAAAGGCCAATGTGGTTC+TGG | 0.349958 | 4_4:-38893402 | None:intergenic |
| CCTGAAAATACTGAAGTATT+GGG | 0.350349 | 4_4:+38892404 | Msa0680090:CDS |
| AATTCATAATTTCCCATTCA+AGG | 0.356679 | 4_4:+38892062 | Msa0680090:CDS |
| ACAATTAGAAGCTTGAGATT+AGG | 0.362928 | 4_4:-38894020 | None:intergenic |
| CGATGGTCCCTTCATATTGC+AGG | 0.368829 | 4_4:+38891903 | Msa0680090:CDS |
| TGGCTCCGATGTCTCCAAAA+TGG | 0.376989 | 4_4:+38891783 | Msa0680090:CDS |
| AGGTTGGAGAAGATGAATTT+GGG | 0.383868 | 4_4:+38893312 | Msa0680090:intron |
| TCTAATGTACCGGTGACAAC+TGG | 0.395332 | 4_4:+38892365 | Msa0680090:CDS |
| GCAGTTGGCATCTCTAAGTT+GGG | 0.396668 | 4_4:+38892887 | Msa0680090:CDS |
| ACCACAAGGGCGAGTCAAAA+TGG | 0.397069 | 4_4:-38894984 | None:intergenic |
| TCAAACTGAAGGAACCATAA+TGG | 0.400543 | 4_4:-38893634 | None:intergenic |
| TTAAAGGCACCTTCTTTATG+AGG | 0.400588 | 4_4:-38893520 | None:intergenic |
| TCCTGAAAATACTGAAGTAT+TGG | 0.405059 | 4_4:+38892403 | Msa0680090:CDS |
| CAAAATGGCGCAAATCTGTC+TGG | 0.405920 | 4_4:+38891798 | Msa0680090:CDS |
| GGTAGTGCAGGCTCGTCGCC+TGG | 0.408324 | 4_4:-38894716 | None:intergenic |
| CATAGTTCCAATCTCAAATT+CGG | 0.408332 | 4_4:-38893734 | None:intergenic |
| CTGCTGATGCATTTGTTAGT+GGG | 0.409038 | 4_4:+38894412 | Msa0680090:CDS |
| TCAGCAACCTTGTCCTTGAA+TGG | 0.409226 | 4_4:-38892075 | None:intergenic |
| TTAAATAATGTTAATACCTC+TGG | 0.411331 | 4_4:+38893359 | Msa0680090:CDS |
| GAGAGGGTATAATGAGCATA+TGG | 0.412206 | 4_4:+38893777 | Msa0680090:CDS |
| GCTGCTGATGCATTTGTTAG+TGG | 0.416402 | 4_4:+38894411 | Msa0680090:CDS |
| GGCAGTTGGCATCTCTAAGT+TGG | 0.428328 | 4_4:+38892886 | Msa0680090:CDS |
| GCAGCAGCAGTTGTGTCAAC+AGG | 0.430281 | 4_4:-38894393 | None:intergenic |
| GTATGATCCGAATTTGAGAT+TGG | 0.431893 | 4_4:+38893727 | Msa0680090:CDS |
| GAAGGCCTTCGTGCGCATCC+TGG | 0.432843 | 4_4:+38892244 | Msa0680090:CDS |
| CGACAGCTTGCATAATCAAA+AGG | 0.436217 | 4_4:-38894912 | None:intergenic |
| AAGTCCTGTACTGCAACATT+CGG | 0.442377 | 4_4:+38894856 | Msa0680090:three_prime_UTR |
| CAATGTATGTGGCGCAATCC+AGG | 0.446218 | 4_4:+38894698 | Msa0680090:CDS |
| AACATATCAATATGTTGAGT+TGG | 0.450138 | 4_4:+38894884 | Msa0680090:three_prime_UTR |
| TCATCCACATGATCATTAAG+AGG | 0.455152 | 4_4:-38891871 | None:intergenic |
| AGTCCTGTACTGCAACATTC+GGG | 0.456636 | 4_4:+38894857 | Msa0680090:three_prime_UTR |
| GATCTCAATTCTTGTGGTAC+CGG | 0.457346 | 4_4:+38891838 | Msa0680090:CDS |
| TGCAATTTAATGCAAAATAT+AGG | 0.458509 | 4_4:+38894757 | Msa0680090:CDS |
| CAGCAACCTTGTCCTTGAAT+GGG | 0.460138 | 4_4:-38892074 | None:intergenic |
| CACGGAAGGGAAAAGATGAT+AGG | 0.474772 | 4_4:+38891577 | None:intergenic |
| TAGCCCGAATGTTGCAGTAC+AGG | 0.484774 | 4_4:-38894860 | None:intergenic |
| AAGCTTCTAATTGTTACTGA+AGG | 0.488063 | 4_4:+38894029 | Msa0680090:CDS |
| TTTGTTACACTTAGCGCTGA+TGG | 0.489615 | 4_4:+38893419 | Msa0680090:CDS |
| TCTTTGGATCTCAATTCTTG+TGG | 0.497423 | 4_4:+38891832 | Msa0680090:CDS |
| CAGTTGGCATCTCTAAGTTG+GGG | 0.501143 | 4_4:+38892888 | Msa0680090:CDS |
| CTAGTGGTCGAGTCTGTTGA+AGG | 0.502104 | 4_4:+38892226 | Msa0680090:CDS |
| AATACAGCATCATCATCATA+AGG | 0.502358 | 4_4:-38893981 | None:intergenic |
| TCCTAGTGCTGATATGCCTC+CGG | 0.507456 | 4_4:+38893469 | Msa0680090:CDS |
| GACAGCTTGCATAATCAAAA+GGG | 0.507517 | 4_4:-38894911 | None:intergenic |
| ATCATACGAGAGAATGCAAC+CGG | 0.507660 | 4_4:-38893711 | None:intergenic |
| AGCTCTGACTCAGACTCATC+CGG | 0.512840 | 4_4:-38893488 | None:intergenic |
| GGAACCTGCCTGCAATATGA+AGG | 0.513068 | 4_4:-38891911 | None:intergenic |
| TGGCTCATCTTGCTGCCTTG+AGG | 0.514567 | 4_4:+38893675 | Msa0680090:CDS |
| TCTCGAGCAGCCTTGTCTGA+TGG | 0.514889 | 4_4:-38893758 | None:intergenic |
| ATAGATATCCTGCCAACAAT+GGG | 0.516875 | 4_4:+38892803 | Msa0680090:CDS |
| AGAGACACTCCACCCATTGT+TGG | 0.519730 | 4_4:-38892815 | None:intergenic |
| TATCTTGAAAGCAGGCACTT+TGG | 0.521484 | 4_4:-38892840 | None:intergenic |
| TGCTATTTCGAATGGTTCCG+TGG | 0.521876 | 4_4:-38891665 | None:intergenic |
| ACCATTCGAAATAGCAATCT+CGG | 0.523624 | 4_4:+38891672 | Msa0680090:CDS |
| GTTTCACCAAAACAAACAAC+CGG | 0.526190 | 4_4:-38892776 | None:intergenic |
| GCCGAGATTGCTATTTCGAA+TGG | 0.526822 | 4_4:-38891673 | None:intergenic |
| AGATGAATTTGGGCGTATGT+TGG | 0.532518 | 4_4:+38893322 | Msa0680090:CDS |
| ACGGAAGGGAAAAGATGATA+GGG | 0.539888 | 4_4:+38891578 | None:intergenic |
| TGATCTTAACCTCATAAAGA+AGG | 0.540398 | 4_4:+38893511 | Msa0680090:CDS |
| TTAACAGAAGGCTGCATCAG+TGG | 0.541189 | 4_4:+38892752 | Msa0680090:intron |
| GATAGATATCCTGCCAACAA+TGG | 0.541311 | 4_4:+38892802 | Msa0680090:CDS |
| TTACATTTCAGCAATGTATG+TGG | 0.542267 | 4_4:+38894687 | Msa0680090:CDS |
| CTGAAAATACTGAAGTATTG+GGG | 0.543478 | 4_4:+38892405 | Msa0680090:CDS |
| AACGAAGAAACCTTTAATCC+AGG | 0.550368 | 4_4:-38892262 | None:intergenic |
| ACCCGCGTTTCAAAAGCTCA+TGG | 0.553054 | 4_4:-38891702 | None:intergenic |
| ATCAACTTTCCAGTTGTCAC+CGG | 0.554135 | 4_4:-38892374 | None:intergenic |
| AGTTGGCATCTCTAAGTTGG+GGG | 0.556296 | 4_4:+38892889 | Msa0680090:CDS |
| ACACTCCACCCATTGTTGGC+AGG | 0.556804 | 4_4:-38892811 | None:intergenic |
| GGTCAAAATCTCTAATGTAC+CGG | 0.557966 | 4_4:+38892355 | Msa0680090:intron |
| AGCTTCTAATTGTTACTGAA+GGG | 0.558772 | 4_4:+38894030 | Msa0680090:CDS |
| AGAAGGCTGCATCAGTGGAC+CGG | 0.559317 | 4_4:+38892757 | Msa0680090:intron |
| AGAGGGTATAATGAGCATAT+GGG | 0.561618 | 4_4:+38893778 | Msa0680090:CDS |
| TCAAACAGTCGACGGACTAG+TGG | 0.564409 | 4_4:+38892210 | Msa0680090:CDS |
| TTTCAAAAGCTCATGGGTGA+CGG | 0.565331 | 4_4:-38891695 | None:intergenic |
| ATCAGACAAGGCTGCTCGAG+AGG | 0.566005 | 4_4:+38893760 | Msa0680090:CDS |
| CTAGGTTATCAATTGACTGA+TGG | 0.568515 | 4_4:+38892184 | Msa0680090:CDS |
| GCCTCCTCTTAATGATCATG+TGG | 0.569908 | 4_4:+38891867 | Msa0680090:CDS |
| CATTAAACGAATCCCCAAGT+TGG | 0.572312 | 4_4:-38891762 | None:intergenic |
| CAAGGAGCTATCTTGAAAGC+AGG | 0.572612 | 4_4:-38892848 | None:intergenic |
| TAATTTCCCATTCAAGGACA+AGG | 0.576906 | 4_4:+38892068 | Msa0680090:CDS |
| GGTCCCTTCATATTGCAGGC+AGG | 0.582076 | 4_4:+38891907 | Msa0680090:CDS |
| CGGAAGGGAAAAGATGATAG+GGG | 0.584449 | 4_4:+38891579 | None:intergenic |
| GTGGATGAAATTACTCTCGA+TGG | 0.586493 | 4_4:+38891886 | Msa0680090:CDS |
| TGACTCATCAATCAAACTGA+AGG | 0.590358 | 4_4:-38893645 | None:intergenic |
| TTCTAAAGCCAGAACCACAT+TGG | 0.591842 | 4_4:+38893394 | Msa0680090:CDS |
| CCCGCGTTTCAAAAGCTCAT+GGG | 0.598744 | 4_4:-38891701 | None:intergenic |
| GATTGATGAGTCATGCAAGT+TGG | 0.599963 | 4_4:+38893655 | Msa0680090:CDS |
| GATATCCTGCCAACAATGGG+TGG | 0.600127 | 4_4:+38892806 | Msa0680090:CDS |
| TTCATCTGCAGTTATAAGCA+AGG | 0.602376 | 4_4:+38892913 | Msa0680090:CDS |
| GGTGCTGCAAACGTGGCAGT+TGG | 0.605003 | 4_4:+38892872 | Msa0680090:CDS |
| TCAAAACCAAAACCATGAGT+AGG | 0.606007 | 4_4:+38891617 | Msa0680090:CDS |
| TCCTTGTGGTGCTGCAAACG+TGG | 0.606080 | 4_4:+38892865 | Msa0680090:CDS |
| TGAAAATACTGAAGTATTGG+GGG | 0.606433 | 4_4:+38892406 | Msa0680090:CDS |
| CAAATGCTTTGGCAGGTCGG+TGG | 0.607481 | 4_4:+38892151 | Msa0680090:intron |
| GTCGGTGGAATTGTCGAGCT+AGG | 0.609181 | 4_4:+38892166 | Msa0680090:CDS |
| GCCACGTTTGCAGCACCACA+AGG | 0.610779 | 4_4:-38892866 | None:intergenic |
| GGAACTATGGCCATCAGACA+AGG | 0.616523 | 4_4:+38893748 | Msa0680090:CDS |
| TCAGACAAGGCTGCTCGAGA+GGG | 0.618497 | 4_4:+38893761 | Msa0680090:CDS |
| ATCAGCGCTAAGTGTAACAA+AGG | 0.619496 | 4_4:-38893417 | None:intergenic |
| ATTGTTACTGAAGGGTCAGA+CGG | 0.620886 | 4_4:+38894038 | Msa0680090:CDS |
| TTCATCAAATATTACCACAA+GGG | 0.621063 | 4_4:-38894997 | None:intergenic |
| GTTGGCATCTCTAAGTTGGG+GGG | 0.621474 | 4_4:+38892890 | Msa0680090:CDS |
| GCTATTTCGAATGGTTCCGT+GGG | 0.622082 | 4_4:-38891664 | None:intergenic |
| GAACCTGCCTGCAATATGAA+GGG | 0.623437 | 4_4:-38891910 | None:intergenic |
| TCCACATGATCATTAAGAGG+AGG | 0.649580 | 4_4:-38891868 | None:intergenic |
| TCCGGAGGCATATCAGCACT+AGG | 0.651903 | 4_4:-38893470 | None:intergenic |
| GCTTTCAAGATAGCTCCTTG+TGG | 0.652401 | 4_4:+38892851 | Msa0680090:CDS |
| TTTCATCAAATATTACCACA+AGG | 0.658355 | 4_4:-38894998 | None:intergenic |
| GTTTGGTTTGAAGAGAGACA+AGG | 0.658780 | 4_4:+38891723 | Msa0680090:CDS |
| GGAATCTTTAGCAATCCTCA+AGG | 0.662729 | 4_4:-38893690 | None:intergenic |
| CGAAAGCATAAGCACTCCCA+CGG | 0.666034 | 4_4:+38891648 | Msa0680090:CDS |
| ACAGCTTGCATAATCAAAAG+GGG | 0.667091 | 4_4:-38894910 | None:intergenic |
| GATGGTGTTCAAACAGTCGA+CGG | 0.667224 | 4_4:+38892202 | Msa0680090:CDS |
| GGAAGGGAAAAGATGATAGG+GGG | 0.675544 | 4_4:+38891580 | None:intergenic |
| AGAATCAAACAGCATGCCAG+AGG | 0.677080 | 4_4:-38893375 | None:intergenic |
| AAGTGTAACAAAGGCCAATG+TGG | 0.678456 | 4_4:-38893408 | None:intergenic |
| TCTGACTCAGACTCATCCGG+AGG | 0.685824 | 4_4:-38893485 | None:intergenic |
| ATTAAGAGGAGGCAGTACAC+CGG | 0.703216 | 4_4:-38891857 | None:intergenic |
| GAAAATACTGAAGTATTGGG+GGG | 0.703982 | 4_4:+38892407 | Msa0680090:CDS |
| TTAATCCAGGATGCGCACGA+AGG | 0.709708 | 4_4:-38892249 | None:intergenic |
| GAAGGGAAAAGATGATAGGG+GGG | 0.723190 | 4_4:+38891581 | None:intergenic |
| CGGTTGTAGATATTACACCA+AGG | 0.754663 | 4_4:+38894058 | Msa0680090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTATTTTATTATTA+CGG | + | chr4_4:38891953-38891972 | Msa0680090:intron | 0.0% |
| !! | AAGATAAAAGTTTAATAAAT+GGG | + | chr4_4:38892482-38892501 | Msa0680090:intron | 10.0% |
| !! | TATATGTATTAAGATGAAAA+TGG | - | chr4_4:38892292-38892311 | None:intergenic | 15.0% |
| !! | GAAGATAAAAGTTTAATAAA+TGG | + | chr4_4:38892481-38892500 | Msa0680090:intron | 15.0% |
| !! | ATTTAAACAAAAAGTCTTTA+TGG | - | chr4_4:38893572-38893591 | None:intergenic | 15.0% |
| !! | AATAGAATGAATTAACTGAA+TGG | - | chr4_4:38891935-38891954 | None:intergenic | 20.0% |
| !! | CTAATTAGCATAACTTAATA+AGG | + | chr4_4:38892662-38892681 | Msa0680090:intron | 20.0% |
| !! | TAAAAGATATTCCTCAAAAT+GGG | - | chr4_4:38893170-38893189 | None:intergenic | 20.0% |
| !!! | TAGTTGGTTAGATTTTAAAA+TGG | - | chr4_4:38893210-38893229 | None:intergenic | 20.0% |
| !! | TATTCTTAGGTAAAGTAAAA+CGG | - | chr4_4:38893240-38893259 | None:intergenic | 20.0% |
| !!! | GTAATAGTATTCTGAATTTT+AGG | + | chr4_4:38893269-38893288 | Msa0680090:intron | 20.0% |
| !! | TTAAATAATGTTAATACCTC+TGG | + | chr4_4:38893359-38893378 | Msa0680090:CDS | 20.0% |
| !!! | TTTAATTTAATACTGATTGC+AGG | + | chr4_4:38893601-38893620 | Msa0680090:intron | 20.0% |
| !!! | CAGATTTTAATTGTCTAAAT+AGG | + | chr4_4:38894106-38894125 | Msa0680090:intron | 20.0% |
| !!! | TGATTACTAAATTTTTTTGC+AGG | + | chr4_4:38894335-38894354 | Msa0680090:intron | 20.0% |
| !!! | ATTTTTTTGCAGGATTTTAA+AGG | + | chr4_4:38894345-38894364 | Msa0680090:intron | 20.0% |
| !!! | TATATTTTGCATTAAATTGC+AGG | - | chr4_4:38894758-38894777 | None:intergenic | 20.0% |
| !! | TGCAATTTAATGCAAAATAT+AGG | + | chr4_4:38894757-38894776 | Msa0680090:CDS | 20.0% |
| ! | AATTCATAATTTCCCATTCA+AGG | + | chr4_4:38892062-38892081 | Msa0680090:CDS | 25.0% |
| ! | TATTTCCTTTGTATCATTTG+CGG | + | chr4_4:38892109-38892128 | Msa0680090:intron | 25.0% |
| !!! | AATGAATATAGTTCTGATCT+AGG | + | chr4_4:38892539-38892558 | Msa0680090:intron | 25.0% |
| !! | ACAAGTACTTTTATGAAGTT+TGG | + | chr4_4:38892583-38892602 | Msa0680090:intron | 25.0% |
| ! | ATAGAAGAATCATTTCACAT+GGG | - | chr4_4:38892636-38892655 | None:intergenic | 25.0% |
| ! | AATAGAAGAATCATTTCACA+TGG | - | chr4_4:38892637-38892656 | None:intergenic | 25.0% |
| !! | AACTTAATAAGGATGTTTTG+TGG | + | chr4_4:38892673-38892692 | Msa0680090:intron | 25.0% |
| ! | TGTTTATTGACATGGTTATT+TGG | + | chr4_4:38892950-38892969 | Msa0680090:intron | 25.0% |
| ! | AGATTTGAACAAATCAAACA+TGG | - | chr4_4:38893001-38893020 | None:intergenic | 25.0% |
| ! | GTAAAAGATATTCCTCAAAA+TGG | - | chr4_4:38893171-38893190 | None:intergenic | 25.0% |
| ! | TAAAATGGTTTCTATTCGAT+GGG | - | chr4_4:38893195-38893214 | None:intergenic | 25.0% |
| ! | TTAAAATGGTTTCTATTCGA+TGG | - | chr4_4:38893196-38893215 | None:intergenic | 25.0% |
| ! | ATTCTTAGGTAAAGTAAAAC+GGG | - | chr4_4:38893239-38893258 | None:intergenic | 25.0% |
| !!! | TTACAAGAAGTGTTATTCTT+AGG | - | chr4_4:38893253-38893272 | None:intergenic | 25.0% |
| !! | AATATCTTAACTCCTGTTTT+AGG | + | chr4_4:38893292-38893311 | Msa0680090:intron | 25.0% |
| ! | TAAACAGAGATGGAAATTAA+AGG | - | chr4_4:38893539-38893558 | None:intergenic | 25.0% |
| ! | AAATCTGAGTTAAATGACTT+TGG | - | chr4_4:38894093-38894112 | None:intergenic | 25.0% |
| ! | GAATTACCTCAAAAATACTT+GGG | - | chr4_4:38894461-38894480 | None:intergenic | 25.0% |
| ! | TGAATTACCTCAAAAATACT+TGG | - | chr4_4:38894462-38894481 | None:intergenic | 25.0% |
| !!! | TTGATGAAGTTTTTTTTCTG+TGG | + | chr4_4:38894637-38894656 | Msa0680090:intron | 25.0% |
| ! | AACATATCAATATGTTGAGT+TGG | + | chr4_4:38894884-38894903 | Msa0680090:three_prime_UTR | 25.0% |
| ! | TTCATCAAATATTACCACAA+GGG | - | chr4_4:38895000-38895019 | None:intergenic | 25.0% |
| ! | TTTCATCAAATATTACCACA+AGG | - | chr4_4:38895001-38895020 | None:intergenic | 25.0% |
| ATTCTCTCCAAGTAATCTAT+TGG | + | chr4_4:38892324-38892343 | Msa0680090:intron | 30.0% | |
| ACAAGTACCAATAGATTACT+TGG | - | chr4_4:38892334-38892353 | None:intergenic | 30.0% | |
| AGTAATCTATTGGTACTTGT+AGG | + | chr4_4:38892334-38892353 | Msa0680090:intron | 30.0% | |
| TCCTGAAAATACTGAAGTAT+TGG | + | chr4_4:38892403-38892422 | Msa0680090:CDS | 30.0% | |
| ! | CCTGAAAATACTGAAGTATT+GGG | + | chr4_4:38892404-38892423 | Msa0680090:CDS | 30.0% |
| !! | CTGAAAATACTGAAGTATTG+GGG | + | chr4_4:38892405-38892424 | Msa0680090:CDS | 30.0% |
| !! | TGAAAATACTGAAGTATTGG+GGG | + | chr4_4:38892406-38892425 | Msa0680090:CDS | 30.0% |
| ! | ATGAGCTAATCTAGAACATA+AGG | - | chr4_4:38892447-38892466 | None:intergenic | 30.0% |
| TAGCTCATGAATTGAAAACA+TGG | + | chr4_4:38892459-38892478 | Msa0680090:intron | 30.0% | |
| TATGATGATCTCTTAACAGA+AGG | + | chr4_4:38892740-38892759 | Msa0680090:intron | 30.0% | |
| TCTATGTCTGTTTATTGACA+TGG | + | chr4_4:38892942-38892961 | Msa0680090:intron | 30.0% | |
| GAATGTAACATTGTCATGTT+TGG | + | chr4_4:38893134-38893153 | Msa0680090:intron | 30.0% | |
| TGATCTTAACCTCATAAAGA+AGG | + | chr4_4:38893511-38893530 | Msa0680090:CDS | 30.0% | |
| ! | CCACATTTTATAAACAGAGA+TGG | - | chr4_4:38893549-38893568 | None:intergenic | 30.0% |
| CCATCTCTGTTTATAAAATG+TGG | + | chr4_4:38893546-38893565 | Msa0680090:intron | 30.0% | |
| CATAGTTCCAATCTCAAATT+CGG | - | chr4_4:38893737-38893756 | None:intergenic | 30.0% | |
| CAAAAAAGAATAACGTGCAA+TGG | - | chr4_4:38893877-38893896 | None:intergenic | 30.0% | |
| AATACAGCATCATCATCATA+AGG | - | chr4_4:38893984-38894003 | None:intergenic | 30.0% | |
| CAATTAGAAGCTTGAGATTA+GGG | - | chr4_4:38894022-38894041 | None:intergenic | 30.0% | |
| ACAATTAGAAGCTTGAGATT+AGG | - | chr4_4:38894023-38894042 | None:intergenic | 30.0% | |
| AAGCTTCTAATTGTTACTGA+AGG | + | chr4_4:38894029-38894048 | Msa0680090:CDS | 30.0% | |
| AGCTTCTAATTGTTACTGAA+GGG | + | chr4_4:38894030-38894049 | Msa0680090:CDS | 30.0% | |
| CAAAGAAGATAATGAAAGGA+AGG | - | chr4_4:38894141-38894160 | None:intergenic | 30.0% | |
| AGAGCAAAGAAGATAATGAA+AGG | - | chr4_4:38894145-38894164 | None:intergenic | 30.0% | |
| !! | GATTTTAAAGGCATAGTTAG+AGG | + | chr4_4:38894357-38894376 | Msa0680090:CDS | 30.0% |
| TTACATTTCAGCAATGTATG+TGG | + | chr4_4:38894687-38894706 | Msa0680090:CDS | 30.0% | |
| TCAAAACCAAAACCATGAGT+AGG | + | chr4_4:38891617-38891636 | Msa0680090:CDS | 35.0% | |
| ! | TCTTTTCCTACTCATGGTTT+TGG | - | chr4_4:38891626-38891645 | None:intergenic | 35.0% |
| ACCATTCGAAATAGCAATCT+CGG | + | chr4_4:38891672-38891691 | Msa0680090:CDS | 35.0% | |
| TCTTTGGATCTCAATTCTTG+TGG | + | chr4_4:38891832-38891851 | Msa0680090:CDS | 35.0% | |
| TCATCCACATGATCATTAAG+AGG | - | chr4_4:38891874-38891893 | None:intergenic | 35.0% | |
| GTAGTAGTAGTAGTCAATCA+TGG | - | chr4_4:38892006-38892025 | None:intergenic | 35.0% | |
| TAATTTCCCATTCAAGGACA+AGG | + | chr4_4:38892068-38892087 | Msa0680090:CDS | 35.0% | |
| CATTTGAGTGTTAAGTGTTC+AGG | - | chr4_4:38892137-38892156 | None:intergenic | 35.0% | |
| CACTTAACACTCAAATGCTT+TGG | + | chr4_4:38892140-38892159 | Msa0680090:intron | 35.0% | |
| CTAGGTTATCAATTGACTGA+TGG | + | chr4_4:38892184-38892203 | Msa0680090:CDS | 35.0% | |
| AACGAAGAAACCTTTAATCC+AGG | - | chr4_4:38892265-38892284 | None:intergenic | 35.0% | |
| GGTCAAAATCTCTAATGTAC+CGG | + | chr4_4:38892355-38892374 | Msa0680090:intron | 35.0% | |
| ! | CCCAATACTTCAGTATTTTC+AGG | - | chr4_4:38892407-38892426 | None:intergenic | 35.0% |
| !! | GAAAATACTGAAGTATTGGG+GGG | + | chr4_4:38892407-38892426 | Msa0680090:CDS | 35.0% |
| GTTTCACCAAAACAAACAAC+CGG | - | chr4_4:38892779-38892798 | None:intergenic | 35.0% | |
| ATAGATATCCTGCCAACAAT+GGG | + | chr4_4:38892803-38892822 | Msa0680090:CDS | 35.0% | |
| TTCATCTGCAGTTATAAGCA+AGG | + | chr4_4:38892913-38892932 | Msa0680090:CDS | 35.0% | |
| GGTTTCTTGTTACTATCTAC+AGG | + | chr4_4:38892971-38892990 | Msa0680090:intron | 35.0% | |
| ! | ACTGATTACAGTTTTCTGCA+TGG | + | chr4_4:38893060-38893079 | Msa0680090:intron | 35.0% |
| !! | ATTCCCAAGCTCATTTTTCA+GGG | - | chr4_4:38893118-38893137 | None:intergenic | 35.0% |
| GTAAAACGGGAAGTTATAGT+TGG | - | chr4_4:38893226-38893245 | None:intergenic | 35.0% | |
| !! | TCTTAACTCCTGTTTTAGGT+TGG | + | chr4_4:38893296-38893315 | Msa0680090:intron | 35.0% |
| ! | TAGGTTGGAGAAGATGAATT+TGG | + | chr4_4:38893311-38893330 | Msa0680090:intron | 35.0% |
| AGGTTGGAGAAGATGAATTT+GGG | + | chr4_4:38893312-38893331 | Msa0680090:intron | 35.0% | |
| ! | CATATCAGCACTAGGATTTT+CGG | - | chr4_4:38893465-38893484 | None:intergenic | 35.0% |
| !! | TTAAAGGCACCTTCTTTATG+AGG | - | chr4_4:38893523-38893542 | None:intergenic | 35.0% |
| ! | CAGGCTAAAGTATTCCATTA+TGG | + | chr4_4:38893620-38893639 | Msa0680090:intron | 35.0% |
| TCAAACTGAAGGAACCATAA+TGG | - | chr4_4:38893637-38893656 | None:intergenic | 35.0% | |
| TGACTCATCAATCAAACTGA+AGG | - | chr4_4:38893648-38893667 | None:intergenic | 35.0% | |
| TTGAGGATTGCTAAAGATTC+CGG | + | chr4_4:38893692-38893711 | Msa0680090:CDS | 35.0% | |
| ! | GTATGATCCGAATTTGAGAT+TGG | + | chr4_4:38893727-38893746 | Msa0680090:CDS | 35.0% |
| ! | CGAATTTGAGATTGGAACTA+TGG | + | chr4_4:38893735-38893754 | Msa0680090:CDS | 35.0% |
| ! | AGAGGGTATAATGAGCATAT+GGG | + | chr4_4:38893778-38893797 | Msa0680090:CDS | 35.0% |
| !!! | GAGATTGCTTTTTTGACTGA+TGG | + | chr4_4:38893951-38893970 | Msa0680090:CDS | 35.0% |
| !!! | ATTGCTTTTTTGACTGATGG+TGG | + | chr4_4:38893954-38893973 | Msa0680090:CDS | 35.0% |
| ACAACCTACTATTCGTCATT+GGG | - | chr4_4:38894233-38894252 | None:intergenic | 35.0% | |
| TACAACCTACTATTCGTCAT+TGG | - | chr4_4:38894234-38894253 | None:intergenic | 35.0% | |
| TAGGTTGTAAAACTTACGCA+AGG | + | chr4_4:38894245-38894264 | Msa0680090:intron | 35.0% | |
| AATCATTGTTAGCTGAATGC+TGG | - | chr4_4:38894320-38894339 | None:intergenic | 35.0% | |
| !! | TTCTGACCCAAGTATTTTTG+AGG | + | chr4_4:38894452-38894471 | Msa0680090:CDS | 35.0% |
| !!! | TGAAGTTTTTTTTCTGTGGC+AGG | + | chr4_4:38894641-38894660 | Msa0680090:intron | 35.0% |
| ACAGCTTGCATAATCAAAAG+GGG | - | chr4_4:38894913-38894932 | None:intergenic | 35.0% | |
| GACAGCTTGCATAATCAAAA+GGG | - | chr4_4:38894914-38894933 | None:intergenic | 35.0% | |
| TTTCAAAAGCTCATGGGTGA+CGG | - | chr4_4:38891698-38891717 | None:intergenic | 40.0% | |
| !! | GTTTGGTTTGAAGAGAGACA+AGG | + | chr4_4:38891723-38891742 | Msa0680090:CDS | 40.0% |
| ! | CTGATTTTCTTCGCCAACTT+GGG | + | chr4_4:38891749-38891768 | Msa0680090:CDS | 40.0% |
| ! | TGATTTTCTTCGCCAACTTG+GGG | + | chr4_4:38891750-38891769 | Msa0680090:CDS | 40.0% |
| CATTAAACGAATCCCCAAGT+TGG | - | chr4_4:38891765-38891784 | None:intergenic | 40.0% | |
| CAACTTGGGGATTCGTTTAA+TGG | + | chr4_4:38891763-38891782 | Msa0680090:CDS | 40.0% | |
| TCTGGACAAGTTTCTGTCTT+TGG | + | chr4_4:38891816-38891835 | Msa0680090:CDS | 40.0% | |
| GATCTCAATTCTTGTGGTAC+CGG | + | chr4_4:38891838-38891857 | Msa0680090:CDS | 40.0% | |
| TCCACATGATCATTAAGAGG+AGG | - | chr4_4:38891871-38891890 | None:intergenic | 40.0% | |
| GTGGATGAAATTACTCTCGA+TGG | + | chr4_4:38891886-38891905 | Msa0680090:CDS | 40.0% | |
| AGGTTCCGCAAATGATACAA+AGG | - | chr4_4:38892117-38892136 | None:intergenic | 40.0% | |
| TAACACTCAAATGCTTTGGC+AGG | + | chr4_4:38892144-38892163 | Msa0680090:intron | 40.0% | |
| ATCAACTTTCCAGTTGTCAC+CGG | - | chr4_4:38892377-38892396 | None:intergenic | 40.0% | |
| GATAGATATCCTGCCAACAA+TGG | + | chr4_4:38892802-38892821 | Msa0680090:CDS | 40.0% | |
| TATCTTGAAAGCAGGCACTT+TGG | - | chr4_4:38892843-38892862 | None:intergenic | 40.0% | |
| AACTCCCTGAAAAATGAGCT+TGG | + | chr4_4:38893111-38893130 | Msa0680090:intron | 40.0% | |
| ACTCCCTGAAAAATGAGCTT+GGG | + | chr4_4:38893112-38893131 | Msa0680090:intron | 40.0% | |
| !! | CATTCCCAAGCTCATTTTTC+AGG | - | chr4_4:38893119-38893138 | None:intergenic | 40.0% |
| ! | GTTAAAGTTCGCCCATTTTG+AGG | + | chr4_4:38893156-38893175 | Msa0680090:intron | 40.0% |
| CATCTTCTCCAACCTAAAAC+AGG | - | chr4_4:38893307-38893326 | None:intergenic | 40.0% | |
| AGATGAATTTGGGCGTATGT+TGG | + | chr4_4:38893322-38893341 | Msa0680090:CDS | 40.0% | |
| !! | TTCTAAAGCCAGAACCACAT+TGG | + | chr4_4:38893394-38893413 | Msa0680090:CDS | 40.0% |
| AAGTGTAACAAAGGCCAATG+TGG | - | chr4_4:38893411-38893430 | None:intergenic | 40.0% | |
| ATCAGCGCTAAGTGTAACAA+AGG | - | chr4_4:38893420-38893439 | None:intergenic | 40.0% | |
| ! | TTTGTTACACTTAGCGCTGA+TGG | + | chr4_4:38893419-38893438 | Msa0680090:CDS | 40.0% |
| GATTGATGAGTCATGCAAGT+TGG | + | chr4_4:38893655-38893674 | Msa0680090:CDS | 40.0% | |
| GGAATCTTTAGCAATCCTCA+AGG | - | chr4_4:38893693-38893712 | None:intergenic | 40.0% | |
| ATCATACGAGAGAATGCAAC+CGG | - | chr4_4:38893714-38893733 | None:intergenic | 40.0% | |
| ! | GAGAGGGTATAATGAGCATA+TGG | + | chr4_4:38893777-38893796 | Msa0680090:CDS | 40.0% |
| ATTGTTACTGAAGGGTCAGA+CGG | + | chr4_4:38894038-38894057 | Msa0680090:CDS | 40.0% | |
| CGGTTGTAGATATTACACCA+AGG | + | chr4_4:38894058-38894077 | Msa0680090:CDS | 40.0% | |
| GACTTTGGTAAGCTTTACCT+TGG | - | chr4_4:38894078-38894097 | None:intergenic | 40.0% | |
| CAACATTTCAGTCCACTCAT+CGG | - | chr4_4:38894173-38894192 | None:intergenic | 40.0% | |
| ! | CTGCTGATGCATTTGTTAGT+GGG | + | chr4_4:38894412-38894431 | Msa0680090:CDS | 40.0% |
| AGAAGAAAGTTGCGAGTGTT+TGG | + | chr4_4:38894612-38894631 | Msa0680090:intron | 40.0% | |
| !!! | TTTTTTTCTGTGGCAGGATG+AGG | + | chr4_4:38894647-38894666 | Msa0680090:intron | 40.0% |
| ! | GCAGGACATCATCTTTTGTA+GGG | - | chr4_4:38894740-38894759 | None:intergenic | 40.0% |
| ! | TGCAGGACATCATCTTTTGT+AGG | - | chr4_4:38894741-38894760 | None:intergenic | 40.0% |
| AAGTCCTGTACTGCAACATT+CGG | + | chr4_4:38894856-38894875 | Msa0680090:three_prime_UTR | 40.0% | |
| CGACAGCTTGCATAATCAAA+AGG | - | chr4_4:38894915-38894934 | None:intergenic | 40.0% | |
| ! | TTCGCGTCTTTTCCTACTCA+TGG | - | chr4_4:38891632-38891651 | None:intergenic | 45.0% |
| ! | GCTATTTCGAATGGTTCCGT+GGG | - | chr4_4:38891667-38891686 | None:intergenic | 45.0% |
| !! | TGCTATTTCGAATGGTTCCG+TGG | - | chr4_4:38891668-38891687 | None:intergenic | 45.0% |
| !! | GCCGAGATTGCTATTTCGAA+TGG | - | chr4_4:38891676-38891695 | None:intergenic | 45.0% |
| !!! | ACCCATGAGCTTTTGAAACG+CGG | + | chr4_4:38891700-38891719 | Msa0680090:CDS | 45.0% |
| !! | GCTGATTTTCTTCGCCAACT+TGG | + | chr4_4:38891748-38891767 | Msa0680090:CDS | 45.0% |
| !! | TTGCGCCATTTTGGAGACAT+CGG | - | chr4_4:38891791-38891810 | None:intergenic | 45.0% |
| ! | CAGACAGATTTGCGCCATTT+TGG | - | chr4_4:38891800-38891819 | None:intergenic | 45.0% |
| CAAAATGGCGCAAATCTGTC+TGG | + | chr4_4:38891798-38891817 | Msa0680090:CDS | 45.0% | |
| ATTAAGAGGAGGCAGTACAC+CGG | - | chr4_4:38891860-38891879 | None:intergenic | 45.0% | |
| GCCTCCTCTTAATGATCATG+TGG | + | chr4_4:38891867-38891886 | Msa0680090:CDS | 45.0% | |
| GAACCTGCCTGCAATATGAA+GGG | - | chr4_4:38891913-38891932 | None:intergenic | 45.0% | |
| CAGCAACCTTGTCCTTGAAT+GGG | - | chr4_4:38892077-38892096 | None:intergenic | 45.0% | |
| TCAGCAACCTTGTCCTTGAA+TGG | - | chr4_4:38892078-38892097 | None:intergenic | 45.0% | |
| ACTCAAATGCTTTGGCAGGT+CGG | + | chr4_4:38892148-38892167 | Msa0680090:intron | 45.0% | |
| GATGGTGTTCAAACAGTCGA+CGG | + | chr4_4:38892202-38892221 | Msa0680090:CDS | 45.0% | |
| ! | TCTAATGTACCGGTGACAAC+TGG | + | chr4_4:38892365-38892384 | Msa0680090:CDS | 45.0% |
| !! | AATACTGAAGTATTGGGGGG+TGG | + | chr4_4:38892410-38892429 | Msa0680090:CDS | 45.0% |
| TTAACAGAAGGCTGCATCAG+TGG | + | chr4_4:38892752-38892771 | Msa0680090:intron | 45.0% | |
| ! | AGTGGACCGGTTGTTTGTTT+TGG | + | chr4_4:38892770-38892789 | Msa0680090:CDS | 45.0% |
| CAAGGAGCTATCTTGAAAGC+AGG | - | chr4_4:38892851-38892870 | None:intergenic | 45.0% | |
| GCTTTCAAGATAGCTCCTTG+TGG | + | chr4_4:38892851-38892870 | Msa0680090:CDS | 45.0% | |
| GCAGTTGGCATCTCTAAGTT+GGG | + | chr4_4:38892887-38892906 | Msa0680090:CDS | 45.0% | |
| CAGTTGGCATCTCTAAGTTG+GGG | + | chr4_4:38892888-38892907 | Msa0680090:CDS | 45.0% | |
| ! | AGTTGGCATCTCTAAGTTGG+GGG | + | chr4_4:38892889-38892908 | Msa0680090:CDS | 45.0% |
| ! | CATGGTTTGTGCGAGTTTCA+AGG | + | chr4_4:38893078-38893097 | Msa0680090:intron | 45.0% |
| AGAATCAAACAGCATGCCAG+AGG | - | chr4_4:38893378-38893397 | None:intergenic | 45.0% | |
| AACAAAGGCCAATGTGGTTC+TGG | - | chr4_4:38893405-38893424 | None:intergenic | 45.0% | |
| TTGCTCTCTATTCCGATGAG+TGG | + | chr4_4:38894158-38894177 | Msa0680090:intron | 45.0% | |
| !! | CGATGAGTGGACTGAAATGT+TGG | + | chr4_4:38894171-38894190 | Msa0680090:intron | 45.0% |
| GACACCCAATGACGAATAGT+AGG | + | chr4_4:38894226-38894245 | Msa0680090:intron | 45.0% | |
| ! | GCTGCTGATGCATTTGTTAG+TGG | + | chr4_4:38894411-38894430 | Msa0680090:CDS | 45.0% |
| ! | CATCTTTTGTAGGGTAGTGC+AGG | - | chr4_4:38894731-38894750 | None:intergenic | 45.0% |
| AGTCCTGTACTGCAACATTC+GGG | + | chr4_4:38894857-38894876 | Msa0680090:three_prime_UTR | 45.0% | |
| !! | TATATTAGTAAAAAAAAAAA+AGG | - | chr4_4:38892719-38892738 | None:intergenic | 5.0% |
| ! | CGAAAGCATAAGCACTCCCA+CGG | + | chr4_4:38891648-38891667 | Msa0680090:CDS | 50.0% |
| CCCGCGTTTCAAAAGCTCAT+GGG | - | chr4_4:38891704-38891723 | None:intergenic | 50.0% | |
| !!! | CCCATGAGCTTTTGAAACGC+GGG | + | chr4_4:38891701-38891720 | Msa0680090:CDS | 50.0% |
| ACCCGCGTTTCAAAAGCTCA+TGG | - | chr4_4:38891705-38891724 | None:intergenic | 50.0% | |
| !!! | GAGCTTTTGAAACGCGGGTT+TGG | + | chr4_4:38891706-38891725 | Msa0680090:CDS | 50.0% |
| TGGCTCCGATGTCTCCAAAA+TGG | + | chr4_4:38891783-38891802 | Msa0680090:CDS | 50.0% | |
| CGATGGTCCCTTCATATTGC+AGG | + | chr4_4:38891903-38891922 | Msa0680090:CDS | 50.0% | |
| GGAACCTGCCTGCAATATGA+AGG | - | chr4_4:38891914-38891933 | None:intergenic | 50.0% | |
| !! | TCAAACAGTCGACGGACTAG+TGG | + | chr4_4:38892210-38892229 | Msa0680090:CDS | 50.0% |
| CTAGTGGTCGAGTCTGTTGA+AGG | + | chr4_4:38892226-38892245 | Msa0680090:CDS | 50.0% | |
| TTAATCCAGGATGCGCACGA+AGG | - | chr4_4:38892252-38892271 | None:intergenic | 50.0% | |
| TCGTGCGCATCCTGGATTAA+AGG | + | chr4_4:38892252-38892271 | Msa0680090:CDS | 50.0% | |
| !! | GAAGTATTGGGGGGTGGATT+AGG | + | chr4_4:38892416-38892435 | Msa0680090:CDS | 50.0% |
| GATATCCTGCCAACAATGGG+TGG | + | chr4_4:38892806-38892825 | Msa0680090:CDS | 50.0% | |
| AGAGACACTCCACCCATTGT+TGG | - | chr4_4:38892818-38892837 | None:intergenic | 50.0% | |
| GGCAGTTGGCATCTCTAAGT+TGG | + | chr4_4:38892886-38892905 | Msa0680090:CDS | 50.0% | |
| ! | GTTGGCATCTCTAAGTTGGG+GGG | + | chr4_4:38892890-38892909 | Msa0680090:CDS | 50.0% |
| !! | TCCTAGTGCTGATATGCCTC+CGG | + | chr4_4:38893469-38893488 | Msa0680090:CDS | 50.0% |
| ! | AGCTCTGACTCAGACTCATC+CGG | - | chr4_4:38893491-38893510 | None:intergenic | 50.0% |
| GGAACTATGGCCATCAGACA+AGG | + | chr4_4:38893748-38893767 | Msa0680090:CDS | 50.0% | |
| ! | CTTACGCAAGGTTTGCTTCG+AGG | + | chr4_4:38894257-38894276 | Msa0680090:intron | 50.0% |
| CAATGTATGTGGCGCAATCC+AGG | + | chr4_4:38894698-38894717 | Msa0680090:CDS | 50.0% | |
| TAGCCCGAATGTTGCAGTAC+AGG | - | chr4_4:38894863-38894882 | None:intergenic | 50.0% | |
| !!! | TCCATTTTGACTCGCCCTTG+TGG | + | chr4_4:38894983-38895002 | Msa0680090:three_prime_UTR | 50.0% |
| ACCACAAGGGCGAGTCAAAA+TGG | - | chr4_4:38894987-38895006 | None:intergenic | 50.0% | |
| GGTCCCTTCATATTGCAGGC+AGG | + | chr4_4:38891907-38891926 | Msa0680090:CDS | 55.0% | |
| CAAATGCTTTGGCAGGTCGG+TGG | + | chr4_4:38892151-38892170 | Msa0680090:intron | 55.0% | |
| GTCGGTGGAATTGTCGAGCT+AGG | + | chr4_4:38892166-38892185 | Msa0680090:CDS | 55.0% | |
| AGAAGGCTGCATCAGTGGAC+CGG | + | chr4_4:38892757-38892776 | Msa0680090:intron | 55.0% | |
| ACACTCCACCCATTGTTGGC+AGG | - | chr4_4:38892814-38892833 | None:intergenic | 55.0% | |
| !! | TCCTTGTGGTGCTGCAAACG+TGG | + | chr4_4:38892865-38892884 | Msa0680090:CDS | 55.0% |
| ! | TCCGGAGGCATATCAGCACT+AGG | - | chr4_4:38893473-38893492 | None:intergenic | 55.0% |
| TCTGACTCAGACTCATCCGG+AGG | - | chr4_4:38893488-38893507 | None:intergenic | 55.0% | |
| TGGCTCATCTTGCTGCCTTG+AGG | + | chr4_4:38893675-38893694 | Msa0680090:CDS | 55.0% | |
| ! | TCTCGAGCAGCCTTGTCTGA+TGG | - | chr4_4:38893761-38893780 | None:intergenic | 55.0% |
| ATCAGACAAGGCTGCTCGAG+AGG | + | chr4_4:38893760-38893779 | Msa0680090:CDS | 55.0% | |
| TCAGACAAGGCTGCTCGAGA+GGG | + | chr4_4:38893761-38893780 | Msa0680090:CDS | 55.0% | |
| GCAGCAGCAGTTGTGTCAAC+AGG | - | chr4_4:38894396-38894415 | None:intergenic | 55.0% | |
| GCCACGTTTGCAGCACCACA+AGG | - | chr4_4:38892869-38892888 | None:intergenic | 60.0% | |
| ! | GGTGCTGCAAACGTGGCAGT+TGG | + | chr4_4:38892872-38892891 | Msa0680090:CDS | 60.0% |
| GAAGGCCTTCGTGCGCATCC+TGG | + | chr4_4:38892244-38892263 | Msa0680090:CDS | 65.0% | |
| GGTAGTGCAGGCTCGTCGCC+TGG | - | chr4_4:38894719-38894738 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 38891592 | 38895033 | 38891592 | ID=Msa0680090;Name=Msa0680090 |
| chr4_4 | mRNA | 38891592 | 38895033 | 38891592 | ID=Msa0680090-mRNA-1;Parent=Msa0680090;Name=Msa0680090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.77|0.8|0.9|0.77|0.9|10|230|519 |
| chr4_4 | exon | 38891592 | 38891928 | 38891592 | ID=Msa0680090-mRNA-1:exon:9165;Parent=Msa0680090-mRNA-1 |
| chr4_4 | exon | 38892049 | 38892089 | 38892049 | ID=Msa0680090-mRNA-1:exon:9166;Parent=Msa0680090-mRNA-1 |
| chr4_4 | exon | 38892166 | 38892273 | 38892166 | ID=Msa0680090-mRNA-1:exon:9167;Parent=Msa0680090-mRNA-1 |
| chr4_4 | exon | 38892356 | 38892437 | 38892356 | ID=Msa0680090-mRNA-1:exon:9168;Parent=Msa0680090-mRNA-1 |
| chr4_4 | exon | 38892759 | 38892934 | 38892759 | ID=Msa0680090-mRNA-1:exon:9169;Parent=Msa0680090-mRNA-1 |
| chr4_4 | exon | 38893314 | 38893532 | 38893314 | ID=Msa0680090-mRNA-1:exon:9170;Parent=Msa0680090-mRNA-1 |
| chr4_4 | exon | 38893623 | 38893820 | 38893623 | ID=Msa0680090-mRNA-1:exon:9171;Parent=Msa0680090-mRNA-1 |
| chr4_4 | exon | 38893939 | 38894079 | 38893939 | ID=Msa0680090-mRNA-1:exon:9172;Parent=Msa0680090-mRNA-1 |
| chr4_4 | exon | 38894357 | 38894473 | 38894357 | ID=Msa0680090-mRNA-1:exon:9173;Parent=Msa0680090-mRNA-1 |
| chr4_4 | exon | 38894663 | 38895033 | 38894663 | ID=Msa0680090-mRNA-1:exon:9174;Parent=Msa0680090-mRNA-1 |
| chr4_4 | CDS | 38891592 | 38891928 | 38891592 | ID=Msa0680090-mRNA-1:cds;Parent=Msa0680090-mRNA-1 |
| chr4_4 | CDS | 38892049 | 38892089 | 38892049 | ID=Msa0680090-mRNA-1:cds;Parent=Msa0680090-mRNA-1 |
| chr4_4 | CDS | 38892166 | 38892273 | 38892166 | ID=Msa0680090-mRNA-1:cds;Parent=Msa0680090-mRNA-1 |
| chr4_4 | CDS | 38892356 | 38892437 | 38892356 | ID=Msa0680090-mRNA-1:cds;Parent=Msa0680090-mRNA-1 |
| chr4_4 | CDS | 38892759 | 38892934 | 38892759 | ID=Msa0680090-mRNA-1:cds;Parent=Msa0680090-mRNA-1 |
| chr4_4 | CDS | 38893314 | 38893532 | 38893314 | ID=Msa0680090-mRNA-1:cds;Parent=Msa0680090-mRNA-1 |
| chr4_4 | CDS | 38893623 | 38893820 | 38893623 | ID=Msa0680090-mRNA-1:cds;Parent=Msa0680090-mRNA-1 |
| chr4_4 | CDS | 38893939 | 38894079 | 38893939 | ID=Msa0680090-mRNA-1:cds;Parent=Msa0680090-mRNA-1 |
| chr4_4 | CDS | 38894357 | 38894473 | 38894357 | ID=Msa0680090-mRNA-1:cds;Parent=Msa0680090-mRNA-1 |
| chr4_4 | CDS | 38894663 | 38894803 | 38894663 | ID=Msa0680090-mRNA-1:cds;Parent=Msa0680090-mRNA-1 |
| chr4_4 | three_prime_UTR | 38894804 | 38895033 | 38894804 | ID=Msa0680090-mRNA-1:three_prime_utr;Parent=Msa0680090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
