Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0680700 | XP_003606163.2 | 98.293 | 410 | 7 | 0 | 8 | 417 | 83 | 492 | 0.0 | 843 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0680700 | sp|Q93ZB9|FACR3_ARATH | 58.477 | 407 | 168 | 1 | 10 | 416 | 88 | 493 | 0.0 | 517 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0680700 | G7JJM0 | 98.293 | 410 | 7 | 0 | 8 | 417 | 83 | 492 | 0.0 | 843 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003700 | Msa0680700 | 0.808342 | 3.246512e-50 | -8.615850e-47 |
Msa0644800 | Msa0680700 | 0.912513 | 1.787553e-83 | -8.615850e-47 |
Msa0680700 | Msa1078170 | 0.813159 | 2.947984e-51 | -8.615850e-47 |
Msa0680700 | Msa1093840 | 0.822141 | 2.776297e-53 | -8.615850e-47 |
Msa0680700 | Msa1123380 | 0.800422 | 1.452188e-48 | -8.615850e-47 |
Msa0680700 | Msa1203710 | 0.808042 | 3.760448e-50 | -8.615850e-47 |
Msa0680700 | Msa1221060 | 0.813450 | 2.543841e-51 | -8.615850e-47 |
Msa0680700 | Msa1251160 | 0.816941 | 4.266262e-52 | -8.615850e-47 |
Msa0680700 | Msa1303240 | 0.807393 | 5.167764e-50 | -8.615850e-47 |
Msa0680700 | Msa1303250 | 0.809276 | 2.050282e-50 | -8.615850e-47 |
Msa0680700 | Msa1361400 | 0.817017 | 4.100473e-52 | -8.615850e-47 |
Msa0680700 | Msa1361410 | 0.806293 | 8.826795e-50 | -8.615850e-47 |
Msa0680700 | Msa1451160 | 0.825604 | 4.281790e-54 | -8.615850e-47 |
Msa0456880 | Msa0680700 | 0.805877 | 1.079804e-49 | -8.615850e-47 |
Msa0277180 | Msa0680700 | 0.800015 | 1.757292e-48 | -8.615850e-47 |
Msa0339500 | Msa0680700 | 0.803243 | 3.825548e-49 | -8.615850e-47 |
Msa0545860 | Msa0680700 | 0.852872 | 3.470096e-61 | -8.615850e-47 |
Msa0601530 | Msa0680700 | 0.921779 | 2.308082e-88 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0680700 | MtrunA17_Chr4g0026701 | 98.293 | 410 | 7 | 0 | 8 | 417 | 83 | 492 | 0.0 | 843 |
Msa0680700 | MtrunA17_Chr2g0321181 | 71.463 | 410 | 117 | 0 | 8 | 417 | 82 | 491 | 0.0 | 641 |
Msa0680700 | MtrunA17_Chr2g0321201 | 69.268 | 410 | 125 | 1 | 8 | 417 | 84 | 492 | 0.0 | 620 |
Msa0680700 | MtrunA17_Chr4g0026691 | 68.537 | 410 | 129 | 0 | 8 | 417 | 82 | 491 | 0.0 | 611 |
Msa0680700 | MtrunA17_Chr4g0026711 | 47.101 | 414 | 215 | 2 | 8 | 417 | 82 | 495 | 1.11e-134 | 395 |
Msa0680700 | MtrunA17_Chr4g0026771 | 45.542 | 415 | 220 | 4 | 8 | 417 | 79 | 492 | 4.97e-129 | 381 |
Msa0680700 | MtrunA17_Chr6g0465391 | 45.521 | 413 | 188 | 5 | 8 | 417 | 82 | 460 | 8.21e-121 | 358 |
Msa0680700 | MtrunA17_Chr1g0176054 | 38.928 | 429 | 237 | 7 | 3 | 417 | 191 | 608 | 2.33e-96 | 301 |
Msa0680700 | MtrunA17_Chr5g0419501 | 37.188 | 320 | 144 | 4 | 8 | 324 | 82 | 347 | 1.15e-61 | 203 |
Msa0680700 | MtrunA17_Chr5g0431251 | 49.231 | 130 | 66 | 0 | 106 | 235 | 1 | 130 | 7.63e-43 | 147 |
Msa0680700 | MtrunA17_Chr4g0026911 | 42.077 | 183 | 102 | 4 | 235 | 414 | 3 | 184 | 9.44e-42 | 145 |
Msa0680700 | MtrunA17_Chr5g0431281 | 40.323 | 186 | 105 | 3 | 235 | 417 | 28 | 210 | 1.00e-40 | 144 |
Msa0680700 | MtrunA17_Chr4g0026891 | 45.333 | 150 | 78 | 2 | 8 | 153 | 79 | 228 | 4.00e-38 | 139 |
Msa0680700 | MtrunA17_Chr6g0465381 | 44.898 | 147 | 79 | 1 | 169 | 313 | 1 | 147 | 3.05e-31 | 117 |
Msa0680700 | MtrunA17_Chr4g0026901 | 66.667 | 57 | 19 | 0 | 153 | 209 | 16 | 72 | 4.29e-23 | 92.4 |
Msa0680700 | MtrunA17_Chr5g0419491 | 44.681 | 94 | 52 | 0 | 324 | 417 | 7 | 100 | 8.55e-22 | 89.4 |
Msa0680700 | MtrunA17_Chr5g0431271 | 56.716 | 67 | 29 | 0 | 169 | 235 | 1 | 67 | 1.06e-21 | 90.1 |
Msa0680700 | MtrunA17_Chr5g0431261 | 36.667 | 90 | 57 | 0 | 235 | 324 | 3 | 92 | 5.78e-16 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0680700 | AT4G33790.1 | 58.477 | 407 | 168 | 1 | 10 | 416 | 88 | 493 | 0.0 | 517 |
Msa0680700 | AT4G33790.2 | 59.055 | 381 | 155 | 1 | 36 | 416 | 1 | 380 | 6.25e-174 | 491 |
Msa0680700 | AT3G44540.1 | 53.771 | 411 | 189 | 1 | 8 | 417 | 82 | 492 | 2.86e-163 | 468 |
Msa0680700 | AT5G22500.1 | 51.456 | 412 | 197 | 2 | 7 | 417 | 81 | 490 | 2.19e-159 | 458 |
Msa0680700 | AT3G44550.1 | 50.361 | 415 | 200 | 3 | 8 | 417 | 82 | 495 | 2.03e-147 | 428 |
Msa0680700 | AT3G44550.2 | 51.163 | 387 | 183 | 3 | 36 | 417 | 1 | 386 | 6.66e-140 | 405 |
Msa0680700 | AT3G44560.1 | 49.398 | 415 | 204 | 3 | 8 | 417 | 82 | 495 | 2.96e-137 | 402 |
Msa0680700 | AT5G22420.4 | 51.233 | 365 | 173 | 4 | 41 | 404 | 6 | 366 | 3.40e-131 | 382 |
Msa0680700 | AT5G22500.2 | 54.088 | 318 | 144 | 1 | 7 | 324 | 81 | 396 | 5.64e-128 | 375 |
Msa0680700 | AT5G22420.1 | 46.552 | 406 | 211 | 5 | 1 | 404 | 1 | 402 | 1.20e-124 | 367 |
Msa0680700 | AT5G22420.3 | 50.568 | 352 | 169 | 4 | 54 | 404 | 3 | 350 | 1.08e-123 | 363 |
Msa0680700 | AT5G22420.6 | 50.568 | 352 | 169 | 4 | 54 | 404 | 3 | 350 | 1.08e-123 | 363 |
Msa0680700 | AT3G44560.3 | 50.689 | 363 | 176 | 2 | 8 | 368 | 82 | 443 | 6.73e-122 | 362 |
Msa0680700 | AT3G44560.2 | 52.336 | 321 | 150 | 2 | 8 | 326 | 82 | 401 | 7.55e-112 | 335 |
Msa0680700 | AT5G22420.5 | 49.051 | 316 | 156 | 4 | 90 | 404 | 4 | 315 | 9.50e-105 | 313 |
Msa0680700 | AT3G44540.2 | 59.130 | 230 | 94 | 0 | 8 | 237 | 82 | 311 | 8.70e-99 | 297 |
Msa0680700 | AT3G44540.3 | 59.130 | 230 | 94 | 0 | 8 | 237 | 82 | 311 | 8.70e-99 | 297 |
Msa0680700 | AT5G22420.2 | 48.333 | 300 | 150 | 4 | 106 | 404 | 1 | 296 | 3.21e-97 | 293 |
Msa0680700 | AT5G22420.7 | 48.333 | 300 | 150 | 4 | 106 | 404 | 1 | 296 | 3.21e-97 | 293 |
Msa0680700 | AT3G11980.1 | 38.498 | 426 | 242 | 8 | 4 | 417 | 196 | 613 | 1.19e-95 | 299 |
Msa0680700 | AT3G56700.2 | 34.314 | 408 | 247 | 7 | 7 | 413 | 152 | 539 | 5.88e-75 | 243 |
Msa0680700 | AT3G56700.1 | 32.353 | 408 | 234 | 8 | 7 | 413 | 152 | 518 | 1.15e-63 | 213 |
Find 100 sgRNAs with CRISPR-Local
Find 507 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGTTACTTGCTTCCTTTAA+AGG | 0.098124 | 4_4:+39863621 | Msa0680700:CDS |
AGAAATTGAATAACCTTTAA+AGG | 0.182202 | 4_4:-39863634 | None:intergenic |
CAACTTGGTGTTTCACTAAA+TGG | 0.185971 | 4_4:+39862177 | Msa0680700:CDS |
TAAAATTGCCATGAAGGATT+TGG | 0.220004 | 4_4:+39862290 | Msa0680700:CDS |
TGCGTTTGGTTGAACTTTAC+AGG | 0.238251 | 4_4:+39864756 | Msa0680700:CDS |
TTTCTCTCTATATATATATT+TGG | 0.267188 | 4_4:+39856788 | None:intergenic |
ATGCTTCCTTGCAGACTTAG+AGG | 0.301520 | 4_4:+39862802 | Msa0680700:CDS |
TTCATGAACATTCATATTCC+TGG | 0.304377 | 4_4:+39865048 | Msa0680700:CDS |
TGTAACTTTGCCAACTTTGA+TGG | 0.304948 | 4_4:-39863557 | None:intergenic |
CCAAGAAAATTTCAATTTGA+AGG | 0.310827 | 4_4:+39859789 | Msa0680700:CDS |
GCCAGAGAGATTAATAATAT+TGG | 0.312899 | 4_4:+39865123 | Msa0680700:three_prime_UTR |
TTTCCACCAATGGATCAATT+TGG | 0.317863 | 4_4:+39856907 | Msa0680700:five_prime_UTR |
GACAGTTTAATTGTTGCATA+TGG | 0.320149 | 4_4:+39862764 | Msa0680700:CDS |
TGCAACAATTAAACTGTCTA+TGG | 0.329367 | 4_4:-39862759 | None:intergenic |
CCTTGAGCATAAGAATGTTT+TGG | 0.340479 | 4_4:+39856945 | Msa0680700:five_prime_UTR |
CTCCATTCCCAAATCCTTCA+TGG | 0.341014 | 4_4:-39862298 | None:intergenic |
AAAATTGCCATGAAGGATTT+GGG | 0.357512 | 4_4:+39862291 | Msa0680700:CDS |
GCATTGGGTTTAAATACATT+TGG | 0.366725 | 4_4:+39860028 | Msa0680700:CDS |
AGATAAAGTTTCTTCACATT+TGG | 0.367398 | 4_4:-39857144 | None:intergenic |
CAGAATATAGTTTCACTTGA+AGG | 0.368930 | 4_4:-39865085 | None:intergenic |
CAAAGAACCTTTCCCTGGTT+GGG | 0.394468 | 4_4:+39862600 | Msa0680700:CDS |
ACCAATATTATTAATCTCTC+TGG | 0.400163 | 4_4:-39865124 | None:intergenic |
GTATAACTCTTGAAGTAGAT+TGG | 0.417054 | 4_4:-39859815 | None:intergenic |
TAAGTGCTGGTAATGATTGT+AGG | 0.428342 | 4_4:-39862577 | None:intergenic |
AGGCCTTATGTGTTCTTCAA+TGG | 0.430189 | 4_4:+39864776 | Msa0680700:CDS |
GTGCTTGTCCACGTATCAAC+AGG | 0.430498 | 4_4:+39860097 | Msa0680700:CDS |
GAAGCAGATCCCTGCTGATA+TGG | 0.433499 | 4_4:+39863366 | Msa0680700:intron |
TTAATTGTTGCATATGGTAA+AGG | 0.436186 | 4_4:+39862770 | Msa0680700:CDS |
CAACCAAACGCATCACAGTA+TGG | 0.440243 | 4_4:-39864745 | None:intergenic |
AGTTGGCAAAGTTACAGTAT+TGG | 0.448842 | 4_4:+39863564 | Msa0680700:CDS |
AAGGAATATTTGACAATGCC+AGG | 0.451920 | 4_4:-39865066 | None:intergenic |
CCTTTCCCTGGTTGGGTCGA+AGG | 0.461087 | 4_4:+39862607 | Msa0680700:CDS |
CTCATTGTGCAGTCTTATAG+TGG | 0.461451 | 4_4:-39857196 | None:intergenic |
ATCACGTGGGTTCATCTGTT+GGG | 0.467939 | 4_4:+39863452 | Msa0680700:CDS |
TTTGTAAAGACATATGTGTT+TGG | 0.467992 | 4_4:-39862493 | None:intergenic |
CTTACTCCTTCGACCCAACC+AGG | 0.485945 | 4_4:-39862613 | None:intergenic |
TATCACGTGGGTTCATCTGT+TGG | 0.489042 | 4_4:+39863451 | Msa0680700:CDS |
CTGGTTGGGTCGAAGGAGTA+AGG | 0.490574 | 4_4:+39862614 | Msa0680700:CDS |
AGTGAAACACCAAGTTGGTA+TGG | 0.494139 | 4_4:-39862171 | None:intergenic |
TGAGGAAAAGAGAGTAGTTG+AGG | 0.494819 | 4_4:+39862221 | Msa0680700:CDS |
GCATTCACCACCATATCAGC+AGG | 0.497234 | 4_4:-39863376 | None:intergenic |
GGATACTAAAATTGCCATGA+AGG | 0.498148 | 4_4:+39862284 | Msa0680700:CDS |
ACAAAGAACCTTTCCCTGGT+TGG | 0.498389 | 4_4:+39862599 | Msa0680700:CDS |
TTTCCTTCCTTGTCAAAACA+TGG | 0.503424 | 4_4:-39863532 | None:intergenic |
GAAAGGTTCTTTGTAAGTGC+TGG | 0.505594 | 4_4:-39862590 | None:intergenic |
GGTCCATACTGTGATGCGTT+TGG | 0.526662 | 4_4:+39864742 | Msa0680700:CDS |
AATGCTAGTGGGAACTATGA+AGG | 0.527078 | 4_4:+39862528 | Msa0680700:CDS |
TATGTCTTTACAAAGGCAAT+GGG | 0.529172 | 4_4:+39862502 | Msa0680700:CDS |
GGACTTGTTCAAATTGCTGA+AGG | 0.533109 | 4_4:+39859698 | Msa0680700:five_prime_UTR |
ACAAGAGGGAGCTACTGAAA+AGG | 0.533743 | 4_4:+39862263 | Msa0680700:CDS |
TGCCATGAAGGATTTGGGAA+TGG | 0.534798 | 4_4:+39862296 | Msa0680700:CDS |
GAAGGAAAAGCCATCAAAGT+TGG | 0.538912 | 4_4:+39863547 | Msa0680700:CDS |
CAAATAGCAGCAAGACTAAG+TGG | 0.540285 | 4_4:+39864970 | Msa0680700:CDS |
ATACTGCCAAATTGATCCAT+TGG | 0.540433 | 4_4:-39856913 | None:intergenic |
TGCAGATATGATGTAGCATT+GGG | 0.544440 | 4_4:+39860013 | Msa0680700:intron |
AAAGAGAGTTACTCTTTGCA+AGG | 0.545203 | 4_4:-39856987 | None:intergenic |
ACTTACAAAGAACCTTTCCC+TGG | 0.545331 | 4_4:+39862595 | Msa0680700:CDS |
TCAGAGCAAAGTTATATGGA+TGG | 0.546766 | 4_4:+39862470 | Msa0680700:intron |
ACGCCATTGAAGAACACATA+AGG | 0.551013 | 4_4:-39864779 | None:intergenic |
CCAAAACATTCTTATGCTCA+AGG | 0.551300 | 4_4:-39856945 | None:intergenic |
CTGCCAAATTGATCCATTGG+TGG | 0.553161 | 4_4:-39856910 | None:intergenic |
AAGACTAAGTGGAGTAGAGA+TGG | 0.553343 | 4_4:+39864981 | Msa0680700:CDS |
ATGCAGATATGATGTAGCAT+TGG | 0.559269 | 4_4:+39860012 | Msa0680700:intron |
AGAGAGATTAATAATATTGG+TGG | 0.562368 | 4_4:+39865126 | Msa0680700:three_prime_UTR |
ATTGAACATGCTTCAACAAG+AGG | 0.567383 | 4_4:+39862248 | Msa0680700:CDS |
GAATGCAATGCTAGTGGCCA+TGG | 0.569856 | 4_4:+39863393 | Msa0680700:CDS |
CTAAGACTCTCATATCTCAC+AGG | 0.569873 | 4_4:-39863478 | None:intergenic |
CAACAACTAACTTTGATGAA+AGG | 0.576712 | 4_4:+39859869 | Msa0680700:CDS |
TTTAAACTTCTCATTACGTG+TGG | 0.585784 | 4_4:+39865168 | Msa0680700:three_prime_UTR |
ATATGTCTTTACAAAGGCAA+TGG | 0.586877 | 4_4:+39862501 | Msa0680700:CDS |
GAGAGGAGGACTGATAGTAG+AGG | 0.600345 | 4_4:+39862146 | Msa0680700:CDS |
GGCAATGGGAGAAATGCTAG+TGG | 0.600756 | 4_4:+39862516 | Msa0680700:CDS |
CATTTAGTGAAACACCAAGT+TGG | 0.601093 | 4_4:-39862176 | None:intergenic |
CCTTCGACCCAACCAGGGAA+AGG | 0.605631 | 4_4:-39862607 | None:intergenic |
TTAAATGTAGCATACGTATG+TGG | 0.610970 | 4_4:+39862120 | Msa0680700:intron |
AAACTGCCTCTAAGTCTGCA+AGG | 0.617704 | 4_4:-39862808 | None:intergenic |
AAATTGCTGAAGGAAAATCA+TGG | 0.619305 | 4_4:+39859708 | Msa0680700:exon |
GTTTCACTAAATGGAGTGCA+AGG | 0.619534 | 4_4:+39862186 | Msa0680700:CDS |
AATACAAACCTGTTGATACG+TGG | 0.632502 | 4_4:-39860105 | None:intergenic |
TGTAGGTCTCACAATAACAA+TGG | 0.633502 | 4_4:-39862560 | None:intergenic |
TTACTCCTTCGACCCAACCA+GGG | 0.637146 | 4_4:-39862612 | None:intergenic |
CACTATAAGACTGCACAATG+AGG | 0.637631 | 4_4:+39857197 | Msa0680700:five_prime_UTR |
GCATACGTATGTGGAGAGAG+AGG | 0.637651 | 4_4:+39862129 | Msa0680700:intron |
TGATGATAGCATATATCACG+TGG | 0.642564 | 4_4:+39863438 | Msa0680700:CDS |
TTGAACATGCTTCAACAAGA+GGG | 0.645462 | 4_4:+39862249 | Msa0680700:CDS |
TGAAGGATTTGGGAATGGAG+AGG | 0.647659 | 4_4:+39862301 | Msa0680700:CDS |
GCAAGGACTAGACATTGATG+AGG | 0.656577 | 4_4:+39862203 | Msa0680700:CDS |
TTGATTTGCATGACTCACCA+TGG | 0.657844 | 4_4:-39863410 | None:intergenic |
GTAGAGGATCCATACCAACT+TGG | 0.659399 | 4_4:+39862162 | Msa0680700:CDS |
AACATGTACTTTGAAAATAG+CGG | 0.660337 | 4_4:-39864703 | None:intergenic |
TACGTATGTGGAGAGAGAGG+AGG | 0.668461 | 4_4:+39862132 | Msa0680700:CDS |
AAACACATATGTCTTTACAA+AGG | 0.671076 | 4_4:+39862495 | Msa0680700:CDS |
GCAGATCCCTGCTGATATGG+TGG | 0.671477 | 4_4:+39863369 | Msa0680700:intron |
AAAAGTGACTCTAGTGCCTG+GGG | 0.681356 | 4_4:+39859759 | Msa0680700:CDS |
GCAATGGGAGAAATGCTAGT+GGG | 0.681775 | 4_4:+39862517 | Msa0680700:CDS |
TGATATATGCTATCATCACA+AGG | 0.681859 | 4_4:-39863433 | None:intergenic |
CATTCACCACCATATCAGCA+GGG | 0.685104 | 4_4:-39863375 | None:intergenic |
GGTGGTGAATGCAATGCTAG+TGG | 0.712141 | 4_4:+39863387 | Msa0680700:CDS |
GATGATAGCATATATCACGT+GGG | 0.729775 | 4_4:+39863439 | Msa0680700:CDS |
ATACGTGGACAAGCACCCTG+AGG | 0.756197 | 4_4:-39860090 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATAAAATAT+TGG | + | chr4_4:39860184-39860203 | Msa0680700:intron | 0.0% |
!! | ATTAATTTATTATTATTAAT+AGG | + | chr4_4:39860696-39860715 | Msa0680700:intron | 0.0% |
!! | AAGTTTATTAAATTTGTATA+AGG | + | chr4_4:39857245-39857264 | Msa0680700:intron | 10.0% |
!!! | TATACACAAATAATTTTTTT+TGG | - | chr4_4:39857277-39857296 | None:intergenic | 10.0% |
!! | AAAAAAATTATTTGTGTATA+AGG | + | chr4_4:39857277-39857296 | Msa0680700:intron | 10.0% |
!!! | TAGATTTTTATGTAATTTTA+CGG | - | chr4_4:39857599-39857618 | None:intergenic | 10.0% |
!!! | TTTTAGTTAAATATGTTAAT+TGG | - | chr4_4:39858131-39858150 | None:intergenic | 10.0% |
!! | TGTATATTAATAGAAAAATA+CGG | - | chr4_4:39858276-39858295 | None:intergenic | 10.0% |
!! | AAATATCTTGAATAATATAT+TGG | - | chr4_4:39858379-39858398 | None:intergenic | 10.0% |
!!! | GTTATATTAGTATTTTTTTA+AGG | + | chr4_4:39860152-39860171 | Msa0680700:intron | 10.0% |
!! | TAAAAAATTTCTAAATTTGA+TGG | - | chr4_4:39860427-39860446 | None:intergenic | 10.0% |
!!! | TTTTGTATTTAAATTAGTTA+GGG | - | chr4_4:39860935-39860954 | None:intergenic | 10.0% |
!!! | GTCATTTTTTTTAATTTTTT+TGG | + | chr4_4:39860867-39860886 | Msa0680700:intron | 10.0% |
!!! | TTTTGTATTTAAATTAGTTA+GGG | + | chr4_4:39860935-39860954 | Msa0680700:intron | 10.0% |
!! | AAATTAAAGAAAATGTTAAA+AGG | + | chr4_4:39861229-39861248 | Msa0680700:intron | 10.0% |
!! | AATTAACTACAATAAAAAAT+TGG | - | chr4_4:39862651-39862670 | None:intergenic | 10.0% |
!! | AAAAAAACAAGAAAAAAATT+AGG | - | chr4_4:39864271-39864290 | None:intergenic | 10.0% |
!!! | TTATTATTCATTTGAAATTT+TGG | + | chr4_4:39864856-39864875 | Msa0680700:intron | 10.0% |
!! | AAATCACAAAAATATCTTAT+CGG | + | chr4_4:39857758-39857777 | Msa0680700:intron | 15.0% |
!!! | AACTTTTATGATGTAAATTT+AGG | + | chr4_4:39858064-39858083 | Msa0680700:intron | 15.0% |
!! | AATTCATGAAATTAATTATG+AGG | + | chr4_4:39858945-39858964 | Msa0680700:intron | 15.0% |
!! | TGAATGAAAATTATAATTAG+TGG | - | chr4_4:39859021-39859040 | None:intergenic | 15.0% |
!! | AAGTTATCTTAAATATAAGA+CGG | + | chr4_4:39859083-39859102 | Msa0680700:intron | 15.0% |
!!! | ATTTTCCAACTTTTTTTTTT+TGG | - | chr4_4:39859266-39859285 | None:intergenic | 15.0% |
!!! | AATTTGATGGATATAAATAT+AGG | - | chr4_4:39860414-39860433 | None:intergenic | 15.0% |
!! | TTTGTATTTAAATTAGTTAG+GGG | - | chr4_4:39860936-39860955 | None:intergenic | 15.0% |
!!! | GTTTTGTATTTAAATTAGTT+AGG | - | chr4_4:39860934-39860953 | None:intergenic | 15.0% |
!!! | GTTTTGTATTTAAATTAGTT+AGG | + | chr4_4:39860934-39860953 | Msa0680700:intron | 15.0% |
!! | TTTGTATTTAAATTAGTTAG+GGG | + | chr4_4:39860936-39860955 | Msa0680700:intron | 15.0% |
!!! | TGTGTTTGATAATATTAATA+AGG | - | chr4_4:39861011-39861030 | None:intergenic | 15.0% |
!!! | AAAATTTTGAATTTTCTCAA+TGG | + | chr4_4:39861168-39861187 | Msa0680700:intron | 15.0% |
!!! | TTTTTTTAAGGATTATATGT+AGG | + | chr4_4:39861450-39861469 | Msa0680700:intron | 15.0% |
!!! | TTTTTTAAGGATTATATGTA+GGG | + | chr4_4:39861451-39861470 | Msa0680700:intron | 15.0% |
!!! | TATTTTATTTTATTGGTTCT+AGG | - | chr4_4:39861877-39861896 | None:intergenic | 15.0% |
!! | AGAACCAATAAAATAAAATA+TGG | + | chr4_4:39861877-39861896 | Msa0680700:intron | 15.0% |
!! | TTAATTAATTTCAATAAGCA+TGG | - | chr4_4:39862082-39862101 | None:intergenic | 15.0% |
!!! | TTTGTTGTTAATTTGTTTAT+TGG | - | chr4_4:39862416-39862435 | None:intergenic | 15.0% |
!!! | TTTAGTTTATCTTCTTTAAA+AGG | + | chr4_4:39862850-39862869 | Msa0680700:intron | 15.0% |
!!! | ATATTTTATCCAAAGAATTT+GGG | + | chr4_4:39862992-39863011 | Msa0680700:intron | 15.0% |
!! | TAGGTATTAAAAAATTAACA+TGG | - | chr4_4:39863086-39863105 | None:intergenic | 15.0% |
!! | AATCTTCTTGAATTAAAAAA+AGG | + | chr4_4:39863249-39863268 | Msa0680700:intron | 15.0% |
!! | ATCTTCTTGAATTAAAAAAA+GGG | + | chr4_4:39863250-39863269 | Msa0680700:intron | 15.0% |
!! | ACATAACTAAATGTATAATT+AGG | + | chr4_4:39863305-39863324 | Msa0680700:intron | 15.0% |
!!! | TAATTAAATCAATTTTGTCT+AGG | - | chr4_4:39863331-39863350 | None:intergenic | 15.0% |
!! | AATTAATTATGTGTTAACTT+TGG | - | chr4_4:39863721-39863740 | None:intergenic | 15.0% |
!! | ATAATGTAAGTAGATAAAAT+TGG | + | chr4_4:39863895-39863914 | Msa0680700:intron | 15.0% |
!!! | TTTTCTCTTCTAAATTTTTT+TGG | + | chr4_4:39864410-39864429 | Msa0680700:intron | 15.0% |
!!! | TAATTAATTTGTGTTTTAAC+AGG | + | chr4_4:39864652-39864671 | Msa0680700:intron | 15.0% |
!!! | AATTAATTTGTGTTTTAACA+GGG | + | chr4_4:39864653-39864672 | Msa0680700:intron | 15.0% |
!! | AATTATTTGTGTATAAGGTA+CGG | + | chr4_4:39857282-39857301 | Msa0680700:intron | 20.0% |
!!! | ACTTAATAAATTGAGAGTTT+TGG | - | chr4_4:39857379-39857398 | None:intergenic | 20.0% |
!! | GTAATTAATGATGATTATGT+TGG | + | chr4_4:39857409-39857428 | Msa0680700:intron | 20.0% |
!!! | CATGCAATTTATTTTAGTAA+TGG | - | chr4_4:39857931-39857950 | None:intergenic | 20.0% |
!!! | CAAAATTGCATATTTTCAAA+TGG | - | chr4_4:39858237-39858256 | None:intergenic | 20.0% |
!!! | AATGACTACATTCAATTTTT+TGG | + | chr4_4:39858517-39858536 | Msa0680700:intron | 20.0% |
!!! | GAACAGTAACAATTTTTTAT+AGG | - | chr4_4:39858816-39858835 | None:intergenic | 20.0% |
!!! | CTTTTTGAGAATATCATAAT+TGG | + | chr4_4:39858986-39859005 | Msa0680700:intron | 20.0% |
!!! | TTTTCCTCAATAAAAAAAGT+TGG | + | chr4_4:39859113-39859132 | Msa0680700:intron | 20.0% |
!!! | CTTCAAATTGAAATTTTCTT+GGG | - | chr4_4:39859791-39859810 | None:intergenic | 20.0% |
!! | TTGTATTTAAATTAGTTAGG+GGG | - | chr4_4:39860937-39860956 | None:intergenic | 20.0% |
!! | AAATTAAAAAAAATGACACG+TGG | - | chr4_4:39860864-39860883 | None:intergenic | 20.0% |
!! | TTGTATTTAAATTAGTTAGG+GGG | + | chr4_4:39860937-39860956 | Msa0680700:intron | 20.0% |
!! | AAGAAAATGTTAAAAGGTAA+AGG | + | chr4_4:39861235-39861254 | Msa0680700:intron | 20.0% |
!!! | TTTTTAAGGATTATATGTAG+GGG | + | chr4_4:39861452-39861471 | Msa0680700:intron | 20.0% |
!!! | CCTACCATATTTTATTTTAT+TGG | - | chr4_4:39861884-39861903 | None:intergenic | 20.0% |
!! | CCAATAAAATAAAATATGGT+AGG | + | chr4_4:39861881-39861900 | Msa0680700:intron | 20.0% |
!! | ATTAAAGGAACACATAATAA+AGG | - | chr4_4:39862685-39862704 | None:intergenic | 20.0% |
!! | ATAAAAAGTGATCAAAATTG+TGG | - | chr4_4:39862928-39862947 | None:intergenic | 20.0% |
!!! | GATATTTTATCCAAAGAATT+TGG | + | chr4_4:39862991-39863010 | Msa0680700:intron | 20.0% |
!!! | TTCTTTCTAATACACAATTT+TGG | - | chr4_4:39863277-39863296 | None:intergenic | 20.0% |
!! | AGAAATTGAATAACCTTTAA+AGG | - | chr4_4:39863637-39863656 | None:intergenic | 20.0% |
!!! | TAATTCTTTTGTTGTTATGT+AGG | + | chr4_4:39864094-39864113 | Msa0680700:intron | 20.0% |
!!! | ATTAATTTGTGTTTTAACAG+GGG | + | chr4_4:39864654-39864673 | Msa0680700:intron | 20.0% |
!! | GTGTATATTTGTAGTTTTTG+TGG | + | chr4_4:39857101-39857120 | Msa0680700:intron | 25.0% |
! | AGATAAAGTTTCTTCACATT+TGG | - | chr4_4:39857147-39857166 | None:intergenic | 25.0% |
! | AGGTATGTATAGACATTAAA+AGG | + | chr4_4:39857217-39857236 | Msa0680700:intron | 25.0% |
! | ATGAGAGGAGTAAAAAAAAA+AGG | - | chr4_4:39857542-39857561 | None:intergenic | 25.0% |
!! | GAAAACTCTTAACATTCTTT+TGG | + | chr4_4:39857571-39857590 | Msa0680700:intron | 25.0% |
! | TAAGATTAGTACACAAAAGA+CGG | - | chr4_4:39858016-39858035 | None:intergenic | 25.0% |
! | AAGAAGAAAAAAAACCCTAA+AGG | + | chr4_4:39858094-39858113 | Msa0680700:intron | 25.0% |
! | TGTAGCAGTCTATTTATTAT+AGG | + | chr4_4:39858491-39858510 | Msa0680700:intron | 25.0% |
!! | TACAACTTTTATGACAACTT+TGG | + | chr4_4:39858600-39858619 | Msa0680700:intron | 25.0% |
! | GTCAAAAAGTTGTTAGAAAA+TGG | + | chr4_4:39858710-39858729 | Msa0680700:intron | 25.0% |
!!! | CTCTAATAACCTAACTTTTT+TGG | + | chr4_4:39858868-39858887 | Msa0680700:intron | 25.0% |
! | ATGAATTAGATTAGACAAGT+GGG | - | chr4_4:39858932-39858951 | None:intergenic | 25.0% |
! | GGATAATGCATATATATGTA+GGG | + | chr4_4:39859167-39859186 | Msa0680700:intron | 25.0% |
! | GATAATGCATATATATGTAG+GGG | + | chr4_4:39859168-39859187 | Msa0680700:intron | 25.0% |
! | CTTGACCAAAAAAAAAAAGT+TGG | + | chr4_4:39859258-39859277 | Msa0680700:intron | 25.0% |
!!! | AAAATTTTTCAAGACACATG+TGG | + | chr4_4:39859312-39859331 | Msa0680700:intron | 25.0% |
! | ATCCTAAAGTATATTTGTGA+TGG | + | chr4_4:39859521-39859540 | Msa0680700:intron | 25.0% |
!! | CCTTCAAATTGAAATTTTCT+TGG | - | chr4_4:39859792-39859811 | None:intergenic | 25.0% |
! | CCAAGAAAATTTCAATTTGA+AGG | + | chr4_4:39859789-39859808 | Msa0680700:CDS | 25.0% |
! | CAAAAATTGTATTAACCTCA+GGG | + | chr4_4:39860075-39860094 | Msa0680700:CDS | 25.0% |
! | TTTGAAAAGCTCTCATTTAT+CGG | + | chr4_4:39860230-39860249 | Msa0680700:intron | 25.0% |
! | AAAGATGCATATTGGAATTT+AGG | - | chr4_4:39860289-39860308 | None:intergenic | 25.0% |
!!! | AGATGAATTTTTCAATTACG+TGG | + | chr4_4:39860450-39860469 | Msa0680700:intron | 25.0% |
! | TGCATCTTAAGATAGTTATT+AGG | + | chr4_4:39860511-39860530 | Msa0680700:intron | 25.0% |
!!! | TTTTAATTTTTTTGGCCTTG+CGG | + | chr4_4:39860875-39860894 | Msa0680700:intron | 25.0% |
!!! | TATTGATTCTTTGACAGTTT+TGG | - | chr4_4:39860903-39860922 | None:intergenic | 25.0% |
! | TGTCAAAGAATCAATACTTA+AGG | + | chr4_4:39860907-39860926 | Msa0680700:intron | 25.0% |
! | GTCAAAGAATCAATACTTAA+GGG | + | chr4_4:39860908-39860927 | Msa0680700:intron | 25.0% |
! | TCAAAGAATCAATACTTAAG+GGG | + | chr4_4:39860909-39860928 | Msa0680700:intron | 25.0% |
!!! | TTTCTCAATGGATTGATTTT+TGG | + | chr4_4:39861180-39861199 | Msa0680700:intron | 25.0% |
!!! | TTCTCAATGGATTGATTTTT+GGG | + | chr4_4:39861181-39861200 | Msa0680700:intron | 25.0% |
! | ATAAGAAGTGAATGAATTGA+AGG | + | chr4_4:39861300-39861319 | Msa0680700:intron | 25.0% |
! | TAAGAAGTGAATGAATTGAA+GGG | + | chr4_4:39861301-39861320 | Msa0680700:intron | 25.0% |
!!! | GTTCATAGTGCATTTTTTTA+AGG | + | chr4_4:39861438-39861457 | Msa0680700:intron | 25.0% |
! | TTGCAATTTATCTTCATTCA+GGG | - | chr4_4:39861525-39861544 | None:intergenic | 25.0% |
! | TTTGCAATTTATCTTCATTC+AGG | - | chr4_4:39861526-39861545 | None:intergenic | 25.0% |
!!! | TACATGAATTTTAATAGACC+AGG | + | chr4_4:39861750-39861769 | Msa0680700:intron | 25.0% |
!!! | ACATGAATTTTAATAGACCA+GGG | + | chr4_4:39861751-39861770 | Msa0680700:intron | 25.0% |
! | CATTTAGTATCAATCAATGT+AGG | + | chr4_4:39862052-39862071 | Msa0680700:intron | 25.0% |
!! | ATTTTCAGAGCAAAGTTATA+TGG | + | chr4_4:39862466-39862485 | Msa0680700:intron | 25.0% |
! | TTTGTAAAGACATATGTGTT+TGG | - | chr4_4:39862496-39862515 | None:intergenic | 25.0% |
! | AAACACATATGTCTTTACAA+AGG | + | chr4_4:39862495-39862514 | Msa0680700:CDS | 25.0% |
! | TTAATTGTTGCATATGGTAA+AGG | + | chr4_4:39862770-39862789 | Msa0680700:CDS | 25.0% |
!!! | AGTTGATATTATTACCCTTT+TGG | + | chr4_4:39862882-39862901 | Msa0680700:intron | 25.0% |
! | CAAAAATATGAAGACCAAAA+GGG | - | chr4_4:39862899-39862918 | None:intergenic | 25.0% |
! | TCAAAAATATGAAGACCAAA+AGG | - | chr4_4:39862900-39862919 | None:intergenic | 25.0% |
! | AAAACTTTACCCAAATTCTT+TGG | - | chr4_4:39863004-39863023 | None:intergenic | 25.0% |
!!! | TTGGGTAAAGTTTTGATAAT+AGG | + | chr4_4:39863010-39863029 | Msa0680700:intron | 25.0% |
!!! | GTTTTCTGTTAGTTTATTGT+AGG | - | chr4_4:39863064-39863083 | None:intergenic | 25.0% |
! | AATGATTATGACATATAGGT+AGG | - | chr4_4:39863164-39863183 | None:intergenic | 25.0% |
! | GACAAATGATTATGACATAT+AGG | - | chr4_4:39863168-39863187 | None:intergenic | 25.0% |
! | TGGAAAAATAGAAGTAATTG+AGG | - | chr4_4:39863663-39863682 | None:intergenic | 25.0% |
! | TTAATAGATAACGAGTACAA+CGG | - | chr4_4:39863815-39863834 | None:intergenic | 25.0% |
! | TGTAAGTAGATAAAATTGGT+AGG | + | chr4_4:39863899-39863918 | Msa0680700:intron | 25.0% |
! | GTAAGTAGATAAAATTGGTA+GGG | + | chr4_4:39863900-39863919 | Msa0680700:intron | 25.0% |
!!! | TCTCTTCTAAATTTTTTTGG+AGG | + | chr4_4:39864413-39864432 | Msa0680700:intron | 25.0% |
! | AATTTAATATGCTAAGATCC+AGG | - | chr4_4:39864489-39864508 | None:intergenic | 25.0% |
!! | ATAAGAGTATAATCATGTTG+TGG | - | chr4_4:39864601-39864620 | None:intergenic | 25.0% |
!! | AACATGTACTTTGAAAATAG+CGG | - | chr4_4:39864706-39864725 | None:intergenic | 25.0% |
! | ACCAATATTATTAATCTCTC+TGG | - | chr4_4:39865127-39865146 | None:intergenic | 25.0% |
! | AGAGAGATTAATAATATTGG+TGG | + | chr4_4:39865126-39865145 | Msa0680700:three_prime_UTR | 25.0% |
!! | TACTTTAACTTTTCCACCAA+TGG | + | chr4_4:39856897-39856916 | Msa0680700:five_prime_UTR | 30.0% |
!!! | CATAAGAATGTTTTGGTACT+TGG | + | chr4_4:39856952-39856971 | Msa0680700:five_prime_UTR | 30.0% |
!! | TTATCTTCTTTTGAGAGCTA+CGG | + | chr4_4:39857161-39857180 | Msa0680700:five_prime_UTR | 30.0% |
TTATGTTGGTATCTTAAGTG+TGG | + | chr4_4:39857423-39857442 | Msa0680700:intron | 30.0% | |
GTACTATAAGTGAGTAAAGA+TGG | + | chr4_4:39857482-39857501 | Msa0680700:intron | 30.0% | |
! | GAATGTTAAGAGTTTTCTCT+TGG | - | chr4_4:39857568-39857587 | None:intergenic | 30.0% |
TCACAAAAATATCTTATCGG+TGG | + | chr4_4:39857761-39857780 | Msa0680700:intron | 30.0% | |
TTCAAATGGATCATCTATTG+CGG | - | chr4_4:39858223-39858242 | None:intergenic | 30.0% | |
AAATACGGTCAAAGTAAGTT+AGG | - | chr4_4:39858261-39858280 | None:intergenic | 30.0% | |
! | ATGCATTGACATGCTTAATA+AGG | + | chr4_4:39858411-39858430 | Msa0680700:intron | 30.0% |
TTGTGTCAAGTATTATGAGA+TGG | + | chr4_4:39858438-39858457 | Msa0680700:intron | 30.0% | |
GTGATATTTGTACAACTCTT+TGG | + | chr4_4:39858577-39858596 | Msa0680700:intron | 30.0% | |
!! | TTGGTTTTCTCTCTTTTGAT+TGG | + | chr4_4:39858619-39858638 | Msa0680700:intron | 30.0% |
! | TAAGTGTTGCCAAAAAAGTT+AGG | - | chr4_4:39858880-39858899 | None:intergenic | 30.0% |
CATGAATTAGATTAGACAAG+TGG | - | chr4_4:39858933-39858952 | None:intergenic | 30.0% | |
AGAATATCATAATTGGTGAG+TGG | + | chr4_4:39858993-39859012 | Msa0680700:intron | 30.0% | |
!!! | GCTTCCAACTTTTTTTATTG+AGG | - | chr4_4:39859120-39859139 | None:intergenic | 30.0% |
GGGATAATGCATATATATGT+AGG | + | chr4_4:39859166-39859185 | Msa0680700:intron | 30.0% | |
CACCATCACAAATATACTTT+AGG | - | chr4_4:39859526-39859545 | None:intergenic | 30.0% | |
! | TCATATGTAGATTTTGCGAA+AGG | + | chr4_4:39859677-39859696 | Msa0680700:intron | 30.0% |
AAATTGCTGAAGGAAAATCA+TGG | + | chr4_4:39859708-39859727 | Msa0680700:exon | 30.0% | |
GTATAACTCTTGAAGTAGAT+TGG | - | chr4_4:39859818-39859837 | None:intergenic | 30.0% | |
CAACAACTAACTTTGATGAA+AGG | + | chr4_4:39859869-39859888 | Msa0680700:CDS | 30.0% | |
GCATTGGGTTTAAATACATT+TGG | + | chr4_4:39860028-39860047 | Msa0680700:CDS | 30.0% | |
! | CCTGAGGTTAATACAATTTT+TGG | - | chr4_4:39860077-39860096 | None:intergenic | 30.0% |
CCAAAAATTGTATTAACCTC+AGG | + | chr4_4:39860074-39860093 | Msa0680700:CDS | 30.0% | |
! | AGAGCTTTTCAAACAATCTT+GGG | - | chr4_4:39860223-39860242 | None:intergenic | 30.0% |
! | ATCGGAAAGATAGTTTTTGA+TGG | + | chr4_4:39860248-39860267 | Msa0680700:intron | 30.0% |
! | ATAGTGGAAAAGATGCATAT+TGG | - | chr4_4:39860297-39860316 | None:intergenic | 30.0% |
! | TCTTTTCCACTATAATCTCT+CGG | + | chr4_4:39860304-39860323 | Msa0680700:intron | 30.0% |
!! | TTTTTGAGCTTGAGCAATAT+AGG | + | chr4_4:39860364-39860383 | Msa0680700:intron | 30.0% |
ACTTTACAATAGTCCTTATG+CGG | + | chr4_4:39860648-39860667 | Msa0680700:intron | 30.0% | |
TCAAAAAATGAAACCGCATA+AGG | - | chr4_4:39860664-39860683 | None:intergenic | 30.0% | |
TGCCAAAGATTCAATACTTA+GGG | - | chr4_4:39860800-39860819 | None:intergenic | 30.0% | |
! | TATTGAATCTTTGGCAGTTT+TGG | + | chr4_4:39860804-39860823 | Msa0680700:intron | 30.0% |
!!! | TTTAATTTTTTTGGCCTTGC+GGG | + | chr4_4:39860876-39860895 | Msa0680700:intron | 30.0% |
ATCATCATGCAAGTTAATTG+CGG | - | chr4_4:39861094-39861113 | None:intergenic | 30.0% | |
GGTGCAACATTATATAATCA+GGG | + | chr4_4:39861414-39861433 | Msa0680700:intron | 30.0% | |
GTGCAACATTATATAATCAG+GGG | + | chr4_4:39861415-39861434 | Msa0680700:intron | 30.0% | |
TGCAACATTATATAATCAGG+GGG | + | chr4_4:39861416-39861435 | Msa0680700:intron | 30.0% | |
ACTAACAAAGTGTACATTCA+GGG | + | chr4_4:39861646-39861665 | Msa0680700:intron | 30.0% | |
TTTGCAATTTATCTGCATTC+AGG | + | chr4_4:39861674-39861693 | Msa0680700:intron | 30.0% | |
TTGCAATTTATCTGCATTCA+GGG | + | chr4_4:39861675-39861694 | Msa0680700:intron | 30.0% | |
!! | CATGAATTTTAATAGACCAG+GGG | + | chr4_4:39861752-39861771 | Msa0680700:intron | 30.0% |
!! | ATGAATTTTAATAGACCAGG+GGG | + | chr4_4:39861753-39861772 | Msa0680700:intron | 30.0% |
!! | CTATTTTTCGCAATTCAATG+TGG | + | chr4_4:39861831-39861850 | Msa0680700:intron | 30.0% |
CTTGTCTATTACTCCATTTA+AGG | - | chr4_4:39861972-39861991 | None:intergenic | 30.0% | |
GAATACCACAAAAGTTTAGT+TGG | + | chr4_4:39862013-39862032 | Msa0680700:intron | 30.0% | |
!! | TAGTTGGTGAACTTAATATG+TGG | + | chr4_4:39862029-39862048 | Msa0680700:intron | 30.0% |
TTAAATGTAGCATACGTATG+TGG | + | chr4_4:39862120-39862139 | Msa0680700:intron | 30.0% | |
TAAAATTGCCATGAAGGATT+TGG | + | chr4_4:39862290-39862309 | Msa0680700:CDS | 30.0% | |
AAAATTGCCATGAAGGATTT+GGG | + | chr4_4:39862291-39862310 | Msa0680700:CDS | 30.0% | |
ATATGTCTTTACAAAGGCAA+TGG | + | chr4_4:39862501-39862520 | Msa0680700:CDS | 30.0% | |
TATGTCTTTACAAAGGCAAT+GGG | + | chr4_4:39862502-39862521 | Msa0680700:CDS | 30.0% | |
TGCAACAATTAAACTGTCTA+TGG | - | chr4_4:39862762-39862781 | None:intergenic | 30.0% | |
GACAGTTTAATTGTTGCATA+TGG | + | chr4_4:39862764-39862783 | Msa0680700:CDS | 30.0% | |
! | ATATTTTACTTGCACGTCAT+TGG | + | chr4_4:39863194-39863213 | Msa0680700:intron | 30.0% |
!!! | AACGTCACACTTTTTTGAAA+TGG | + | chr4_4:39863220-39863239 | Msa0680700:intron | 30.0% |
!!! | ACGTCACACTTTTTTGAAAT+GGG | + | chr4_4:39863221-39863240 | Msa0680700:intron | 30.0% |
TGATATATGCTATCATCACA+AGG | - | chr4_4:39863436-39863455 | None:intergenic | 30.0% | |
! | CTACAGCTTCAGATATTTTA+CGG | + | chr4_4:39863504-39863523 | Msa0680700:CDS | 30.0% |
AAGTCTAAATGTTGCATGAA+TGG | - | chr4_4:39863683-39863702 | None:intergenic | 30.0% | |
TTATGTGTTAACTTTGGACA+TGG | - | chr4_4:39863715-39863734 | None:intergenic | 30.0% | |
GTTTAATTGCGATACATTGT+CGG | - | chr4_4:39863776-39863795 | None:intergenic | 30.0% | |
ATGTATCGCAATTAAACTCT+AGG | + | chr4_4:39863779-39863798 | Msa0680700:intron | 30.0% | |
TGTATCGCAATTAAACTCTA+GGG | + | chr4_4:39863780-39863799 | Msa0680700:intron | 30.0% | |
TAATAGATAACGAGTACAAC+GGG | - | chr4_4:39863814-39863833 | None:intergenic | 30.0% | |
! | TACATTATAAGTCCGTTTTG+CGG | - | chr4_4:39863883-39863902 | None:intergenic | 30.0% |
TTGATATTGCTGTAATGCTA+CGG | - | chr4_4:39864052-39864071 | None:intergenic | 30.0% | |
GCATTACAGCAATATCAATT+TGG | + | chr4_4:39864054-39864073 | Msa0680700:intron | 30.0% | |
ACAACAAAAGAATTACCACT+GGG | - | chr4_4:39864089-39864108 | None:intergenic | 30.0% | |
AACAACAAAAGAATTACCAC+TGG | - | chr4_4:39864090-39864109 | None:intergenic | 30.0% | |
!!! | TTCTTTTGTTGTTATGTAGG+AGG | + | chr4_4:39864097-39864116 | Msa0680700:intron | 30.0% |
!!! | TGTATTTTTTCCAGCATGAT+AGG | + | chr4_4:39864233-39864252 | Msa0680700:intron | 30.0% |
!!! | ATGTTTTGATATCAGCAGAA+AGG | + | chr4_4:39864721-39864740 | Msa0680700:CDS | 30.0% |
TTCATGAACATTCATATTCC+TGG | + | chr4_4:39865048-39865067 | Msa0680700:CDS | 30.0% | |
CAGAATATAGTTTCACTTGA+AGG | - | chr4_4:39865088-39865107 | None:intergenic | 30.0% | |
GCCAGAGAGATTAATAATAT+TGG | + | chr4_4:39865123-39865142 | Msa0680700:three_prime_UTR | 30.0% | |
TTTAAACTTCTCATTACGTG+TGG | + | chr4_4:39865168-39865187 | Msa0680700:three_prime_UTR | 30.0% | |
TTTCCACCAATGGATCAATT+TGG | + | chr4_4:39856907-39856926 | Msa0680700:five_prime_UTR | 35.0% | |
ATACTGCCAAATTGATCCAT+TGG | - | chr4_4:39856916-39856935 | None:intergenic | 35.0% | |
CCAAAACATTCTTATGCTCA+AGG | - | chr4_4:39856948-39856967 | None:intergenic | 35.0% | |
! | CCTTGAGCATAAGAATGTTT+TGG | + | chr4_4:39856945-39856964 | Msa0680700:five_prime_UTR | 35.0% |
AAAGAGAGTTACTCTTTGCA+AGG | - | chr4_4:39856990-39857009 | None:intergenic | 35.0% | |
TATTTGTGTATAAGGTACGG+TGG | + | chr4_4:39857285-39857304 | Msa0680700:intron | 35.0% | |
AAACACAAGGACAAAAGAGA+GGG | - | chr4_4:39857329-39857348 | None:intergenic | 35.0% | |
ATGTCTCATGAAGAAACACA+AGG | - | chr4_4:39857342-39857361 | None:intergenic | 35.0% | |
TCCAAATCTACTGTTGTTGT+CGG | + | chr4_4:39857790-39857809 | Msa0680700:intron | 35.0% | |
TCATGCATATGCTCTTTCTT+TGG | + | chr4_4:39857848-39857867 | Msa0680700:intron | 35.0% | |
!! | GTACACAAAAGACGGATTTT+TGG | - | chr4_4:39858008-39858027 | None:intergenic | 35.0% |
!! | TGGTGTCTTTTTCACCTTTA+GGG | - | chr4_4:39858111-39858130 | None:intergenic | 35.0% |
!! | TTGGTGTCTTTTTCACCTTT+AGG | - | chr4_4:39858112-39858131 | None:intergenic | 35.0% |
TGTCAAGTATTATGAGATGG+AGG | + | chr4_4:39858441-39858460 | Msa0680700:intron | 35.0% | |
GTCAAGTATTATGAGATGGA+GGG | + | chr4_4:39858442-39858461 | Msa0680700:intron | 35.0% | |
! | ATGGAGGGAGTAACATTTTA+AGG | + | chr4_4:39858457-39858476 | Msa0680700:intron | 35.0% |
!!! | CCGTTTAAACTGCTACTTTT+GGG | - | chr4_4:39858844-39858863 | None:intergenic | 35.0% |
CCCAAAAGTAGCAGTTTAAA+CGG | + | chr4_4:39858841-39858860 | Msa0680700:intron | 35.0% | |
!!! | ACCGTTTAAACTGCTACTTT+TGG | - | chr4_4:39858845-39858864 | None:intergenic | 35.0% |
AAAGTAGCAGTTTAAACGGT+TGG | + | chr4_4:39858845-39858864 | Msa0680700:intron | 35.0% | |
ATGCATATATATGTAGGGGT+CGG | + | chr4_4:39859172-39859191 | Msa0680700:intron | 35.0% | |
ACCTTAAAGGTGAATAAGTG+GGG | - | chr4_4:39859215-39859234 | None:intergenic | 35.0% | |
CACCTTAAAGGTGAATAAGT+GGG | - | chr4_4:39859216-39859235 | None:intergenic | 35.0% | |
TCACCTTAAAGGTGAATAAG+TGG | - | chr4_4:39859217-39859236 | None:intergenic | 35.0% | |
GCTAGAGAAATTCACCTTAA+AGG | - | chr4_4:39859228-39859247 | None:intergenic | 35.0% | |
ATGCAGATATGATGTAGCAT+TGG | + | chr4_4:39860012-39860031 | Msa0680700:intron | 35.0% | |
TGCAGATATGATGTAGCATT+GGG | + | chr4_4:39860013-39860032 | Msa0680700:intron | 35.0% | |
AATACAAACCTGTTGATACG+TGG | - | chr4_4:39860108-39860127 | None:intergenic | 35.0% | |
! | GAGAGCTTTTCAAACAATCT+TGG | - | chr4_4:39860224-39860243 | None:intergenic | 35.0% |
TAGAATCCGAGAGATTATAG+TGG | - | chr4_4:39860313-39860332 | None:intergenic | 35.0% | |
ACTATAATCTCTCGGATTCT+AGG | + | chr4_4:39860312-39860331 | Msa0680700:intron | 35.0% | |
CTACAAGTGTACAAGAAAAG+TGG | + | chr4_4:39860487-39860506 | Msa0680700:intron | 35.0% | |
ATAGTTATTAGGTCCATCAG+TGG | + | chr4_4:39860522-39860541 | Msa0680700:intron | 35.0% | |
CCAAAGATTCAATACTTAGG+GGG | - | chr4_4:39860798-39860817 | None:intergenic | 35.0% | |
GCCAAAGATTCAATACTTAG+GGG | - | chr4_4:39860799-39860818 | None:intergenic | 35.0% | |
CTGCCAAAGATTCAATACTT+AGG | - | chr4_4:39860801-39860820 | None:intergenic | 35.0% | |
!!! | TTAATTTTTTTGGCCTTGCG+GGG | + | chr4_4:39860877-39860896 | Msa0680700:intron | 35.0% |
GCATGATGATCACTTTATCT+TGG | + | chr4_4:39861104-39861123 | Msa0680700:intron | 35.0% | |
! | GTAAAGGAAAGTACATGAAG+TGG | + | chr4_4:39861251-39861270 | Msa0680700:intron | 35.0% |
AGAGTGAAAGGATGCAAATT+CGG | + | chr4_4:39861364-39861383 | Msa0680700:intron | 35.0% | |
GGGTGCAACATTATATAATC+AGG | + | chr4_4:39861413-39861432 | Msa0680700:intron | 35.0% | |
ACTAATGGAGTCTACATTCA+GGG | + | chr4_4:39861582-39861601 | Msa0680700:intron | 35.0% | |
ACTAACGAAGTTTGCATTCA+GGG | + | chr4_4:39861614-39861633 | Msa0680700:intron | 35.0% | |
GACTAACAAAGTGTACATTC+AGG | + | chr4_4:39861645-39861664 | Msa0680700:intron | 35.0% | |
TTATGGTCATATGTTGAGCT+TGG | - | chr4_4:39861935-39861954 | None:intergenic | 35.0% | |
AGGTATGTGTTGCAGTATTA+TGG | - | chr4_4:39861952-39861971 | None:intergenic | 35.0% | |
ACTGCAACACATACCTTAAA+TGG | + | chr4_4:39861956-39861975 | Msa0680700:intron | 35.0% | |
! | GTTCACCAACTAAACTTTTG+TGG | - | chr4_4:39862021-39862040 | None:intergenic | 35.0% |
CATTTAGTGAAACACCAAGT+TGG | - | chr4_4:39862179-39862198 | None:intergenic | 35.0% | |
!! | CAACTTGGTGTTTCACTAAA+TGG | + | chr4_4:39862177-39862196 | Msa0680700:CDS | 35.0% |
ATTGAACATGCTTCAACAAG+AGG | + | chr4_4:39862248-39862267 | Msa0680700:CDS | 35.0% | |
TTGAACATGCTTCAACAAGA+GGG | + | chr4_4:39862249-39862268 | Msa0680700:CDS | 35.0% | |
GGATACTAAAATTGCCATGA+AGG | + | chr4_4:39862284-39862303 | Msa0680700:CDS | 35.0% | |
TCAGAGCAAAGTTATATGGA+TGG | + | chr4_4:39862470-39862489 | Msa0680700:intron | 35.0% | |
TGTAGGTCTCACAATAACAA+TGG | - | chr4_4:39862563-39862582 | None:intergenic | 35.0% | |
!! | TAAGTGCTGGTAATGATTGT+AGG | - | chr4_4:39862580-39862599 | None:intergenic | 35.0% |
TAGGTGGATGGGTATATTAT+AGG | - | chr4_4:39863145-39863164 | None:intergenic | 35.0% | |
GATTATGACATATAGGTAGG+TGG | - | chr4_4:39863161-39863180 | None:intergenic | 35.0% | |
!!! | CGTCACACTTTTTTGAAATG+GGG | + | chr4_4:39863222-39863241 | Msa0680700:intron | 35.0% |
TGATGATAGCATATATCACG+TGG | + | chr4_4:39863438-39863457 | Msa0680700:CDS | 35.0% | |
GATGATAGCATATATCACGT+GGG | + | chr4_4:39863439-39863458 | Msa0680700:CDS | 35.0% | |
!!! | AAACCATGTTTTGACAAGGA+AGG | + | chr4_4:39863529-39863548 | Msa0680700:CDS | 35.0% |
TTTCCTTCCTTGTCAAAACA+TGG | - | chr4_4:39863535-39863554 | None:intergenic | 35.0% | |
TGTAACTTTGCCAACTTTGA+TGG | - | chr4_4:39863560-39863579 | None:intergenic | 35.0% | |
AGTTGGCAAAGTTACAGTAT+TGG | + | chr4_4:39863564-39863583 | Msa0680700:CDS | 35.0% | |
TCGTTACTTGCTTCCTTTAA+AGG | + | chr4_4:39863621-39863640 | Msa0680700:CDS | 35.0% | |
!! | GCAATTAAACTCTAGGGTTT+GGG | + | chr4_4:39863786-39863805 | Msa0680700:intron | 35.0% |
CTAATAGTATACCCGCAAAA+CGG | + | chr4_4:39863868-39863887 | Msa0680700:intron | 35.0% | |
! | ACATTATAAGTCCGTTTTGC+GGG | - | chr4_4:39863882-39863901 | None:intergenic | 35.0% |
! | AAATTGGTAGGGTTTTTACC+TGG | + | chr4_4:39863911-39863930 | Msa0680700:intron | 35.0% |
!! | TATTTTGGGCCCCTAAAATT+GGG | - | chr4_4:39863988-39864007 | None:intergenic | 35.0% |
!! | ATATTTTGGGCCCCTAAAAT+TGG | - | chr4_4:39863989-39864008 | None:intergenic | 35.0% |
TGATATTGCTGTAATGCTAC+GGG | - | chr4_4:39864051-39864070 | None:intergenic | 35.0% | |
CAACAAAAGAATTACCACTG+GGG | - | chr4_4:39864088-39864107 | None:intergenic | 35.0% | |
! | AGCATGATAGGATCTCTTTT+GGG | + | chr4_4:39864245-39864264 | Msa0680700:intron | 35.0% |
! | CCTAATTTTACTAAGAGAGC+CGG | + | chr4_4:39864436-39864455 | Msa0680700:intron | 35.0% |
! | CTAATTTTACTAAGAGAGCC+GGG | + | chr4_4:39864437-39864456 | Msa0680700:intron | 35.0% |
TTGACCCAAAAATGATTGAC+TGG | + | chr4_4:39865016-39865035 | Msa0680700:CDS | 35.0% | |
TGACCCAAAAATGATTGACT+GGG | + | chr4_4:39865017-39865036 | Msa0680700:CDS | 35.0% | |
AAGGAATATTTGACAATGCC+AGG | - | chr4_4:39865069-39865088 | None:intergenic | 35.0% | |
! | CTCATTGTGCAGTCTTATAG+TGG | - | chr4_4:39857199-39857218 | None:intergenic | 40.0% |
CACTATAAGACTGCACAATG+AGG | + | chr4_4:39857197-39857216 | Msa0680700:five_prime_UTR | 40.0% | |
GAAACACAAGGACAAAAGAG+AGG | - | chr4_4:39857330-39857349 | None:intergenic | 40.0% | |
GTGTGGTAAATATCTCACGT+TGG | + | chr4_4:39857440-39857459 | Msa0680700:intron | 40.0% | |
GGTAAATATCTCACGTTGGA+TGG | + | chr4_4:39857444-39857463 | Msa0680700:intron | 40.0% | |
! | GTTTTCTCTTGGATCATGAG+AGG | - | chr4_4:39857557-39857576 | None:intergenic | 40.0% |
ACCGACAACAACAGTAGATT+TGG | - | chr4_4:39857794-39857813 | None:intergenic | 40.0% | |
CTCACCAATGTCATGTAGAA+CGG | + | chr4_4:39857821-39857840 | Msa0680700:intron | 40.0% | |
ATGCTCTTTCTTTGGCAACA+TGG | + | chr4_4:39857856-39857875 | Msa0680700:intron | 40.0% | |
ATGGATCATCTATTGCGGAA+CGG | - | chr4_4:39858218-39858237 | None:intergenic | 40.0% | |
TGCATATATATGTAGGGGTC+GGG | + | chr4_4:39859173-39859192 | Msa0680700:intron | 40.0% | |
ACCCCACTTATTCACCTTTA+AGG | + | chr4_4:39859211-39859230 | Msa0680700:intron | 40.0% | |
!! | TTTTTGGTCAAGTAGCCTAG+CGG | - | chr4_4:39859250-39859269 | None:intergenic | 40.0% |
TGTGGCTGAAAAATAGGAAG+TGG | - | chr4_4:39859365-39859384 | None:intergenic | 40.0% | |
CTATTTGCCACAATTCAAGG+AGG | - | chr4_4:39859388-39859407 | None:intergenic | 40.0% | |
GCACTATTTGCCACAATTCA+AGG | - | chr4_4:39859391-39859410 | None:intergenic | 40.0% | |
GGCAAATAGTGCATTGTGAT+TGG | + | chr4_4:39859399-39859418 | Msa0680700:intron | 40.0% | |
GAGGTGGGTGTGAAAATTAA+TGG | - | chr4_4:39859573-39859592 | None:intergenic | 40.0% | |
! | GGACTTGTTCAAATTGCTGA+AGG | + | chr4_4:39859698-39859717 | Msa0680700:five_prime_UTR | 40.0% |
AAAAAGTGACTCTAGTGCCT+GGG | + | chr4_4:39859758-39859777 | Msa0680700:CDS | 40.0% | |
!!! | CTCGGATTCTAGGTTTTGTT+AGG | + | chr4_4:39860322-39860341 | Msa0680700:intron | 40.0% |
!!! | GCAAGTTTTGGAAAGATAGG+GGG | - | chr4_4:39860968-39860987 | None:intergenic | 40.0% |
!!! | CGCAAGTTTTGGAAAGATAG+GGG | - | chr4_4:39860967-39860986 | None:intergenic | 40.0% |
!!! | CCGCAAGTTTTGGAAAGATA+GGG | - | chr4_4:39860966-39860985 | None:intergenic | 40.0% |
CCCTATCTTTCCAAAACTTG+CGG | + | chr4_4:39860738-39860757 | Msa0680700:intron | 40.0% | |
!!! | ACCGCAAGTTTTGGAAAGAT+AGG | - | chr4_4:39860965-39860984 | None:intergenic | 40.0% |
!! | CCCCCTAAGTATTGAATCTT+TGG | + | chr4_4:39860795-39860814 | Msa0680700:intron | 40.0% |
!!! | ACCGCAAGTTTTGGAAAGAT+AGG | + | chr4_4:39860965-39860984 | Msa0680700:intron | 40.0% |
CCCTATCTTTCCAAAACTTG+CGG | - | chr4_4:39860738-39860757 | None:intergenic | 40.0% | |
!!! | CCGCAAGTTTTGGAAAGATA+GGG | + | chr4_4:39860966-39860985 | Msa0680700:intron | 40.0% |
!!! | CGCAAGTTTTGGAAAGATAG+GGG | + | chr4_4:39860967-39860986 | Msa0680700:intron | 40.0% |
!!! | GCAAGTTTTGGAAAGATAGG+GGG | + | chr4_4:39860968-39860987 | Msa0680700:intron | 40.0% |
GTGCATATAGTGAGAGTGAA+AGG | + | chr4_4:39861352-39861371 | Msa0680700:intron | 40.0% | |
GCAGTGTTTGATTGAATGCA+GGG | + | chr4_4:39861392-39861411 | Msa0680700:intron | 40.0% | |
CAGTGTTTGATTGAATGCAG+GGG | + | chr4_4:39861393-39861412 | Msa0680700:intron | 40.0% | |
! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr4_4:39861478-39861497 | Msa0680700:intron | 40.0% |
! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr4_4:39861479-39861498 | Msa0680700:intron | 40.0% |
ATTGCAAAATAGTCCCTGCA+TGG | + | chr4_4:39861538-39861557 | Msa0680700:intron | 40.0% | |
TCAGGGACTAAAGTGACTAA+TGG | + | chr4_4:39861567-39861586 | Msa0680700:intron | 40.0% | |
GACTAATGGAGTCTACATTC+AGG | + | chr4_4:39861581-39861600 | Msa0680700:intron | 40.0% | |
GACTAACGAAGTTTGCATTC+AGG | + | chr4_4:39861613-39861632 | Msa0680700:intron | 40.0% | |
! | AGTCACTTTAGTCCCTGAAT+CGG | - | chr4_4:39861479-39861498 | None:intergenic | 40.0% |
GCGAAAAATAGTGTCAGAAG+TGG | - | chr4_4:39861822-39861841 | None:intergenic | 40.0% | |
GGTTAATCTTACGTGCTAGT+AGG | - | chr4_4:39861907-39861926 | None:intergenic | 40.0% | |
! | CATATGTTGAGCTTGGTTCT+AGG | - | chr4_4:39861928-39861947 | None:intergenic | 40.0% |
!! | AGTGAAACACCAAGTTGGTA+TGG | - | chr4_4:39862174-39862193 | None:intergenic | 40.0% |
GTTTCACTAAATGGAGTGCA+AGG | + | chr4_4:39862186-39862205 | Msa0680700:CDS | 40.0% | |
TGAGGAAAAGAGAGTAGTTG+AGG | + | chr4_4:39862221-39862240 | Msa0680700:CDS | 40.0% | |
AATGCTAGTGGGAACTATGA+AGG | + | chr4_4:39862528-39862547 | Msa0680700:CDS | 40.0% | |
GAAAGGTTCTTTGTAAGTGC+TGG | - | chr4_4:39862593-39862612 | None:intergenic | 40.0% | |
ACTTACAAAGAACCTTTCCC+TGG | + | chr4_4:39862595-39862614 | Msa0680700:CDS | 40.0% | |
! | CTTAGAGGCAGTTTTTGATG+TGG | + | chr4_4:39862817-39862836 | Msa0680700:CDS | 40.0% |
! | CAGTTTTTGATGTGGTGAGA+AGG | + | chr4_4:39862825-39862844 | Msa0680700:intron | 40.0% |
TGACATATAGGTAGGTGGAT+GGG | - | chr4_4:39863156-39863175 | None:intergenic | 40.0% | |
ATGACATATAGGTAGGTGGA+TGG | - | chr4_4:39863157-39863176 | None:intergenic | 40.0% | |
!! | TTGATTTGCATGACTCACCA+TGG | - | chr4_4:39863413-39863432 | None:intergenic | 40.0% |
CTAAGACTCTCATATCTCAC+AGG | - | chr4_4:39863481-39863500 | None:intergenic | 40.0% | |
!!! | GGCAAAACCATGTTTTGACA+AGG | + | chr4_4:39863525-39863544 | Msa0680700:CDS | 40.0% |
GAAGGAAAAGCCATCAAAGT+TGG | + | chr4_4:39863547-39863566 | Msa0680700:CDS | 40.0% | |
!! | CGCAATTAAACTCTAGGGTT+TGG | + | chr4_4:39863785-39863804 | Msa0680700:intron | 40.0% |
! | TGCAAATAGCTCTATAGAGC+TGG | + | chr4_4:39863957-39863976 | Msa0680700:intron | 40.0% |
! | GCAAATAGCTCTATAGAGCT+GGG | + | chr4_4:39863958-39863977 | Msa0680700:intron | 40.0% |
! | ATTTTGGGCCCCTAAAATTG+GGG | - | chr4_4:39863987-39864006 | None:intergenic | 40.0% |
CAAAAGAGATCCTATCATGC+TGG | - | chr4_4:39864246-39864265 | None:intergenic | 40.0% | |
! | CAGCATGATAGGATCTCTTT+TGG | + | chr4_4:39864244-39864263 | Msa0680700:intron | 40.0% |
CCGGCTCTCTTAGTAAAATT+AGG | - | chr4_4:39864439-39864458 | None:intergenic | 40.0% | |
AATATGCTAAGATCCAGGCA+AGG | - | chr4_4:39864484-39864503 | None:intergenic | 40.0% | |
TACCGTATGAATTGTAGCTG+CGG | + | chr4_4:39864523-39864542 | Msa0680700:intron | 40.0% | |
TTCCGCAGCTACAATTCATA+CGG | - | chr4_4:39864528-39864547 | None:intergenic | 40.0% | |
TGCGTTTGGTTGAACTTTAC+AGG | + | chr4_4:39864756-39864775 | Msa0680700:CDS | 40.0% | |
! | AGGCCTTATGTGTTCTTCAA+TGG | + | chr4_4:39864776-39864795 | Msa0680700:CDS | 40.0% |
ACGCCATTGAAGAACACATA+AGG | - | chr4_4:39864782-39864801 | None:intergenic | 40.0% | |
CAAATAGCAGCAAGACTAAG+TGG | + | chr4_4:39864970-39864989 | Msa0680700:CDS | 40.0% | |
AAGACTAAGTGGAGTAGAGA+TGG | + | chr4_4:39864981-39865000 | Msa0680700:CDS | 40.0% | |
!! | CCTCCCAGTCAATCATTTTT+GGG | - | chr4_4:39865023-39865042 | None:intergenic | 40.0% |
! | TCCTCCCAGTCAATCATTTT+TGG | - | chr4_4:39865024-39865043 | None:intergenic | 40.0% |
CTGCCAAATTGATCCATTGG+TGG | - | chr4_4:39856913-39856932 | None:intergenic | 45.0% | |
GTGACAAACGTTACGTCTCT+TGG | + | chr4_4:39857721-39857740 | Msa0680700:intron | 45.0% | |
CGTTCTACATGACATTGGTG+AGG | - | chr4_4:39857823-39857842 | None:intergenic | 45.0% | |
ACCAATGTCATGTAGAACGG+TGG | + | chr4_4:39857824-39857843 | Msa0680700:intron | 45.0% | |
TCCACCGTTCTACATGACAT+TGG | - | chr4_4:39857828-39857847 | None:intergenic | 45.0% | |
ATCATCTATTGCGGAACGGA+GGG | - | chr4_4:39858214-39858233 | None:intergenic | 45.0% | |
TACCAAGTGAGCTATCCTCA+CGG | - | chr4_4:39859145-39859164 | None:intergenic | 45.0% | |
TGAGGATAGCTCACTTGGTA+AGG | + | chr4_4:39859145-39859164 | Msa0680700:intron | 45.0% | |
GAGGATAGCTCACTTGGTAA+GGG | + | chr4_4:39859146-39859165 | Msa0680700:intron | 45.0% | |
GCATATATATGTAGGGGTCG+GGG | + | chr4_4:39859174-39859193 | Msa0680700:intron | 45.0% | |
! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr4_4:39859371-39859390 | None:intergenic | 45.0% |
GAAAAAGTGACTCTAGTGCC+TGG | + | chr4_4:39859757-39859776 | Msa0680700:CDS | 45.0% | |
AAAAGTGACTCTAGTGCCTG+GGG | + | chr4_4:39859759-39859778 | Msa0680700:CDS | 45.0% | |
! | TTTTCTTGGGAAATGTCCCC+AGG | - | chr4_4:39859778-39859797 | None:intergenic | 45.0% |
GAATTGAAGGGTCAGAACAG+TGG | + | chr4_4:39861313-39861332 | Msa0680700:intron | 45.0% | |
!! | AAAGGATGCAAATTCGGTGC+TGG | + | chr4_4:39861370-39861389 | Msa0680700:intron | 45.0% |
GGCAGTGTTTGATTGAATGC+AGG | + | chr4_4:39861391-39861410 | Msa0680700:intron | 45.0% | |
TCCCTGCATGGTCAATTTCA+GGG | + | chr4_4:39861550-39861569 | Msa0680700:intron | 45.0% | |
TCCCTGAAATTGACCATGCA+GGG | - | chr4_4:39861554-39861573 | None:intergenic | 45.0% | |
CTTTAGTCCCTGAATCGGAA+GGG | - | chr4_4:39861716-39861735 | None:intergenic | 45.0% | |
ACTTTAGTCCCTGAATCGGA+AGG | - | chr4_4:39861717-39861736 | None:intergenic | 45.0% | |
GTAGAGGATCCATACCAACT+TGG | + | chr4_4:39862162-39862181 | Msa0680700:CDS | 45.0% | |
GCAAGGACTAGACATTGATG+AGG | + | chr4_4:39862203-39862222 | Msa0680700:CDS | 45.0% | |
ACAAGAGGGAGCTACTGAAA+AGG | + | chr4_4:39862263-39862282 | Msa0680700:CDS | 45.0% | |
TGCCATGAAGGATTTGGGAA+TGG | + | chr4_4:39862296-39862315 | Msa0680700:CDS | 45.0% | |
CTCCATTCCCAAATCCTTCA+TGG | - | chr4_4:39862301-39862320 | None:intergenic | 45.0% | |
TGAAGGATTTGGGAATGGAG+AGG | + | chr4_4:39862301-39862320 | Msa0680700:CDS | 45.0% | |
GCAATGGGAGAAATGCTAGT+GGG | + | chr4_4:39862517-39862536 | Msa0680700:CDS | 45.0% | |
ACAAAGAACCTTTCCCTGGT+TGG | + | chr4_4:39862599-39862618 | Msa0680700:CDS | 45.0% | |
CAAAGAACCTTTCCCTGGTT+GGG | + | chr4_4:39862600-39862619 | Msa0680700:CDS | 45.0% | |
ATGCTTCCTTGCAGACTTAG+AGG | + | chr4_4:39862802-39862821 | Msa0680700:CDS | 45.0% | |
AAACTGCCTCTAAGTCTGCA+AGG | - | chr4_4:39862811-39862830 | None:intergenic | 45.0% | |
CATTCACCACCATATCAGCA+GGG | - | chr4_4:39863378-39863397 | None:intergenic | 45.0% | |
TATCACGTGGGTTCATCTGT+TGG | + | chr4_4:39863451-39863470 | Msa0680700:CDS | 45.0% | |
ATCACGTGGGTTCATCTGTT+GGG | + | chr4_4:39863452-39863471 | Msa0680700:CDS | 45.0% | |
CAACCAAACGCATCACAGTA+TGG | - | chr4_4:39864748-39864767 | None:intergenic | 45.0% | |
CCCAAAAATGATTGACTGGG+AGG | + | chr4_4:39865020-39865039 | Msa0680700:CDS | 45.0% | |
!! | TAATAATTAAAGAAAATTAA+AGG | - | chr4_4:39862700-39862719 | None:intergenic | 5.0% |
!!! | AAATCATATTAATATTTTTT+AGG | - | chr4_4:39863105-39863124 | None:intergenic | 5.0% |
!!! | ACATAAAAAAAAAATATTTT+GGG | - | chr4_4:39864002-39864021 | None:intergenic | 5.0% |
!!! | TACATAAAAAAAAAATATTT+TGG | - | chr4_4:39864003-39864022 | None:intergenic | 5.0% |
!!! | GTTTTGGTACTTGGTGCTGC+TGG | + | chr4_4:39856961-39856980 | Msa0680700:five_prime_UTR | 50.0% |
AAGATGGTGTCCACCCTTGT+CGG | + | chr4_4:39857498-39857517 | Msa0680700:intron | 50.0% | |
TACCGAGAGTAACCCGACAA+GGG | - | chr4_4:39857514-39857533 | None:intergenic | 50.0% | |
ATACCGAGAGTAACCCGACA+AGG | - | chr4_4:39857515-39857534 | None:intergenic | 50.0% | |
GATCATCTATTGCGGAACGG+AGG | - | chr4_4:39858215-39858234 | None:intergenic | 50.0% | |
ACCAAGTGAGCTATCCTCAC+GGG | - | chr4_4:39859144-39859163 | None:intergenic | 50.0% | |
! | AGGTGAATAAGTGGGGTGTC+CGG | - | chr4_4:39859208-39859227 | None:intergenic | 50.0% |
GGTGAATTTCTCTAGCCGCT+AGG | + | chr4_4:39859232-39859251 | Msa0680700:intron | 50.0% | |
AGCCACACCTCCTTGAATTG+TGG | + | chr4_4:39859378-39859397 | Msa0680700:intron | 50.0% | |
TGCCACAATTCAAGGAGGTG+TGG | - | chr4_4:39859383-39859402 | None:intergenic | 50.0% | |
! | ATTTTCACACCCACCTCACG+TGG | + | chr4_4:39859576-39859595 | Msa0680700:intron | 50.0% |
! | TTTTCACACCCACCTCACGT+GGG | + | chr4_4:39859577-39859596 | Msa0680700:intron | 50.0% |
GTGCTTGTCCACGTATCAAC+AGG | + | chr4_4:39860097-39860116 | Msa0680700:CDS | 50.0% | |
GACACGTGGCACCTCATTTA+GGG | - | chr4_4:39860850-39860869 | None:intergenic | 50.0% | |
TGACACGTGGCACCTCATTT+AGG | - | chr4_4:39860851-39860870 | None:intergenic | 50.0% | |
AGGGTCAGAACAGTGGTTGT+AGG | + | chr4_4:39861320-39861339 | Msa0680700:intron | 50.0% | |
CTTTAGTCCCTGAATGGGAG+AGG | + | chr4_4:39861484-39861503 | Msa0680700:intron | 50.0% | |
GACGAATCCTCTCCCATTCA+GGG | - | chr4_4:39861494-39861513 | None:intergenic | 50.0% | |
TGACGAATCCTCTCCCATTC+AGG | - | chr4_4:39861495-39861514 | None:intergenic | 50.0% | |
GTCCCTGCATGGTCAATTTC+AGG | + | chr4_4:39861549-39861568 | Msa0680700:intron | 50.0% | |
GTCCCTGAAATTGACCATGC+AGG | - | chr4_4:39861555-39861574 | None:intergenic | 50.0% | |
TGACGAATCCCTTCCGATTC+AGG | + | chr4_4:39861705-39861724 | Msa0680700:intron | 50.0% | |
GACGAATCCCTTCCGATTCA+GGG | + | chr4_4:39861706-39861725 | Msa0680700:intron | 50.0% | |
AGTGTCAGAAGTGGACCCAT+GGG | - | chr4_4:39861813-39861832 | None:intergenic | 50.0% | |
TAGTGTCAGAAGTGGACCCA+TGG | - | chr4_4:39861814-39861833 | None:intergenic | 50.0% | |
GCATACGTATGTGGAGAGAG+AGG | + | chr4_4:39862129-39862148 | Msa0680700:intron | 50.0% | |
TACGTATGTGGAGAGAGAGG+AGG | + | chr4_4:39862132-39862151 | Msa0680700:CDS | 50.0% | |
GAGAGGAGGACTGATAGTAG+AGG | + | chr4_4:39862146-39862165 | Msa0680700:CDS | 50.0% | |
GGCAATGGGAGAAATGCTAG+TGG | + | chr4_4:39862516-39862535 | Msa0680700:CDS | 50.0% | |
TTACTCCTTCGACCCAACCA+GGG | - | chr4_4:39862615-39862634 | None:intergenic | 50.0% | |
GAAGCAGATCCCTGCTGATA+TGG | + | chr4_4:39863366-39863385 | Msa0680700:intron | 50.0% | |
GCATTCACCACCATATCAGC+AGG | - | chr4_4:39863379-39863398 | None:intergenic | 50.0% | |
GGTGGTGAATGCAATGCTAG+TGG | + | chr4_4:39863387-39863406 | Msa0680700:CDS | 50.0% | |
GAATGCAATGCTAGTGGCCA+TGG | + | chr4_4:39863393-39863412 | Msa0680700:CDS | 50.0% | |
ATTTGGAAAACGTGCCCCAG+TGG | + | chr4_4:39864071-39864090 | Msa0680700:intron | 50.0% | |
! | TCCCTATGAAATTGGTGGCC+CGG | - | chr4_4:39864458-39864477 | None:intergenic | 50.0% |
GGCCACCAATTTCATAGGGA+CGG | + | chr4_4:39864458-39864477 | Msa0680700:intron | 50.0% | |
CAAGGCCGTCCCTATGAAAT+TGG | - | chr4_4:39864466-39864485 | None:intergenic | 50.0% | |
GGTCCATACTGTGATGCGTT+TGG | + | chr4_4:39864742-39864761 | Msa0680700:CDS | 50.0% | |
AGATGGTGTCCACCCTTGTC+GGG | + | chr4_4:39857499-39857518 | Msa0680700:intron | 55.0% | |
CACCCTTGTCGGGTTACTCT+CGG | + | chr4_4:39857509-39857528 | Msa0680700:intron | 55.0% | |
AAAAGTTGGAAGCCCCCGTG+AGG | + | chr4_4:39859127-39859146 | Msa0680700:intron | 55.0% | |
CAAGTGAGCTATCCTCACGG+GGG | - | chr4_4:39859142-39859161 | None:intergenic | 55.0% | |
CCAAGTGAGCTATCCTCACG+GGG | - | chr4_4:39859143-39859162 | None:intergenic | 55.0% | |
! | GTGAATAAGTGGGGTGTCCG+GGG | - | chr4_4:39859206-39859225 | None:intergenic | 55.0% |
! | GGTGAATAAGTGGGGTGTCC+GGG | - | chr4_4:39859207-39859226 | None:intergenic | 55.0% |
TTTCACACCCACCTCACGTG+GGG | + | chr4_4:39859578-39859597 | Msa0680700:intron | 55.0% | |
ATACGTGGACAAGCACCCTG+AGG | - | chr4_4:39860093-39860112 | None:intergenic | 55.0% | |
AAGTTTGAACCCCCTGCTCC+AGG | - | chr4_4:39860560-39860579 | None:intergenic | 55.0% | |
! | GGGGCTGTAACCGCAAGTTT+TGG | - | chr4_4:39860956-39860975 | None:intergenic | 55.0% |
CTGACGTGGCACCCTAAATG+AGG | + | chr4_4:39860836-39860855 | Msa0680700:intron | 55.0% | |
!! | TTGACAGTTTTGGCCCCGCA+AGG | - | chr4_4:39860893-39860912 | None:intergenic | 55.0% |
! | GGGGCTGTAACCGCAAGTTT+TGG | + | chr4_4:39860956-39860975 | Msa0680700:intron | 55.0% |
CTTACTCCTTCGACCCAACC+AGG | - | chr4_4:39862616-39862635 | None:intergenic | 55.0% | |
CTGGTTGGGTCGAAGGAGTA+AGG | + | chr4_4:39862614-39862633 | Msa0680700:CDS | 55.0% | |
GCAGATCCCTGCTGATATGG+TGG | + | chr4_4:39863369-39863388 | Msa0680700:intron | 55.0% | |
GAGCTATTTGCACCTCCCCA+GGG | - | chr4_4:39863949-39863968 | None:intergenic | 55.0% | |
AGAGCTATTTGCACCTCCCC+AGG | - | chr4_4:39863950-39863969 | None:intergenic | 55.0% | |
! | AGCTGGGCCTCCCCAATTTT+AGG | + | chr4_4:39863974-39863993 | Msa0680700:intron | 55.0% |
! | GCTGGGCCTCCCCAATTTTA+GGG | + | chr4_4:39863975-39863994 | Msa0680700:intron | 55.0% |
! | CTGGGCCTCCCCAATTTTAG+GGG | + | chr4_4:39863976-39863995 | Msa0680700:intron | 55.0% |
TTGGGCCCCTAAAATTGGGG+AGG | - | chr4_4:39863984-39864003 | None:intergenic | 55.0% | |
AGCCGGGCCACCAATTTCAT+AGG | + | chr4_4:39864453-39864472 | Msa0680700:intron | 55.0% | |
GCCGGGCCACCAATTTCATA+GGG | + | chr4_4:39864454-39864473 | Msa0680700:intron | 55.0% | |
GGCCGTCCCTATGAAATTGG+TGG | - | chr4_4:39864463-39864482 | None:intergenic | 55.0% | |
CGAGAGTAACCCGACAAGGG+TGG | - | chr4_4:39857511-39857530 | None:intergenic | 60.0% | |
CCCCGTGAGGATAGCTCACT+TGG | + | chr4_4:39859140-39859159 | Msa0680700:intron | 60.0% | |
GTTCCTGGCAACGCCACTGA+TGG | - | chr4_4:39860538-39860557 | None:intergenic | 60.0% | |
GTTGCCAGGAACCTGGAGCA+GGG | + | chr4_4:39860546-39860565 | Msa0680700:intron | 60.0% | |
TTGCCAGGAACCTGGAGCAG+GGG | + | chr4_4:39860547-39860566 | Msa0680700:intron | 60.0% | |
! | TAGGGTGCCACGTCAGCGTT+GGG | - | chr4_4:39860832-39860851 | None:intergenic | 60.0% |
! | TTAGGGTGCCACGTCAGCGT+TGG | - | chr4_4:39860833-39860852 | None:intergenic | 60.0% |
GTCAGAAGTGGACCCATGGG+CGG | - | chr4_4:39861810-39861829 | None:intergenic | 60.0% | |
CCTTCGACCCAACCAGGGAA+AGG | - | chr4_4:39862610-39862629 | None:intergenic | 60.0% | |
CCTTTCCCTGGTTGGGTCGA+AGG | + | chr4_4:39862607-39862626 | Msa0680700:CDS | 60.0% | |
CTGGATCCAGAGCTGTCCCT+GGG | + | chr4_4:39863930-39863949 | Msa0680700:intron | 60.0% | |
TGGATCCAGAGCTGTCCCTG+GGG | + | chr4_4:39863931-39863950 | Msa0680700:intron | 60.0% | |
TTCATAGGGACGGCCTTGCC+TGG | + | chr4_4:39864468-39864487 | Msa0680700:intron | 60.0% | |
CAAGCCTCCCCACGTGAGGT+GGG | - | chr4_4:39859588-39859607 | None:intergenic | 65.0% | |
TAGCCAAGCCTCCCCACGTG+AGG | - | chr4_4:39859592-39859611 | None:intergenic | 65.0% | |
GGTCCATCAGTGGCGTTGCC+AGG | + | chr4_4:39860532-39860551 | Msa0680700:intron | 65.0% | |
CAGTGGCGTTGCCAGGAACC+TGG | + | chr4_4:39860539-39860558 | Msa0680700:intron | 65.0% | |
CGTTGCCAGGAACCTGGAGC+AGG | + | chr4_4:39860545-39860564 | Msa0680700:intron | 65.0% | |
TGCCAGGAACCTGGAGCAGG+GGG | + | chr4_4:39860548-39860567 | Msa0680700:intron | 65.0% | |
AACCCCCTGCTCCAGGTTCC+TGG | - | chr4_4:39860553-39860572 | None:intergenic | 65.0% | |
TTTGGCCCCCAACGCTGACG+TGG | + | chr4_4:39860822-39860841 | Msa0680700:intron | 65.0% | |
! | AGGGTGCCACGTCAGCGTTG+GGG | - | chr4_4:39860831-39860850 | None:intergenic | 65.0% |
GGGGGTTCAACTGAACCCCC+TGG | - | chr4_4:39861771-39861790 | None:intergenic | 65.0% | |
!! | CCAGGGACAGCTCTGGATCC+AGG | - | chr4_4:39863932-39863951 | None:intergenic | 65.0% |
CCTGGATCCAGAGCTGTCCC+TGG | + | chr4_4:39863929-39863948 | Msa0680700:intron | 65.0% | |
ATCCAGAGCTGTCCCTGGGG+AGG | + | chr4_4:39863934-39863953 | Msa0680700:intron | 65.0% | |
AGGGGTCGGGGTTCGAACCC+CGG | + | chr4_4:39859186-39859205 | Msa0680700:intron | 70.0% | |
CACACCCACCTCACGTGGGG+AGG | + | chr4_4:39859581-39859600 | Msa0680700:intron | 70.0% | |
CCAAGCCTCCCCACGTGAGG+TGG | - | chr4_4:39859589-39859608 | None:intergenic | 70.0% | |
CCACCTCACGTGGGGAGGCT+TGG | + | chr4_4:39859586-39859605 | Msa0680700:intron | 70.0% | |
! | GGGTGCCACGTCAGCGTTGG+GGG | - | chr4_4:39860830-39860849 | None:intergenic | 70.0% |
CACCTCCCCAGGGACAGCTC+TGG | - | chr4_4:39863939-39863958 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 39856800 | 39865249 | 39856800 | ID=Msa0680700;Name=Msa0680700 |
chr4_4 | mRNA | 39856800 | 39865249 | 39856800 | ID=Msa0680700-mRNA-1;Parent=Msa0680700;Name=Msa0680700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=342|1|1|1|0.88|0.9|10|154|417 |
chr4_4 | exon | 39856800 | 39856997 | 39856800 | ID=Msa0680700-mRNA-1:exon:9478;Parent=Msa0680700-mRNA-1 |
chr4_4 | exon | 39857115 | 39857218 | 39857115 | ID=Msa0680700-mRNA-1:exon:9479;Parent=Msa0680700-mRNA-1 |
chr4_4 | exon | 39859687 | 39859890 | 39859687 | ID=Msa0680700-mRNA-1:exon:9480;Parent=Msa0680700-mRNA-1 |
chr4_4 | exon | 39860018 | 39860118 | 39860018 | ID=Msa0680700-mRNA-1:exon:9481;Parent=Msa0680700-mRNA-1 |
chr4_4 | exon | 39862130 | 39862322 | 39862130 | ID=Msa0680700-mRNA-1:exon:9482;Parent=Msa0680700-mRNA-1 |
chr4_4 | exon | 39862474 | 39862635 | 39862474 | ID=Msa0680700-mRNA-1:exon:9483;Parent=Msa0680700-mRNA-1 |
chr4_4 | exon | 39862757 | 39862838 | 39862757 | ID=Msa0680700-mRNA-1:exon:9484;Parent=Msa0680700-mRNA-1 |
chr4_4 | exon | 39863373 | 39863642 | 39863373 | ID=Msa0680700-mRNA-1:exon:9485;Parent=Msa0680700-mRNA-1 |
chr4_4 | exon | 39864674 | 39864801 | 39864674 | ID=Msa0680700-mRNA-1:exon:9486;Parent=Msa0680700-mRNA-1 |
chr4_4 | exon | 39864942 | 39865249 | 39864942 | ID=Msa0680700-mRNA-1:exon:9487;Parent=Msa0680700-mRNA-1 |
chr4_4 | five_prime_UTR | 39856800 | 39856997 | 39856800 | ID=Msa0680700-mRNA-1:five_prime_utr;Parent=Msa0680700-mRNA-1 |
chr4_4 | five_prime_UTR | 39857115 | 39857218 | 39857115 | ID=Msa0680700-mRNA-1:five_prime_utr;Parent=Msa0680700-mRNA-1 |
chr4_4 | five_prime_UTR | 39859687 | 39859726 | 39859687 | ID=Msa0680700-mRNA-1:five_prime_utr;Parent=Msa0680700-mRNA-1 |
chr4_4 | CDS | 39859727 | 39859890 | 39859727 | ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1 |
chr4_4 | CDS | 39860018 | 39860118 | 39860018 | ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1 |
chr4_4 | CDS | 39862130 | 39862322 | 39862130 | ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1 |
chr4_4 | CDS | 39862474 | 39862635 | 39862474 | ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1 |
chr4_4 | CDS | 39862757 | 39862838 | 39862757 | ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1 |
chr4_4 | CDS | 39863373 | 39863642 | 39863373 | ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1 |
chr4_4 | CDS | 39864674 | 39864801 | 39864674 | ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1 |
chr4_4 | CDS | 39864942 | 39865095 | 39864942 | ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1 |
chr4_4 | three_prime_UTR | 39865096 | 39865249 | 39865096 | ID=Msa0680700-mRNA-1:three_prime_utr;Parent=Msa0680700-mRNA-1 |
Gene Sequence |
Protein sequence |