AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0680700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680700 MtrunA17_Chr4g0026701 98.293 410 7 0 8 417 83 492 0.0 843
Msa0680700 MtrunA17_Chr2g0321181 71.463 410 117 0 8 417 82 491 0.0 641
Msa0680700 MtrunA17_Chr2g0321201 69.268 410 125 1 8 417 84 492 0.0 620
Msa0680700 MtrunA17_Chr4g0026691 68.537 410 129 0 8 417 82 491 0.0 611
Msa0680700 MtrunA17_Chr4g0026711 47.101 414 215 2 8 417 82 495 1.11e-134 395
Msa0680700 MtrunA17_Chr4g0026771 45.542 415 220 4 8 417 79 492 4.97e-129 381
Msa0680700 MtrunA17_Chr6g0465391 45.521 413 188 5 8 417 82 460 8.21e-121 358
Msa0680700 MtrunA17_Chr1g0176054 38.928 429 237 7 3 417 191 608 2.33e-96 301
Msa0680700 MtrunA17_Chr5g0419501 37.188 320 144 4 8 324 82 347 1.15e-61 203
Msa0680700 MtrunA17_Chr5g0431251 49.231 130 66 0 106 235 1 130 7.63e-43 147
Msa0680700 MtrunA17_Chr4g0026911 42.077 183 102 4 235 414 3 184 9.44e-42 145
Msa0680700 MtrunA17_Chr5g0431281 40.323 186 105 3 235 417 28 210 1.00e-40 144
Msa0680700 MtrunA17_Chr4g0026891 45.333 150 78 2 8 153 79 228 4.00e-38 139
Msa0680700 MtrunA17_Chr6g0465381 44.898 147 79 1 169 313 1 147 3.05e-31 117
Msa0680700 MtrunA17_Chr4g0026901 66.667 57 19 0 153 209 16 72 4.29e-23 92.4
Msa0680700 MtrunA17_Chr5g0419491 44.681 94 52 0 324 417 7 100 8.55e-22 89.4
Msa0680700 MtrunA17_Chr5g0431271 56.716 67 29 0 169 235 1 67 1.06e-21 90.1
Msa0680700 MtrunA17_Chr5g0431261 36.667 90 57 0 235 324 3 92 5.78e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0680700 AT4G33790.1 58.477 407 168 1 10 416 88 493 0.0 517
Msa0680700 AT4G33790.2 59.055 381 155 1 36 416 1 380 6.25e-174 491
Msa0680700 AT3G44540.1 53.771 411 189 1 8 417 82 492 2.86e-163 468
Msa0680700 AT5G22500.1 51.456 412 197 2 7 417 81 490 2.19e-159 458
Msa0680700 AT3G44550.1 50.361 415 200 3 8 417 82 495 2.03e-147 428
Msa0680700 AT3G44550.2 51.163 387 183 3 36 417 1 386 6.66e-140 405
Msa0680700 AT3G44560.1 49.398 415 204 3 8 417 82 495 2.96e-137 402
Msa0680700 AT5G22420.4 51.233 365 173 4 41 404 6 366 3.40e-131 382
Msa0680700 AT5G22500.2 54.088 318 144 1 7 324 81 396 5.64e-128 375
Msa0680700 AT5G22420.1 46.552 406 211 5 1 404 1 402 1.20e-124 367
Msa0680700 AT5G22420.3 50.568 352 169 4 54 404 3 350 1.08e-123 363
Msa0680700 AT5G22420.6 50.568 352 169 4 54 404 3 350 1.08e-123 363
Msa0680700 AT3G44560.3 50.689 363 176 2 8 368 82 443 6.73e-122 362
Msa0680700 AT3G44560.2 52.336 321 150 2 8 326 82 401 7.55e-112 335
Msa0680700 AT5G22420.5 49.051 316 156 4 90 404 4 315 9.50e-105 313
Msa0680700 AT3G44540.2 59.130 230 94 0 8 237 82 311 8.70e-99 297
Msa0680700 AT3G44540.3 59.130 230 94 0 8 237 82 311 8.70e-99 297
Msa0680700 AT5G22420.2 48.333 300 150 4 106 404 1 296 3.21e-97 293
Msa0680700 AT5G22420.7 48.333 300 150 4 106 404 1 296 3.21e-97 293
Msa0680700 AT3G11980.1 38.498 426 242 8 4 417 196 613 1.19e-95 299
Msa0680700 AT3G56700.2 34.314 408 247 7 7 413 152 539 5.88e-75 243
Msa0680700 AT3G56700.1 32.353 408 234 8 7 413 152 518 1.15e-63 213

Find 100 sgRNAs with CRISPR-Local

Find 507 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTACTTGCTTCCTTTAA+AGG 0.098124 4_4:+39863621 Msa0680700:CDS
AGAAATTGAATAACCTTTAA+AGG 0.182202 4_4:-39863634 None:intergenic
CAACTTGGTGTTTCACTAAA+TGG 0.185971 4_4:+39862177 Msa0680700:CDS
TAAAATTGCCATGAAGGATT+TGG 0.220004 4_4:+39862290 Msa0680700:CDS
TGCGTTTGGTTGAACTTTAC+AGG 0.238251 4_4:+39864756 Msa0680700:CDS
TTTCTCTCTATATATATATT+TGG 0.267188 4_4:+39856788 None:intergenic
ATGCTTCCTTGCAGACTTAG+AGG 0.301520 4_4:+39862802 Msa0680700:CDS
TTCATGAACATTCATATTCC+TGG 0.304377 4_4:+39865048 Msa0680700:CDS
TGTAACTTTGCCAACTTTGA+TGG 0.304948 4_4:-39863557 None:intergenic
CCAAGAAAATTTCAATTTGA+AGG 0.310827 4_4:+39859789 Msa0680700:CDS
GCCAGAGAGATTAATAATAT+TGG 0.312899 4_4:+39865123 Msa0680700:three_prime_UTR
TTTCCACCAATGGATCAATT+TGG 0.317863 4_4:+39856907 Msa0680700:five_prime_UTR
GACAGTTTAATTGTTGCATA+TGG 0.320149 4_4:+39862764 Msa0680700:CDS
TGCAACAATTAAACTGTCTA+TGG 0.329367 4_4:-39862759 None:intergenic
CCTTGAGCATAAGAATGTTT+TGG 0.340479 4_4:+39856945 Msa0680700:five_prime_UTR
CTCCATTCCCAAATCCTTCA+TGG 0.341014 4_4:-39862298 None:intergenic
AAAATTGCCATGAAGGATTT+GGG 0.357512 4_4:+39862291 Msa0680700:CDS
GCATTGGGTTTAAATACATT+TGG 0.366725 4_4:+39860028 Msa0680700:CDS
AGATAAAGTTTCTTCACATT+TGG 0.367398 4_4:-39857144 None:intergenic
CAGAATATAGTTTCACTTGA+AGG 0.368930 4_4:-39865085 None:intergenic
CAAAGAACCTTTCCCTGGTT+GGG 0.394468 4_4:+39862600 Msa0680700:CDS
ACCAATATTATTAATCTCTC+TGG 0.400163 4_4:-39865124 None:intergenic
GTATAACTCTTGAAGTAGAT+TGG 0.417054 4_4:-39859815 None:intergenic
TAAGTGCTGGTAATGATTGT+AGG 0.428342 4_4:-39862577 None:intergenic
AGGCCTTATGTGTTCTTCAA+TGG 0.430189 4_4:+39864776 Msa0680700:CDS
GTGCTTGTCCACGTATCAAC+AGG 0.430498 4_4:+39860097 Msa0680700:CDS
GAAGCAGATCCCTGCTGATA+TGG 0.433499 4_4:+39863366 Msa0680700:intron
TTAATTGTTGCATATGGTAA+AGG 0.436186 4_4:+39862770 Msa0680700:CDS
CAACCAAACGCATCACAGTA+TGG 0.440243 4_4:-39864745 None:intergenic
AGTTGGCAAAGTTACAGTAT+TGG 0.448842 4_4:+39863564 Msa0680700:CDS
AAGGAATATTTGACAATGCC+AGG 0.451920 4_4:-39865066 None:intergenic
CCTTTCCCTGGTTGGGTCGA+AGG 0.461087 4_4:+39862607 Msa0680700:CDS
CTCATTGTGCAGTCTTATAG+TGG 0.461451 4_4:-39857196 None:intergenic
ATCACGTGGGTTCATCTGTT+GGG 0.467939 4_4:+39863452 Msa0680700:CDS
TTTGTAAAGACATATGTGTT+TGG 0.467992 4_4:-39862493 None:intergenic
CTTACTCCTTCGACCCAACC+AGG 0.485945 4_4:-39862613 None:intergenic
TATCACGTGGGTTCATCTGT+TGG 0.489042 4_4:+39863451 Msa0680700:CDS
CTGGTTGGGTCGAAGGAGTA+AGG 0.490574 4_4:+39862614 Msa0680700:CDS
AGTGAAACACCAAGTTGGTA+TGG 0.494139 4_4:-39862171 None:intergenic
TGAGGAAAAGAGAGTAGTTG+AGG 0.494819 4_4:+39862221 Msa0680700:CDS
GCATTCACCACCATATCAGC+AGG 0.497234 4_4:-39863376 None:intergenic
GGATACTAAAATTGCCATGA+AGG 0.498148 4_4:+39862284 Msa0680700:CDS
ACAAAGAACCTTTCCCTGGT+TGG 0.498389 4_4:+39862599 Msa0680700:CDS
TTTCCTTCCTTGTCAAAACA+TGG 0.503424 4_4:-39863532 None:intergenic
GAAAGGTTCTTTGTAAGTGC+TGG 0.505594 4_4:-39862590 None:intergenic
GGTCCATACTGTGATGCGTT+TGG 0.526662 4_4:+39864742 Msa0680700:CDS
AATGCTAGTGGGAACTATGA+AGG 0.527078 4_4:+39862528 Msa0680700:CDS
TATGTCTTTACAAAGGCAAT+GGG 0.529172 4_4:+39862502 Msa0680700:CDS
GGACTTGTTCAAATTGCTGA+AGG 0.533109 4_4:+39859698 Msa0680700:five_prime_UTR
ACAAGAGGGAGCTACTGAAA+AGG 0.533743 4_4:+39862263 Msa0680700:CDS
TGCCATGAAGGATTTGGGAA+TGG 0.534798 4_4:+39862296 Msa0680700:CDS
GAAGGAAAAGCCATCAAAGT+TGG 0.538912 4_4:+39863547 Msa0680700:CDS
CAAATAGCAGCAAGACTAAG+TGG 0.540285 4_4:+39864970 Msa0680700:CDS
ATACTGCCAAATTGATCCAT+TGG 0.540433 4_4:-39856913 None:intergenic
TGCAGATATGATGTAGCATT+GGG 0.544440 4_4:+39860013 Msa0680700:intron
AAAGAGAGTTACTCTTTGCA+AGG 0.545203 4_4:-39856987 None:intergenic
ACTTACAAAGAACCTTTCCC+TGG 0.545331 4_4:+39862595 Msa0680700:CDS
TCAGAGCAAAGTTATATGGA+TGG 0.546766 4_4:+39862470 Msa0680700:intron
ACGCCATTGAAGAACACATA+AGG 0.551013 4_4:-39864779 None:intergenic
CCAAAACATTCTTATGCTCA+AGG 0.551300 4_4:-39856945 None:intergenic
CTGCCAAATTGATCCATTGG+TGG 0.553161 4_4:-39856910 None:intergenic
AAGACTAAGTGGAGTAGAGA+TGG 0.553343 4_4:+39864981 Msa0680700:CDS
ATGCAGATATGATGTAGCAT+TGG 0.559269 4_4:+39860012 Msa0680700:intron
AGAGAGATTAATAATATTGG+TGG 0.562368 4_4:+39865126 Msa0680700:three_prime_UTR
ATTGAACATGCTTCAACAAG+AGG 0.567383 4_4:+39862248 Msa0680700:CDS
GAATGCAATGCTAGTGGCCA+TGG 0.569856 4_4:+39863393 Msa0680700:CDS
CTAAGACTCTCATATCTCAC+AGG 0.569873 4_4:-39863478 None:intergenic
CAACAACTAACTTTGATGAA+AGG 0.576712 4_4:+39859869 Msa0680700:CDS
TTTAAACTTCTCATTACGTG+TGG 0.585784 4_4:+39865168 Msa0680700:three_prime_UTR
ATATGTCTTTACAAAGGCAA+TGG 0.586877 4_4:+39862501 Msa0680700:CDS
GAGAGGAGGACTGATAGTAG+AGG 0.600345 4_4:+39862146 Msa0680700:CDS
GGCAATGGGAGAAATGCTAG+TGG 0.600756 4_4:+39862516 Msa0680700:CDS
CATTTAGTGAAACACCAAGT+TGG 0.601093 4_4:-39862176 None:intergenic
CCTTCGACCCAACCAGGGAA+AGG 0.605631 4_4:-39862607 None:intergenic
TTAAATGTAGCATACGTATG+TGG 0.610970 4_4:+39862120 Msa0680700:intron
AAACTGCCTCTAAGTCTGCA+AGG 0.617704 4_4:-39862808 None:intergenic
AAATTGCTGAAGGAAAATCA+TGG 0.619305 4_4:+39859708 Msa0680700:exon
GTTTCACTAAATGGAGTGCA+AGG 0.619534 4_4:+39862186 Msa0680700:CDS
AATACAAACCTGTTGATACG+TGG 0.632502 4_4:-39860105 None:intergenic
TGTAGGTCTCACAATAACAA+TGG 0.633502 4_4:-39862560 None:intergenic
TTACTCCTTCGACCCAACCA+GGG 0.637146 4_4:-39862612 None:intergenic
CACTATAAGACTGCACAATG+AGG 0.637631 4_4:+39857197 Msa0680700:five_prime_UTR
GCATACGTATGTGGAGAGAG+AGG 0.637651 4_4:+39862129 Msa0680700:intron
TGATGATAGCATATATCACG+TGG 0.642564 4_4:+39863438 Msa0680700:CDS
TTGAACATGCTTCAACAAGA+GGG 0.645462 4_4:+39862249 Msa0680700:CDS
TGAAGGATTTGGGAATGGAG+AGG 0.647659 4_4:+39862301 Msa0680700:CDS
GCAAGGACTAGACATTGATG+AGG 0.656577 4_4:+39862203 Msa0680700:CDS
TTGATTTGCATGACTCACCA+TGG 0.657844 4_4:-39863410 None:intergenic
GTAGAGGATCCATACCAACT+TGG 0.659399 4_4:+39862162 Msa0680700:CDS
AACATGTACTTTGAAAATAG+CGG 0.660337 4_4:-39864703 None:intergenic
TACGTATGTGGAGAGAGAGG+AGG 0.668461 4_4:+39862132 Msa0680700:CDS
AAACACATATGTCTTTACAA+AGG 0.671076 4_4:+39862495 Msa0680700:CDS
GCAGATCCCTGCTGATATGG+TGG 0.671477 4_4:+39863369 Msa0680700:intron
AAAAGTGACTCTAGTGCCTG+GGG 0.681356 4_4:+39859759 Msa0680700:CDS
GCAATGGGAGAAATGCTAGT+GGG 0.681775 4_4:+39862517 Msa0680700:CDS
TGATATATGCTATCATCACA+AGG 0.681859 4_4:-39863433 None:intergenic
CATTCACCACCATATCAGCA+GGG 0.685104 4_4:-39863375 None:intergenic
GGTGGTGAATGCAATGCTAG+TGG 0.712141 4_4:+39863387 Msa0680700:CDS
GATGATAGCATATATCACGT+GGG 0.729775 4_4:+39863439 Msa0680700:CDS
ATACGTGGACAAGCACCCTG+AGG 0.756197 4_4:-39860090 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATAAAATAT+TGG + chr4_4:39860184-39860203 Msa0680700:intron 0.0%
!! ATTAATTTATTATTATTAAT+AGG + chr4_4:39860696-39860715 Msa0680700:intron 0.0%
!! AAGTTTATTAAATTTGTATA+AGG + chr4_4:39857245-39857264 Msa0680700:intron 10.0%
!!! TATACACAAATAATTTTTTT+TGG - chr4_4:39857277-39857296 None:intergenic 10.0%
!! AAAAAAATTATTTGTGTATA+AGG + chr4_4:39857277-39857296 Msa0680700:intron 10.0%
!!! TAGATTTTTATGTAATTTTA+CGG - chr4_4:39857599-39857618 None:intergenic 10.0%
!!! TTTTAGTTAAATATGTTAAT+TGG - chr4_4:39858131-39858150 None:intergenic 10.0%
!! TGTATATTAATAGAAAAATA+CGG - chr4_4:39858276-39858295 None:intergenic 10.0%
!! AAATATCTTGAATAATATAT+TGG - chr4_4:39858379-39858398 None:intergenic 10.0%
!!! GTTATATTAGTATTTTTTTA+AGG + chr4_4:39860152-39860171 Msa0680700:intron 10.0%
!! TAAAAAATTTCTAAATTTGA+TGG - chr4_4:39860427-39860446 None:intergenic 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG - chr4_4:39860935-39860954 None:intergenic 10.0%
!!! GTCATTTTTTTTAATTTTTT+TGG + chr4_4:39860867-39860886 Msa0680700:intron 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG + chr4_4:39860935-39860954 Msa0680700:intron 10.0%
!! AAATTAAAGAAAATGTTAAA+AGG + chr4_4:39861229-39861248 Msa0680700:intron 10.0%
!! AATTAACTACAATAAAAAAT+TGG - chr4_4:39862651-39862670 None:intergenic 10.0%
!! AAAAAAACAAGAAAAAAATT+AGG - chr4_4:39864271-39864290 None:intergenic 10.0%
!!! TTATTATTCATTTGAAATTT+TGG + chr4_4:39864856-39864875 Msa0680700:intron 10.0%
!! AAATCACAAAAATATCTTAT+CGG + chr4_4:39857758-39857777 Msa0680700:intron 15.0%
!!! AACTTTTATGATGTAAATTT+AGG + chr4_4:39858064-39858083 Msa0680700:intron 15.0%
!! AATTCATGAAATTAATTATG+AGG + chr4_4:39858945-39858964 Msa0680700:intron 15.0%
!! TGAATGAAAATTATAATTAG+TGG - chr4_4:39859021-39859040 None:intergenic 15.0%
!! AAGTTATCTTAAATATAAGA+CGG + chr4_4:39859083-39859102 Msa0680700:intron 15.0%
!!! ATTTTCCAACTTTTTTTTTT+TGG - chr4_4:39859266-39859285 None:intergenic 15.0%
!!! AATTTGATGGATATAAATAT+AGG - chr4_4:39860414-39860433 None:intergenic 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG - chr4_4:39860936-39860955 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG - chr4_4:39860934-39860953 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG + chr4_4:39860934-39860953 Msa0680700:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG + chr4_4:39860936-39860955 Msa0680700:intron 15.0%
!!! TGTGTTTGATAATATTAATA+AGG - chr4_4:39861011-39861030 None:intergenic 15.0%
!!! AAAATTTTGAATTTTCTCAA+TGG + chr4_4:39861168-39861187 Msa0680700:intron 15.0%
!!! TTTTTTTAAGGATTATATGT+AGG + chr4_4:39861450-39861469 Msa0680700:intron 15.0%
!!! TTTTTTAAGGATTATATGTA+GGG + chr4_4:39861451-39861470 Msa0680700:intron 15.0%
!!! TATTTTATTTTATTGGTTCT+AGG - chr4_4:39861877-39861896 None:intergenic 15.0%
!! AGAACCAATAAAATAAAATA+TGG + chr4_4:39861877-39861896 Msa0680700:intron 15.0%
!! TTAATTAATTTCAATAAGCA+TGG - chr4_4:39862082-39862101 None:intergenic 15.0%
!!! TTTGTTGTTAATTTGTTTAT+TGG - chr4_4:39862416-39862435 None:intergenic 15.0%
!!! TTTAGTTTATCTTCTTTAAA+AGG + chr4_4:39862850-39862869 Msa0680700:intron 15.0%
!!! ATATTTTATCCAAAGAATTT+GGG + chr4_4:39862992-39863011 Msa0680700:intron 15.0%
!! TAGGTATTAAAAAATTAACA+TGG - chr4_4:39863086-39863105 None:intergenic 15.0%
!! AATCTTCTTGAATTAAAAAA+AGG + chr4_4:39863249-39863268 Msa0680700:intron 15.0%
!! ATCTTCTTGAATTAAAAAAA+GGG + chr4_4:39863250-39863269 Msa0680700:intron 15.0%
!! ACATAACTAAATGTATAATT+AGG + chr4_4:39863305-39863324 Msa0680700:intron 15.0%
!!! TAATTAAATCAATTTTGTCT+AGG - chr4_4:39863331-39863350 None:intergenic 15.0%
!! AATTAATTATGTGTTAACTT+TGG - chr4_4:39863721-39863740 None:intergenic 15.0%
!! ATAATGTAAGTAGATAAAAT+TGG + chr4_4:39863895-39863914 Msa0680700:intron 15.0%
!!! TTTTCTCTTCTAAATTTTTT+TGG + chr4_4:39864410-39864429 Msa0680700:intron 15.0%
!!! TAATTAATTTGTGTTTTAAC+AGG + chr4_4:39864652-39864671 Msa0680700:intron 15.0%
!!! AATTAATTTGTGTTTTAACA+GGG + chr4_4:39864653-39864672 Msa0680700:intron 15.0%
!! AATTATTTGTGTATAAGGTA+CGG + chr4_4:39857282-39857301 Msa0680700:intron 20.0%
!!! ACTTAATAAATTGAGAGTTT+TGG - chr4_4:39857379-39857398 None:intergenic 20.0%
!! GTAATTAATGATGATTATGT+TGG + chr4_4:39857409-39857428 Msa0680700:intron 20.0%
!!! CATGCAATTTATTTTAGTAA+TGG - chr4_4:39857931-39857950 None:intergenic 20.0%
!!! CAAAATTGCATATTTTCAAA+TGG - chr4_4:39858237-39858256 None:intergenic 20.0%
!!! AATGACTACATTCAATTTTT+TGG + chr4_4:39858517-39858536 Msa0680700:intron 20.0%
!!! GAACAGTAACAATTTTTTAT+AGG - chr4_4:39858816-39858835 None:intergenic 20.0%
!!! CTTTTTGAGAATATCATAAT+TGG + chr4_4:39858986-39859005 Msa0680700:intron 20.0%
!!! TTTTCCTCAATAAAAAAAGT+TGG + chr4_4:39859113-39859132 Msa0680700:intron 20.0%
!!! CTTCAAATTGAAATTTTCTT+GGG - chr4_4:39859791-39859810 None:intergenic 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG - chr4_4:39860937-39860956 None:intergenic 20.0%
!! AAATTAAAAAAAATGACACG+TGG - chr4_4:39860864-39860883 None:intergenic 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG + chr4_4:39860937-39860956 Msa0680700:intron 20.0%
!! AAGAAAATGTTAAAAGGTAA+AGG + chr4_4:39861235-39861254 Msa0680700:intron 20.0%
!!! TTTTTAAGGATTATATGTAG+GGG + chr4_4:39861452-39861471 Msa0680700:intron 20.0%
!!! CCTACCATATTTTATTTTAT+TGG - chr4_4:39861884-39861903 None:intergenic 20.0%
!! CCAATAAAATAAAATATGGT+AGG + chr4_4:39861881-39861900 Msa0680700:intron 20.0%
!! ATTAAAGGAACACATAATAA+AGG - chr4_4:39862685-39862704 None:intergenic 20.0%
!! ATAAAAAGTGATCAAAATTG+TGG - chr4_4:39862928-39862947 None:intergenic 20.0%
!!! GATATTTTATCCAAAGAATT+TGG + chr4_4:39862991-39863010 Msa0680700:intron 20.0%
!!! TTCTTTCTAATACACAATTT+TGG - chr4_4:39863277-39863296 None:intergenic 20.0%
!! AGAAATTGAATAACCTTTAA+AGG - chr4_4:39863637-39863656 None:intergenic 20.0%
!!! TAATTCTTTTGTTGTTATGT+AGG + chr4_4:39864094-39864113 Msa0680700:intron 20.0%
!!! ATTAATTTGTGTTTTAACAG+GGG + chr4_4:39864654-39864673 Msa0680700:intron 20.0%
!! GTGTATATTTGTAGTTTTTG+TGG + chr4_4:39857101-39857120 Msa0680700:intron 25.0%
! AGATAAAGTTTCTTCACATT+TGG - chr4_4:39857147-39857166 None:intergenic 25.0%
! AGGTATGTATAGACATTAAA+AGG + chr4_4:39857217-39857236 Msa0680700:intron 25.0%
! ATGAGAGGAGTAAAAAAAAA+AGG - chr4_4:39857542-39857561 None:intergenic 25.0%
!! GAAAACTCTTAACATTCTTT+TGG + chr4_4:39857571-39857590 Msa0680700:intron 25.0%
! TAAGATTAGTACACAAAAGA+CGG - chr4_4:39858016-39858035 None:intergenic 25.0%
! AAGAAGAAAAAAAACCCTAA+AGG + chr4_4:39858094-39858113 Msa0680700:intron 25.0%
! TGTAGCAGTCTATTTATTAT+AGG + chr4_4:39858491-39858510 Msa0680700:intron 25.0%
!! TACAACTTTTATGACAACTT+TGG + chr4_4:39858600-39858619 Msa0680700:intron 25.0%
! GTCAAAAAGTTGTTAGAAAA+TGG + chr4_4:39858710-39858729 Msa0680700:intron 25.0%
!!! CTCTAATAACCTAACTTTTT+TGG + chr4_4:39858868-39858887 Msa0680700:intron 25.0%
! ATGAATTAGATTAGACAAGT+GGG - chr4_4:39858932-39858951 None:intergenic 25.0%
! GGATAATGCATATATATGTA+GGG + chr4_4:39859167-39859186 Msa0680700:intron 25.0%
! GATAATGCATATATATGTAG+GGG + chr4_4:39859168-39859187 Msa0680700:intron 25.0%
! CTTGACCAAAAAAAAAAAGT+TGG + chr4_4:39859258-39859277 Msa0680700:intron 25.0%
!!! AAAATTTTTCAAGACACATG+TGG + chr4_4:39859312-39859331 Msa0680700:intron 25.0%
! ATCCTAAAGTATATTTGTGA+TGG + chr4_4:39859521-39859540 Msa0680700:intron 25.0%
!! CCTTCAAATTGAAATTTTCT+TGG - chr4_4:39859792-39859811 None:intergenic 25.0%
! CCAAGAAAATTTCAATTTGA+AGG + chr4_4:39859789-39859808 Msa0680700:CDS 25.0%
! CAAAAATTGTATTAACCTCA+GGG + chr4_4:39860075-39860094 Msa0680700:CDS 25.0%
! TTTGAAAAGCTCTCATTTAT+CGG + chr4_4:39860230-39860249 Msa0680700:intron 25.0%
! AAAGATGCATATTGGAATTT+AGG - chr4_4:39860289-39860308 None:intergenic 25.0%
!!! AGATGAATTTTTCAATTACG+TGG + chr4_4:39860450-39860469 Msa0680700:intron 25.0%
! TGCATCTTAAGATAGTTATT+AGG + chr4_4:39860511-39860530 Msa0680700:intron 25.0%
!!! TTTTAATTTTTTTGGCCTTG+CGG + chr4_4:39860875-39860894 Msa0680700:intron 25.0%
!!! TATTGATTCTTTGACAGTTT+TGG - chr4_4:39860903-39860922 None:intergenic 25.0%
! TGTCAAAGAATCAATACTTA+AGG + chr4_4:39860907-39860926 Msa0680700:intron 25.0%
! GTCAAAGAATCAATACTTAA+GGG + chr4_4:39860908-39860927 Msa0680700:intron 25.0%
! TCAAAGAATCAATACTTAAG+GGG + chr4_4:39860909-39860928 Msa0680700:intron 25.0%
!!! TTTCTCAATGGATTGATTTT+TGG + chr4_4:39861180-39861199 Msa0680700:intron 25.0%
!!! TTCTCAATGGATTGATTTTT+GGG + chr4_4:39861181-39861200 Msa0680700:intron 25.0%
! ATAAGAAGTGAATGAATTGA+AGG + chr4_4:39861300-39861319 Msa0680700:intron 25.0%
! TAAGAAGTGAATGAATTGAA+GGG + chr4_4:39861301-39861320 Msa0680700:intron 25.0%
!!! GTTCATAGTGCATTTTTTTA+AGG + chr4_4:39861438-39861457 Msa0680700:intron 25.0%
! TTGCAATTTATCTTCATTCA+GGG - chr4_4:39861525-39861544 None:intergenic 25.0%
! TTTGCAATTTATCTTCATTC+AGG - chr4_4:39861526-39861545 None:intergenic 25.0%
!!! TACATGAATTTTAATAGACC+AGG + chr4_4:39861750-39861769 Msa0680700:intron 25.0%
!!! ACATGAATTTTAATAGACCA+GGG + chr4_4:39861751-39861770 Msa0680700:intron 25.0%
! CATTTAGTATCAATCAATGT+AGG + chr4_4:39862052-39862071 Msa0680700:intron 25.0%
!! ATTTTCAGAGCAAAGTTATA+TGG + chr4_4:39862466-39862485 Msa0680700:intron 25.0%
! TTTGTAAAGACATATGTGTT+TGG - chr4_4:39862496-39862515 None:intergenic 25.0%
! AAACACATATGTCTTTACAA+AGG + chr4_4:39862495-39862514 Msa0680700:CDS 25.0%
! TTAATTGTTGCATATGGTAA+AGG + chr4_4:39862770-39862789 Msa0680700:CDS 25.0%
!!! AGTTGATATTATTACCCTTT+TGG + chr4_4:39862882-39862901 Msa0680700:intron 25.0%
! CAAAAATATGAAGACCAAAA+GGG - chr4_4:39862899-39862918 None:intergenic 25.0%
! TCAAAAATATGAAGACCAAA+AGG - chr4_4:39862900-39862919 None:intergenic 25.0%
! AAAACTTTACCCAAATTCTT+TGG - chr4_4:39863004-39863023 None:intergenic 25.0%
!!! TTGGGTAAAGTTTTGATAAT+AGG + chr4_4:39863010-39863029 Msa0680700:intron 25.0%
!!! GTTTTCTGTTAGTTTATTGT+AGG - chr4_4:39863064-39863083 None:intergenic 25.0%
! AATGATTATGACATATAGGT+AGG - chr4_4:39863164-39863183 None:intergenic 25.0%
! GACAAATGATTATGACATAT+AGG - chr4_4:39863168-39863187 None:intergenic 25.0%
! TGGAAAAATAGAAGTAATTG+AGG - chr4_4:39863663-39863682 None:intergenic 25.0%
! TTAATAGATAACGAGTACAA+CGG - chr4_4:39863815-39863834 None:intergenic 25.0%
! TGTAAGTAGATAAAATTGGT+AGG + chr4_4:39863899-39863918 Msa0680700:intron 25.0%
! GTAAGTAGATAAAATTGGTA+GGG + chr4_4:39863900-39863919 Msa0680700:intron 25.0%
!!! TCTCTTCTAAATTTTTTTGG+AGG + chr4_4:39864413-39864432 Msa0680700:intron 25.0%
! AATTTAATATGCTAAGATCC+AGG - chr4_4:39864489-39864508 None:intergenic 25.0%
!! ATAAGAGTATAATCATGTTG+TGG - chr4_4:39864601-39864620 None:intergenic 25.0%
!! AACATGTACTTTGAAAATAG+CGG - chr4_4:39864706-39864725 None:intergenic 25.0%
! ACCAATATTATTAATCTCTC+TGG - chr4_4:39865127-39865146 None:intergenic 25.0%
! AGAGAGATTAATAATATTGG+TGG + chr4_4:39865126-39865145 Msa0680700:three_prime_UTR 25.0%
!! TACTTTAACTTTTCCACCAA+TGG + chr4_4:39856897-39856916 Msa0680700:five_prime_UTR 30.0%
!!! CATAAGAATGTTTTGGTACT+TGG + chr4_4:39856952-39856971 Msa0680700:five_prime_UTR 30.0%
!! TTATCTTCTTTTGAGAGCTA+CGG + chr4_4:39857161-39857180 Msa0680700:five_prime_UTR 30.0%
TTATGTTGGTATCTTAAGTG+TGG + chr4_4:39857423-39857442 Msa0680700:intron 30.0%
GTACTATAAGTGAGTAAAGA+TGG + chr4_4:39857482-39857501 Msa0680700:intron 30.0%
! GAATGTTAAGAGTTTTCTCT+TGG - chr4_4:39857568-39857587 None:intergenic 30.0%
TCACAAAAATATCTTATCGG+TGG + chr4_4:39857761-39857780 Msa0680700:intron 30.0%
TTCAAATGGATCATCTATTG+CGG - chr4_4:39858223-39858242 None:intergenic 30.0%
AAATACGGTCAAAGTAAGTT+AGG - chr4_4:39858261-39858280 None:intergenic 30.0%
! ATGCATTGACATGCTTAATA+AGG + chr4_4:39858411-39858430 Msa0680700:intron 30.0%
TTGTGTCAAGTATTATGAGA+TGG + chr4_4:39858438-39858457 Msa0680700:intron 30.0%
GTGATATTTGTACAACTCTT+TGG + chr4_4:39858577-39858596 Msa0680700:intron 30.0%
!! TTGGTTTTCTCTCTTTTGAT+TGG + chr4_4:39858619-39858638 Msa0680700:intron 30.0%
! TAAGTGTTGCCAAAAAAGTT+AGG - chr4_4:39858880-39858899 None:intergenic 30.0%
CATGAATTAGATTAGACAAG+TGG - chr4_4:39858933-39858952 None:intergenic 30.0%
AGAATATCATAATTGGTGAG+TGG + chr4_4:39858993-39859012 Msa0680700:intron 30.0%
!!! GCTTCCAACTTTTTTTATTG+AGG - chr4_4:39859120-39859139 None:intergenic 30.0%
GGGATAATGCATATATATGT+AGG + chr4_4:39859166-39859185 Msa0680700:intron 30.0%
CACCATCACAAATATACTTT+AGG - chr4_4:39859526-39859545 None:intergenic 30.0%
! TCATATGTAGATTTTGCGAA+AGG + chr4_4:39859677-39859696 Msa0680700:intron 30.0%
AAATTGCTGAAGGAAAATCA+TGG + chr4_4:39859708-39859727 Msa0680700:exon 30.0%
GTATAACTCTTGAAGTAGAT+TGG - chr4_4:39859818-39859837 None:intergenic 30.0%
CAACAACTAACTTTGATGAA+AGG + chr4_4:39859869-39859888 Msa0680700:CDS 30.0%
GCATTGGGTTTAAATACATT+TGG + chr4_4:39860028-39860047 Msa0680700:CDS 30.0%
! CCTGAGGTTAATACAATTTT+TGG - chr4_4:39860077-39860096 None:intergenic 30.0%
CCAAAAATTGTATTAACCTC+AGG + chr4_4:39860074-39860093 Msa0680700:CDS 30.0%
! AGAGCTTTTCAAACAATCTT+GGG - chr4_4:39860223-39860242 None:intergenic 30.0%
! ATCGGAAAGATAGTTTTTGA+TGG + chr4_4:39860248-39860267 Msa0680700:intron 30.0%
! ATAGTGGAAAAGATGCATAT+TGG - chr4_4:39860297-39860316 None:intergenic 30.0%
! TCTTTTCCACTATAATCTCT+CGG + chr4_4:39860304-39860323 Msa0680700:intron 30.0%
!! TTTTTGAGCTTGAGCAATAT+AGG + chr4_4:39860364-39860383 Msa0680700:intron 30.0%
ACTTTACAATAGTCCTTATG+CGG + chr4_4:39860648-39860667 Msa0680700:intron 30.0%
TCAAAAAATGAAACCGCATA+AGG - chr4_4:39860664-39860683 None:intergenic 30.0%
TGCCAAAGATTCAATACTTA+GGG - chr4_4:39860800-39860819 None:intergenic 30.0%
! TATTGAATCTTTGGCAGTTT+TGG + chr4_4:39860804-39860823 Msa0680700:intron 30.0%
!!! TTTAATTTTTTTGGCCTTGC+GGG + chr4_4:39860876-39860895 Msa0680700:intron 30.0%
ATCATCATGCAAGTTAATTG+CGG - chr4_4:39861094-39861113 None:intergenic 30.0%
GGTGCAACATTATATAATCA+GGG + chr4_4:39861414-39861433 Msa0680700:intron 30.0%
GTGCAACATTATATAATCAG+GGG + chr4_4:39861415-39861434 Msa0680700:intron 30.0%
TGCAACATTATATAATCAGG+GGG + chr4_4:39861416-39861435 Msa0680700:intron 30.0%
ACTAACAAAGTGTACATTCA+GGG + chr4_4:39861646-39861665 Msa0680700:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG + chr4_4:39861674-39861693 Msa0680700:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG + chr4_4:39861675-39861694 Msa0680700:intron 30.0%
!! CATGAATTTTAATAGACCAG+GGG + chr4_4:39861752-39861771 Msa0680700:intron 30.0%
!! ATGAATTTTAATAGACCAGG+GGG + chr4_4:39861753-39861772 Msa0680700:intron 30.0%
!! CTATTTTTCGCAATTCAATG+TGG + chr4_4:39861831-39861850 Msa0680700:intron 30.0%
CTTGTCTATTACTCCATTTA+AGG - chr4_4:39861972-39861991 None:intergenic 30.0%
GAATACCACAAAAGTTTAGT+TGG + chr4_4:39862013-39862032 Msa0680700:intron 30.0%
!! TAGTTGGTGAACTTAATATG+TGG + chr4_4:39862029-39862048 Msa0680700:intron 30.0%
TTAAATGTAGCATACGTATG+TGG + chr4_4:39862120-39862139 Msa0680700:intron 30.0%
TAAAATTGCCATGAAGGATT+TGG + chr4_4:39862290-39862309 Msa0680700:CDS 30.0%
AAAATTGCCATGAAGGATTT+GGG + chr4_4:39862291-39862310 Msa0680700:CDS 30.0%
ATATGTCTTTACAAAGGCAA+TGG + chr4_4:39862501-39862520 Msa0680700:CDS 30.0%
TATGTCTTTACAAAGGCAAT+GGG + chr4_4:39862502-39862521 Msa0680700:CDS 30.0%
TGCAACAATTAAACTGTCTA+TGG - chr4_4:39862762-39862781 None:intergenic 30.0%
GACAGTTTAATTGTTGCATA+TGG + chr4_4:39862764-39862783 Msa0680700:CDS 30.0%
! ATATTTTACTTGCACGTCAT+TGG + chr4_4:39863194-39863213 Msa0680700:intron 30.0%
!!! AACGTCACACTTTTTTGAAA+TGG + chr4_4:39863220-39863239 Msa0680700:intron 30.0%
!!! ACGTCACACTTTTTTGAAAT+GGG + chr4_4:39863221-39863240 Msa0680700:intron 30.0%
TGATATATGCTATCATCACA+AGG - chr4_4:39863436-39863455 None:intergenic 30.0%
! CTACAGCTTCAGATATTTTA+CGG + chr4_4:39863504-39863523 Msa0680700:CDS 30.0%
AAGTCTAAATGTTGCATGAA+TGG - chr4_4:39863683-39863702 None:intergenic 30.0%
TTATGTGTTAACTTTGGACA+TGG - chr4_4:39863715-39863734 None:intergenic 30.0%
GTTTAATTGCGATACATTGT+CGG - chr4_4:39863776-39863795 None:intergenic 30.0%
ATGTATCGCAATTAAACTCT+AGG + chr4_4:39863779-39863798 Msa0680700:intron 30.0%
TGTATCGCAATTAAACTCTA+GGG + chr4_4:39863780-39863799 Msa0680700:intron 30.0%
TAATAGATAACGAGTACAAC+GGG - chr4_4:39863814-39863833 None:intergenic 30.0%
! TACATTATAAGTCCGTTTTG+CGG - chr4_4:39863883-39863902 None:intergenic 30.0%
TTGATATTGCTGTAATGCTA+CGG - chr4_4:39864052-39864071 None:intergenic 30.0%
GCATTACAGCAATATCAATT+TGG + chr4_4:39864054-39864073 Msa0680700:intron 30.0%
ACAACAAAAGAATTACCACT+GGG - chr4_4:39864089-39864108 None:intergenic 30.0%
AACAACAAAAGAATTACCAC+TGG - chr4_4:39864090-39864109 None:intergenic 30.0%
!!! TTCTTTTGTTGTTATGTAGG+AGG + chr4_4:39864097-39864116 Msa0680700:intron 30.0%
!!! TGTATTTTTTCCAGCATGAT+AGG + chr4_4:39864233-39864252 Msa0680700:intron 30.0%
!!! ATGTTTTGATATCAGCAGAA+AGG + chr4_4:39864721-39864740 Msa0680700:CDS 30.0%
TTCATGAACATTCATATTCC+TGG + chr4_4:39865048-39865067 Msa0680700:CDS 30.0%
CAGAATATAGTTTCACTTGA+AGG - chr4_4:39865088-39865107 None:intergenic 30.0%
GCCAGAGAGATTAATAATAT+TGG + chr4_4:39865123-39865142 Msa0680700:three_prime_UTR 30.0%
TTTAAACTTCTCATTACGTG+TGG + chr4_4:39865168-39865187 Msa0680700:three_prime_UTR 30.0%
TTTCCACCAATGGATCAATT+TGG + chr4_4:39856907-39856926 Msa0680700:five_prime_UTR 35.0%
ATACTGCCAAATTGATCCAT+TGG - chr4_4:39856916-39856935 None:intergenic 35.0%
CCAAAACATTCTTATGCTCA+AGG - chr4_4:39856948-39856967 None:intergenic 35.0%
! CCTTGAGCATAAGAATGTTT+TGG + chr4_4:39856945-39856964 Msa0680700:five_prime_UTR 35.0%
AAAGAGAGTTACTCTTTGCA+AGG - chr4_4:39856990-39857009 None:intergenic 35.0%
TATTTGTGTATAAGGTACGG+TGG + chr4_4:39857285-39857304 Msa0680700:intron 35.0%
AAACACAAGGACAAAAGAGA+GGG - chr4_4:39857329-39857348 None:intergenic 35.0%
ATGTCTCATGAAGAAACACA+AGG - chr4_4:39857342-39857361 None:intergenic 35.0%
TCCAAATCTACTGTTGTTGT+CGG + chr4_4:39857790-39857809 Msa0680700:intron 35.0%
TCATGCATATGCTCTTTCTT+TGG + chr4_4:39857848-39857867 Msa0680700:intron 35.0%
!! GTACACAAAAGACGGATTTT+TGG - chr4_4:39858008-39858027 None:intergenic 35.0%
!! TGGTGTCTTTTTCACCTTTA+GGG - chr4_4:39858111-39858130 None:intergenic 35.0%
!! TTGGTGTCTTTTTCACCTTT+AGG - chr4_4:39858112-39858131 None:intergenic 35.0%
TGTCAAGTATTATGAGATGG+AGG + chr4_4:39858441-39858460 Msa0680700:intron 35.0%
GTCAAGTATTATGAGATGGA+GGG + chr4_4:39858442-39858461 Msa0680700:intron 35.0%
! ATGGAGGGAGTAACATTTTA+AGG + chr4_4:39858457-39858476 Msa0680700:intron 35.0%
!!! CCGTTTAAACTGCTACTTTT+GGG - chr4_4:39858844-39858863 None:intergenic 35.0%
CCCAAAAGTAGCAGTTTAAA+CGG + chr4_4:39858841-39858860 Msa0680700:intron 35.0%
!!! ACCGTTTAAACTGCTACTTT+TGG - chr4_4:39858845-39858864 None:intergenic 35.0%
AAAGTAGCAGTTTAAACGGT+TGG + chr4_4:39858845-39858864 Msa0680700:intron 35.0%
ATGCATATATATGTAGGGGT+CGG + chr4_4:39859172-39859191 Msa0680700:intron 35.0%
ACCTTAAAGGTGAATAAGTG+GGG - chr4_4:39859215-39859234 None:intergenic 35.0%
CACCTTAAAGGTGAATAAGT+GGG - chr4_4:39859216-39859235 None:intergenic 35.0%
TCACCTTAAAGGTGAATAAG+TGG - chr4_4:39859217-39859236 None:intergenic 35.0%
GCTAGAGAAATTCACCTTAA+AGG - chr4_4:39859228-39859247 None:intergenic 35.0%
ATGCAGATATGATGTAGCAT+TGG + chr4_4:39860012-39860031 Msa0680700:intron 35.0%
TGCAGATATGATGTAGCATT+GGG + chr4_4:39860013-39860032 Msa0680700:intron 35.0%
AATACAAACCTGTTGATACG+TGG - chr4_4:39860108-39860127 None:intergenic 35.0%
! GAGAGCTTTTCAAACAATCT+TGG - chr4_4:39860224-39860243 None:intergenic 35.0%
TAGAATCCGAGAGATTATAG+TGG - chr4_4:39860313-39860332 None:intergenic 35.0%
ACTATAATCTCTCGGATTCT+AGG + chr4_4:39860312-39860331 Msa0680700:intron 35.0%
CTACAAGTGTACAAGAAAAG+TGG + chr4_4:39860487-39860506 Msa0680700:intron 35.0%
ATAGTTATTAGGTCCATCAG+TGG + chr4_4:39860522-39860541 Msa0680700:intron 35.0%
CCAAAGATTCAATACTTAGG+GGG - chr4_4:39860798-39860817 None:intergenic 35.0%
GCCAAAGATTCAATACTTAG+GGG - chr4_4:39860799-39860818 None:intergenic 35.0%
CTGCCAAAGATTCAATACTT+AGG - chr4_4:39860801-39860820 None:intergenic 35.0%
!!! TTAATTTTTTTGGCCTTGCG+GGG + chr4_4:39860877-39860896 Msa0680700:intron 35.0%
GCATGATGATCACTTTATCT+TGG + chr4_4:39861104-39861123 Msa0680700:intron 35.0%
! GTAAAGGAAAGTACATGAAG+TGG + chr4_4:39861251-39861270 Msa0680700:intron 35.0%
AGAGTGAAAGGATGCAAATT+CGG + chr4_4:39861364-39861383 Msa0680700:intron 35.0%
GGGTGCAACATTATATAATC+AGG + chr4_4:39861413-39861432 Msa0680700:intron 35.0%
ACTAATGGAGTCTACATTCA+GGG + chr4_4:39861582-39861601 Msa0680700:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + chr4_4:39861614-39861633 Msa0680700:intron 35.0%
GACTAACAAAGTGTACATTC+AGG + chr4_4:39861645-39861664 Msa0680700:intron 35.0%
TTATGGTCATATGTTGAGCT+TGG - chr4_4:39861935-39861954 None:intergenic 35.0%
AGGTATGTGTTGCAGTATTA+TGG - chr4_4:39861952-39861971 None:intergenic 35.0%
ACTGCAACACATACCTTAAA+TGG + chr4_4:39861956-39861975 Msa0680700:intron 35.0%
! GTTCACCAACTAAACTTTTG+TGG - chr4_4:39862021-39862040 None:intergenic 35.0%
CATTTAGTGAAACACCAAGT+TGG - chr4_4:39862179-39862198 None:intergenic 35.0%
!! CAACTTGGTGTTTCACTAAA+TGG + chr4_4:39862177-39862196 Msa0680700:CDS 35.0%
ATTGAACATGCTTCAACAAG+AGG + chr4_4:39862248-39862267 Msa0680700:CDS 35.0%
TTGAACATGCTTCAACAAGA+GGG + chr4_4:39862249-39862268 Msa0680700:CDS 35.0%
GGATACTAAAATTGCCATGA+AGG + chr4_4:39862284-39862303 Msa0680700:CDS 35.0%
TCAGAGCAAAGTTATATGGA+TGG + chr4_4:39862470-39862489 Msa0680700:intron 35.0%
TGTAGGTCTCACAATAACAA+TGG - chr4_4:39862563-39862582 None:intergenic 35.0%
!! TAAGTGCTGGTAATGATTGT+AGG - chr4_4:39862580-39862599 None:intergenic 35.0%
TAGGTGGATGGGTATATTAT+AGG - chr4_4:39863145-39863164 None:intergenic 35.0%
GATTATGACATATAGGTAGG+TGG - chr4_4:39863161-39863180 None:intergenic 35.0%
!!! CGTCACACTTTTTTGAAATG+GGG + chr4_4:39863222-39863241 Msa0680700:intron 35.0%
TGATGATAGCATATATCACG+TGG + chr4_4:39863438-39863457 Msa0680700:CDS 35.0%
GATGATAGCATATATCACGT+GGG + chr4_4:39863439-39863458 Msa0680700:CDS 35.0%
!!! AAACCATGTTTTGACAAGGA+AGG + chr4_4:39863529-39863548 Msa0680700:CDS 35.0%
TTTCCTTCCTTGTCAAAACA+TGG - chr4_4:39863535-39863554 None:intergenic 35.0%
TGTAACTTTGCCAACTTTGA+TGG - chr4_4:39863560-39863579 None:intergenic 35.0%
AGTTGGCAAAGTTACAGTAT+TGG + chr4_4:39863564-39863583 Msa0680700:CDS 35.0%
TCGTTACTTGCTTCCTTTAA+AGG + chr4_4:39863621-39863640 Msa0680700:CDS 35.0%
!! GCAATTAAACTCTAGGGTTT+GGG + chr4_4:39863786-39863805 Msa0680700:intron 35.0%
CTAATAGTATACCCGCAAAA+CGG + chr4_4:39863868-39863887 Msa0680700:intron 35.0%
! ACATTATAAGTCCGTTTTGC+GGG - chr4_4:39863882-39863901 None:intergenic 35.0%
! AAATTGGTAGGGTTTTTACC+TGG + chr4_4:39863911-39863930 Msa0680700:intron 35.0%
!! TATTTTGGGCCCCTAAAATT+GGG - chr4_4:39863988-39864007 None:intergenic 35.0%
!! ATATTTTGGGCCCCTAAAAT+TGG - chr4_4:39863989-39864008 None:intergenic 35.0%
TGATATTGCTGTAATGCTAC+GGG - chr4_4:39864051-39864070 None:intergenic 35.0%
CAACAAAAGAATTACCACTG+GGG - chr4_4:39864088-39864107 None:intergenic 35.0%
! AGCATGATAGGATCTCTTTT+GGG + chr4_4:39864245-39864264 Msa0680700:intron 35.0%
! CCTAATTTTACTAAGAGAGC+CGG + chr4_4:39864436-39864455 Msa0680700:intron 35.0%
! CTAATTTTACTAAGAGAGCC+GGG + chr4_4:39864437-39864456 Msa0680700:intron 35.0%
TTGACCCAAAAATGATTGAC+TGG + chr4_4:39865016-39865035 Msa0680700:CDS 35.0%
TGACCCAAAAATGATTGACT+GGG + chr4_4:39865017-39865036 Msa0680700:CDS 35.0%
AAGGAATATTTGACAATGCC+AGG - chr4_4:39865069-39865088 None:intergenic 35.0%
! CTCATTGTGCAGTCTTATAG+TGG - chr4_4:39857199-39857218 None:intergenic 40.0%
CACTATAAGACTGCACAATG+AGG + chr4_4:39857197-39857216 Msa0680700:five_prime_UTR 40.0%
GAAACACAAGGACAAAAGAG+AGG - chr4_4:39857330-39857349 None:intergenic 40.0%
GTGTGGTAAATATCTCACGT+TGG + chr4_4:39857440-39857459 Msa0680700:intron 40.0%
GGTAAATATCTCACGTTGGA+TGG + chr4_4:39857444-39857463 Msa0680700:intron 40.0%
! GTTTTCTCTTGGATCATGAG+AGG - chr4_4:39857557-39857576 None:intergenic 40.0%
ACCGACAACAACAGTAGATT+TGG - chr4_4:39857794-39857813 None:intergenic 40.0%
CTCACCAATGTCATGTAGAA+CGG + chr4_4:39857821-39857840 Msa0680700:intron 40.0%
ATGCTCTTTCTTTGGCAACA+TGG + chr4_4:39857856-39857875 Msa0680700:intron 40.0%
ATGGATCATCTATTGCGGAA+CGG - chr4_4:39858218-39858237 None:intergenic 40.0%
TGCATATATATGTAGGGGTC+GGG + chr4_4:39859173-39859192 Msa0680700:intron 40.0%
ACCCCACTTATTCACCTTTA+AGG + chr4_4:39859211-39859230 Msa0680700:intron 40.0%
!! TTTTTGGTCAAGTAGCCTAG+CGG - chr4_4:39859250-39859269 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - chr4_4:39859365-39859384 None:intergenic 40.0%
CTATTTGCCACAATTCAAGG+AGG - chr4_4:39859388-39859407 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - chr4_4:39859391-39859410 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr4_4:39859399-39859418 Msa0680700:intron 40.0%
GAGGTGGGTGTGAAAATTAA+TGG - chr4_4:39859573-39859592 None:intergenic 40.0%
! GGACTTGTTCAAATTGCTGA+AGG + chr4_4:39859698-39859717 Msa0680700:five_prime_UTR 40.0%
AAAAAGTGACTCTAGTGCCT+GGG + chr4_4:39859758-39859777 Msa0680700:CDS 40.0%
!!! CTCGGATTCTAGGTTTTGTT+AGG + chr4_4:39860322-39860341 Msa0680700:intron 40.0%
!!! GCAAGTTTTGGAAAGATAGG+GGG - chr4_4:39860968-39860987 None:intergenic 40.0%
!!! CGCAAGTTTTGGAAAGATAG+GGG - chr4_4:39860967-39860986 None:intergenic 40.0%
!!! CCGCAAGTTTTGGAAAGATA+GGG - chr4_4:39860966-39860985 None:intergenic 40.0%
CCCTATCTTTCCAAAACTTG+CGG + chr4_4:39860738-39860757 Msa0680700:intron 40.0%
!!! ACCGCAAGTTTTGGAAAGAT+AGG - chr4_4:39860965-39860984 None:intergenic 40.0%
!! CCCCCTAAGTATTGAATCTT+TGG + chr4_4:39860795-39860814 Msa0680700:intron 40.0%
!!! ACCGCAAGTTTTGGAAAGAT+AGG + chr4_4:39860965-39860984 Msa0680700:intron 40.0%
CCCTATCTTTCCAAAACTTG+CGG - chr4_4:39860738-39860757 None:intergenic 40.0%
!!! CCGCAAGTTTTGGAAAGATA+GGG + chr4_4:39860966-39860985 Msa0680700:intron 40.0%
!!! CGCAAGTTTTGGAAAGATAG+GGG + chr4_4:39860967-39860986 Msa0680700:intron 40.0%
!!! GCAAGTTTTGGAAAGATAGG+GGG + chr4_4:39860968-39860987 Msa0680700:intron 40.0%
GTGCATATAGTGAGAGTGAA+AGG + chr4_4:39861352-39861371 Msa0680700:intron 40.0%
GCAGTGTTTGATTGAATGCA+GGG + chr4_4:39861392-39861411 Msa0680700:intron 40.0%
CAGTGTTTGATTGAATGCAG+GGG + chr4_4:39861393-39861412 Msa0680700:intron 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG + chr4_4:39861478-39861497 Msa0680700:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG + chr4_4:39861479-39861498 Msa0680700:intron 40.0%
ATTGCAAAATAGTCCCTGCA+TGG + chr4_4:39861538-39861557 Msa0680700:intron 40.0%
TCAGGGACTAAAGTGACTAA+TGG + chr4_4:39861567-39861586 Msa0680700:intron 40.0%
GACTAATGGAGTCTACATTC+AGG + chr4_4:39861581-39861600 Msa0680700:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG + chr4_4:39861613-39861632 Msa0680700:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG - chr4_4:39861479-39861498 None:intergenic 40.0%
GCGAAAAATAGTGTCAGAAG+TGG - chr4_4:39861822-39861841 None:intergenic 40.0%
GGTTAATCTTACGTGCTAGT+AGG - chr4_4:39861907-39861926 None:intergenic 40.0%
! CATATGTTGAGCTTGGTTCT+AGG - chr4_4:39861928-39861947 None:intergenic 40.0%
!! AGTGAAACACCAAGTTGGTA+TGG - chr4_4:39862174-39862193 None:intergenic 40.0%
GTTTCACTAAATGGAGTGCA+AGG + chr4_4:39862186-39862205 Msa0680700:CDS 40.0%
TGAGGAAAAGAGAGTAGTTG+AGG + chr4_4:39862221-39862240 Msa0680700:CDS 40.0%
AATGCTAGTGGGAACTATGA+AGG + chr4_4:39862528-39862547 Msa0680700:CDS 40.0%
GAAAGGTTCTTTGTAAGTGC+TGG - chr4_4:39862593-39862612 None:intergenic 40.0%
ACTTACAAAGAACCTTTCCC+TGG + chr4_4:39862595-39862614 Msa0680700:CDS 40.0%
! CTTAGAGGCAGTTTTTGATG+TGG + chr4_4:39862817-39862836 Msa0680700:CDS 40.0%
! CAGTTTTTGATGTGGTGAGA+AGG + chr4_4:39862825-39862844 Msa0680700:intron 40.0%
TGACATATAGGTAGGTGGAT+GGG - chr4_4:39863156-39863175 None:intergenic 40.0%
ATGACATATAGGTAGGTGGA+TGG - chr4_4:39863157-39863176 None:intergenic 40.0%
!! TTGATTTGCATGACTCACCA+TGG - chr4_4:39863413-39863432 None:intergenic 40.0%
CTAAGACTCTCATATCTCAC+AGG - chr4_4:39863481-39863500 None:intergenic 40.0%
!!! GGCAAAACCATGTTTTGACA+AGG + chr4_4:39863525-39863544 Msa0680700:CDS 40.0%
GAAGGAAAAGCCATCAAAGT+TGG + chr4_4:39863547-39863566 Msa0680700:CDS 40.0%
!! CGCAATTAAACTCTAGGGTT+TGG + chr4_4:39863785-39863804 Msa0680700:intron 40.0%
! TGCAAATAGCTCTATAGAGC+TGG + chr4_4:39863957-39863976 Msa0680700:intron 40.0%
! GCAAATAGCTCTATAGAGCT+GGG + chr4_4:39863958-39863977 Msa0680700:intron 40.0%
! ATTTTGGGCCCCTAAAATTG+GGG - chr4_4:39863987-39864006 None:intergenic 40.0%
CAAAAGAGATCCTATCATGC+TGG - chr4_4:39864246-39864265 None:intergenic 40.0%
! CAGCATGATAGGATCTCTTT+TGG + chr4_4:39864244-39864263 Msa0680700:intron 40.0%
CCGGCTCTCTTAGTAAAATT+AGG - chr4_4:39864439-39864458 None:intergenic 40.0%
AATATGCTAAGATCCAGGCA+AGG - chr4_4:39864484-39864503 None:intergenic 40.0%
TACCGTATGAATTGTAGCTG+CGG + chr4_4:39864523-39864542 Msa0680700:intron 40.0%
TTCCGCAGCTACAATTCATA+CGG - chr4_4:39864528-39864547 None:intergenic 40.0%
TGCGTTTGGTTGAACTTTAC+AGG + chr4_4:39864756-39864775 Msa0680700:CDS 40.0%
! AGGCCTTATGTGTTCTTCAA+TGG + chr4_4:39864776-39864795 Msa0680700:CDS 40.0%
ACGCCATTGAAGAACACATA+AGG - chr4_4:39864782-39864801 None:intergenic 40.0%
CAAATAGCAGCAAGACTAAG+TGG + chr4_4:39864970-39864989 Msa0680700:CDS 40.0%
AAGACTAAGTGGAGTAGAGA+TGG + chr4_4:39864981-39865000 Msa0680700:CDS 40.0%
!! CCTCCCAGTCAATCATTTTT+GGG - chr4_4:39865023-39865042 None:intergenic 40.0%
! TCCTCCCAGTCAATCATTTT+TGG - chr4_4:39865024-39865043 None:intergenic 40.0%
CTGCCAAATTGATCCATTGG+TGG - chr4_4:39856913-39856932 None:intergenic 45.0%
GTGACAAACGTTACGTCTCT+TGG + chr4_4:39857721-39857740 Msa0680700:intron 45.0%
CGTTCTACATGACATTGGTG+AGG - chr4_4:39857823-39857842 None:intergenic 45.0%
ACCAATGTCATGTAGAACGG+TGG + chr4_4:39857824-39857843 Msa0680700:intron 45.0%
TCCACCGTTCTACATGACAT+TGG - chr4_4:39857828-39857847 None:intergenic 45.0%
ATCATCTATTGCGGAACGGA+GGG - chr4_4:39858214-39858233 None:intergenic 45.0%
TACCAAGTGAGCTATCCTCA+CGG - chr4_4:39859145-39859164 None:intergenic 45.0%
TGAGGATAGCTCACTTGGTA+AGG + chr4_4:39859145-39859164 Msa0680700:intron 45.0%
GAGGATAGCTCACTTGGTAA+GGG + chr4_4:39859146-39859165 Msa0680700:intron 45.0%
GCATATATATGTAGGGGTCG+GGG + chr4_4:39859174-39859193 Msa0680700:intron 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - chr4_4:39859371-39859390 None:intergenic 45.0%
GAAAAAGTGACTCTAGTGCC+TGG + chr4_4:39859757-39859776 Msa0680700:CDS 45.0%
AAAAGTGACTCTAGTGCCTG+GGG + chr4_4:39859759-39859778 Msa0680700:CDS 45.0%
! TTTTCTTGGGAAATGTCCCC+AGG - chr4_4:39859778-39859797 None:intergenic 45.0%
GAATTGAAGGGTCAGAACAG+TGG + chr4_4:39861313-39861332 Msa0680700:intron 45.0%
!! AAAGGATGCAAATTCGGTGC+TGG + chr4_4:39861370-39861389 Msa0680700:intron 45.0%
GGCAGTGTTTGATTGAATGC+AGG + chr4_4:39861391-39861410 Msa0680700:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG + chr4_4:39861550-39861569 Msa0680700:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG - chr4_4:39861554-39861573 None:intergenic 45.0%
CTTTAGTCCCTGAATCGGAA+GGG - chr4_4:39861716-39861735 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG - chr4_4:39861717-39861736 None:intergenic 45.0%
GTAGAGGATCCATACCAACT+TGG + chr4_4:39862162-39862181 Msa0680700:CDS 45.0%
GCAAGGACTAGACATTGATG+AGG + chr4_4:39862203-39862222 Msa0680700:CDS 45.0%
ACAAGAGGGAGCTACTGAAA+AGG + chr4_4:39862263-39862282 Msa0680700:CDS 45.0%
TGCCATGAAGGATTTGGGAA+TGG + chr4_4:39862296-39862315 Msa0680700:CDS 45.0%
CTCCATTCCCAAATCCTTCA+TGG - chr4_4:39862301-39862320 None:intergenic 45.0%
TGAAGGATTTGGGAATGGAG+AGG + chr4_4:39862301-39862320 Msa0680700:CDS 45.0%
GCAATGGGAGAAATGCTAGT+GGG + chr4_4:39862517-39862536 Msa0680700:CDS 45.0%
ACAAAGAACCTTTCCCTGGT+TGG + chr4_4:39862599-39862618 Msa0680700:CDS 45.0%
CAAAGAACCTTTCCCTGGTT+GGG + chr4_4:39862600-39862619 Msa0680700:CDS 45.0%
ATGCTTCCTTGCAGACTTAG+AGG + chr4_4:39862802-39862821 Msa0680700:CDS 45.0%
AAACTGCCTCTAAGTCTGCA+AGG - chr4_4:39862811-39862830 None:intergenic 45.0%
CATTCACCACCATATCAGCA+GGG - chr4_4:39863378-39863397 None:intergenic 45.0%
TATCACGTGGGTTCATCTGT+TGG + chr4_4:39863451-39863470 Msa0680700:CDS 45.0%
ATCACGTGGGTTCATCTGTT+GGG + chr4_4:39863452-39863471 Msa0680700:CDS 45.0%
CAACCAAACGCATCACAGTA+TGG - chr4_4:39864748-39864767 None:intergenic 45.0%
CCCAAAAATGATTGACTGGG+AGG + chr4_4:39865020-39865039 Msa0680700:CDS 45.0%
!! TAATAATTAAAGAAAATTAA+AGG - chr4_4:39862700-39862719 None:intergenic 5.0%
!!! AAATCATATTAATATTTTTT+AGG - chr4_4:39863105-39863124 None:intergenic 5.0%
!!! ACATAAAAAAAAAATATTTT+GGG - chr4_4:39864002-39864021 None:intergenic 5.0%
!!! TACATAAAAAAAAAATATTT+TGG - chr4_4:39864003-39864022 None:intergenic 5.0%
!!! GTTTTGGTACTTGGTGCTGC+TGG + chr4_4:39856961-39856980 Msa0680700:five_prime_UTR 50.0%
AAGATGGTGTCCACCCTTGT+CGG + chr4_4:39857498-39857517 Msa0680700:intron 50.0%
TACCGAGAGTAACCCGACAA+GGG - chr4_4:39857514-39857533 None:intergenic 50.0%
ATACCGAGAGTAACCCGACA+AGG - chr4_4:39857515-39857534 None:intergenic 50.0%
GATCATCTATTGCGGAACGG+AGG - chr4_4:39858215-39858234 None:intergenic 50.0%
ACCAAGTGAGCTATCCTCAC+GGG - chr4_4:39859144-39859163 None:intergenic 50.0%
! AGGTGAATAAGTGGGGTGTC+CGG - chr4_4:39859208-39859227 None:intergenic 50.0%
GGTGAATTTCTCTAGCCGCT+AGG + chr4_4:39859232-39859251 Msa0680700:intron 50.0%
AGCCACACCTCCTTGAATTG+TGG + chr4_4:39859378-39859397 Msa0680700:intron 50.0%
TGCCACAATTCAAGGAGGTG+TGG - chr4_4:39859383-39859402 None:intergenic 50.0%
! ATTTTCACACCCACCTCACG+TGG + chr4_4:39859576-39859595 Msa0680700:intron 50.0%
! TTTTCACACCCACCTCACGT+GGG + chr4_4:39859577-39859596 Msa0680700:intron 50.0%
GTGCTTGTCCACGTATCAAC+AGG + chr4_4:39860097-39860116 Msa0680700:CDS 50.0%
GACACGTGGCACCTCATTTA+GGG - chr4_4:39860850-39860869 None:intergenic 50.0%
TGACACGTGGCACCTCATTT+AGG - chr4_4:39860851-39860870 None:intergenic 50.0%
AGGGTCAGAACAGTGGTTGT+AGG + chr4_4:39861320-39861339 Msa0680700:intron 50.0%
CTTTAGTCCCTGAATGGGAG+AGG + chr4_4:39861484-39861503 Msa0680700:intron 50.0%
GACGAATCCTCTCCCATTCA+GGG - chr4_4:39861494-39861513 None:intergenic 50.0%
TGACGAATCCTCTCCCATTC+AGG - chr4_4:39861495-39861514 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG + chr4_4:39861549-39861568 Msa0680700:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG - chr4_4:39861555-39861574 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG + chr4_4:39861705-39861724 Msa0680700:intron 50.0%
GACGAATCCCTTCCGATTCA+GGG + chr4_4:39861706-39861725 Msa0680700:intron 50.0%
AGTGTCAGAAGTGGACCCAT+GGG - chr4_4:39861813-39861832 None:intergenic 50.0%
TAGTGTCAGAAGTGGACCCA+TGG - chr4_4:39861814-39861833 None:intergenic 50.0%
GCATACGTATGTGGAGAGAG+AGG + chr4_4:39862129-39862148 Msa0680700:intron 50.0%
TACGTATGTGGAGAGAGAGG+AGG + chr4_4:39862132-39862151 Msa0680700:CDS 50.0%
GAGAGGAGGACTGATAGTAG+AGG + chr4_4:39862146-39862165 Msa0680700:CDS 50.0%
GGCAATGGGAGAAATGCTAG+TGG + chr4_4:39862516-39862535 Msa0680700:CDS 50.0%
TTACTCCTTCGACCCAACCA+GGG - chr4_4:39862615-39862634 None:intergenic 50.0%
GAAGCAGATCCCTGCTGATA+TGG + chr4_4:39863366-39863385 Msa0680700:intron 50.0%
GCATTCACCACCATATCAGC+AGG - chr4_4:39863379-39863398 None:intergenic 50.0%
GGTGGTGAATGCAATGCTAG+TGG + chr4_4:39863387-39863406 Msa0680700:CDS 50.0%
GAATGCAATGCTAGTGGCCA+TGG + chr4_4:39863393-39863412 Msa0680700:CDS 50.0%
ATTTGGAAAACGTGCCCCAG+TGG + chr4_4:39864071-39864090 Msa0680700:intron 50.0%
! TCCCTATGAAATTGGTGGCC+CGG - chr4_4:39864458-39864477 None:intergenic 50.0%
GGCCACCAATTTCATAGGGA+CGG + chr4_4:39864458-39864477 Msa0680700:intron 50.0%
CAAGGCCGTCCCTATGAAAT+TGG - chr4_4:39864466-39864485 None:intergenic 50.0%
GGTCCATACTGTGATGCGTT+TGG + chr4_4:39864742-39864761 Msa0680700:CDS 50.0%
AGATGGTGTCCACCCTTGTC+GGG + chr4_4:39857499-39857518 Msa0680700:intron 55.0%
CACCCTTGTCGGGTTACTCT+CGG + chr4_4:39857509-39857528 Msa0680700:intron 55.0%
AAAAGTTGGAAGCCCCCGTG+AGG + chr4_4:39859127-39859146 Msa0680700:intron 55.0%
CAAGTGAGCTATCCTCACGG+GGG - chr4_4:39859142-39859161 None:intergenic 55.0%
CCAAGTGAGCTATCCTCACG+GGG - chr4_4:39859143-39859162 None:intergenic 55.0%
! GTGAATAAGTGGGGTGTCCG+GGG - chr4_4:39859206-39859225 None:intergenic 55.0%
! GGTGAATAAGTGGGGTGTCC+GGG - chr4_4:39859207-39859226 None:intergenic 55.0%
TTTCACACCCACCTCACGTG+GGG + chr4_4:39859578-39859597 Msa0680700:intron 55.0%
ATACGTGGACAAGCACCCTG+AGG - chr4_4:39860093-39860112 None:intergenic 55.0%
AAGTTTGAACCCCCTGCTCC+AGG - chr4_4:39860560-39860579 None:intergenic 55.0%
! GGGGCTGTAACCGCAAGTTT+TGG - chr4_4:39860956-39860975 None:intergenic 55.0%
CTGACGTGGCACCCTAAATG+AGG + chr4_4:39860836-39860855 Msa0680700:intron 55.0%
!! TTGACAGTTTTGGCCCCGCA+AGG - chr4_4:39860893-39860912 None:intergenic 55.0%
! GGGGCTGTAACCGCAAGTTT+TGG + chr4_4:39860956-39860975 Msa0680700:intron 55.0%
CTTACTCCTTCGACCCAACC+AGG - chr4_4:39862616-39862635 None:intergenic 55.0%
CTGGTTGGGTCGAAGGAGTA+AGG + chr4_4:39862614-39862633 Msa0680700:CDS 55.0%
GCAGATCCCTGCTGATATGG+TGG + chr4_4:39863369-39863388 Msa0680700:intron 55.0%
GAGCTATTTGCACCTCCCCA+GGG - chr4_4:39863949-39863968 None:intergenic 55.0%
AGAGCTATTTGCACCTCCCC+AGG - chr4_4:39863950-39863969 None:intergenic 55.0%
! AGCTGGGCCTCCCCAATTTT+AGG + chr4_4:39863974-39863993 Msa0680700:intron 55.0%
! GCTGGGCCTCCCCAATTTTA+GGG + chr4_4:39863975-39863994 Msa0680700:intron 55.0%
! CTGGGCCTCCCCAATTTTAG+GGG + chr4_4:39863976-39863995 Msa0680700:intron 55.0%
TTGGGCCCCTAAAATTGGGG+AGG - chr4_4:39863984-39864003 None:intergenic 55.0%
AGCCGGGCCACCAATTTCAT+AGG + chr4_4:39864453-39864472 Msa0680700:intron 55.0%
GCCGGGCCACCAATTTCATA+GGG + chr4_4:39864454-39864473 Msa0680700:intron 55.0%
GGCCGTCCCTATGAAATTGG+TGG - chr4_4:39864463-39864482 None:intergenic 55.0%
CGAGAGTAACCCGACAAGGG+TGG - chr4_4:39857511-39857530 None:intergenic 60.0%
CCCCGTGAGGATAGCTCACT+TGG + chr4_4:39859140-39859159 Msa0680700:intron 60.0%
GTTCCTGGCAACGCCACTGA+TGG - chr4_4:39860538-39860557 None:intergenic 60.0%
GTTGCCAGGAACCTGGAGCA+GGG + chr4_4:39860546-39860565 Msa0680700:intron 60.0%
TTGCCAGGAACCTGGAGCAG+GGG + chr4_4:39860547-39860566 Msa0680700:intron 60.0%
! TAGGGTGCCACGTCAGCGTT+GGG - chr4_4:39860832-39860851 None:intergenic 60.0%
! TTAGGGTGCCACGTCAGCGT+TGG - chr4_4:39860833-39860852 None:intergenic 60.0%
GTCAGAAGTGGACCCATGGG+CGG - chr4_4:39861810-39861829 None:intergenic 60.0%
CCTTCGACCCAACCAGGGAA+AGG - chr4_4:39862610-39862629 None:intergenic 60.0%
CCTTTCCCTGGTTGGGTCGA+AGG + chr4_4:39862607-39862626 Msa0680700:CDS 60.0%
CTGGATCCAGAGCTGTCCCT+GGG + chr4_4:39863930-39863949 Msa0680700:intron 60.0%
TGGATCCAGAGCTGTCCCTG+GGG + chr4_4:39863931-39863950 Msa0680700:intron 60.0%
TTCATAGGGACGGCCTTGCC+TGG + chr4_4:39864468-39864487 Msa0680700:intron 60.0%
CAAGCCTCCCCACGTGAGGT+GGG - chr4_4:39859588-39859607 None:intergenic 65.0%
TAGCCAAGCCTCCCCACGTG+AGG - chr4_4:39859592-39859611 None:intergenic 65.0%
GGTCCATCAGTGGCGTTGCC+AGG + chr4_4:39860532-39860551 Msa0680700:intron 65.0%
CAGTGGCGTTGCCAGGAACC+TGG + chr4_4:39860539-39860558 Msa0680700:intron 65.0%
CGTTGCCAGGAACCTGGAGC+AGG + chr4_4:39860545-39860564 Msa0680700:intron 65.0%
TGCCAGGAACCTGGAGCAGG+GGG + chr4_4:39860548-39860567 Msa0680700:intron 65.0%
AACCCCCTGCTCCAGGTTCC+TGG - chr4_4:39860553-39860572 None:intergenic 65.0%
TTTGGCCCCCAACGCTGACG+TGG + chr4_4:39860822-39860841 Msa0680700:intron 65.0%
! AGGGTGCCACGTCAGCGTTG+GGG - chr4_4:39860831-39860850 None:intergenic 65.0%
GGGGGTTCAACTGAACCCCC+TGG - chr4_4:39861771-39861790 None:intergenic 65.0%
!! CCAGGGACAGCTCTGGATCC+AGG - chr4_4:39863932-39863951 None:intergenic 65.0%
CCTGGATCCAGAGCTGTCCC+TGG + chr4_4:39863929-39863948 Msa0680700:intron 65.0%
ATCCAGAGCTGTCCCTGGGG+AGG + chr4_4:39863934-39863953 Msa0680700:intron 65.0%
AGGGGTCGGGGTTCGAACCC+CGG + chr4_4:39859186-39859205 Msa0680700:intron 70.0%
CACACCCACCTCACGTGGGG+AGG + chr4_4:39859581-39859600 Msa0680700:intron 70.0%
CCAAGCCTCCCCACGTGAGG+TGG - chr4_4:39859589-39859608 None:intergenic 70.0%
CCACCTCACGTGGGGAGGCT+TGG + chr4_4:39859586-39859605 Msa0680700:intron 70.0%
! GGGTGCCACGTCAGCGTTGG+GGG - chr4_4:39860830-39860849 None:intergenic 70.0%
CACCTCCCCAGGGACAGCTC+TGG - chr4_4:39863939-39863958 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 39856800 39865249 39856800 ID=Msa0680700;Name=Msa0680700
chr4_4 mRNA 39856800 39865249 39856800 ID=Msa0680700-mRNA-1;Parent=Msa0680700;Name=Msa0680700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=342|1|1|1|0.88|0.9|10|154|417
chr4_4 exon 39856800 39856997 39856800 ID=Msa0680700-mRNA-1:exon:9478;Parent=Msa0680700-mRNA-1
chr4_4 exon 39857115 39857218 39857115 ID=Msa0680700-mRNA-1:exon:9479;Parent=Msa0680700-mRNA-1
chr4_4 exon 39859687 39859890 39859687 ID=Msa0680700-mRNA-1:exon:9480;Parent=Msa0680700-mRNA-1
chr4_4 exon 39860018 39860118 39860018 ID=Msa0680700-mRNA-1:exon:9481;Parent=Msa0680700-mRNA-1
chr4_4 exon 39862130 39862322 39862130 ID=Msa0680700-mRNA-1:exon:9482;Parent=Msa0680700-mRNA-1
chr4_4 exon 39862474 39862635 39862474 ID=Msa0680700-mRNA-1:exon:9483;Parent=Msa0680700-mRNA-1
chr4_4 exon 39862757 39862838 39862757 ID=Msa0680700-mRNA-1:exon:9484;Parent=Msa0680700-mRNA-1
chr4_4 exon 39863373 39863642 39863373 ID=Msa0680700-mRNA-1:exon:9485;Parent=Msa0680700-mRNA-1
chr4_4 exon 39864674 39864801 39864674 ID=Msa0680700-mRNA-1:exon:9486;Parent=Msa0680700-mRNA-1
chr4_4 exon 39864942 39865249 39864942 ID=Msa0680700-mRNA-1:exon:9487;Parent=Msa0680700-mRNA-1
chr4_4 five_prime_UTR 39856800 39856997 39856800 ID=Msa0680700-mRNA-1:five_prime_utr;Parent=Msa0680700-mRNA-1
chr4_4 five_prime_UTR 39857115 39857218 39857115 ID=Msa0680700-mRNA-1:five_prime_utr;Parent=Msa0680700-mRNA-1
chr4_4 five_prime_UTR 39859687 39859726 39859687 ID=Msa0680700-mRNA-1:five_prime_utr;Parent=Msa0680700-mRNA-1
chr4_4 CDS 39859727 39859890 39859727 ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1
chr4_4 CDS 39860018 39860118 39860018 ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1
chr4_4 CDS 39862130 39862322 39862130 ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1
chr4_4 CDS 39862474 39862635 39862474 ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1
chr4_4 CDS 39862757 39862838 39862757 ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1
chr4_4 CDS 39863373 39863642 39863373 ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1
chr4_4 CDS 39864674 39864801 39864674 ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1
chr4_4 CDS 39864942 39865095 39864942 ID=Msa0680700-mRNA-1:cds;Parent=Msa0680700-mRNA-1
chr4_4 three_prime_UTR 39865096 39865249 39865096 ID=Msa0680700-mRNA-1:three_prime_utr;Parent=Msa0680700-mRNA-1
Gene Sequence

>Msa0680700

ATGGAGCAAAGTTCAATAGTTTTTATCTCTGAAAAAGTGACTCTAGTGCCTGGGGACATTTCCCAAGAAAATTTCAATTTGAAGGACTCCAATCTACTTCAAGAGTTATACAATCAAACTGATGTCATTGTGAATTTAGCTGCAACAACTAACTTTGATGAAAGATATGATGTAGCATTGGGTTTAAATACATTTGGAGTCAAGCATGTCTTAAACTTTGCCAAAAATTGTATTAACCTCAGGGTGCTTGTCCACGTATCAACAGCATACGTATGTGGAGAGAGAGGAGGACTGATAGTAGAGGATCCATACCAACTTGGTGTTTCACTAAATGGAGTGCAAGGACTAGACATTGATGAGGAAAAGAGAGTAGTTGAGGAGAAATTGAACATGCTTCAACAAGAGGGAGCTACTGAAAAGGATACTAAAATTGCCATGAAGGATTTGGGAATGGAGAGAGCAAAGTTATATGGATGGCCAAACACATATGTCTTTACAAAGGCAATGGGAGAAATGCTAGTGGGAACTATGAAGGAAAAATTGTCCATTGTTATTGTGAGACCTACAATCATTACCAGCACTTACAAAGAACCTTTCCCTGGTTGGGTCGAAGGAGTAAGAACCATAGACAGTTTAATTGTTGCATATGGTAAAGGAAAATTAACATGCTTCCTTGCAGACTTAGAGGCAGTTTTTGATGTGATCCCTGCTGATATGGTGGTGAATGCAATGCTAGTGGCCATGGTGAGTCATGCAAATCAACCTTGTGATGATAGCATATATCACGTGGGTTCATCTGTTGGGAATCCTGTGAGATATGAGAGTCTTAGAGACTACAGCTTCAGATATTTTACGGCAAAACCATGTTTTGACAAGGAAGGAAAAGCCATCAAAGTTGGCAAAGTTACAGTATTGGAAAACATGAATAGCTTTCAAAGATACATGTACATTCGTTACTTGCTTCCTTTAAAGGGGTTAGAGCTAGTCAATGCAGCATTTTGCCGCTATTTTCAAAGTACATGTTTTGATATCAGCAGAAAGGTCCATACTGTGATGCGTTTGGTTGAACTTTACAGGCCTTATGTGTTCTTCAATGGCGTATTTGATAATATGAATGCTGAGAAGTTGCAAATAGCAGCAAGACTAAGTGGAGTAGAGATGGATTTATTTTACTTTGACCCAAAAATGATTGACTGGGAGGACTATTTCATGAACATTCATATTCCTGGCATTGTCAAATATTCCTTCAAGTGA

Protein sequence

>Msa0680700

MEQSSIVFISEKVTLVPGDISQENFNLKDSNLLQELYNQTDVIVNLAATTNFDERYDVALGLNTFGVKHVLNFAKNCINLRVLVHVSTAYVCGERGGLIVEDPYQLGVSLNGVQGLDIDEEKRVVEEKLNMLQQEGATEKDTKIAMKDLGMERAKLYGWPNTYVFTKAMGEMLVGTMKEKLSIVIVRPTIITSTYKEPFPGWVEGVRTIDSLIVAYGKGKLTCFLADLEAVFDVIPADMVVNAMLVAMVSHANQPCDDSIYHVGSSVGNPVRYESLRDYSFRYFTAKPCFDKEGKAIKVGKVTVLENMNSFQRYMYIRYLLPLKGLELVNAAFCRYFQSTCFDISRKVHTVMRLVELYRPYVFFNGVFDNMNAEKLQIAARLSGVEMDLFYFDPKMIDWEDYFMNIHIPGIVKYSFK*