AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0003700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003700 MtrunA17_Chr1g0155251 99.381 646 1 1 1 646 1 643 0.0 1313
Msa0003700 MtrunA17_Chr5g0437031 88.633 651 66 2 1 646 1 648 0.0 1113
Msa0003700 MtrunA17_Chr3g0143991 44.681 94 47 3 539 630 25 115 2.63e-11 62.4
Msa0003700 MtrunA17_Chr7g0242251 43.750 80 41 2 554 632 47 123 7.60e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003700 AT3G28730.1 75.655 649 150 6 1 645 1 645 0.0 929
Msa0003700 AT3G51880.2 45.455 88 44 2 545 631 40 124 1.43e-13 70.1
Msa0003700 AT3G51880.4 45.455 88 44 2 545 631 40 124 1.81e-13 68.9
Msa0003700 AT3G51880.5 45.455 88 44 2 545 631 40 124 2.09e-13 69.3
Msa0003700 AT3G51880.1 45.455 88 44 2 545 631 40 124 2.09e-13 69.3
Msa0003700 AT3G51880.3 45.455 88 44 2 545 631 40 124 2.09e-13 69.3
Msa0003700 AT1G20693.3 46.835 79 38 2 553 630 33 108 1.87e-11 62.8
Msa0003700 AT1G20693.2 46.835 79 38 2 553 630 33 108 1.90e-11 62.8
Msa0003700 AT1G20693.1 46.835 79 38 2 553 630 33 108 1.91e-11 62.8

Find 207 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGTTGCCTTAATATTAA+TGG 0.236445 1_1:+6278708 Msa0003700:exon
ATCCTTCTTTGGTTCCTTCT+TGG 0.242213 1_1:-6278119 None:intergenic
GTCCTGCCCATGCAGTTCTA+AGG 0.253010 1_1:+6277345 Msa0003700:intron
TTACCAAGCCTGGAAAATTT+AGG 0.253732 1_1:+6276875 Msa0003700:CDS
CGGGAATACCATTAATATTA+AGG 0.257243 1_1:-6278716 None:intergenic
AGAAAGAGGTCCCACAATTT+TGG 0.272086 1_1:-6279141 None:intergenic
AGAATAAGAGTGGGAGGTTT+AGG 0.278835 1_1:-6276985 None:intergenic
AGGAAATATGCTGGCTTTCA+TGG 0.282409 1_1:+6275401 Msa0003700:intron
AAAGAAGGATTTGCCTTCTA+AGG 0.286151 1_1:+6278132 Msa0003700:CDS
CCGTGATAAAATAATGTCTA+TGG 0.288359 1_1:+6275896 Msa0003700:CDS
TTTCTGTTACTGGGCGCAAT+TGG 0.293918 1_1:+6274739 Msa0003700:CDS
TTAGAAGGCAAATCCTTCTT+TGG 0.294241 1_1:-6278130 None:intergenic
CAGTTACTCCGAAGGTGTTT+TGG 0.314648 1_1:-6274701 None:intergenic
GAGAAGCAACTTTCTGTTAC+TGG 0.317850 1_1:+6274729 Msa0003700:CDS
TTCTGTTACTGGGCGCAATT+GGG 0.318614 1_1:+6274740 Msa0003700:CDS
ATTCATTTCTCTGAATATTT+CGG 0.320481 1_1:-6277231 None:intergenic
CAACCCATGAATATTGATTC+AGG 0.326088 1_1:+6278666 Msa0003700:CDS
ACACCAAGTTGATTCGTCTT+TGG 0.335862 1_1:-6274398 None:intergenic
TTCTTTGGTTCCTTCTTGGC+AGG 0.345422 1_1:-6278115 None:intergenic
TAATCCTGGAATTTCATTTA+CGG 0.345587 1_1:+6278391 Msa0003700:CDS
CTTTCTAGACCCTGCTCATC+CGG 0.350701 1_1:+6279158 Msa0003700:three_prime_UTR
TCTTGGGCTTTGGCCTCATA+AGG 0.353348 1_1:-6278594 None:intergenic
GAAGAAACAGAAGAAGAAAA+AGG 0.353379 1_1:+6278207 Msa0003700:CDS
TTTCCCTTGAAGGTTTGTTT+GGG 0.354507 1_1:-6275466 None:intergenic
ATCTCAGAAAGATTCTTTGA+TGG 0.362156 1_1:+6275717 Msa0003700:intron
AAACCAGACAGTGCCCTCTT+AGG 0.362568 1_1:-6278241 None:intergenic
GATCTTCATCACCAACAAAC+TGG 0.364930 1_1:-6275771 None:intergenic
AATGAATACCACAATTTGTA+TGG 0.365076 1_1:+6277247 Msa0003700:CDS
ATTTCCTGAATCAATATTCA+TGG 0.371026 1_1:-6278670 None:intergenic
GGTTCTCCTACTGATGATTC+TGG 0.376502 1_1:+6277954 Msa0003700:CDS
TGTCGATTTACCGTTACAAT+AGG 0.381736 1_1:-6278824 None:intergenic
GATGCTGTTGTTACATTTGA+GGG 0.383536 1_1:+6275942 Msa0003700:CDS
AGTGCCCTCTTAGGTGCATT+TGG 0.384070 1_1:-6278232 None:intergenic
TTAGTCTTGATCCTCCTATT+CGG 0.386509 1_1:+6276383 Msa0003700:CDS
TTAGAAGTAGATGCCTTAGA+AGG 0.388977 1_1:-6278145 None:intergenic
TAACGGGCTGCTTGTTTGAA+TGG 0.396951 1_1:+6278908 Msa0003700:three_prime_UTR
TGGTAAGGACACTTGATAAA+GGG 0.401651 1_1:-6279203 None:intergenic
ATTACCTGCATCACGATATG+AGG 0.403729 1_1:-6276424 None:intergenic
CTATGTCCCCGGGGTTATAA+CGG 0.410143 1_1:+6278891 Msa0003700:three_prime_UTR
GGCGAACCACACTGCTGTAC+TGG 0.410835 1_1:-6276180 None:intergenic
GTTGATAAGGCGGACATAAC+GGG 0.414369 1_1:+6274356 Msa0003700:CDS
ATCACCAACAAACTGGGTAT+TGG 0.417370 1_1:-6275764 None:intergenic
ACAATATTGCGTGGTTTGTC+CGG 0.417906 1_1:+6276844 Msa0003700:CDS
CAATACATTACCTTGGTGTA+AGG 0.418775 1_1:-6275974 None:intergenic
GTTTGAGTGTTCTATGTCCC+CGG 0.420624 1_1:+6278880 Msa0003700:three_prime_UTR
ATTCACTGGTTTCCGTGATC+AGG 0.421922 1_1:+6274448 Msa0003700:CDS
TAAAACTGCAGCCAAGCAAT+CGG 0.425637 1_1:-6278736 None:intergenic
AAAGTCTGCCCTTTCCGAAT+AGG 0.427601 1_1:-6276397 None:intergenic
ATATTGTGGTAAACACTTCA+TGG 0.428597 1_1:-6276828 None:intergenic
GGCCACACCAACAGTTGGTT+GGG 0.430545 1_1:-6277395 None:intergenic
CGGTGCCGCCACGGCCGCCG+AGG 0.437836 1_1:-6273231 None:intergenic
AGTTCCAATACCCAGTTTGT+TGG 0.440167 1_1:+6275760 Msa0003700:CDS
ACGGACGTGGGAAGAGTACT+TGG 0.442183 1_1:+6278410 Msa0003700:CDS
TTGGTAAGGACACTTGATAA+AGG 0.442416 1_1:-6279204 None:intergenic
CTTGGTGTTCAGATCAAAGA+TGG 0.447302 1_1:+6274413 Msa0003700:CDS
TCCTGCCCATGCAGTTCTAA+GGG 0.450476 1_1:+6277346 Msa0003700:intron
TTTGTTCTCGACAAGGATGA+TGG 0.451598 1_1:+6277930 Msa0003700:CDS
GTCTCCCAAACAAACCTTCA+AGG 0.458044 1_1:+6275462 Msa0003700:CDS
ATTAATATTAAGGCAACCTT+AGG 0.458269 1_1:-6278706 None:intergenic
ACACCTTCGGAGTAACTGTT+GGG 0.460966 1_1:+6274706 Msa0003700:CDS
AGATGCTGTTGTTACATTTG+AGG 0.462575 1_1:+6275941 Msa0003700:CDS
AATCTAAAGAAAACTAATCC+TGG 0.464926 1_1:+6278377 Msa0003700:CDS
TGAAGATCGCCCTCCTGCTC+AGG 0.466330 1_1:+6275786 Msa0003700:CDS
TAATGGTATTCCCGATTGCT+TGG 0.467642 1_1:+6278725 Msa0003700:three_prime_UTR
ACTAAAGCTCCCGGATGAGC+AGG 0.468194 1_1:-6279168 None:intergenic
TGGAATTTCATTTACGGACG+TGG 0.473424 1_1:+6278397 Msa0003700:CDS
GGAGGCAAAGTTACCAAGCC+TGG 0.474637 1_1:+6276865 Msa0003700:CDS
TGTTGATAAGGCGGACATAA+CGG 0.474692 1_1:+6274355 Msa0003700:CDS
TTATTGGTGCTGCAGAATCC+GGG 0.475067 1_1:+6274269 Msa0003700:intron
TTGAATGGCTTGAGGAAGGC+TGG 0.475918 1_1:+6278923 Msa0003700:three_prime_UTR
TGGGGAGAAGTTGATCTAAA+CGG 0.476817 1_1:+6274759 Msa0003700:CDS
TTATGTGGTTGAAAGTGAAT+TGG 0.478915 1_1:+6276550 Msa0003700:CDS
CAAATCAATTGATGTTGATA+AGG 0.479324 1_1:+6274343 Msa0003700:CDS
TTTGAGTGTTCTATGTCCCC+GGG 0.479327 1_1:+6278881 Msa0003700:three_prime_UTR
AACATTACCCTCGGCGGCCG+TGG 0.480494 1_1:+6273223 Msa0003700:CDS
TATGTCCCCGGGGTTATAAC+GGG 0.482750 1_1:+6278892 Msa0003700:three_prime_UTR
GAATCAATATTCATGGGTTG+AGG 0.486272 1_1:-6278663 None:intergenic
TGGCCACACCAACAGTTGGT+TGG 0.488815 1_1:-6277396 None:intergenic
TTTCATTTCAGGAAATATGC+TGG 0.489570 1_1:+6275392 Msa0003700:intron
AGGCTTGGTAACTTTGCCTC+CGG 0.495486 1_1:-6276863 None:intergenic
ACAGACAAACTCACCTGAGC+AGG 0.497300 1_1:-6275799 None:intergenic
AGTTTCTTCCAAAACACCTT+CGG 0.497818 1_1:+6274693 Msa0003700:CDS
CAGATTTGAGTCTGATAAGA+AGG 0.497842 1_1:-6277192 None:intergenic
TTTCACGTGGATGACACAAC+TGG 0.498298 1_1:+6275507 Msa0003700:CDS
CACTCTTATTCTTCATGAAG+AGG 0.498347 1_1:+6276996 Msa0003700:CDS
GCACCTAAGAGGGCACTGTC+TGG 0.501489 1_1:+6278238 Msa0003700:CDS
AGAAGCAACTTTCTGTTACT+GGG 0.502319 1_1:+6274730 Msa0003700:CDS
GGGTTGTTCTACAAATTCAC+TGG 0.502970 1_1:+6274434 Msa0003700:CDS
AGGATCCAAATGCACCTAAG+AGG 0.505192 1_1:+6278227 Msa0003700:CDS
CTTCCAGAAACCTGCCAAGA+AGG 0.506566 1_1:+6278105 Msa0003700:intron
TGCCAAGAAGGAACCAAAGA+AGG 0.508120 1_1:+6278117 Msa0003700:CDS
TCTATGGCTGATGTTGGTGC+TGG 0.508943 1_1:+6275912 Msa0003700:CDS
TTTCTGATGCGCTCGAGATG+TGG 0.509278 1_1:-6277454 None:intergenic
CCTCTGTCTCACCACCACTT+TGG 0.510686 1_1:-6277998 None:intergenic
TCATCTTTGAAAGCTGAAGA+TGG 0.512966 1_1:+6276925 Msa0003700:CDS
GGAGGAGAAGGAACCTTATG+AGG 0.513515 1_1:+6278581 Msa0003700:CDS
AATATGCTGGCTTTCATGGT+TGG 0.513596 1_1:+6275405 Msa0003700:CDS
ACGTCCGTAAATGAAATTCC+AGG 0.513793 1_1:-6278395 None:intergenic
CAAGTTGGAGCTGTCTTACA+AGG 0.514183 1_1:+6276610 Msa0003700:CDS
GTACCCTCATATCGTGATGC+AGG 0.515876 1_1:+6276420 Msa0003700:CDS
CTGCTTGTTTGAATGGCTTG+AGG 0.516394 1_1:+6278915 Msa0003700:three_prime_UTR
ACAAACTGGGTATTGGAACT+TGG 0.516545 1_1:-6275757 None:intergenic
TTGTTTGAATGGCTTGAGGA+AGG 0.518576 1_1:+6278919 Msa0003700:three_prime_UTR
TTTCCTGAATCAATATTCAT+GGG 0.520202 1_1:-6278669 None:intergenic
GGGTATTGGAACTTGGTACA+TGG 0.520299 1_1:-6275750 None:intergenic
AAGTATCCCTTGTCAAGGTA+TGG 0.521130 1_1:+6279104 Msa0003700:three_prime_UTR
AGGAAGGCTGGAGAAGGATG+AGG 0.522393 1_1:+6278935 Msa0003700:three_prime_UTR
GTAGTTTGAAACTGATTATG+TGG 0.523537 1_1:+6276535 Msa0003700:intron
TTCCTACTAGATTGACTATG+TGG 0.523757 1_1:+6277123 Msa0003700:intron
ATTACCCTCGGCGGCCGTGG+CGG 0.524515 1_1:+6273226 Msa0003700:CDS
AAAACTGCAGCCAAGCAATC+GGG 0.526477 1_1:-6278735 None:intergenic
CTCAAAGTACAAAGACAAGT+TGG 0.526767 1_1:+6276595 Msa0003700:CDS
ACCAACTGTTGGTGTGGCCA+AGG 0.529642 1_1:+6277399 Msa0003700:CDS
CGGACATAACGGGCGTAACA+TGG 0.530617 1_1:+6274366 Msa0003700:CDS
AATGAATCTGACAGTGCCTA+AGG 0.531097 1_1:+6278690 Msa0003700:CDS
ATGGCTGATGTTGGTGCTGG+AGG 0.532027 1_1:+6275915 Msa0003700:CDS
TGATAAAACCATACAAATTG+TGG 0.532500 1_1:-6277255 None:intergenic
GTAATTCAGTAATAACATAC+TGG 0.532948 1_1:+6278993 Msa0003700:three_prime_UTR
TTTCTAGACCCTGCTCATCC+GGG 0.534065 1_1:+6279159 Msa0003700:three_prime_UTR
TTGATCCTCCTATTCGGAAA+GGG 0.536206 1_1:+6276389 Msa0003700:CDS
CTCTTCAACAACATTACCCT+CGG 0.540205 1_1:+6273214 Msa0003700:CDS
ATGCAATACACCAAAATTGT+GGG 0.542628 1_1:+6279131 Msa0003700:three_prime_UTR
GGTGCCGCCACGGCCGCCGA+GGG 0.543217 1_1:-6273230 None:intergenic
GAATTTGAGCGACATGCTGC+TGG 0.545421 1_1:+6277145 Msa0003700:CDS
AACACCTTCGGAGTAACTGT+TGG 0.545941 1_1:+6274705 Msa0003700:CDS
CATGCAATACACCAAAATTG+TGG 0.547983 1_1:+6279130 Msa0003700:three_prime_UTR
AAATTTAGGAGTTGTCAAGA+TGG 0.550659 1_1:+6276889 Msa0003700:CDS
ATCTTCATCACCAACAAACT+GGG 0.552179 1_1:-6275770 None:intergenic
GGCTTGAGGAAGGCTGGAGA+AGG 0.552278 1_1:+6278929 Msa0003700:three_prime_UTR
TTGATATTTCTTAAATGTGG+TGG 0.556537 1_1:+6278796 Msa0003700:three_prime_UTR
GAAAGAAGAAGCTCTTCTCA+AGG 0.556630 1_1:-6276960 None:intergenic
AAGCAGCCCGTTATAACCCC+GGG 0.558730 1_1:-6278898 None:intergenic
GGATCCAAATGCACCTAAGA+GGG 0.559964 1_1:+6278228 Msa0003700:CDS
ACATGGTGCACTAAAGCTCC+CGG 0.562056 1_1:-6279177 None:intergenic
AAAGAAGAAGCTCTTCTCAA+GGG 0.564045 1_1:-6276959 None:intergenic
GTTCTTATCAAGTATCTGAT+CGG 0.564175 1_1:+6279029 Msa0003700:three_prime_UTR
TCTCTTTCTCGCCACCATGA+CGG 0.565013 1_1:+6273183 Msa0003700:exon
GTCTGCCCTTTCCGAATAGG+AGG 0.565917 1_1:-6276394 None:intergenic
GTTCCAAAGACGAATCAACT+TGG 0.567452 1_1:+6274395 Msa0003700:CDS
GACAAACTCACCTGAGCAGG+AGG 0.567937 1_1:-6275796 None:intergenic
TGACACAACTGGAGCAAATG+AGG 0.569007 1_1:+6275518 Msa0003700:CDS
ACCTTGGCCACACCAACAGT+TGG 0.570641 1_1:-6277400 None:intergenic
GAGCGCATCAGAAATGAAGC+TGG 0.571748 1_1:+6277463 Msa0003700:CDS
ATCATCATTCTCAAGCACCT+TGG 0.580790 1_1:-6277416 None:intergenic
CTTGATCCTCCTATTCGGAA+AGG 0.581438 1_1:+6276388 Msa0003700:CDS
TCAATACACAGCGGAGGAGA+AGG 0.582588 1_1:+6278569 Msa0003700:intron
CACTTGATAAAGGGGCAACA+TGG 0.585823 1_1:-6279194 None:intergenic
TTGTCTCTGCACACTGAGAG+AGG 0.586134 1_1:-6273132 None:intergenic
AACGGGCGTAACATGGATGA+AGG 0.587136 1_1:+6274373 Msa0003700:CDS
CTCTTCATGAAGAATAAGAG+TGG 0.590015 1_1:-6276995 None:intergenic
ACTTGATAAGAACCACTAGC+AGG 0.590226 1_1:-6279019 None:intergenic
TCTGTTACTGGGCGCAATTG+GGG 0.591812 1_1:+6274741 Msa0003700:CDS
GGTAAGGACACTTGATAAAG+GGG 0.594577 1_1:-6279202 None:intergenic
GATGAGCAGGGTCTAGAAAG+AGG 0.595240 1_1:-6279155 None:intergenic
TCTCCCAAACAAACCTTCAA+GGG 0.596624 1_1:+6275463 Msa0003700:CDS
ATCAATTGATGTTGATAAGG+CGG 0.597783 1_1:+6274346 Msa0003700:CDS
CAAGCAGCCCGTTATAACCC+CGG 0.597907 1_1:-6278899 None:intergenic
CGCATCAGAAATGAAGCTGG+TGG 0.603857 1_1:+6277466 Msa0003700:CDS
CTAAAGCTCCCGGATGAGCA+GGG 0.606043 1_1:-6279167 None:intergenic
GGACAAACCACGCAATATTG+TGG 0.607048 1_1:-6276842 None:intergenic
TTATGGAAGAGACAGGGAGG+TGG 0.608219 1_1:+6274320 Msa0003700:CDS
ATATTGCGTGGTTTGTCCGG+AGG 0.609437 1_1:+6276847 Msa0003700:CDS
AAGAAGAAGCTCTTCTCAAG+GGG 0.618644 1_1:-6276958 None:intergenic
TGTCTCTGCACACTGAGAGA+GGG 0.619084 1_1:-6273131 None:intergenic
GGAATTTCATTTACGGACGT+GGG 0.619820 1_1:+6278398 Msa0003700:CDS
TCAAAAGATGCTGATGACGA+AGG 0.621100 1_1:+6278175 Msa0003700:CDS
CATGCAGCCATACCTTGACA+AGG 0.621264 1_1:-6279111 None:intergenic
GAGAGCTTACGGTGCCGCCA+CGG 0.622395 1_1:-6273240 None:intergenic
GGTGGTATCTCCTATTGTAA+CGG 0.623791 1_1:+6278814 Msa0003700:three_prime_UTR
TTGGTGTTCAGATCAAAGAT+GGG 0.623826 1_1:+6274414 Msa0003700:CDS
CTCCCCAACAGTTACTCCGA+AGG 0.624094 1_1:-6274709 None:intergenic
ACATACTGGTTACCTGCTAG+TGG 0.626603 1_1:+6279007 Msa0003700:three_prime_UTR
TCATGAAGAATAAGAGTGGG+AGG 0.627094 1_1:-6276991 None:intergenic
TTTGAGCGACATGCTGCTGG+TGG 0.628138 1_1:+6277148 Msa0003700:CDS
GACTCTGATGCTAGCCAAAG+TGG 0.628895 1_1:+6277984 Msa0003700:CDS
TGCCCAACCAACTGTTGGTG+TGG 0.630617 1_1:+6277393 Msa0003700:CDS
GTTCTCGACAAGGATGATGG+AGG 0.634483 1_1:+6277933 Msa0003700:CDS
GAAGAGATGACCGTCCGTCA+TGG 0.634783 1_1:-6273197 None:intergenic
ATATCAAGTATCCCTTGTCA+AGG 0.635243 1_1:+6279099 Msa0003700:three_prime_UTR
CCAAAGTGGTGGTGAGACAG+AGG 0.637450 1_1:+6277998 Msa0003700:CDS
TATTGGTGCTGCAGAATCCG+GGG 0.638125 1_1:+6274270 Msa0003700:intron
CTAATAATGACGAAGGTATG+CGG 0.638553 1_1:-6276364 None:intergenic
GACGGAGAACTACCTGATCA+CGG 0.641013 1_1:-6274460 None:intergenic
ATCAAGACTAATAATGACGA+AGG 0.641692 1_1:-6276371 None:intergenic
TCTTCATGAAGAATAAGAGT+GGG 0.642579 1_1:-6276994 None:intergenic
ATAATGTCTATGGCTGATGT+TGG 0.645958 1_1:+6275906 Msa0003700:CDS
TTTCTCGCCACCATGACGGA+CGG 0.646406 1_1:+6273187 Msa0003700:exon
GCGCTCGAGATGTGGATCGA+CGG 0.648144 1_1:-6277446 None:intergenic
GTGTTTACCACAATATTGCG+TGG 0.650738 1_1:+6276835 Msa0003700:CDS
GCTGATGCCCAACCAACTGT+TGG 0.651825 1_1:+6277388 Msa0003700:CDS
TTACCTGCATCACGATATGA+GGG 0.656286 1_1:-6276423 None:intergenic
AAAGATGCTGATGACGAAGG+AGG 0.658535 1_1:+6278178 Msa0003700:CDS
TCTGCACCAGAATCATCAGT+AGG 0.661015 1_1:-6277960 None:intergenic
CGTTACAAGGATGAGATGAG+TGG 0.662650 1_1:+6278627 Msa0003700:CDS
CACCTTCGGAGTAACTGTTG+GGG 0.674663 1_1:+6274707 Msa0003700:CDS
GAGATGACCGTCCGTCATGG+TGG 0.684087 1_1:-6273194 None:intergenic
ACAAACTCACCTGAGCAGGA+GGG 0.692093 1_1:-6275795 None:intergenic
CAAAATCCAGTACAGCAGTG+TGG 0.693832 1_1:+6276174 Msa0003700:CDS
TGGTGGAGATGAAAGTGACG+AGG 0.704697 1_1:+6277483 Msa0003700:CDS
ATGCAGCCATACCTTGACAA+GGG 0.710672 1_1:-6279110 None:intergenic
TGTGATGTTGGAGTTTCACG+TGG 0.716384 1_1:+6275494 Msa0003700:CDS
TTGAGTGTTCTATGTCCCCG+GGG 0.746581 1_1:+6278882 Msa0003700:three_prime_UTR
TCTGATGCTAGCCAAAGTGG+TGG 0.752107 1_1:+6277987 Msa0003700:CDS
TGGAGATGAAAGTGACGAGG+AGG 0.754949 1_1:+6277486 Msa0003700:CDS
TTCAACAACATTACCCTCGG+CGG 0.763342 1_1:+6273217 Msa0003700:CDS
GTATTGCAATCCTTACACCA+AGG 0.765044 1_1:+6275964 Msa0003700:CDS
AGCAGCCCGTTATAACCCCG+GGG 0.772409 1_1:-6278897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTAGAGTTTTTTTTA+TGG + chr1_1:6277091-6277110 Msa0003700:intron 10.0%
!! AGTAGATTTATTGAAAAAAA+TGG + chr1_1:6273512-6273531 Msa0003700:intron 15.0%
!! GTAGATTTATTGAAAAAAAT+GGG + chr1_1:6273513-6273532 Msa0003700:intron 15.0%
!! AAAATAATAATGAAAAGATG+AGG + chr1_1:6274173-6274192 Msa0003700:intron 15.0%
!! TACACTTATATTTGTATTAT+TGG + chr1_1:6274253-6274272 Msa0003700:intron 15.0%
!!! AAATATCTTTGAAAATAGTA+GGG - chr1_1:6274957-6274976 None:intergenic 15.0%
!!! TAAATATCTTTGAAAATAGT+AGG - chr1_1:6274958-6274977 None:intergenic 15.0%
!!! GGTATATATATATATAGTTT+TGG + chr1_1:6275539-6275558 Msa0003700:intron 15.0%
!! TATATTAAAAACAAAAAGCA+AGG - chr1_1:6276237-6276256 None:intergenic 15.0%
!! AAAAGGAATTACAAAAGTTA+GGG - chr1_1:6273339-6273358 None:intergenic 20.0%
!! AAAAAGGAATTACAAAAGTT+AGG - chr1_1:6273340-6273359 None:intergenic 20.0%
!! AAATTAGGGATTAACAAAAA+TGG - chr1_1:6273412-6273431 None:intergenic 20.0%
!!! ATAAGTTTTGTAAGACTATT+TGG - chr1_1:6274050-6274069 None:intergenic 20.0%
!! AACATGTAAATACATATTCA+GGG - chr1_1:6274487-6274506 None:intergenic 20.0%
!! AAACATGTAAATACATATTC+AGG - chr1_1:6274488-6274507 None:intergenic 20.0%
!! ATCAAACACATAAATTTACT+CGG - chr1_1:6274858-6274877 None:intergenic 20.0%
!! TAAAAATGGGTACAAAAAAA+CGG - chr1_1:6275072-6275091 None:intergenic 20.0%
!! AATAGAACCAACTTAAAAAT+GGG - chr1_1:6275085-6275104 None:intergenic 20.0%
!! AAATAGAACCAACTTAAAAA+TGG - chr1_1:6275086-6275105 None:intergenic 20.0%
!!! TAAGTTGGTTCTATTTTTTT+TGG + chr1_1:6275090-6275109 Msa0003700:intron 20.0%
!!! AAGTTGGTTCTATTTTTTTT+GGG + chr1_1:6275091-6275110 Msa0003700:intron 20.0%
!! GAAATGAAAATAGAAACATA+AGG - chr1_1:6275381-6275400 None:intergenic 20.0%
!!! TATGTTTCTATTTTCATTTC+AGG + chr1_1:6275381-6275400 Msa0003700:intron 20.0%
!!! TGACATTTGTAAAATCATTT+TGG + chr1_1:6275862-6275881 Msa0003700:intron 20.0%
!!! TGTAAAATCATTTTGGTATT+AGG + chr1_1:6275869-6275888 Msa0003700:intron 20.0%
!! TAATTCACTATTCAATAATC+AGG + chr1_1:6276798-6276817 Msa0003700:intron 20.0%
!! AATTCACTATTCAATAATCA+GGG + chr1_1:6276799-6276818 Msa0003700:intron 20.0%
!! ATTCATTTCTCTGAATATTT+CGG - chr1_1:6277234-6277253 None:intergenic 20.0%
!!! CAAATATGTGTGATAAATTT+TGG - chr1_1:6277300-6277319 None:intergenic 20.0%
!!! TGCTTTTGTATATGTTAAAT+TGG + chr1_1:6277882-6277901 Msa0003700:intron 20.0%
!! AATATAATAGGCTAAGATTA+TGG - chr1_1:6278511-6278530 None:intergenic 20.0%
!! CACAAACACAAAAATATAAT+AGG - chr1_1:6278523-6278542 None:intergenic 20.0%
!!! GTTTTGATATTTCTTAAATG+TGG + chr1_1:6278793-6278812 Msa0003700:three_prime_UTR 20.0%
!!! AGGGTTTATGATTTTGAAAA+AGG - chr1_1:6273356-6273375 None:intergenic 25.0%
! AAATCATAAACCCTAATACT+AGG + chr1_1:6273362-6273381 Msa0003700:intron 25.0%
! AATCATAAACCCTAATACTA+GGG + chr1_1:6273363-6273382 Msa0003700:intron 25.0%
!! AATCACACTTTACACATTTT+TGG - chr1_1:6273601-6273620 None:intergenic 25.0%
! TGAAAACAACTTATGAACAA+TGG + chr1_1:6273868-6273887 Msa0003700:intron 25.0%
! CAGATAAAAATATATTCTGG+AGG + chr1_1:6274293-6274312 Msa0003700:CDS 25.0%
!!! TATATTCTGGAGGAATTTTA+TGG + chr1_1:6274303-6274322 Msa0003700:CDS 25.0%
! CAAATCAATTGATGTTGATA+AGG + chr1_1:6274343-6274362 Msa0003700:CDS 25.0%
! ACATGTAAATACATATTCAG+GGG - chr1_1:6274486-6274505 None:intergenic 25.0%
!!! CATGTTTTTGATGTTGAAAA+AGG + chr1_1:6274501-6274520 Msa0003700:intron 25.0%
! GAAAAAGGAATTCAATTGTT+TGG + chr1_1:6274516-6274535 Msa0003700:intron 25.0%
!!! ACGTTTTATACTTATTTTGC+AGG + chr1_1:6274653-6274672 Msa0003700:intron 25.0%
! GAGTAAATTTATGTGTTTGA+TGG + chr1_1:6274857-6274876 Msa0003700:intron 25.0%
! ATGTTTGACATCGTTTATAA+TGG + chr1_1:6274885-6274904 Msa0003700:intron 25.0%
!! AATTACCCTGAATTTTACAA+AGG - chr1_1:6275016-6275035 None:intergenic 25.0%
! TTCCTTATAAAAAGAAACAC+CGG + chr1_1:6275035-6275054 Msa0003700:intron 25.0%
!!! TTTTGTACCCATTTTTAAGT+TGG + chr1_1:6275075-6275094 Msa0003700:intron 25.0%
! TCTAATGAATTGATACAGTT+TGG + chr1_1:6275566-6275585 Msa0003700:intron 25.0%
!!! TTTTGGAATTGCGTTTTTTA+TGG + chr1_1:6275673-6275692 Msa0003700:intron 25.0%
! ATCTTGTTACAGCAAATTAT+AGG + chr1_1:6275835-6275854 Msa0003700:intron 25.0%
!!! CCATAGACATTATTTTATCA+CGG - chr1_1:6275899-6275918 None:intergenic 25.0%
!! AGATCAATCTTTTTCTTGAA+AGG - chr1_1:6276067-6276086 None:intergenic 25.0%
!!! AATTACACTTGTCATTTTTG+CGG + chr1_1:6276128-6276147 Msa0003700:CDS 25.0%
! AAACCTTAGGAAGTAAAAAT+AGG - chr1_1:6276204-6276223 None:intergenic 25.0%
! AAAAACAAAAAGCAAGGATT+AGG - chr1_1:6276231-6276250 None:intergenic 25.0%
! AAAGAATCAATTTACATGTG+TGG - chr1_1:6276273-6276292 None:intergenic 25.0%
!!! TGTAAATTGATTCTTTTCTC+TGG + chr1_1:6276277-6276296 Msa0003700:intron 25.0%
!!! TTGACTAAACTGTTGATAAT+TGG + chr1_1:6276635-6276654 Msa0003700:intron 25.0%
!!! TGACTAAACTGTTGATAATT+GGG + chr1_1:6276636-6276655 Msa0003700:intron 25.0%
! ATTCACTATTCAATAATCAG+GGG + chr1_1:6276800-6276819 Msa0003700:intron 25.0%
!! GAAACTAACATTTGGTATTT+TGG - chr1_1:6277048-6277067 None:intergenic 25.0%
!! AAATACCAAATGTTAGTTTC+TGG + chr1_1:6277048-6277067 Msa0003700:intron 25.0%
! AATGAATACCACAATTTGTA+TGG + chr1_1:6277247-6277266 Msa0003700:CDS 25.0%
! TGATAAAACCATACAAATTG+TGG - chr1_1:6277258-6277277 None:intergenic 25.0%
!!! ACAATTTGTATGGTTTTATC+AGG + chr1_1:6277257-6277276 Msa0003700:CDS 25.0%
! TGTTCTAATTTAAGTGATTG+AGG + chr1_1:6277584-6277603 Msa0003700:intron 25.0%
! TAGATATATTCAAATGAGGT+TGG - chr1_1:6277629-6277648 None:intergenic 25.0%
! TGCTTAGATATATTCAAATG+AGG - chr1_1:6277633-6277652 None:intergenic 25.0%
! AATCTAAAGAAAACTAATCC+TGG + chr1_1:6278377-6278396 Msa0003700:CDS 25.0%
! TAATCCTGGAATTTCATTTA+CGG + chr1_1:6278391-6278410 Msa0003700:CDS 25.0%
! AGAAAAATGGAAAAATCTGT+CGG + chr1_1:6278433-6278452 Msa0003700:CDS 25.0%
! TTTCCTGAATCAATATTCAT+GGG - chr1_1:6278672-6278691 None:intergenic 25.0%
! ATTTCCTGAATCAATATTCA+TGG - chr1_1:6278673-6278692 None:intergenic 25.0%
! ATTAATATTAAGGCAACCTT+AGG - chr1_1:6278709-6278728 None:intergenic 25.0%
! TAAGGTTGCCTTAATATTAA+TGG + chr1_1:6278708-6278727 Msa0003700:exon 25.0%
! TTGATATTTCTTAAATGTGG+TGG + chr1_1:6278796-6278815 Msa0003700:three_prime_UTR 25.0%
! GTAATTCAGTAATAACATAC+TGG + chr1_1:6278993-6279012 Msa0003700:three_prime_UTR 25.0%
GGTTATTCAAAAAGAGGAAA+TGG - chr1_1:6273318-6273337 None:intergenic 30.0%
AGTTAGGGTTATTCAAAAAG+AGG - chr1_1:6273324-6273343 None:intergenic 30.0%
TAGAGAAAACCCTAGTATTA+GGG - chr1_1:6273375-6273394 None:intergenic 30.0%
ATAGAGAAAACCCTAGTATT+AGG - chr1_1:6273376-6273395 None:intergenic 30.0%
ACAAATTGCACACAATAACT+AGG - chr1_1:6273656-6273675 None:intergenic 30.0%
ATAAGCTGATTATCCAAACA+GGG - chr1_1:6273702-6273721 None:intergenic 30.0%
TAAGCGCATATCATGATAAA+TGG - chr1_1:6273743-6273762 None:intergenic 30.0%
GCTGTTTATGTATGCTATAT+TGG + chr1_1:6273826-6273845 Msa0003700:intron 30.0%
!! TCAACTAACGTAAGTTTTGT+GGG - chr1_1:6273905-6273924 None:intergenic 30.0%
! ATCAACTAACGTAAGTTTTG+TGG - chr1_1:6273906-6273925 None:intergenic 30.0%
! AGTGTTTTCATTAGCTATCT+TGG + chr1_1:6273958-6273977 Msa0003700:intron 30.0%
!! GAATATATTTTTATCTGCCC+CGG - chr1_1:6274290-6274309 None:intergenic 30.0%
GGGCAGATAAAAATATATTC+TGG + chr1_1:6274290-6274309 Msa0003700:CDS 30.0%
! ATCAATTGATGTTGATAAGG+CGG + chr1_1:6274346-6274365 Msa0003700:CDS 30.0%
CATGTAAATACATATTCAGG+GGG - chr1_1:6274485-6274504 None:intergenic 30.0%
AGGAATTCAATTGTTTGGTT+TGG + chr1_1:6274521-6274540 Msa0003700:intron 30.0%
! TTGGTCAAAGTGTTAATCAA+AGG - chr1_1:6274572-6274591 None:intergenic 30.0%
CAAATCATCAACGTTTAGAT+TGG - chr1_1:6274591-6274610 None:intergenic 30.0%
!! CAATCTAAACGTTGATGATT+TGG + chr1_1:6274589-6274608 Msa0003700:intron 30.0%
!! AAACGTTGATGATTTGGATT+TGG + chr1_1:6274595-6274614 Msa0003700:intron 30.0%
TAAGTATAAAACGTCAACAC+AGG - chr1_1:6274647-6274666 None:intergenic 30.0%
AAATTTACTCGGAGTATAGT+AGG - chr1_1:6274847-6274866 None:intergenic 30.0%
CACTCAAAATACAAACTGAA+TGG - chr1_1:6274988-6275007 None:intergenic 30.0%
TCCTTATAAAAAGAAACACC+GGG + chr1_1:6275036-6275055 Msa0003700:intron 30.0%
AAAGTGAGAAGTTGTTAAGA+TGG + chr1_1:6275183-6275202 Msa0003700:intron 30.0%
AAGTTGTTAAGATGGAAATG+TGG + chr1_1:6275191-6275210 Msa0003700:intron 30.0%
AGTTGTTAAGATGGAAATGT+GGG + chr1_1:6275192-6275211 Msa0003700:intron 30.0%
!!! AAATGTGGGTTCTTTTTTTC+AGG + chr1_1:6275206-6275225 Msa0003700:intron 30.0%
!!! AATGTGGGTTCTTTTTTTCA+GGG + chr1_1:6275207-6275226 Msa0003700:intron 30.0%
TCAAAAAGATCCACCATAAA+GGG - chr1_1:6275311-6275330 None:intergenic 30.0%
ATCAAAAAGATCCACCATAA+AGG - chr1_1:6275312-6275331 None:intergenic 30.0%
!!! TTTATGGTGGATCTTTTTGA+TGG + chr1_1:6275311-6275330 Msa0003700:intron 30.0%
TTTCATTTCAGGAAATATGC+TGG + chr1_1:6275392-6275411 Msa0003700:intron 30.0%
ATCTCAGAAAGATTCTTTGA+TGG + chr1_1:6275717-6275736 Msa0003700:intron 30.0%
CCGTGATAAAATAATGTCTA+TGG + chr1_1:6275896-6275915 Msa0003700:CDS 30.0%
TGTTGTACAATACATTACCT+TGG - chr1_1:6275984-6276003 None:intergenic 30.0%
! AAATTTGCTTTATTGTGCAG+AGG + chr1_1:6276091-6276110 Msa0003700:intron 30.0%
ATCAAGACTAATAATGACGA+AGG - chr1_1:6276374-6276393 None:intergenic 30.0%
! GTAGTTTGAAACTGATTATG+TGG + chr1_1:6276535-6276554 Msa0003700:intron 30.0%
TTATGTGGTTGAAAGTGAAT+TGG + chr1_1:6276550-6276569 Msa0003700:CDS 30.0%
!!! AAGGGCATATTTTAGTTGAT+TGG + chr1_1:6276713-6276732 Msa0003700:intron 30.0%
!!! GCATATTTTAGTTGATTGGT+TGG + chr1_1:6276717-6276736 Msa0003700:intron 30.0%
ATATTGTGGTAAACACTTCA+TGG - chr1_1:6276831-6276850 None:intergenic 30.0%
AAATTTAGGAGTTGTCAAGA+TGG + chr1_1:6276889-6276908 Msa0003700:CDS 30.0%
TCTTCATGAAGAATAAGAGT+GGG - chr1_1:6276997-6277016 None:intergenic 30.0%
ATCAACCAGAAACTAACATT+TGG - chr1_1:6277056-6277075 None:intergenic 30.0%
ATAGTCAATCTAGTAGGAAA+TGG - chr1_1:6277122-6277141 None:intergenic 30.0%
! CTTTATTCATGAGTAGCTTT+TGG + chr1_1:6277553-6277572 Msa0003700:intron 30.0%
! GTCTACTTACATTTCAGTTT+TGG + chr1_1:6277684-6277703 Msa0003700:intron 30.0%
AATTGGTGTAAAATGTCTAC+AGG + chr1_1:6277899-6277918 Msa0003700:intron 30.0%
ACCTCTACTCTTTAAATCTT+TGG + chr1_1:6278055-6278074 Msa0003700:intron 30.0%
ACCAAAGATTTAAAGAGTAG+AGG - chr1_1:6278059-6278078 None:intergenic 30.0%
GAAGAAACAGAAGAAGAAAA+AGG + chr1_1:6278207-6278226 Msa0003700:CDS 30.0%
! TTTCATGTTCTTTTCTCAGA+TGG + chr1_1:6278261-6278280 Msa0003700:CDS 30.0%
GTACATACATATTAGTGATG+TGG + chr1_1:6278306-6278325 Msa0003700:intron 30.0%
GAAAAATGGAAAAATCTGTC+GGG + chr1_1:6278434-6278453 Msa0003700:CDS 30.0%
ATGGAACTGCAATGAAATAA+TGG - chr1_1:6278472-6278491 None:intergenic 30.0%
ATGCAAAGAAACAGAAAACT+TGG - chr1_1:6278547-6278566 None:intergenic 30.0%
!! GTAACGCTTTTTATCTTCTT+GGG - chr1_1:6278613-6278632 None:intergenic 30.0%
!! TGTAACGCTTTTTATCTTCT+TGG - chr1_1:6278614-6278633 None:intergenic 30.0%
!! AGAAGATAAAAAGCGTTACA+AGG + chr1_1:6278614-6278633 Msa0003700:CDS 30.0%
CGGGAATACCATTAATATTA+AGG - chr1_1:6278719-6278738 None:intergenic 30.0%
GTTCTTATCAAGTATCTGAT+CGG + chr1_1:6279029-6279048 Msa0003700:three_prime_UTR 30.0%
ATGCAATACACCAAAATTGT+GGG + chr1_1:6279131-6279150 Msa0003700:three_prime_UTR 30.0%
TAAGAAGGGGAAAAAAGATT+TGG - chr1_1:6279226-6279245 None:intergenic 30.0%
TGAGGAAAGAAGATCGAAAA+TGG - chr1_1:6273287-6273306 None:intergenic 35.0%
TCAAAAAGAGGAAATGGTGA+AGG - chr1_1:6273312-6273331 None:intergenic 35.0%
! ACAATAACTAGGTTTGAAGC+TGG - chr1_1:6273645-6273664 None:intergenic 35.0%
TAAGCTGATTATCCAAACAG+GGG - chr1_1:6273701-6273720 None:intergenic 35.0%
GATAAGCTGATTATCCAAAC+AGG - chr1_1:6273703-6273722 None:intergenic 35.0%
TCATTAGCTGTTATGTGTCA+AGG + chr1_1:6274118-6274137 Msa0003700:intron 35.0%
! AGGAATTTTATGGAAGAGAC+AGG + chr1_1:6274313-6274332 Msa0003700:CDS 35.0%
! GGAATTTTATGGAAGAGACA+GGG + chr1_1:6274314-6274333 Msa0003700:CDS 35.0%
! TTGGTGTTCAGATCAAAGAT+GGG + chr1_1:6274414-6274433 Msa0003700:CDS 35.0%
TAAATACATATTCAGGGGGA+CGG - chr1_1:6274481-6274500 None:intergenic 35.0%
!! TTCAATTGTTTGGTTTGGCT+TGG + chr1_1:6274526-6274545 Msa0003700:intron 35.0%
AGTTTCTTCCAAAACACCTT+CGG + chr1_1:6274693-6274712 Msa0003700:CDS 35.0%
AGAAGCAACTTTCTGTTACT+GGG + chr1_1:6274730-6274749 Msa0003700:CDS 35.0%
! TACCCTGAATTTTACAAAGG+CGG - chr1_1:6275013-6275032 None:intergenic 35.0%
TGATGTAACAACCAGATTGA+AGG - chr1_1:6275152-6275171 None:intergenic 35.0%
AAATGCAGTCTTTCCCTTTA+TGG + chr1_1:6275295-6275314 Msa0003700:intron 35.0%
!! CTGACTTGACTGCTTTTATA+CGG + chr1_1:6275336-6275355 Msa0003700:intron 35.0%
! TTTCCCTTGAAGGTTTGTTT+GGG - chr1_1:6275469-6275488 None:intergenic 35.0%
!! TTTTCCCTTGAAGGTTTGTT+TGG - chr1_1:6275470-6275489 None:intergenic 35.0%
!! TCACATCATTTTTCCCTTGA+AGG - chr1_1:6275479-6275498 None:intergenic 35.0%
AGGGAAAAATGATGTGATGT+TGG + chr1_1:6275482-6275501 Msa0003700:CDS 35.0%
ATACTATTCAAGCCCAAGTT+TGG - chr1_1:6275629-6275648 None:intergenic 35.0%
TTGGGCTTGAATAGTATTGT+AGG + chr1_1:6275632-6275651 Msa0003700:intron 35.0%
TATTGTAGGCTGCAGTTAAT+AGG + chr1_1:6275646-6275665 Msa0003700:intron 35.0%
! TGCAGTTAATAGGCTCATTT+TGG + chr1_1:6275656-6275675 Msa0003700:intron 35.0%
ATCTTCATCACCAACAAACT+GGG - chr1_1:6275773-6275792 None:intergenic 35.0%
ATAATGTCTATGGCTGATGT+TGG + chr1_1:6275906-6275925 Msa0003700:CDS 35.0%
AGATGCTGTTGTTACATTTG+AGG + chr1_1:6275941-6275960 Msa0003700:CDS 35.0%
GATGCTGTTGTTACATTTGA+GGG + chr1_1:6275942-6275961 Msa0003700:CDS 35.0%
! CAATACATTACCTTGGTGTA+AGG - chr1_1:6275977-6275996 None:intergenic 35.0%
!!! TCGCCTATTTTTACTTCCTA+AGG + chr1_1:6276198-6276217 Msa0003700:CDS 35.0%
AGGATTAGGAGATAAACCTT+AGG - chr1_1:6276217-6276236 None:intergenic 35.0%
! CTAATAATGACGAAGGTATG+CGG - chr1_1:6276367-6276386 None:intergenic 35.0%
!! TTAGTCTTGATCCTCCTATT+CGG + chr1_1:6276383-6276402 Msa0003700:CDS 35.0%
! CAGGTAATGTTTTACTTCGT+TGG + chr1_1:6276439-6276458 Msa0003700:intron 35.0%
CAGTTTCAAACTACACAGAA+AGG - chr1_1:6276529-6276548 None:intergenic 35.0%
CTCAAAGTACAAAGACAAGT+TGG + chr1_1:6276595-6276614 Msa0003700:CDS 35.0%
!! AGCTGCTTTGGAAATGAAAA+AGG + chr1_1:6276694-6276713 Msa0003700:intron 35.0%
!! GCTGCTTTGGAAATGAAAAA+GGG + chr1_1:6276695-6276714 Msa0003700:intron 35.0%
TTACCAAGCCTGGAAAATTT+AGG + chr1_1:6276875-6276894 Msa0003700:CDS 35.0%
! TGACAACTCCTAAATTTTCC+AGG - chr1_1:6276886-6276905 None:intergenic 35.0%
! TCATCTTTGAAAGCTGAAGA+TGG + chr1_1:6276925-6276944 Msa0003700:CDS 35.0%
AAAGAAGAAGCTCTTCTCAA+GGG - chr1_1:6276962-6276981 None:intergenic 35.0%
CTCTTCATGAAGAATAAGAG+TGG - chr1_1:6276998-6277017 None:intergenic 35.0%
CACTCTTATTCTTCATGAAG+AGG + chr1_1:6276996-6277015 Msa0003700:CDS 35.0%
TTCCTACTAGATTGACTATG+TGG + chr1_1:6277123-6277142 Msa0003700:intron 35.0%
TTCCACATAGTCAATCTAGT+AGG - chr1_1:6277128-6277147 None:intergenic 35.0%
CAGATTTGAGTCTGATAAGA+AGG - chr1_1:6277195-6277214 None:intergenic 35.0%
CAAGTAGTCAAGTACAGATT+AGG - chr1_1:6277514-6277533 None:intergenic 35.0%
GCTACTCATGAATAAAGAAG+AGG - chr1_1:6277550-6277569 None:intergenic 35.0%
! TTCAGATTTTGTTCTCGACA+AGG + chr1_1:6277923-6277942 Msa0003700:CDS 35.0%
AGATTTAAAGAGTAGAGGTG+AGG - chr1_1:6278054-6278073 None:intergenic 35.0%
! TGGTCATCATTAAGGTGTTA+CGG - chr1_1:6278084-6278103 None:intergenic 35.0%
TTAGAAGGCAAATCCTTCTT+TGG - chr1_1:6278133-6278152 None:intergenic 35.0%
AAAGAAGGATTTGCCTTCTA+AGG + chr1_1:6278132-6278151 Msa0003700:CDS 35.0%
TTAGAAGTAGATGCCTTAGA+AGG - chr1_1:6278148-6278167 None:intergenic 35.0%
!! GAAGAGTACTTGGAGAAAAA+TGG + chr1_1:6278420-6278439 Msa0003700:CDS 35.0%
TTTGCATGTTCAATACACAG+CGG + chr1_1:6278560-6278579 Msa0003700:intron 35.0%
! CTTTTTATCTTCTTGGGCTT+TGG - chr1_1:6278607-6278626 None:intergenic 35.0%
! GAATCAATATTCATGGGTTG+AGG - chr1_1:6278666-6278685 None:intergenic 35.0%
!! CAACCCATGAATATTGATTC+AGG + chr1_1:6278666-6278685 Msa0003700:CDS 35.0%
!! TGTCGATTTACCGTTACAAT+AGG - chr1_1:6278827-6278846 None:intergenic 35.0%
! GGTAAATCGACAGAGTTTTA+TGG + chr1_1:6278835-6278854 Msa0003700:three_prime_UTR 35.0%
ATATCAAGTATCCCTTGTCA+AGG + chr1_1:6279099-6279118 Msa0003700:three_prime_UTR 35.0%
CATGCAATACACCAAAATTG+TGG + chr1_1:6279130-6279149 Msa0003700:three_prime_UTR 35.0%
TGGTAAGGACACTTGATAAA+GGG - chr1_1:6279206-6279225 None:intergenic 35.0%
TTGGTAAGGACACTTGATAA+AGG - chr1_1:6279207-6279226 None:intergenic 35.0%
! AGGGGAAAAAAGATTTGGTA+AGG - chr1_1:6279221-6279240 None:intergenic 35.0%
CTCTTCAACAACATTACCCT+CGG + chr1_1:6273214-6273233 Msa0003700:CDS 40.0%
AAACAGGGGCTAATACTAGA+TGG - chr1_1:6273687-6273706 None:intergenic 40.0%
ATCTAGTATTAGCCCCTGTT+TGG + chr1_1:6273686-6273705 Msa0003700:intron 40.0%
! TGAAACACTCAGAGCTTGTT+TGG - chr1_1:6274101-6274120 None:intergenic 40.0%
!! ATTATTGGTGCTGCAGAATC+CGG + chr1_1:6274268-6274287 Msa0003700:intron 40.0%
! ATTTTATGGAAGAGACAGGG+AGG + chr1_1:6274317-6274336 Msa0003700:CDS 40.0%
! TGTTGATAAGGCGGACATAA+CGG + chr1_1:6274355-6274374 Msa0003700:CDS 40.0%
GTTCCAAAGACGAATCAACT+TGG + chr1_1:6274395-6274414 Msa0003700:CDS 40.0%
!! ACACCAAGTTGATTCGTCTT+TGG - chr1_1:6274401-6274420 None:intergenic 40.0%
!! CTTGGTGTTCAGATCAAAGA+TGG + chr1_1:6274413-6274432 Msa0003700:CDS 40.0%
GGGTTGTTCTACAAATTCAC+TGG + chr1_1:6274434-6274453 Msa0003700:CDS 40.0%
!! TTGTTTGGTTTGGCTTGGTT+TGG + chr1_1:6274531-6274550 Msa0003700:intron 40.0%
GAGAAGCAACTTTCTGTTAC+TGG + chr1_1:6274729-6274748 Msa0003700:CDS 40.0%
! TGGGGAGAAGTTGATCTAAA+CGG + chr1_1:6274759-6274778 Msa0003700:CDS 40.0%
! GAGAAGTTGATCTAAACGGT+TGG + chr1_1:6274763-6274782 Msa0003700:intron 40.0%
CACCGCCTTTGTAAAATTCA+GGG + chr1_1:6275008-6275027 Msa0003700:intron 40.0%
! GCCCGGTGTTTCTTTTTATA+AGG - chr1_1:6275040-6275059 None:intergenic 40.0%
AACAACCAGATTGAAGGTAG+TGG - chr1_1:6275146-6275165 None:intergenic 40.0%
!!! TGGGTTCTTTTTTTCAGGGT+GGG + chr1_1:6275211-6275230 Msa0003700:intron 40.0%
CTCATTCATGCTTTCTTCTC+TGG + chr1_1:6275266-6275285 Msa0003700:intron 40.0%
TTATACGGCTATACTACCAG+TGG + chr1_1:6275351-6275370 Msa0003700:intron 40.0%
AGAAACATAAGGACATCCAC+TGG - chr1_1:6275370-6275389 None:intergenic 40.0%
!! AGGAAATATGCTGGCTTTCA+TGG + chr1_1:6275401-6275420 Msa0003700:intron 40.0%
!! AATATGCTGGCTTTCATGGT+TGG + chr1_1:6275405-6275424 Msa0003700:CDS 40.0%
! TGGTTCAAAGCAAGCTTTTG+AGG + chr1_1:6275425-6275444 Msa0003700:CDS 40.0%
TCTCCCAAACAAACCTTCAA+GGG + chr1_1:6275463-6275482 Msa0003700:CDS 40.0%
AAACCTTCCTCATCCAAACT+TGG + chr1_1:6275613-6275632 Msa0003700:intron 40.0%
AACCTTCCTCATCCAAACTT+GGG + chr1_1:6275614-6275633 Msa0003700:intron 40.0%
!! ACAAACTGGGTATTGGAACT+TGG - chr1_1:6275760-6275779 None:intergenic 40.0%
AGTTCCAATACCCAGTTTGT+TGG + chr1_1:6275760-6275779 Msa0003700:CDS 40.0%
ATCACCAACAAACTGGGTAT+TGG - chr1_1:6275767-6275786 None:intergenic 40.0%
GATCTTCATCACCAACAAAC+TGG - chr1_1:6275774-6275793 None:intergenic 40.0%
GTATTGCAATCCTTACACCA+AGG + chr1_1:6275964-6275983 Msa0003700:CDS 40.0%
!!! TTGTCATTTTTGCGGCTTCA+GGG + chr1_1:6276136-6276155 Msa0003700:CDS 40.0%
TGACAGCTTATCATGTCTGT+TGG + chr1_1:6276316-6276335 Msa0003700:intron 40.0%
TTGATCCTCCTATTCGGAAA+GGG + chr1_1:6276389-6276408 Msa0003700:CDS 40.0%
TTACCTGCATCACGATATGA+GGG - chr1_1:6276426-6276445 None:intergenic 40.0%
ATTACCTGCATCACGATATG+AGG - chr1_1:6276427-6276446 None:intergenic 40.0%
! GAAAGGAGCACAACATTGTT+AGG - chr1_1:6276512-6276531 None:intergenic 40.0%
! GATTGGTTGGTGTGAGAATT+TGG + chr1_1:6276730-6276749 Msa0003700:intron 40.0%
! TGTGAGAATTTGGTAACTCG+TGG + chr1_1:6276740-6276759 Msa0003700:intron 40.0%
! GTGAGAATTTGGTAACTCGT+GGG + chr1_1:6276741-6276760 Msa0003700:intron 40.0%
GTGTTTACCACAATATTGCG+TGG + chr1_1:6276835-6276854 Msa0003700:CDS 40.0%
! ACAATATTGCGTGGTTTGTC+CGG + chr1_1:6276844-6276863 Msa0003700:CDS 40.0%
! ACTCCTAAATTTTCCAGGCT+TGG - chr1_1:6276881-6276900 None:intergenic 40.0%
AAGAAGAAGCTCTTCTCAAG+GGG - chr1_1:6276961-6276980 None:intergenic 40.0%
GAAAGAAGAAGCTCTTCTCA+AGG - chr1_1:6276963-6276982 None:intergenic 40.0%
AGAATAAGAGTGGGAGGTTT+AGG - chr1_1:6276988-6277007 None:intergenic 40.0%
TCATGAAGAATAAGAGTGGG+AGG - chr1_1:6276994-6277013 None:intergenic 40.0%
TGGTTATCAGCAAAAGCAAC+TGG - chr1_1:6277028-6277047 None:intergenic 40.0%
ATCATCATTCTCAAGCACCT+TGG - chr1_1:6277419-6277438 None:intergenic 40.0%
AAAGGGATAGATGGACAAAC+AGG - chr1_1:6277755-6277774 None:intergenic 40.0%
GACAAACTGAAAGGGATAGA+TGG - chr1_1:6277764-6277783 None:intergenic 40.0%
! GAGAGCATGACAAACTGAAA+GGG - chr1_1:6277772-6277791 None:intergenic 40.0%
! AGAGAGCATGACAAACTGAA+AGG - chr1_1:6277773-6277792 None:intergenic 40.0%
CTCTGTATTGCTTACTGTTG+TGG + chr1_1:6277789-6277808 Msa0003700:intron 40.0%
TGTCATATGCGTATGTCTTG+TGG + chr1_1:6277821-6277840 Msa0003700:intron 40.0%
GTCATATGCGTATGTCTTGT+GGG + chr1_1:6277822-6277841 Msa0003700:intron 40.0%
TTTGTTCTCGACAAGGATGA+TGG + chr1_1:6277930-6277949 Msa0003700:CDS 40.0%
! CTGGAAGTTGGTCATCATTA+AGG - chr1_1:6278092-6278111 None:intergenic 40.0%
! TCAAAAGATGCTGATGACGA+AGG + chr1_1:6278175-6278194 Msa0003700:CDS 40.0%
! CTTTTCTCAGATGGAAAGAG+AGG + chr1_1:6278270-6278289 Msa0003700:CDS 40.0%
ACGTCCGTAAATGAAATTCC+AGG - chr1_1:6278398-6278417 None:intergenic 40.0%
TGGAATTTCATTTACGGACG+TGG + chr1_1:6278397-6278416 Msa0003700:CDS 40.0%
GGAATTTCATTTACGGACGT+GGG + chr1_1:6278398-6278417 Msa0003700:CDS 40.0%
ATGGAAAAATCTGTCGGGTA+TGG + chr1_1:6278439-6278458 Msa0003700:CDS 40.0%
TGGTCACAAATGACACTAGA+TGG - chr1_1:6278491-6278510 None:intergenic 40.0%
AATGAATCTGACAGTGCCTA+AGG + chr1_1:6278690-6278709 Msa0003700:CDS 40.0%
TAATGGTATTCCCGATTGCT+TGG + chr1_1:6278725-6278744 Msa0003700:three_prime_UTR 40.0%
TAAAACTGCAGCCAAGCAAT+CGG - chr1_1:6278739-6278758 None:intergenic 40.0%
GGTGGTATCTCCTATTGTAA+CGG + chr1_1:6278814-6278833 Msa0003700:three_prime_UTR 40.0%
TTGTTTGAATGGCTTGAGGA+AGG + chr1_1:6278919-6278938 Msa0003700:three_prime_UTR 40.0%
ACTTGATAAGAACCACTAGC+AGG - chr1_1:6279022-6279041 None:intergenic 40.0%
AAGTATCCCTTGTCAAGGTA+TGG + chr1_1:6279104-6279123 Msa0003700:three_prime_UTR 40.0%
! AGAAAGAGGTCCCACAATTT+TGG - chr1_1:6279144-6279163 None:intergenic 40.0%
GGTAAGGACACTTGATAAAG+GGG - chr1_1:6279205-6279224 None:intergenic 40.0%
TTCAACAACATTACCCTCGG+CGG + chr1_1:6273217-6273236 Msa0003700:CDS 45.0%
AGAGAGAGAGAGAGAGCTTA+CGG - chr1_1:6273254-6273273 None:intergenic 45.0%
GAGGAAATGGTGAAGGTTTG+AGG - chr1_1:6273305-6273324 None:intergenic 45.0%
! CACTCAGAGCTTGTTTGGAT+TGG - chr1_1:6274096-6274115 None:intergenic 45.0%
!! TTATTGGTGCTGCAGAATCC+GGG + chr1_1:6274269-6274288 Msa0003700:intron 45.0%
! GTTGATAAGGCGGACATAAC+GGG + chr1_1:6274356-6274375 Msa0003700:CDS 45.0%
!! ATTCACTGGTTTCCGTGATC+AGG + chr1_1:6274448-6274467 Msa0003700:CDS 45.0%
!!! CAGTTACTCCGAAGGTGTTT+TGG - chr1_1:6274704-6274723 None:intergenic 45.0%
AACACCTTCGGAGTAACTGT+TGG + chr1_1:6274705-6274724 Msa0003700:CDS 45.0%
ACACCTTCGGAGTAACTGTT+GGG + chr1_1:6274706-6274725 Msa0003700:CDS 45.0%
TTTCTGTTACTGGGCGCAAT+TGG + chr1_1:6274739-6274758 Msa0003700:CDS 45.0%
TTCTGTTACTGGGCGCAATT+GGG + chr1_1:6274740-6274759 Msa0003700:CDS 45.0%
ATGGCAGCATCATGAAGACA+TGG + chr1_1:6274904-6274923 Msa0003700:intron 45.0%
GCACCGCCTTTGTAAAATTC+AGG + chr1_1:6275007-6275026 Msa0003700:intron 45.0%
AAAAACGGCAGATAACTGCC+CGG - chr1_1:6275057-6275076 None:intergenic 45.0%
AAGCACCACTACCTTCAATC+TGG + chr1_1:6275138-6275157 Msa0003700:intron 45.0%
!!! GTGGGTTCTTTTTTTCAGGG+TGG + chr1_1:6275210-6275229 Msa0003700:intron 45.0%
!!! GGGTTCTTTTTTTCAGGGTG+GGG + chr1_1:6275212-6275231 Msa0003700:intron 45.0%
!!! TCTTTTTTTCAGGGTGGGGA+TGG + chr1_1:6275216-6275235 Msa0003700:intron 45.0%
!!! CTTTTTTTCAGGGTGGGGAT+GGG + chr1_1:6275217-6275236 Msa0003700:intron 45.0%
!!! TTTTTTTCAGGGTGGGGATG+GGG + chr1_1:6275218-6275237 Msa0003700:intron 45.0%
! ATGGGGTTTGCTTCTCAAAC+AGG + chr1_1:6275235-6275254 Msa0003700:intron 45.0%
TGCAGTCTTTCCCTTTATGG+TGG + chr1_1:6275298-6275317 Msa0003700:intron 45.0%
GTCTCCCAAACAAACCTTCA+AGG + chr1_1:6275462-6275481 Msa0003700:CDS 45.0%
TGTGATGTTGGAGTTTCACG+TGG + chr1_1:6275494-6275513 Msa0003700:CDS 45.0%
TTTCACGTGGATGACACAAC+TGG + chr1_1:6275507-6275526 Msa0003700:CDS 45.0%
TGACACAACTGGAGCAAATG+AGG + chr1_1:6275518-6275537 Msa0003700:CDS 45.0%
! AGTTTGGAACAACTTGCAGC+TGG + chr1_1:6275582-6275601 Msa0003700:intron 45.0%
TTCAAGCCCAAGTTTGGATG+AGG - chr1_1:6275623-6275642 None:intergenic 45.0%
!! GGGTATTGGAACTTGGTACA+TGG - chr1_1:6275753-6275772 None:intergenic 45.0%
GACACAATCGAACAGAAGCA+TGG - chr1_1:6276045-6276064 None:intergenic 45.0%
!!! CTTGTCATTTTTGCGGCTTC+AGG + chr1_1:6276135-6276154 Msa0003700:CDS 45.0%
CAAAATCCAGTACAGCAGTG+TGG + chr1_1:6276174-6276193 Msa0003700:CDS 45.0%
CTTGATCCTCCTATTCGGAA+AGG + chr1_1:6276388-6276407 Msa0003700:CDS 45.0%
AAAGTCTGCCCTTTCCGAAT+AGG - chr1_1:6276400-6276419 None:intergenic 45.0%
! CAAGTTGGAGCTGTCTTACA+AGG + chr1_1:6276610-6276629 Msa0003700:CDS 45.0%
CATTTCCAAAGCAGCTCTTG+AGG - chr1_1:6276690-6276709 None:intergenic 45.0%
GGACAAACCACGCAATATTG+TGG - chr1_1:6276845-6276864 None:intergenic 45.0%
TCAAGCCCTTAGAACTGCAT+GGG - chr1_1:6277354-6277373 None:intergenic 45.0%
TTCAAGCCCTTAGAACTGCA+TGG - chr1_1:6277355-6277374 None:intergenic 45.0%
ATATGCGTATGTCTTGTGGG+AGG + chr1_1:6277825-6277844 Msa0003700:intron 45.0%
GGTTCTCCTACTGATGATTC+TGG + chr1_1:6277954-6277973 Msa0003700:CDS 45.0%
TCTGCACCAGAATCATCAGT+AGG - chr1_1:6277963-6277982 None:intergenic 45.0%
! AAAGATGCTGATGACGAAGG+AGG + chr1_1:6278178-6278197 Msa0003700:CDS 45.0%
AGGATCCAAATGCACCTAAG+AGG + chr1_1:6278227-6278246 Msa0003700:CDS 45.0%
GGATCCAAATGCACCTAAGA+GGG + chr1_1:6278228-6278247 Msa0003700:CDS 45.0%
AAAAATCTGTCGGGTATGGC+TGG + chr1_1:6278443-6278462 Msa0003700:CDS 45.0%
CGTTACAAGGATGAGATGAG+TGG + chr1_1:6278627-6278646 Msa0003700:CDS 45.0%
AAAACTGCAGCCAAGCAATC+GGG - chr1_1:6278738-6278757 None:intergenic 45.0%
GTTTGAGTGTTCTATGTCCC+CGG + chr1_1:6278880-6278899 Msa0003700:three_prime_UTR 45.0%
TTTGAGTGTTCTATGTCCCC+GGG + chr1_1:6278881-6278900 Msa0003700:three_prime_UTR 45.0%
!! TAACGGGCTGCTTGTTTGAA+TGG + chr1_1:6278908-6278927 Msa0003700:three_prime_UTR 45.0%
CTGCTTGTTTGAATGGCTTG+AGG + chr1_1:6278915-6278934 Msa0003700:three_prime_UTR 45.0%
! ACATACTGGTTACCTGCTAG+TGG + chr1_1:6279007-6279026 Msa0003700:three_prime_UTR 45.0%
ATGCAGCCATACCTTGACAA+GGG - chr1_1:6279113-6279132 None:intergenic 45.0%
CACTTGATAAAGGGGCAACA+TGG - chr1_1:6279197-6279216 None:intergenic 45.0%
!! AATTACAATAATAAAAATTA+GGG - chr1_1:6273426-6273445 None:intergenic 5.0%
!! TAATTACAATAATAAAAATT+AGG - chr1_1:6273427-6273446 None:intergenic 5.0%
TGTCTCTGCACACTGAGAGA+GGG - chr1_1:6273134-6273153 None:intergenic 50.0%
TTGTCTCTGCACACTGAGAG+AGG - chr1_1:6273135-6273154 None:intergenic 50.0%
TCTCTTTCTCGCCACCATGA+CGG + chr1_1:6273183-6273202 Msa0003700:exon 50.0%
!! TATTGGTGCTGCAGAATCCG+GGG + chr1_1:6274270-6274289 Msa0003700:intron 50.0%
TTATGGAAGAGACAGGGAGG+TGG + chr1_1:6274320-6274339 Msa0003700:CDS 50.0%
AACGGGCGTAACATGGATGA+AGG + chr1_1:6274373-6274392 Msa0003700:CDS 50.0%
GACGGAGAACTACCTGATCA+CGG - chr1_1:6274463-6274482 None:intergenic 50.0%
CACCTTCGGAGTAACTGTTG+GGG + chr1_1:6274707-6274726 Msa0003700:CDS 50.0%
TCTGTTACTGGGCGCAATTG+GGG + chr1_1:6274741-6274760 Msa0003700:CDS 50.0%
AGCCCAAGTTTGGATGAGGA+AGG - chr1_1:6275619-6275638 None:intergenic 50.0%
ACAAACTCACCTGAGCAGGA+GGG - chr1_1:6275798-6275817 None:intergenic 50.0%
ACAGACAAACTCACCTGAGC+AGG - chr1_1:6275802-6275821 None:intergenic 50.0%
TCTATGGCTGATGTTGGTGC+TGG + chr1_1:6275912-6275931 Msa0003700:CDS 50.0%
! ATTTTTGCGGCTTCAGGGAC+AGG + chr1_1:6276141-6276160 Msa0003700:CDS 50.0%
GTACCCTCATATCGTGATGC+AGG + chr1_1:6276420-6276439 Msa0003700:CDS 50.0%
CTCTTGAGGAGCAGTATCTC+AGG - chr1_1:6276676-6276695 None:intergenic 50.0%
! ATATTGCGTGGTTTGTCCGG+AGG + chr1_1:6276847-6276866 Msa0003700:CDS 50.0%
! AGGCTTGGTAACTTTGCCTC+CGG - chr1_1:6276866-6276885 None:intergenic 50.0%
GAATTTGAGCGACATGCTGC+TGG + chr1_1:6277145-6277164 Msa0003700:CDS 50.0%
! TCCTGCCCATGCAGTTCTAA+GGG + chr1_1:6277346-6277365 Msa0003700:intron 50.0%
TTTCTGATGCGCTCGAGATG+TGG - chr1_1:6277457-6277476 None:intergenic 50.0%
GAGCGCATCAGAAATGAAGC+TGG + chr1_1:6277463-6277482 Msa0003700:CDS 50.0%
CGCATCAGAAATGAAGCTGG+TGG + chr1_1:6277466-6277485 Msa0003700:CDS 50.0%
TGGTGGAGATGAAAGTGACG+AGG + chr1_1:6277483-6277502 Msa0003700:CDS 50.0%
TGGAGATGAAAGTGACGAGG+AGG + chr1_1:6277486-6277505 Msa0003700:CDS 50.0%
! GTTCTCGACAAGGATGATGG+AGG + chr1_1:6277933-6277952 Msa0003700:CDS 50.0%
GACTCTGATGCTAGCCAAAG+TGG + chr1_1:6277984-6278003 Msa0003700:CDS 50.0%
TCTGATGCTAGCCAAAGTGG+TGG + chr1_1:6277987-6278006 Msa0003700:CDS 50.0%
! CTTGGCAGGTTTCTGGAAGT+TGG - chr1_1:6278104-6278123 None:intergenic 50.0%
CTTCCAGAAACCTGCCAAGA+AGG + chr1_1:6278105-6278124 Msa0003700:intron 50.0%
AGTGCCCTCTTAGGTGCATT+TGG - chr1_1:6278235-6278254 None:intergenic 50.0%
AAACCAGACAGTGCCCTCTT+AGG - chr1_1:6278244-6278263 None:intergenic 50.0%
GCATGTTCAATACACAGCGG+AGG + chr1_1:6278563-6278582 Msa0003700:intron 50.0%
TCAATACACAGCGGAGGAGA+AGG + chr1_1:6278569-6278588 Msa0003700:intron 50.0%
GGAGGAGAAGGAACCTTATG+AGG + chr1_1:6278581-6278600 Msa0003700:CDS 50.0%
! TCTTGGGCTTTGGCCTCATA+AGG - chr1_1:6278597-6278616 None:intergenic 50.0%
TTGAGTGTTCTATGTCCCCG+GGG + chr1_1:6278882-6278901 Msa0003700:three_prime_UTR 50.0%
CTATGTCCCCGGGGTTATAA+CGG + chr1_1:6278891-6278910 Msa0003700:three_prime_UTR 50.0%
TATGTCCCCGGGGTTATAAC+GGG + chr1_1:6278892-6278911 Msa0003700:three_prime_UTR 50.0%
TTGAATGGCTTGAGGAAGGC+TGG + chr1_1:6278923-6278942 Msa0003700:three_prime_UTR 50.0%
CATGCAGCCATACCTTGACA+AGG - chr1_1:6279114-6279133 None:intergenic 50.0%
GATGAGCAGGGTCTAGAAAG+AGG - chr1_1:6279158-6279177 None:intergenic 50.0%
CTTTCTAGACCCTGCTCATC+CGG + chr1_1:6279158-6279177 Msa0003700:three_prime_UTR 50.0%
TTTCTAGACCCTGCTCATCC+GGG + chr1_1:6279159-6279178 Msa0003700:three_prime_UTR 50.0%
ACATGGTGCACTAAAGCTCC+CGG - chr1_1:6279180-6279199 None:intergenic 50.0%
! TTTCTCGCCACCATGACGGA+CGG + chr1_1:6273187-6273206 Msa0003700:exon 55.0%
GAAGAGATGACCGTCCGTCA+TGG - chr1_1:6273200-6273219 None:intergenic 55.0%
!! CGGACATAACGGGCGTAACA+TGG + chr1_1:6274366-6274385 Msa0003700:CDS 55.0%
CTCCCCAACAGTTACTCCGA+AGG - chr1_1:6274712-6274731 None:intergenic 55.0%
GACAAACTCACCTGAGCAGG+AGG - chr1_1:6275799-6275818 None:intergenic 55.0%
!! ATGGCTGATGTTGGTGCTGG+AGG + chr1_1:6275915-6275934 Msa0003700:CDS 55.0%
GTCTGCCCTTTCCGAATAGG+AGG - chr1_1:6276397-6276416 None:intergenic 55.0%
CTGCTCCTCAAGAGCTGCTT+TGG + chr1_1:6276682-6276701 Msa0003700:intron 55.0%
GGAGGCAAAGTTACCAAGCC+TGG + chr1_1:6276865-6276884 Msa0003700:CDS 55.0%
TTTGAGCGACATGCTGCTGG+TGG + chr1_1:6277148-6277167 Msa0003700:CDS 55.0%
GTCCTGCCCATGCAGTTCTA+AGG + chr1_1:6277345-6277364 Msa0003700:intron 55.0%
GCTGATGCCCAACCAACTGT+TGG + chr1_1:6277388-6277407 Msa0003700:CDS 55.0%
TGCCCAACCAACTGTTGGTG+TGG + chr1_1:6277393-6277412 Msa0003700:CDS 55.0%
GGCCACACCAACAGTTGGTT+GGG - chr1_1:6277398-6277417 None:intergenic 55.0%
TGGCCACACCAACAGTTGGT+TGG - chr1_1:6277399-6277418 None:intergenic 55.0%
ACCAACTGTTGGTGTGGCCA+AGG + chr1_1:6277399-6277418 Msa0003700:CDS 55.0%
ACCTTGGCCACACCAACAGT+TGG - chr1_1:6277403-6277422 None:intergenic 55.0%
CCTCTGTCTCACCACCACTT+TGG - chr1_1:6278001-6278020 None:intergenic 55.0%
! CCAAAGTGGTGGTGAGACAG+AGG + chr1_1:6277998-6278017 Msa0003700:CDS 55.0%
!! ACGGACGTGGGAAGAGTACT+TGG + chr1_1:6278410-6278429 Msa0003700:CDS 55.0%
AAGCAGCCCGTTATAACCCC+GGG - chr1_1:6278901-6278920 None:intergenic 55.0%
CAAGCAGCCCGTTATAACCC+CGG - chr1_1:6278902-6278921 None:intergenic 55.0%
AGGAAGGCTGGAGAAGGATG+AGG + chr1_1:6278935-6278954 Msa0003700:three_prime_UTR 55.0%
CTAAAGCTCCCGGATGAGCA+GGG - chr1_1:6279170-6279189 None:intergenic 55.0%
ACTAAAGCTCCCGGATGAGC+AGG - chr1_1:6279171-6279190 None:intergenic 55.0%
GAGATGACCGTCCGTCATGG+TGG - chr1_1:6273197-6273216 None:intergenic 60.0%
TGAAGATCGCCCTCCTGCTC+AGG + chr1_1:6275786-6275805 Msa0003700:CDS 60.0%
GGCGAACCACACTGCTGTAC+TGG - chr1_1:6276183-6276202 None:intergenic 60.0%
GCCCTTAGAACTGCATGGGC+AGG - chr1_1:6277350-6277369 None:intergenic 60.0%
GCGCTCGAGATGTGGATCGA+CGG - chr1_1:6277449-6277468 None:intergenic 60.0%
GTCTTGTGGGAGGCTGCATG+TGG + chr1_1:6277835-6277854 Msa0003700:intron 60.0%
!! GCACCTAAGAGGGCACTGTC+TGG + chr1_1:6278238-6278257 Msa0003700:CDS 60.0%
AGCAGCCCGTTATAACCCCG+GGG - chr1_1:6278900-6278919 None:intergenic 60.0%
GGCTTGAGGAAGGCTGGAGA+AGG + chr1_1:6278929-6278948 Msa0003700:three_prime_UTR 60.0%
AACATTACCCTCGGCGGCCG+TGG + chr1_1:6273223-6273242 Msa0003700:CDS 65.0%
!! GAGAGCTTACGGTGCCGCCA+CGG - chr1_1:6273243-6273262 None:intergenic 65.0%
TGTGGGAGGCTGCATGTGGC+AGG + chr1_1:6277839-6277858 Msa0003700:intron 65.0%
ATTACCCTCGGCGGCCGTGG+CGG + chr1_1:6273226-6273245 Msa0003700:CDS 70.0%
!! GGTGCCGCCACGGCCGCCGA+GGG - chr1_1:6273233-6273252 None:intergenic 85.0%
!!! CGGTGCCGCCACGGCCGCCG+AGG - chr1_1:6273234-6273253 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 6273129 6279249 6273129 ID=Msa0003700;Name=Msa0003700
chr1_1 mRNA 6273129 6279249 6273129 ID=Msa0003700-mRNA-1;Parent=Msa0003700;Name=Msa0003700-mRNA-1;_AED=0.10;_eAED=0.10;_QI=70|0.93|0.93|1|1|1|16|539|646
chr1_1 exon 6273129 6273252 6273129 ID=Msa0003700-mRNA-1:exon:1969;Parent=Msa0003700-mRNA-1
chr1_1 exon 6274284 6274469 6274284 ID=Msa0003700-mRNA-1:exon:1970;Parent=Msa0003700-mRNA-1
chr1_1 exon 6274675 6274780 6274675 ID=Msa0003700-mRNA-1:exon:1971;Parent=Msa0003700-mRNA-1
chr1_1 exon 6275403 6275539 6275403 ID=Msa0003700-mRNA-1:exon:1972;Parent=Msa0003700-mRNA-1
chr1_1 exon 6275724 6275807 6275724 ID=Msa0003700-mRNA-1:exon:1973;Parent=Msa0003700-mRNA-1
chr1_1 exon 6275891 6275985 6275891 ID=Msa0003700-mRNA-1:exon:1974;Parent=Msa0003700-mRNA-1
chr1_1 exon 6276111 6276219 6276111 ID=Msa0003700-mRNA-1:exon:1975;Parent=Msa0003700-mRNA-1
chr1_1 exon 6276355 6276441 6276355 ID=Msa0003700-mRNA-1:exon:1976;Parent=Msa0003700-mRNA-1
chr1_1 exon 6276539 6276631 6276539 ID=Msa0003700-mRNA-1:exon:1977;Parent=Msa0003700-mRNA-1
chr1_1 exon 6276820 6277017 6276820 ID=Msa0003700-mRNA-1:exon:1978;Parent=Msa0003700-mRNA-1
chr1_1 exon 6277133 6277278 6277133 ID=Msa0003700-mRNA-1:exon:1979;Parent=Msa0003700-mRNA-1
chr1_1 exon 6277360 6277507 6277360 ID=Msa0003700-mRNA-1:exon:1980;Parent=Msa0003700-mRNA-1
chr1_1 exon 6277921 6278019 6277921 ID=Msa0003700-mRNA-1:exon:1981;Parent=Msa0003700-mRNA-1
chr1_1 exon 6278112 6278291 6278112 ID=Msa0003700-mRNA-1:exon:1982;Parent=Msa0003700-mRNA-1
chr1_1 exon 6278377 6278464 6278377 ID=Msa0003700-mRNA-1:exon:1983;Parent=Msa0003700-mRNA-1
chr1_1 exon 6278580 6279249 6278580 ID=Msa0003700-mRNA-1:exon:1984;Parent=Msa0003700-mRNA-1
chr1_1 five_prime_UTR 6273129 6273198 6273129 ID=Msa0003700-mRNA-1:five_prime_utr;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6273199 6273252 6273199 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6274284 6274469 6274284 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6274675 6274780 6274675 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6275403 6275539 6275403 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6275724 6275807 6275724 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6275891 6275985 6275891 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6276111 6276219 6276111 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6276355 6276441 6276355 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6276539 6276631 6276539 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6276820 6277017 6276820 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6277133 6277278 6277133 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6277360 6277507 6277360 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6277921 6278019 6277921 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6278112 6278291 6278112 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6278377 6278464 6278377 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 CDS 6278580 6278710 6278580 ID=Msa0003700-mRNA-1:cds;Parent=Msa0003700-mRNA-1
chr1_1 three_prime_UTR 6278711 6279249 6278711 ID=Msa0003700-mRNA-1:three_prime_utr;Parent=Msa0003700-mRNA-1
Gene Sequence

>Msa0003700

ATGACGGACGGTCATCTCTTCAACAACATTACCCTCGGCGGCCGTGGCGGCACCAATCCGGGGCAGATAAAAATATATTCTGGAGGAATTTTATGGAAGAGACAGGGAGGTGGCAAATCAATTGATGTTGATAAGGCGGACATAACGGGCGTAACATGGATGAAGGTTCCAAAGACGAATCAACTTGGTGTTCAGATCAAAGATGGGTTGTTCTACAAATTCACTGGTTTCCGTGATCAGGATGTTGTAAGCTTGACAAGTTTCTTCCAAAACACCTTCGGAGTAACTGTTGGGGAGAAGCAACTTTCTGTTACTGGGCGCAATTGGGGAGAAGTTGATCTAAACGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCCCAAACAAACCTTCAAGGGAAAAATGATGTGATGTTGGAGTTTCACGTGGATGACACAACTGGAGCAAATGAGAAAGATTCTTTGATGGAGATGAGTTTCCATGTACCAAGTTCCAATACCCAGTTTGTTGGTGATGAAGATCGCCCTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGAGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAATTACACTTGTCATTTTTGCGGCTTCAGGGACAGGCTAACGATTTCAAAATCCAGTACAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAGCCGCATACCTTCGTCATTATTAGTCTTGATCCTCCTATTCGGAAAGGGCAGACTTTGTACCCTCATATCGTGATGCAGTTTGAAACTGATTATGTGGTTGAAAGTGAATTGGCAATGAGTGAAGATCTTTATAACTCAAAGTACAAAGACAAGTTGGAGCTGTCTTACAAGGGGCTTATCCATGAAGTGTTTACCACAATATTGCGTGGTTTGTCCGGAGGCAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAGTCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTGCCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAACATGCATTACTTTGACCTTCTTATCAGACTCAAATCTGAGCAAGAGCATCTCTTCCGAAATATTCAGAGAAATGAATACCACAATTTGTATGGTTTTATCAGTTCTAAGGGCTTGAAAATTATGAATTTAGCTGATGCCCAACCAACTGTTGGTGTGGCCAAGGTGCTTGAGAATGATGATGATGATGCCGTCGATCCACATCTCGAGCGCATCAGAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCAGATTTTGTTCTCGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGTGCAGATGACTCTGATGCTAGCCAAAGTGGTGGTGAGACAGAGAAACCTGCCAAGAAGGAACCAAAGAAGGATTTGCCTTCTAAGGCATCTACTTCTAAGAAGAAATCAAAAGATGCTGATGACGAAGGAGGAGTGAAGAAGAAACAGAAGAAGAAAAAGGATCCAAATGCACCTAAGAGGGCACTGTCTGGTTTCATGTTCTTTTCTCAGATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGACGTGGGAAGAGTACTTGGAGAAAAATGGAAAAATCTGTCGGGTATGGCTGCGGAGGAGAAGGAACCTTATGAGGCCAAAGCCCAAGAAGATAAAAAGCGTTACAAGGATGAGATGAGTGGTTACAACAAGAATCCTCAACCCATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA
Protein sequence

>Msa0003700

MTDGHLFNNITLGGRGGTNPGQIKIYSGGILWKRQGGGKSIDVDKADITGVTWMKVPKTNQLGVQIKDGLFYKFTGFRDQDVVSLTSFFQNTFGVTVGEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVMLEFHVDDTTGANEKDSLMEMSFHVPSSNTQFVGDEDRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVESELAMSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGGKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNLADAQPTVGVAKVLENDDDDAVDPHLERIRNEAGGDESDEEDSDFVLDKDDGGSPTDDSGADDSDASQSGGETEKPAKKEPKKDLPSKASTSKKKSKDADDEGGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSGMAAEEKEPYEAKAQEDKKRYKDEMSGYNKNPQPMNIDSGNESDSA*