AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644800 MtrunA17_Chr4g0026701 97.967 492 10 0 1 492 1 492 0.0 1001
Msa0644800 MtrunA17_Chr2g0321181 72.041 490 137 0 3 492 2 491 0.0 764
Msa0644800 MtrunA17_Chr2g0321201 68.980 490 151 1 3 492 4 492 0.0 729
Msa0644800 MtrunA17_Chr4g0026691 68.367 490 155 0 3 492 2 491 0.0 726
Msa0644800 MtrunA17_Chr4g0026711 47.967 492 252 2 5 492 4 495 1.68e-170 489
Msa0644800 MtrunA17_Chr4g0026771 46.721 488 254 4 10 492 6 492 1.70e-160 464
Msa0644800 MtrunA17_Chr6g0465391 46.450 493 227 5 3 492 2 460 2.77e-154 447
Msa0644800 MtrunA17_Chr1g0176054 39.279 499 292 6 1 492 114 608 4.26e-123 372
Msa0644800 MtrunA17_Chr5g0419501 39.348 399 185 4 4 399 3 347 8.35e-95 291
Msa0644800 MtrunA17_Chr4g0026891 49.327 223 109 2 10 228 6 228 5.76e-69 222
Msa0644800 MtrunA17_Chr5g0431251 49.231 130 66 0 181 310 1 130 2.48e-42 147
Msa0644800 MtrunA17_Chr4g0026911 41.530 183 103 4 310 489 3 184 2.99e-41 146
Msa0644800 MtrunA17_Chr5g0431241 53.968 126 56 1 5 130 4 127 1.65e-40 142
Msa0644800 MtrunA17_Chr5g0431281 39.785 186 106 3 310 492 28 210 9.44e-39 140
Msa0644800 MtrunA17_Chr6g0465381 44.898 147 79 1 244 388 1 147 7.96e-31 117
Msa0644800 MtrunA17_Chr5g0419491 46.809 94 50 0 399 492 7 100 1.04e-23 95.5
Msa0644800 MtrunA17_Chr4g0026901 66.667 57 19 0 228 284 16 72 9.26e-23 92.0
Msa0644800 MtrunA17_Chr5g0431271 56.716 67 29 0 244 310 1 67 1.57e-21 90.1
Msa0644800 MtrunA17_Chr5g0431261 35.556 90 58 0 310 399 3 92 1.04e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644800 AT4G33790.1 58.642 486 200 1 6 491 9 493 0.0 619
Msa0644800 AT3G44540.1 54.321 486 220 2 9 492 7 492 0.0 554
Msa0644800 AT5G22500.1 52.263 486 228 3 9 492 7 490 0.0 543
Msa0644800 AT3G44550.1 52.449 490 226 4 9 492 7 495 0.0 525
Msa0644800 AT3G44560.1 51.318 493 233 4 6 492 4 495 2.10e-175 502
Msa0644800 AT4G33790.2 58.530 381 157 1 111 491 1 380 2.33e-173 493
Msa0644800 AT3G44560.3 52.834 441 204 3 6 443 4 443 1.19e-159 461
Msa0644800 AT5G22500.2 54.592 392 175 2 9 399 7 396 3.24e-159 457
Msa0644800 AT3G44560.2 54.135 399 179 3 6 401 4 401 5.14e-148 429
Msa0644800 AT3G44550.2 51.421 387 182 3 111 492 1 386 2.19e-140 409
Msa0644800 AT3G44540.2 58.689 305 125 1 9 312 7 311 3.88e-130 380
Msa0644800 AT3G44540.3 58.689 305 125 1 9 312 7 311 3.88e-130 380
Msa0644800 AT5G22420.4 50.959 365 174 4 116 479 6 366 9.90e-130 381
Msa0644800 AT3G11980.1 40.361 498 277 8 7 492 124 613 2.07e-125 379
Msa0644800 AT5G22420.1 48.257 373 188 4 108 479 34 402 1.21e-122 365
Msa0644800 AT5G22420.1 62.000 50 19 0 9 58 7 56 4.53e-13 71.2
Msa0644800 AT5G22420.3 50.284 352 170 4 129 479 3 350 2.04e-122 362
Msa0644800 AT5G22420.6 50.284 352 170 4 129 479 3 350 2.04e-122 362
Msa0644800 AT5G22420.5 48.734 316 157 4 165 479 4 315 2.73e-103 312
Msa0644800 AT3G56700.2 36.646 483 285 7 7 488 77 539 4.56e-103 319
Msa0644800 AT5G22420.2 48.000 300 151 4 181 479 1 296 7.78e-96 292
Msa0644800 AT5G22420.7 48.000 300 151 4 181 479 1 296 7.78e-96 292
Msa0644800 AT3G56700.1 34.990 483 272 8 7 488 77 518 7.89e-92 289

Find 101 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTACTTGCTTCCTTTAA+AGG 0.098124 4_3:+49161722 Msa0644800:CDS
AGAAATTGAATAACCTTTAA+AGG 0.182202 4_3:-49161735 None:intergenic
CAACTTGGTGTTTCACTAAA+TGG 0.185971 4_3:+49160277 Msa0644800:CDS
TAAAATTGCCATGAAGGATT+TGG 0.220004 4_3:+49160390 Msa0644800:CDS
TGCGGTTGGTTGAACTTTAC+AGG 0.263042 4_3:+49162327 Msa0644800:CDS
TTTCTCTCTATATATATATT+TGG 0.267188 4_3:+49156166 None:intergenic
ATGCTTCCTTGCAGACTTAG+AGG 0.301520 4_3:+49160902 Msa0644800:CDS
TTCATGAACATTCATATTCC+TGG 0.304377 4_3:+49162646 Msa0644800:CDS
TTCCATTCCCAAATCCTTCA+TGG 0.309189 4_3:-49160398 None:intergenic
CCAAGAAAATTTCAATTTGA+AGG 0.310827 4_3:+49159131 Msa0644800:CDS
TTTCCACCAATGGATCAATT+TGG 0.317863 4_3:+49156285 Msa0644800:exon
GACAGTTTAATTGTTGCATA+TGG 0.320149 4_3:+49160864 Msa0644800:CDS
GCTAGAGAGATTAATAATAT+TGG 0.323863 4_3:+49162732 Msa0644800:three_prime_UTR
TGCAACAATTAAACTGTCTA+TGG 0.329367 4_3:-49160859 None:intergenic
CCTTGAGCATAAGAATGTTT+TGG 0.340479 4_3:+49156323 Msa0644800:CDS
GGTAACTTTGCCAACTTTGA+TGG 0.345674 4_3:-49161658 None:intergenic
AACGAATGTACATGTATCTT+TGG 0.350065 4_3:-49161704 None:intergenic
AAAATTGCCATGAAGGATTT+GGG 0.357512 4_3:+49160391 Msa0644800:CDS
GCATTGGGTTTAAATACATT+TGG 0.366725 4_3:+49159370 Msa0644800:CDS
AGATAAAGTTTCTTCACATT+TGG 0.367398 4_3:-49156522 None:intergenic
CAGAATATAGTTTCACTTGA+AGG 0.368930 4_3:-49162683 None:intergenic
CAAAGAACCTTTCCCTGGTT+GGG 0.394468 4_3:+49160699 Msa0644800:CDS
CTTCCTTCCTTGTCAAAACA+TGG 0.404754 4_3:-49161633 None:intergenic
GTATAACTCTTGAAGTAGAT+TGG 0.417054 4_3:-49159157 None:intergenic
AGTTGGCAAAGTTACCGTAT+TGG 0.425068 4_3:+49161665 Msa0644800:CDS
TAAGTGCTGGTAATGATTGT+AGG 0.428342 4_3:-49160676 None:intergenic
GTGCTTGTCCACGTATCAAC+AGG 0.430498 4_3:+49159439 Msa0644800:CDS
GAAGCAGATCCCTGCTGATA+TGG 0.433499 4_3:+49161467 Msa0644800:intron
TTAATTGTTGCATATGGTAA+AGG 0.436186 4_3:+49160870 Msa0644800:CDS
CAACCAACCGCATCACAGTA+TGG 0.442539 4_3:-49162316 None:intergenic
AAGGAATATTTGACAATGCC+AGG 0.451920 4_3:-49162664 None:intergenic
CCTTTCCCTGGTTGGGTCGA+AGG 0.461087 4_3:+49160706 Msa0644800:CDS
AGGCCCTATGTGTTCTTCAA+TGG 0.461502 4_3:+49162347 Msa0644800:CDS
ATCACGTGGGTTCATCTGTT+GGG 0.467939 4_3:+49161553 Msa0644800:CDS
TTTGTAAAGACATATGTGTT+TGG 0.467992 4_3:-49160592 None:intergenic
TCAGAGCAAAATTATATGGT+TGG 0.482019 4_3:+49160569 Msa0644800:intron
CTTACTCCTTCGACCCAACC+AGG 0.485945 4_3:-49160712 None:intergenic
TATCACGTGGGTTCATCTGT+TGG 0.489042 4_3:+49161552 Msa0644800:CDS
CTGGTTGGGTCGAAGGAGTA+AGG 0.490574 4_3:+49160713 Msa0644800:CDS
AGTGAAACACCAAGTTGGTA+TGG 0.494139 4_3:-49160271 None:intergenic
TGAGGAAAAGAGAGTAGTTG+AGG 0.494819 4_3:+49160321 Msa0644800:CDS
GCATTCACCACCATATCAGC+AGG 0.497234 4_3:-49161477 None:intergenic
GGATACTAAAATTGCCATGA+AGG 0.498148 4_3:+49160384 Msa0644800:CDS
ACAAAGAACCTTTCCCTGGT+TGG 0.498389 4_3:+49160698 Msa0644800:CDS
GAAAGGTTCTTTGTAAGTGC+TGG 0.505594 4_3:-49160689 None:intergenic
TGCCATGAAGGATTTGGGAA+TGG 0.510799 4_3:+49160396 Msa0644800:CDS
AATGCTAGTGGGAACTATGA+AGG 0.527078 4_3:+49160627 Msa0644800:CDS
TATGTCTTTACAAAGGCAAT+GGG 0.529172 4_3:+49160601 Msa0644800:CDS
GGACTTGTTCAAATTGCTGA+AGG 0.533109 4_3:+49159041 Msa0644800:CDS
ACAAGAGGGAGCTACTGAAA+AGG 0.533743 4_3:+49160363 Msa0644800:CDS
GAAGGAAGAGCCATCAAAGT+TGG 0.538912 4_3:+49161648 Msa0644800:CDS
ATACTGCCAAATTGATCCAT+TGG 0.540433 4_3:-49156291 None:intergenic
CTAAGACTCTCATATCTCAC+TGG 0.540860 4_3:-49161579 None:intergenic
TGCAGATATGATGTAGCATT+GGG 0.544440 4_3:+49159355 Msa0644800:intron
AAAGAGAGTTACTCTTTGCA+AGG 0.545203 4_3:-49156365 None:intergenic
ACTTACAAAGAACCTTTCCC+TGG 0.545331 4_3:+49160694 Msa0644800:CDS
CCAAAACATTCTTATGCTCA+AGG 0.551300 4_3:-49156323 None:intergenic
AGAGAGATTAATAATATTGG+TGG 0.552498 4_3:+49162735 Msa0644800:three_prime_UTR
CTGCCAAATTGATCCATTGG+TGG 0.553161 4_3:-49156288 None:intergenic
AAGACAAAGTGGAGTAGAGA+TGG 0.553343 4_3:+49162579 Msa0644800:CDS
ATGCAGATATGATGTAGCAT+TGG 0.559269 4_3:+49159354 Msa0644800:intron
TTTAAACTTCTTATTACGTG+TGG 0.563068 4_3:+49162777 Msa0644800:three_prime_UTR
ATTGAACATGCTTCAACAAG+AGG 0.567383 4_3:+49160348 Msa0644800:CDS
GAATGCAATGCTAGTGGCCA+TGG 0.569856 4_3:+49161494 Msa0644800:CDS
CAAATAGCAGCAAGACAAAG+TGG 0.573597 4_3:+49162568 Msa0644800:CDS
CAACAACTAACTTTGATGAA+AGG 0.576712 4_3:+49159211 Msa0644800:CDS
ATATGTCTTTACAAAGGCAA+TGG 0.586877 4_3:+49160600 Msa0644800:CDS
ACGCCATTGAAGAACACATA+GGG 0.595025 4_3:-49162350 None:intergenic
GAGAGGAGGACTGATAGTAG+AGG 0.600345 4_3:+49160246 Msa0644800:CDS
GGCAATGGGAGAAATGCTAG+TGG 0.600756 4_3:+49160615 Msa0644800:CDS
CATTTAGTGAAACACCAAGT+TGG 0.601093 4_3:-49160276 None:intergenic
TGAAGGATTTGGGAATGGAA+AGG 0.604642 4_3:+49160401 Msa0644800:CDS
CCTTCGACCCAACCAGGGAA+AGG 0.605631 4_3:-49160706 None:intergenic
TTAAATGTAGCATACGTATG+TGG 0.610970 4_3:+49160220 Msa0644800:intron
AAACTGCCTCTAAGTCTGCA+AGG 0.617704 4_3:-49160908 None:intergenic
AAATTGCTGAAGGAAAATCA+TGG 0.619305 4_3:+49159051 Msa0644800:CDS
GTTTCACTAAATGGAGTGCA+AGG 0.619534 4_3:+49160286 Msa0644800:CDS
AATACAAACCTGTTGATACG+TGG 0.632502 4_3:-49159447 None:intergenic
TGTAGGTCTCACAATAACAA+TGG 0.633502 4_3:-49160659 None:intergenic
TTACTCCTTCGACCCAACCA+GGG 0.637146 4_3:-49160711 None:intergenic
GCATACGTATGTGGAGAGAG+AGG 0.637651 4_3:+49160229 Msa0644800:intron
CACGCCATTGAAGAACACAT+AGG 0.641905 4_3:-49162351 None:intergenic
TGATGATAGCATATATCACG+TGG 0.642564 4_3:+49161539 Msa0644800:CDS
TTGAACATGCTTCAACAAGA+GGG 0.645462 4_3:+49160349 Msa0644800:CDS
GGTCCATACTGTGATGCGGT+TGG 0.646323 4_3:+49162313 Msa0644800:CDS
CACTAGAAGACTGCACAATG+AGG 0.647867 4_3:+49156575 Msa0644800:CDS
AATATGTACTTTGAAAATAG+CGG 0.651662 4_3:-49162274 None:intergenic
GCAAGGACTAGACATTGATG+AGG 0.656577 4_3:+49160303 Msa0644800:CDS
TTGATTTGCATGACTCACCA+TGG 0.657844 4_3:-49161511 None:intergenic
GTAGAGGATCCATACCAACT+TGG 0.659399 4_3:+49160262 Msa0644800:CDS
TACGTATGTGGAGAGAGAGG+AGG 0.668461 4_3:+49160232 Msa0644800:CDS
AAACACATATGTCTTTACAA+AGG 0.671076 4_3:+49160594 Msa0644800:CDS
GCAGATCCCTGCTGATATGG+TGG 0.671477 4_3:+49161470 Msa0644800:intron
AAAAGTGACTCTAGTGCCTG+GGG 0.681356 4_3:+49159101 Msa0644800:CDS
GCAATGGGAGAAATGCTAGT+GGG 0.681775 4_3:+49160616 Msa0644800:CDS
TGATATATGCTATCATCACA+AGG 0.681859 4_3:-49161534 None:intergenic
CATTCACCACCATATCAGCA+GGG 0.685104 4_3:-49161476 None:intergenic
GGAAGGTCCATACTGTGATG+CGG 0.690975 4_3:+49162309 Msa0644800:CDS
GGTGGTGAATGCAATGCTAG+TGG 0.712141 4_3:+49161488 Msa0644800:CDS
GATGATAGCATATATCACGT+GGG 0.729775 4_3:+49161540 Msa0644800:CDS
ATACGTGGACAAGCACCCTG+AGG 0.756197 4_3:-49159432 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATATATATTT+AGG - chr4_3:49158834-49158853 None:intergenic 0.0%
!! TATATATATATATATAATAT+TGG + chr4_3:49159566-49159585 Msa0644800:intron 0.0%
!!! TATACACAAATAATTTTTTT+TGG - chr4_3:49156657-49156676 None:intergenic 10.0%
!! AAAAAAATTATTTGTGTATA+AGG + chr4_3:49156657-49156676 Msa0644800:intron 10.0%
!!! TAGATTTTTATGTAATTTTA+CGG - chr4_3:49156981-49157000 None:intergenic 10.0%
!!! TTTTAGTTAAATATGTTAAT+TGG - chr4_3:49157525-49157544 None:intergenic 10.0%
!!! AAAATTGTATATTTTCAAAT+GGG - chr4_3:49157630-49157649 None:intergenic 10.0%
!! TGTATATTAATAGAAAAATA+CGG - chr4_3:49157670-49157689 None:intergenic 10.0%
!! AAATATCTTGAATAATATAT+TGG - chr4_3:49157773-49157792 None:intergenic 10.0%
!! TAAAAAATTTCTAAATTTGA+TGG - chr4_3:49159809-49159828 None:intergenic 10.0%
!! ATTAACTACAATAAAAAATT+TGG - chr4_3:49160750-49160769 None:intergenic 10.0%
!!! AAAAATTAAACTTGTTTTTT+AGG + chr4_3:49162090-49162109 Msa0644800:intron 10.0%
!! GTTTATTAAATTTGTGTATA+AGG + chr4_3:49156625-49156644 Msa0644800:intron 15.0%
!! AAATCACAAAAATATCTTAT+CGG + chr4_3:49157152-49157171 Msa0644800:intron 15.0%
!!! AACTTTTATGATGTAAATTT+AGG + chr4_3:49157458-49157477 Msa0644800:intron 15.0%
!!! CAAAATTGTATATTTTCAAA+TGG - chr4_3:49157631-49157650 None:intergenic 15.0%
!! AATTCATGAAATTAATTATG+AGG + chr4_3:49158302-49158321 Msa0644800:intron 15.0%
!! TGAATGAAAATTATAATTAG+TGG - chr4_3:49158378-49158397 None:intergenic 15.0%
!! AAGTTATCTTAAATATAAGA+CGG + chr4_3:49158440-49158459 Msa0644800:intron 15.0%
!!! GTTATATTAGTCTTTTTTTA+AGG + chr4_3:49159494-49159513 Msa0644800:intron 15.0%
!!! AATTTGATGGATATAAATAT+AGG - chr4_3:49159796-49159815 None:intergenic 15.0%
!!! TATTTTATTTTATTGGTTCT+AGG - chr4_3:49159977-49159996 None:intergenic 15.0%
!! AGAACCAATAAAATAAAATA+TGG + chr4_3:49159977-49159996 Msa0644800:intron 15.0%
!! TTAATTAATTTCAATAAGCA+TGG - chr4_3:49160182-49160201 None:intergenic 15.0%
!!! TTTGTTGTTAATTTGTTTAT+TGG - chr4_3:49160515-49160534 None:intergenic 15.0%
!!! TTTAGTTTATCTTCTTTAAA+AGG + chr4_3:49160950-49160969 Msa0644800:intron 15.0%
!!! ATATTTTATCCAAAGAATTT+GGG + chr4_3:49161093-49161112 Msa0644800:intron 15.0%
!! AGGTATTTAAAAAATTAACA+TGG - chr4_3:49161187-49161206 None:intergenic 15.0%
!! ATCTTCTTGAATTAAAAAAA+AGG + chr4_3:49161353-49161372 Msa0644800:intron 15.0%
!! TCTTCTTGAATTAAAAAAAA+GGG + chr4_3:49161354-49161373 Msa0644800:intron 15.0%
!!! TTTTTTCTAATACACAATTT+TGG - chr4_3:49161381-49161400 None:intergenic 15.0%
!! ACATAACTAAATGTATAATT+AGG + chr4_3:49161406-49161425 Msa0644800:intron 15.0%
!!! TAATTAAATCAATTTTGTCT+AGG - chr4_3:49161432-49161451 None:intergenic 15.0%
!! AAATAATTATGTGTTAACTT+TGG - chr4_3:49161823-49161842 None:intergenic 15.0%
!!! ATTAATTTGTGTTTTATAAC+AGG + chr4_3:49162223-49162242 Msa0644800:intron 15.0%
!!! TTAATTTGTGTTTTATAACA+GGG + chr4_3:49162224-49162243 Msa0644800:intron 15.0%
!!! CTATTATTCATTTCAAATTT+TGG + chr4_3:49162430-49162449 Msa0644800:intron 15.0%
!! AATTATTTGTGTATAAGGTA+CGG + chr4_3:49156662-49156681 Msa0644800:intron 20.0%
!!! ACTTAATAAATTGAGAGTTT+TGG - chr4_3:49156760-49156779 None:intergenic 20.0%
!! GTAATTAATGATGATTATGT+TGG + chr4_3:49156790-49156809 Msa0644800:intron 20.0%
!!! AAAACTCTTAACATTCTTTT+TGG + chr4_3:49156953-49156972 Msa0644800:intron 20.0%
!!! CATGCAATTTATTTTAGTAA+TGG - chr4_3:49157325-49157344 None:intergenic 20.0%
!!! AATGACTACATTCAATTTTT+TGG + chr4_3:49157911-49157930 Msa0644800:intron 20.0%
!!! CTTTTTGAGAATATCATAAT+TGG + chr4_3:49158343-49158362 Msa0644800:intron 20.0%
!!! TTTTCCTCAATAAAAAAAGT+TGG + chr4_3:49158470-49158489 Msa0644800:intron 20.0%
!!! CTTCAAATTGAAATTTTCTT+GGG - chr4_3:49159133-49159152 None:intergenic 20.0%
!!! CCTACCATATTTTATTTTAT+TGG - chr4_3:49159984-49160003 None:intergenic 20.0%
!! CCAATAAAATAAAATATGGT+AGG + chr4_3:49159981-49160000 Msa0644800:intron 20.0%
!!! ATTTTCAGAGCAAAATTATA+TGG + chr4_3:49160565-49160584 Msa0644800:intron 20.0%
!! ATTAAAGGAACACATAATAA+AGG - chr4_3:49160785-49160804 None:intergenic 20.0%
!! ATAAAAAGTGATCAAAATTG+TGG - chr4_3:49161028-49161047 None:intergenic 20.0%
!!! GATATTTTATCCAAAGAATT+TGG + chr4_3:49161092-49161111 Msa0644800:intron 20.0%
!! AGAAATTGAATAACCTTTAA+AGG - chr4_3:49161738-49161757 None:intergenic 20.0%
!!! CAAGTTTAATTTTTTTTCGT+AGG - chr4_3:49162084-49162103 None:intergenic 20.0%
!!! TAATTTGTGTTTTATAACAG+GGG + chr4_3:49162225-49162244 Msa0644800:intron 20.0%
!!! AATATGTACTTTGAAAATAG+CGG - chr4_3:49162277-49162296 None:intergenic 20.0%
!! GTGTATATTTGTAGTTTTTG+TGG + chr4_3:49156479-49156498 Msa0644800:intron 25.0%
! AGATAAAGTTTCTTCACATT+TGG - chr4_3:49156525-49156544 None:intergenic 25.0%
! AGGTATGTATAGACATTAAA+AGG + chr4_3:49156595-49156614 Msa0644800:intron 25.0%
! ATGAGAGGAGTAAAAAAAAA+AGG - chr4_3:49156923-49156942 None:intergenic 25.0%
! TAAGATTAGTACACAAAAGA+CGG - chr4_3:49157410-49157429 None:intergenic 25.0%
! AAGAAGAAAAAAAACCCTAA+TGG + chr4_3:49157488-49157507 Msa0644800:intron 25.0%
! TCAATTGTGTCAAGTATTAT+GGG + chr4_3:49157828-49157847 Msa0644800:intron 25.0%
! TGTAGCAGTCTATTTATTAT+AGG + chr4_3:49157885-49157904 Msa0644800:intron 25.0%
!! TTGATTTTCTCTCTTTTGAT+TGG + chr4_3:49158013-49158032 Msa0644800:intron 25.0%
! GTCAAAAAGTTGTTAGAAAA+TGG + chr4_3:49158106-49158125 Msa0644800:intron 25.0%
!!! GAACGGTAACAATTTTTTAT+AGG - chr4_3:49158212-49158231 None:intergenic 25.0%
! ATGAATTAGATTAGACAAGT+GGG - chr4_3:49158289-49158308 None:intergenic 25.0%
!!! ACTTCCAACTTTTTTTATTG+AGG - chr4_3:49158477-49158496 None:intergenic 25.0%
! GAATAATGCATATATATGCA+GGG + chr4_3:49158524-49158543 Msa0644800:intron 25.0%
! AATAATGCATATATATGCAG+GGG + chr4_3:49158525-49158544 Msa0644800:intron 25.0%
! TACTTGACCAAAAAAAAAGT+TGG + chr4_3:49158613-49158632 Msa0644800:intron 25.0%
!!! GCATTTTCCAACTTTTTTTT+TGG - chr4_3:49158623-49158642 None:intergenic 25.0%
! ATCCTAAAGTATATTTGTGA+TGG + chr4_3:49158863-49158882 Msa0644800:intron 25.0%
!! CCTTCAAATTGAAATTTTCT+TGG - chr4_3:49159134-49159153 None:intergenic 25.0%
! CCAAGAAAATTTCAATTTGA+AGG + chr4_3:49159131-49159150 Msa0644800:CDS 25.0%
! CAAAAATTGTATTAACCTCA+GGG + chr4_3:49159417-49159436 Msa0644800:CDS 25.0%
! TTTGAAAAGCTCTCATTTAT+CGG + chr4_3:49159612-49159631 Msa0644800:intron 25.0%
! AAAGATGCATATTGGAATTT+AGG - chr4_3:49159671-49159690 None:intergenic 25.0%
!!! AGATGAATTTTTCAATTACG+TGG + chr4_3:49159832-49159851 Msa0644800:intron 25.0%
! TGCATCTTAAGATAGTTATT+AGG + chr4_3:49159893-49159912 Msa0644800:intron 25.0%
! CATTTAGTATCAATCAATGT+AGG + chr4_3:49160152-49160171 Msa0644800:intron 25.0%
! TTTGTAAAGACATATGTGTT+TGG - chr4_3:49160595-49160614 None:intergenic 25.0%
! AAACACATATGTCTTTACAA+AGG + chr4_3:49160594-49160613 Msa0644800:CDS 25.0%
! TTAATTGTTGCATATGGTAA+AGG + chr4_3:49160870-49160889 Msa0644800:CDS 25.0%
!!! AGTTGATATTATTACCCTTT+TGG + chr4_3:49160982-49161001 Msa0644800:intron 25.0%
! CAAAAATATGAAGACCAAAA+GGG - chr4_3:49160999-49161018 None:intergenic 25.0%
! TCAAAAATATGAAGACCAAA+AGG - chr4_3:49161000-49161019 None:intergenic 25.0%
! AAAACTTTACCCAAATTCTT+TGG - chr4_3:49161105-49161124 None:intergenic 25.0%
!!! TTGGGTAAAGTTTTGATAAT+AGG + chr4_3:49161111-49161130 Msa0644800:intron 25.0%
!!! GTTTTCTGTTAGTTTATTGT+AGG - chr4_3:49161165-49161184 None:intergenic 25.0%
! AATGATTATGACATATAGGT+AGG - chr4_3:49161267-49161286 None:intergenic 25.0%
! GACAAATGATTATGACATAT+AGG - chr4_3:49161271-49161290 None:intergenic 25.0%
!! GCTATTCATATTTTCCAATA+CGG - chr4_3:49161682-49161701 None:intergenic 25.0%
! TGGAAAAATAGAAGTAATTG+AGG - chr4_3:49161764-49161783 None:intergenic 25.0%
!! GTTTAATTTCGATACATTGT+CGG - chr4_3:49161878-49161897 None:intergenic 25.0%
! ATGTATCGAAATTAAACTCT+AGG + chr4_3:49161881-49161900 Msa0644800:intron 25.0%
! TGTATCGAAATTAAACTCTA+GGG + chr4_3:49161882-49161901 Msa0644800:intron 25.0%
! TTAATAGATAACGAGTACAA+CGG - chr4_3:49161917-49161936 None:intergenic 25.0%
! GTAAGTATTTAAAAGTGGTA+GGG + chr4_3:49161999-49162018 Msa0644800:intron 25.0%
! AATTTAATATGCTAAGATCC+AGG - chr4_3:49162031-49162050 None:intergenic 25.0%
! GCTAGAGAGATTAATAATAT+TGG + chr4_3:49162732-49162751 Msa0644800:three_prime_UTR 25.0%
! AGAGAGATTAATAATATTGG+TGG + chr4_3:49162735-49162754 Msa0644800:three_prime_UTR 25.0%
! TTTAAACTTCTTATTACGTG+TGG + chr4_3:49162777-49162796 Msa0644800:three_prime_UTR 25.0%
!! TACTTTAACTTTTCCACCAA+TGG + chr4_3:49156275-49156294 Msa0644800:exon 30.0%
!!! CATAAGAATGTTTTGGTACT+TGG + chr4_3:49156330-49156349 Msa0644800:CDS 30.0%
!! TTATCTTCTTTTGAGAGCTA+CGG + chr4_3:49156539-49156558 Msa0644800:CDS 30.0%
TTATGTTGGTATCTTAAGTG+TGG + chr4_3:49156804-49156823 Msa0644800:intron 30.0%
GTACTATAAGTGAGTAAAGA+TGG + chr4_3:49156863-49156882 Msa0644800:intron 30.0%
! GAATGTTAAGAGTTTTCTCT+TGG - chr4_3:49156949-49156968 None:intergenic 30.0%
TCACAAAAATATCTTATCGG+TGG + chr4_3:49157155-49157174 Msa0644800:intron 30.0%
AAATACGGTCAAAGTAAGTT+AGG - chr4_3:49157655-49157674 None:intergenic 30.0%
! ATGCATTGACATGCTTAATA+AGG + chr4_3:49157805-49157824 Msa0644800:intron 30.0%
GTCAATTGTGTCAAGTATTA+TGG + chr4_3:49157827-49157846 Msa0644800:intron 30.0%
GTGATATTTGTACAACTCTT+TGG + chr4_3:49157971-49157990 Msa0644800:intron 30.0%
!!! ACCGTTTAAACTGCTATTTT+CGG - chr4_3:49158241-49158260 None:intergenic 30.0%
AAAATAGCAGTTTAAACGGT+TGG + chr4_3:49158241-49158260 Msa0644800:intron 30.0%
CATGAATTAGATTAGACAAG+TGG - chr4_3:49158290-49158309 None:intergenic 30.0%
AGAATATCATAATTGGTGAG+TGG + chr4_3:49158350-49158369 Msa0644800:intron 30.0%
GGAATAATGCATATATATGC+AGG + chr4_3:49158523-49158542 Msa0644800:intron 30.0%
!! ACTCCACTTATTCACTTTTA+AGG + chr4_3:49158568-49158587 Msa0644800:intron 30.0%
TCACCTTAAAAGTGAATAAG+TGG - chr4_3:49158574-49158593 None:intergenic 30.0%
TGTGTCTTGAAAAATTCTTG+AGG - chr4_3:49158665-49158684 None:intergenic 30.0%
!!! AGAATTTTTCAAGACACATG+TGG + chr4_3:49158667-49158686 Msa0644800:intron 30.0%
CACCATCACAAATATACTTT+AGG - chr4_3:49158868-49158887 None:intergenic 30.0%
! TCATATGTAGATTTTGCGAA+AGG + chr4_3:49159020-49159039 Msa0644800:intron 30.0%
AAATTGCTGAAGGAAAATCA+TGG + chr4_3:49159051-49159070 Msa0644800:CDS 30.0%
GTATAACTCTTGAAGTAGAT+TGG - chr4_3:49159160-49159179 None:intergenic 30.0%
CAACAACTAACTTTGATGAA+AGG + chr4_3:49159211-49159230 Msa0644800:CDS 30.0%
GCATTGGGTTTAAATACATT+TGG + chr4_3:49159370-49159389 Msa0644800:CDS 30.0%
! CCTGAGGTTAATACAATTTT+TGG - chr4_3:49159419-49159438 None:intergenic 30.0%
CCAAAAATTGTATTAACCTC+AGG + chr4_3:49159416-49159435 Msa0644800:CDS 30.0%
! AGAGCTTTTCAAACAATCTT+GGG - chr4_3:49159605-49159624 None:intergenic 30.0%
! ATCGGAAAGATAGTTTTTGA+TGG + chr4_3:49159630-49159649 Msa0644800:intron 30.0%
! ATAGTGGAAAAGATGCATAT+TGG - chr4_3:49159679-49159698 None:intergenic 30.0%
! TCTTTTCCACTATAATCTCT+CGG + chr4_3:49159686-49159705 Msa0644800:intron 30.0%
!! TTTTTGAGCTTGAGCAATAT+AGG + chr4_3:49159746-49159765 Msa0644800:intron 30.0%
! GAAAAATAGTTTGTCAGAAG+TGG - chr4_3:49159920-49159939 None:intergenic 30.0%
!! CTATTTTTCGCAATTCAATG+TGG + chr4_3:49159931-49159950 Msa0644800:intron 30.0%
CTTGTCTATTACTCCATTTA+AGG - chr4_3:49160072-49160091 None:intergenic 30.0%
GAATACCACAAAAGTTTAGT+TGG + chr4_3:49160113-49160132 Msa0644800:intron 30.0%
!! TAGTTGGTGAACTTAATATG+TGG + chr4_3:49160129-49160148 Msa0644800:intron 30.0%
TTAAATGTAGCATACGTATG+TGG + chr4_3:49160220-49160239 Msa0644800:intron 30.0%
TAAAATTGCCATGAAGGATT+TGG + chr4_3:49160390-49160409 Msa0644800:CDS 30.0%
AAAATTGCCATGAAGGATTT+GGG + chr4_3:49160391-49160410 Msa0644800:CDS 30.0%
TCAGAGCAAAATTATATGGT+TGG + chr4_3:49160569-49160588 Msa0644800:intron 30.0%
ATATGTCTTTACAAAGGCAA+TGG + chr4_3:49160600-49160619 Msa0644800:CDS 30.0%
TATGTCTTTACAAAGGCAAT+GGG + chr4_3:49160601-49160620 Msa0644800:CDS 30.0%
TGCAACAATTAAACTGTCTA+TGG - chr4_3:49160862-49160881 None:intergenic 30.0%
GACAGTTTAATTGTTGCATA+TGG + chr4_3:49160864-49160883 Msa0644800:CDS 30.0%
TTTATTGTAGGAGATGATGT+TGG - chr4_3:49161153-49161172 None:intergenic 30.0%
! ATATTTTACTTGCACGTCAT+TGG + chr4_3:49161297-49161316 Msa0644800:intron 30.0%
!!! AACGTCACACTTTTTTGAAA+TGG + chr4_3:49161323-49161342 Msa0644800:intron 30.0%
!!! ACGTCACACTTTTTTGAAAT+GGG + chr4_3:49161324-49161343 Msa0644800:intron 30.0%
TGATATATGCTATCATCACA+AGG - chr4_3:49161537-49161556 None:intergenic 30.0%
! CTACAGCTTCAGATATTTTA+CGG + chr4_3:49161605-49161624 Msa0644800:CDS 30.0%
AACGAATGTACATGTATCTT+TGG - chr4_3:49161707-49161726 None:intergenic 30.0%
!! AGTCAATTGTTTTGCATGAA+TGG - chr4_3:49161784-49161803 None:intergenic 30.0%
!! GAAATTAAACTCTAGGGTTT+GGG + chr4_3:49161888-49161907 Msa0644800:intron 30.0%
TAATAGATAACGAGTACAAC+GGG - chr4_3:49161916-49161935 None:intergenic 30.0%
GCAACGTAAGTATTTAAAAG+TGG + chr4_3:49161994-49162013 Msa0644800:intron 30.0%
CGTAAGTATTTAAAAGTGGT+AGG + chr4_3:49161998-49162017 Msa0644800:intron 30.0%
TTTCGTAGGTACAATTCATA+CGG - chr4_3:49162070-49162089 None:intergenic 30.0%
!!! GTACATATTTTGATATCAGC+AGG + chr4_3:49162288-49162307 Msa0644800:CDS 30.0%
!!! ATATTTTGATATCAGCAGGA+AGG + chr4_3:49162292-49162311 Msa0644800:CDS 30.0%
TTGACCCAAAAATGATTAAC+TGG + chr4_3:49162614-49162633 Msa0644800:CDS 30.0%
TGACCCAAAAATGATTAACT+GGG + chr4_3:49162615-49162634 Msa0644800:CDS 30.0%
TTCATGAACATTCATATTCC+TGG + chr4_3:49162646-49162665 Msa0644800:CDS 30.0%
CAGAATATAGTTTCACTTGA+AGG - chr4_3:49162686-49162705 None:intergenic 30.0%
TTTCCACCAATGGATCAATT+TGG + chr4_3:49156285-49156304 Msa0644800:exon 35.0%
ATACTGCCAAATTGATCCAT+TGG - chr4_3:49156294-49156313 None:intergenic 35.0%
CCAAAACATTCTTATGCTCA+AGG - chr4_3:49156326-49156345 None:intergenic 35.0%
! CCTTGAGCATAAGAATGTTT+TGG + chr4_3:49156323-49156342 Msa0644800:CDS 35.0%
AAAGAGAGTTACTCTTTGCA+AGG - chr4_3:49156368-49156387 None:intergenic 35.0%
AACACAAGGACAAAAAGAGA+GGG - chr4_3:49156709-49156728 None:intergenic 35.0%
AAACACAAGGACAAAAAGAG+AGG - chr4_3:49156710-49156729 None:intergenic 35.0%
ATGTCTCATGAAGAAACACA+AGG - chr4_3:49156723-49156742 None:intergenic 35.0%
TCCAAATCTACTGTTGTTGT+CGG + chr4_3:49157184-49157203 Msa0644800:intron 35.0%
TCATGCATATGCTCTTTCTT+TGG + chr4_3:49157242-49157261 Msa0644800:intron 35.0%
! ATGCTCTTTCTTTGGTAACA+TGG + chr4_3:49157250-49157269 Msa0644800:intron 35.0%
!! GTACACAAAAGACGGATTTT+TGG - chr4_3:49157402-49157421 None:intergenic 35.0%
!! TGGTGTCTTTTTCACCATTA+GGG - chr4_3:49157505-49157524 None:intergenic 35.0%
!! TTGGTGTCTTTTTCACCATT+AGG - chr4_3:49157506-49157525 None:intergenic 35.0%
TTCAAATGGGTCATCTATTG+CGG - chr4_3:49157617-49157636 None:intergenic 35.0%
TTGTGTCAAGTATTATGGGA+TGG + chr4_3:49157832-49157851 Msa0644800:intron 35.0%
! ATGGAGGGAGTAACATTTTA+AGG + chr4_3:49157851-49157870 Msa0644800:intron 35.0%
!!! CCGTTTAAACTGCTATTTTC+GGG - chr4_3:49158240-49158259 None:intergenic 35.0%
CCCGAAAATAGCAGTTTAAA+CGG + chr4_3:49158237-49158256 Msa0644800:intron 35.0%
!! TTTTTGGTCAAGTAGCCTAT+CGG - chr4_3:49158607-49158626 None:intergenic 35.0%
ATGCAGATATGATGTAGCAT+TGG + chr4_3:49159354-49159373 Msa0644800:intron 35.0%
TGCAGATATGATGTAGCATT+GGG + chr4_3:49159355-49159374 Msa0644800:intron 35.0%
AATACAAACCTGTTGATACG+TGG - chr4_3:49159450-49159469 None:intergenic 35.0%
! GAGAGCTTTTCAAACAATCT+TGG - chr4_3:49159606-49159625 None:intergenic 35.0%
TAGAATCCGAGAGATTATAG+TGG - chr4_3:49159695-49159714 None:intergenic 35.0%
ACTATAATCTCTCGGATTCT+AGG + chr4_3:49159694-49159713 Msa0644800:intron 35.0%
CTACAAGTGTACAAGAAAAG+TGG + chr4_3:49159869-49159888 Msa0644800:intron 35.0%
TTATGGTCATATGTTGAGCT+TGG - chr4_3:49160035-49160054 None:intergenic 35.0%
AGGTATGTGTTGCAGTATTA+TGG - chr4_3:49160052-49160071 None:intergenic 35.0%
ACTGCAACACATACCTTAAA+TGG + chr4_3:49160056-49160075 Msa0644800:intron 35.0%
! GTTCACCAACTAAACTTTTG+TGG - chr4_3:49160121-49160140 None:intergenic 35.0%
CATTTAGTGAAACACCAAGT+TGG - chr4_3:49160279-49160298 None:intergenic 35.0%
!! CAACTTGGTGTTTCACTAAA+TGG + chr4_3:49160277-49160296 Msa0644800:CDS 35.0%
ATTGAACATGCTTCAACAAG+AGG + chr4_3:49160348-49160367 Msa0644800:CDS 35.0%
TTGAACATGCTTCAACAAGA+GGG + chr4_3:49160349-49160368 Msa0644800:CDS 35.0%
GGATACTAAAATTGCCATGA+AGG + chr4_3:49160384-49160403 Msa0644800:CDS 35.0%
TGTAGGTCTCACAATAACAA+TGG - chr4_3:49160662-49160681 None:intergenic 35.0%
!! TAAGTGCTGGTAATGATTGT+AGG - chr4_3:49160679-49160698 None:intergenic 35.0%
TAGGTGGATGGGTATATTAT+AGG - chr4_3:49161248-49161267 None:intergenic 35.0%
GATTATGACATATAGGTAGG+TGG - chr4_3:49161264-49161283 None:intergenic 35.0%
!!! CGTCACACTTTTTTGAAATG+GGG + chr4_3:49161325-49161344 Msa0644800:intron 35.0%
TGATGATAGCATATATCACG+TGG + chr4_3:49161539-49161558 Msa0644800:CDS 35.0%
GATGATAGCATATATCACGT+GGG + chr4_3:49161540-49161559 Msa0644800:CDS 35.0%
!!! AAACCATGTTTTGACAAGGA+AGG + chr4_3:49161630-49161649 Msa0644800:CDS 35.0%
TCGTTACTTGCTTCCTTTAA+AGG + chr4_3:49161722-49161741 Msa0644800:CDS 35.0%
!! CGAAATTAAACTCTAGGGTT+TGG + chr4_3:49161887-49161906 Msa0644800:intron 35.0%
!! CCTCCCAGTTAATCATTTTT+GGG - chr4_3:49162621-49162640 None:intergenic 35.0%
! TCCTCCCAGTTAATCATTTT+TGG - chr4_3:49162622-49162641 None:intergenic 35.0%
AAGGAATATTTGACAATGCC+AGG - chr4_3:49162667-49162686 None:intergenic 35.0%
GTGTGGTAAATATCTCACGT+TGG + chr4_3:49156821-49156840 Msa0644800:intron 40.0%
GGTAAATATCTCACGTTGGA+TGG + chr4_3:49156825-49156844 Msa0644800:intron 40.0%
! GTTTTCTCTTGGATCATGAG+AGG - chr4_3:49156938-49156957 None:intergenic 40.0%
ACCGACAACAACAGTAGATT+TGG - chr4_3:49157188-49157207 None:intergenic 40.0%
CTCACCAATGTCATGTAGAA+CGG + chr4_3:49157215-49157234 Msa0644800:intron 40.0%
TGTCAAGTATTATGGGATGG+AGG + chr4_3:49157835-49157854 Msa0644800:intron 40.0%
GTCAAGTATTATGGGATGGA+GGG + chr4_3:49157836-49157855 Msa0644800:intron 40.0%
!! GCTATTTTCGGGAAGATGAA+CGG - chr4_3:49158229-49158248 None:intergenic 40.0%
ATGCATATATATGCAGGGGT+CGG + chr4_3:49158529-49158548 Msa0644800:intron 40.0%
! AAGTGAATAAGTGGAGTGTC+CGG - chr4_3:49158565-49158584 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - chr4_3:49158720-49158739 None:intergenic 40.0%
! AGGAAGTGTGGCTGAAAAAT+AGG - chr4_3:49158726-49158745 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - chr4_3:49158746-49158765 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr4_3:49158754-49158773 Msa0644800:intron 40.0%
GAGGTGGGTGTGAAAATTAA+TGG - chr4_3:49158915-49158934 None:intergenic 40.0%
! GGACTTGTTCAAATTGCTGA+AGG + chr4_3:49159041-49159060 Msa0644800:CDS 40.0%
AAAAAGTGACTCTAGTGCCT+GGG + chr4_3:49159100-49159119 Msa0644800:CDS 40.0%
!!! CTCGGATTCTAGGTTTTGTT+AGG + chr4_3:49159704-49159723 Msa0644800:intron 40.0%
GGTTAATCTTACGTGCTAGT+AGG - chr4_3:49160007-49160026 None:intergenic 40.0%
! CATATGTTGAGCTTGGTTCT+AGG - chr4_3:49160028-49160047 None:intergenic 40.0%
!! AGTGAAACACCAAGTTGGTA+TGG - chr4_3:49160274-49160293 None:intergenic 40.0%
GTTTCACTAAATGGAGTGCA+AGG + chr4_3:49160286-49160305 Msa0644800:CDS 40.0%
TGAGGAAAAGAGAGTAGTTG+AGG + chr4_3:49160321-49160340 Msa0644800:CDS 40.0%
TTCCATTCCCAAATCCTTCA+TGG - chr4_3:49160401-49160420 None:intergenic 40.0%
TGAAGGATTTGGGAATGGAA+AGG + chr4_3:49160401-49160420 Msa0644800:CDS 40.0%
AATGCTAGTGGGAACTATGA+AGG + chr4_3:49160627-49160646 Msa0644800:CDS 40.0%
GAAAGGTTCTTTGTAAGTGC+TGG - chr4_3:49160692-49160711 None:intergenic 40.0%
ACTTACAAAGAACCTTTCCC+TGG + chr4_3:49160694-49160713 Msa0644800:CDS 40.0%
! CTTAGAGGCAGTTTTTGATG+TGG + chr4_3:49160917-49160936 Msa0644800:CDS 40.0%
! CAGTTTTTGATGTGGTGAGA+AGG + chr4_3:49160925-49160944 Msa0644800:intron 40.0%
TGACATATAGGTAGGTGGAT+GGG - chr4_3:49161259-49161278 None:intergenic 40.0%
ATGACATATAGGTAGGTGGA+TGG - chr4_3:49161260-49161279 None:intergenic 40.0%
!! TTGATTTGCATGACTCACCA+TGG - chr4_3:49161514-49161533 None:intergenic 40.0%
CTAAGACTCTCATATCTCAC+TGG - chr4_3:49161582-49161601 None:intergenic 40.0%
!!! GGCAAAACCATGTTTTGACA+AGG + chr4_3:49161626-49161645 Msa0644800:CDS 40.0%
CTTCCTTCCTTGTCAAAACA+TGG - chr4_3:49161636-49161655 None:intergenic 40.0%
GGTAACTTTGCCAACTTTGA+TGG - chr4_3:49161661-49161680 None:intergenic 40.0%
AGTTGGCAAAGTTACCGTAT+TGG + chr4_3:49161665-49161684 Msa0644800:CDS 40.0%
TTAAGCGTATACCCGCAAAA+CGG + chr4_3:49161967-49161986 Msa0644800:intron 40.0%
! AAAGTGGTAGGGTTTTTACC+TGG + chr4_3:49162010-49162029 Msa0644800:intron 40.0%
ACGCCATTGAAGAACACATA+GGG - chr4_3:49162353-49162372 None:intergenic 40.0%
CAAATAGCAGCAAGACAAAG+TGG + chr4_3:49162568-49162587 Msa0644800:CDS 40.0%
AAGACAAAGTGGAGTAGAGA+TGG + chr4_3:49162579-49162598 Msa0644800:CDS 40.0%
CCCAAAAATGATTAACTGGG+AGG + chr4_3:49162618-49162637 Msa0644800:CDS 40.0%
CTGCCAAATTGATCCATTGG+TGG - chr4_3:49156291-49156310 None:intergenic 45.0%
CACTAGAAGACTGCACAATG+AGG + chr4_3:49156575-49156594 Msa0644800:CDS 45.0%
GTGACAAACGTTACGTCTCT+TGG + chr4_3:49157115-49157134 Msa0644800:intron 45.0%
CGTTCTACATGACATTGGTG+AGG - chr4_3:49157217-49157236 None:intergenic 45.0%
ACCAATGTCATGTAGAACGG+TGG + chr4_3:49157218-49157237 Msa0644800:intron 45.0%
TCCACCGTTCTACATGACAT+TGG - chr4_3:49157222-49157241 None:intergenic 45.0%
ATGGGTCATCTATTGCGGAA+CGG - chr4_3:49157612-49157631 None:intergenic 45.0%
TACCAAGTGAGCTAAGCTCA+CGG - chr4_3:49158502-49158521 None:intergenic 45.0%
TGAGCTTAGCTCACTTGGTA+AGG + chr4_3:49158502-49158521 Msa0644800:intron 45.0%
TGCATATATATGCAGGGGTC+GGG + chr4_3:49158530-49158549 Msa0644800:intron 45.0%
! AGTGAATAAGTGGAGTGTCC+GGG - chr4_3:49158564-49158583 None:intergenic 45.0%
GGTGAATTTCTCTAGCCGAT+AGG + chr4_3:49158589-49158608 Msa0644800:intron 45.0%
AGCCACACTTCCTTGAATTG+TGG + chr4_3:49158733-49158752 Msa0644800:intron 45.0%
TGCCACAATTCAAGGAAGTG+TGG - chr4_3:49158738-49158757 None:intergenic 45.0%
GAAAAAGTGACTCTAGTGCC+TGG + chr4_3:49159099-49159118 Msa0644800:CDS 45.0%
AAAAGTGACTCTAGTGCCTG+GGG + chr4_3:49159101-49159120 Msa0644800:CDS 45.0%
! TTTTCTTGGGAAATGTCCCC+AGG - chr4_3:49159120-49159139 None:intergenic 45.0%
GTAGAGGATCCATACCAACT+TGG + chr4_3:49160262-49160281 Msa0644800:CDS 45.0%
GCAAGGACTAGACATTGATG+AGG + chr4_3:49160303-49160322 Msa0644800:CDS 45.0%
ACAAGAGGGAGCTACTGAAA+AGG + chr4_3:49160363-49160382 Msa0644800:CDS 45.0%
TGCCATGAAGGATTTGGGAA+TGG + chr4_3:49160396-49160415 Msa0644800:CDS 45.0%
GCAATGGGAGAAATGCTAGT+GGG + chr4_3:49160616-49160635 Msa0644800:CDS 45.0%
ACAAAGAACCTTTCCCTGGT+TGG + chr4_3:49160698-49160717 Msa0644800:CDS 45.0%
CAAAGAACCTTTCCCTGGTT+GGG + chr4_3:49160699-49160718 Msa0644800:CDS 45.0%
ATGCTTCCTTGCAGACTTAG+AGG + chr4_3:49160902-49160921 Msa0644800:CDS 45.0%
AAACTGCCTCTAAGTCTGCA+AGG - chr4_3:49160911-49160930 None:intergenic 45.0%
CATTCACCACCATATCAGCA+GGG - chr4_3:49161479-49161498 None:intergenic 45.0%
TATCACGTGGGTTCATCTGT+TGG + chr4_3:49161552-49161571 Msa0644800:CDS 45.0%
ATCACGTGGGTTCATCTGTT+GGG + chr4_3:49161553-49161572 Msa0644800:CDS 45.0%
GAAGGAAGAGCCATCAAAGT+TGG + chr4_3:49161648-49161667 Msa0644800:CDS 45.0%
! TACGTTGCAAGTCCGTTTTG+CGG - chr4_3:49161982-49162001 None:intergenic 45.0%
! TGCGGTTGGTTGAACTTTAC+AGG + chr4_3:49162327-49162346 Msa0644800:CDS 45.0%
AGGCCCTATGTGTTCTTCAA+TGG + chr4_3:49162347-49162366 Msa0644800:CDS 45.0%
CACGCCATTGAAGAACACAT+AGG - chr4_3:49162354-49162373 None:intergenic 45.0%
!! TAATAATTAAAGAAAATTAA+AGG - chr4_3:49160800-49160819 None:intergenic 5.0%
!!! AAATCATATTAATATTTTTT+AGG - chr4_3:49161207-49161226 None:intergenic 5.0%
!!! AAAAATATTAATATGATTTT+TGG + chr4_3:49161208-49161227 Msa0644800:intron 5.0%
!!! GTTTTGGTACTTGGTGCTGC+TGG + chr4_3:49156339-49156358 Msa0644800:CDS 50.0%
AAGATGGTGTCCACCCTTGT+CGG + chr4_3:49156879-49156898 Msa0644800:intron 50.0%
TACCGAGAGTAACCCGACAA+GGG - chr4_3:49156895-49156914 None:intergenic 50.0%
ATACCGAGAGTAACCCGACA+AGG - chr4_3:49156896-49156915 None:intergenic 50.0%
GTCATCTATTGCGGAACGGA+TGG - chr4_3:49157608-49157627 None:intergenic 50.0%
ACCAAGTGAGCTAAGCTCAC+GGG - chr4_3:49158501-49158520 None:intergenic 50.0%
GCATATATATGCAGGGGTCG+GGG + chr4_3:49158531-49158550 Msa0644800:intron 50.0%
! GTGAATAAGTGGAGTGTCCG+GGG - chr4_3:49158563-49158582 None:intergenic 50.0%
! ATTTTCACACCCACCTCACG+TGG + chr4_3:49158918-49158937 Msa0644800:intron 50.0%
! TTTTCACACCCACCTCACGT+GGG + chr4_3:49158919-49158938 Msa0644800:intron 50.0%
GTGCTTGTCCACGTATCAAC+AGG + chr4_3:49159439-49159458 Msa0644800:CDS 50.0%
GCATACGTATGTGGAGAGAG+AGG + chr4_3:49160229-49160248 Msa0644800:intron 50.0%
TACGTATGTGGAGAGAGAGG+AGG + chr4_3:49160232-49160251 Msa0644800:CDS 50.0%
GAGAGGAGGACTGATAGTAG+AGG + chr4_3:49160246-49160265 Msa0644800:CDS 50.0%
GGCAATGGGAGAAATGCTAG+TGG + chr4_3:49160615-49160634 Msa0644800:CDS 50.0%
TTACTCCTTCGACCCAACCA+GGG - chr4_3:49160714-49160733 None:intergenic 50.0%
GAAGCAGATCCCTGCTGATA+TGG + chr4_3:49161467-49161486 Msa0644800:intron 50.0%
GCATTCACCACCATATCAGC+AGG - chr4_3:49161480-49161499 None:intergenic 50.0%
GGTGGTGAATGCAATGCTAG+TGG + chr4_3:49161488-49161507 Msa0644800:CDS 50.0%
GAATGCAATGCTAGTGGCCA+TGG + chr4_3:49161494-49161513 Msa0644800:CDS 50.0%
! ACGTTGCAAGTCCGTTTTGC+GGG - chr4_3:49161981-49162000 None:intergenic 50.0%
GGAAGGTCCATACTGTGATG+CGG + chr4_3:49162309-49162328 Msa0644800:CDS 50.0%
CAACCAACCGCATCACAGTA+TGG - chr4_3:49162319-49162338 None:intergenic 50.0%
AGATGGTGTCCACCCTTGTC+GGG + chr4_3:49156880-49156899 Msa0644800:intron 55.0%
CACCCTTGTCGGGTTACTCT+CGG + chr4_3:49156890-49156909 Msa0644800:intron 55.0%
CCAAGTGAGCTAAGCTCACG+GGG - chr4_3:49158500-49158519 None:intergenic 55.0%
TTTCACACCCACCTCACGTG+GGG + chr4_3:49158920-49158939 Msa0644800:intron 55.0%
ATACGTGGACAAGCACCCTG+AGG - chr4_3:49159435-49159454 None:intergenic 55.0%
CTTACTCCTTCGACCCAACC+AGG - chr4_3:49160715-49160734 None:intergenic 55.0%
CTGGTTGGGTCGAAGGAGTA+AGG + chr4_3:49160713-49160732 Msa0644800:CDS 55.0%
GCAGATCCCTGCTGATATGG+TGG + chr4_3:49161470-49161489 Msa0644800:intron 55.0%
GGTCCATACTGTGATGCGGT+TGG + chr4_3:49162313-49162332 Msa0644800:CDS 55.0%
CGAGAGTAACCCGACAAGGG+TGG - chr4_3:49156892-49156911 None:intergenic 60.0%
CCCCGTGAGCTTAGCTCACT+TGG + chr4_3:49158497-49158516 Msa0644800:intron 60.0%
CCTTCGACCCAACCAGGGAA+AGG - chr4_3:49160709-49160728 None:intergenic 60.0%
CCTTTCCCTGGTTGGGTCGA+AGG + chr4_3:49160706-49160725 Msa0644800:CDS 60.0%
CAAGCCTCCCCACGTGAGGT+GGG - chr4_3:49158930-49158949 None:intergenic 65.0%
TAGCCAAGCCTCCCCACGTG+AGG - chr4_3:49158934-49158953 None:intergenic 65.0%
AGGGGTCGGGGTTCGAACCC+CGG + chr4_3:49158543-49158562 Msa0644800:intron 70.0%
CACACCCACCTCACGTGGGG+AGG + chr4_3:49158923-49158942 Msa0644800:intron 70.0%
CCAAGCCTCCCCACGTGAGG+TGG - chr4_3:49158931-49158950 None:intergenic 70.0%
CCACCTCACGTGGGGAGGCT+TGG + chr4_3:49158928-49158947 Msa0644800:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 49156178 49162835 49156178 ID=Msa0644800;Name=Msa0644800
chr4_3 mRNA 49156178 49162835 49156178 ID=Msa0644800-mRNA-1;Parent=Msa0644800;Name=Msa0644800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=116|1|1|1|1|1|10|142|492
chr4_3 exon 49156178 49156375 49156178 ID=Msa0644800-mRNA-1:exon:11685;Parent=Msa0644800-mRNA-1
chr4_3 exon 49156493 49156596 49156493 ID=Msa0644800-mRNA-1:exon:11686;Parent=Msa0644800-mRNA-1
chr4_3 exon 49159030 49159232 49159030 ID=Msa0644800-mRNA-1:exon:11687;Parent=Msa0644800-mRNA-1
chr4_3 exon 49159360 49159460 49159360 ID=Msa0644800-mRNA-1:exon:11688;Parent=Msa0644800-mRNA-1
chr4_3 exon 49160230 49160422 49160230 ID=Msa0644800-mRNA-1:exon:11689;Parent=Msa0644800-mRNA-1
chr4_3 exon 49160573 49160734 49160573 ID=Msa0644800-mRNA-1:exon:11690;Parent=Msa0644800-mRNA-1
chr4_3 exon 49160857 49160938 49160857 ID=Msa0644800-mRNA-1:exon:11691;Parent=Msa0644800-mRNA-1
chr4_3 exon 49161474 49161743 49161474 ID=Msa0644800-mRNA-1:exon:11692;Parent=Msa0644800-mRNA-1
chr4_3 exon 49162245 49162372 49162245 ID=Msa0644800-mRNA-1:exon:11693;Parent=Msa0644800-mRNA-1
chr4_3 exon 49162540 49162835 49162540 ID=Msa0644800-mRNA-1:exon:11694;Parent=Msa0644800-mRNA-1
chr4_3 five_prime_UTR 49156178 49156293 49156178 ID=Msa0644800-mRNA-1:five_prime_utr;Parent=Msa0644800-mRNA-1
chr4_3 CDS 49156294 49156375 49156294 ID=Msa0644800-mRNA-1:cds;Parent=Msa0644800-mRNA-1
chr4_3 CDS 49156493 49156596 49156493 ID=Msa0644800-mRNA-1:cds;Parent=Msa0644800-mRNA-1
chr4_3 CDS 49159030 49159232 49159030 ID=Msa0644800-mRNA-1:cds;Parent=Msa0644800-mRNA-1
chr4_3 CDS 49159360 49159460 49159360 ID=Msa0644800-mRNA-1:cds;Parent=Msa0644800-mRNA-1
chr4_3 CDS 49160230 49160422 49160230 ID=Msa0644800-mRNA-1:cds;Parent=Msa0644800-mRNA-1
chr4_3 CDS 49160573 49160734 49160573 ID=Msa0644800-mRNA-1:cds;Parent=Msa0644800-mRNA-1
chr4_3 CDS 49160857 49160938 49160857 ID=Msa0644800-mRNA-1:cds;Parent=Msa0644800-mRNA-1
chr4_3 CDS 49161474 49161743 49161474 ID=Msa0644800-mRNA-1:cds;Parent=Msa0644800-mRNA-1
chr4_3 CDS 49162245 49162372 49162245 ID=Msa0644800-mRNA-1:cds;Parent=Msa0644800-mRNA-1
chr4_3 CDS 49162540 49162693 49162540 ID=Msa0644800-mRNA-1:cds;Parent=Msa0644800-mRNA-1
chr4_3 three_prime_UTR 49162694 49162835 49162694 ID=Msa0644800-mRNA-1:three_prime_utr;Parent=Msa0644800-mRNA-1
Gene Sequence

>Msa0644800

ATGGATCAATTTGGCAGTATTGCTCACTTCCTTGAGCATAAGAATGTTTTGGTACTTGGTGCTGCTGGCTTCCTTGCAAAGATTTTTGTGGAGAAGATATTAAGAGTTCAACCAAATGTGAAGAAACTTTATCTTCTTTTGAGAGCTACGGATGCTGAATCTGTCACTAGAAGACTGCACAATGAGATTTTGCGAAAGGACTTGTTCAAATTGCTGAAGGAAAATCATGGAGCAAAGTTCAATAGTTTTATCTCTGAAAAAGTGACTCTAGTGCCTGGGGACATTTCCCAAGAAAATTTCAATTTGAAGGACTCCAATCTACTTCAAGAGTTATACAATCAAACTGATGTCATTGTGAATTTAGCTGCAACAACTAACTTTGATGAAAGATATGATGTAGCATTGGGTTTAAATACATTTGGAGTCAAGCATGTCTTAAACTTTGCCAAAAATTGTATTAACCTCAGGGTGCTTGTCCACGTATCAACAGCATACGTATGTGGAGAGAGAGGAGGACTGATAGTAGAGGATCCATACCAACTTGGTGTTTCACTAAATGGAGTGCAAGGACTAGACATTGATGAGGAAAAGAGAGTAGTTGAGGAGAAATTGAACATGCTTCAACAAGAGGGAGCTACTGAAAAGGATACTAAAATTGCCATGAAGGATTTGGGAATGGAAAGAGCAAAATTATATGGTTGGCCAAACACATATGTCTTTACAAAGGCAATGGGAGAAATGCTAGTGGGAACTATGAAGGAAAAATTGTCCATTGTTATTGTGAGACCTACAATCATTACCAGCACTTACAAAGAACCTTTCCCTGGTTGGGTCGAAGGAGTAAGAACCATAGACAGTTTAATTGTTGCATATGGTAAAGGAAAATTAACATGCTTCCTTGCAGACTTAGAGGCAGTTTTTGATGTGATCCCTGCTGATATGGTGGTGAATGCAATGCTAGTGGCCATGGTGAGTCATGCAAATCAACCTTGTGATGATAGCATATATCACGTGGGTTCATCTGTTGGGAATCCAGTGAGATATGAGAGTCTTAGAGACTACAGCTTCAGATATTTTACGGCAAAACCATGTTTTGACAAGGAAGGAAGAGCCATCAAAGTTGGCAAAGTTACCGTATTGGAAAATATGAATAGCTTCCAAAGATACATGTACATTCGTTACTTGCTTCCTTTAAAGGGGCTAGAGCTAGTGAACGCAGCTTTTTGCCGCTATTTTCAAAGTACATATTTTGATATCAGCAGGAAGGTCCATACTGTGATGCGGTTGGTTGAACTTTACAGGCCCTATGTGTTCTTCAATGGCGTATTTGATAATATGAACGCAGAGAAGTTGCAAATAGCAGCAAGACAAAGTGGAGTAGAGATGGATTTATTTTACTTTGACCCAAAAATGATTAACTGGGAGGACTATTTCATGAACATTCATATTCCTGGCATTGTCAAATATTCCTTCAAGTGA

Protein sequence

>Msa0644800

MDQFGSIAHFLEHKNVLVLGAAGFLAKIFVEKILRVQPNVKKLYLLLRATDAESVTRRLHNEILRKDLFKLLKENHGAKFNSFISEKVTLVPGDISQENFNLKDSNLLQELYNQTDVIVNLAATTNFDERYDVALGLNTFGVKHVLNFAKNCINLRVLVHVSTAYVCGERGGLIVEDPYQLGVSLNGVQGLDIDEEKRVVEEKLNMLQQEGATEKDTKIAMKDLGMERAKLYGWPNTYVFTKAMGEMLVGTMKEKLSIVIVRPTIITSTYKEPFPGWVEGVRTIDSLIVAYGKGKLTCFLADLEAVFDVIPADMVVNAMLVAMVSHANQPCDDSIYHVGSSVGNPVRYESLRDYSFRYFTAKPCFDKEGRAIKVGKVTVLENMNSFQRYMYIRYLLPLKGLELVNAAFCRYFQSTYFDISRKVHTVMRLVELYRPYVFFNGVFDNMNAEKLQIAARQSGVEMDLFYFDPKMINWEDYFMNIHIPGIVKYSFK*