AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1303250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303250 MtrunA17_Chr5g0425951 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr4g0030431 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr3g0100121 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr3g0113681 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr2g0327641 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr3g0103351 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr8g0352791 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr3g0103821 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr3g0104031 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr7g0225731 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr3g0103801 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr3g0103881 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr7g0262791 100.000 103 0 0 17 119 1 103 1.37e-68 201
Msa1303250 MtrunA17_Chr4g0072411 94.595 111 6 0 9 119 51 161 1.90e-58 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303250 AT3G53730.1 100.000 103 0 0 17 119 1 103 1.90e-68 201
Msa1303250 AT1G07820.2 100.000 103 0 0 17 119 1 103 1.90e-68 201
Msa1303250 AT1G07820.1 100.000 103 0 0 17 119 1 103 1.90e-68 201
Msa1303250 AT5G59690.1 100.000 103 0 0 17 119 1 103 1.90e-68 201
Msa1303250 AT3G46320.1 100.000 103 0 0 17 119 1 103 1.90e-68 201
Msa1303250 AT2G28740.1 100.000 103 0 0 17 119 1 103 1.90e-68 201
Msa1303250 AT1G07660.1 100.000 103 0 0 17 119 1 103 1.90e-68 201
Msa1303250 AT3G45930.1 100.000 103 0 0 17 119 1 103 1.90e-68 201
Msa1303250 AT5G59970.1 100.000 103 0 0 17 119 1 103 1.90e-68 201
Msa1303250 AT5G59970.2 100.000 103 0 0 17 119 1 103 1.90e-68 201
Msa1303250 AT1G07660.2 83.495 103 0 1 17 119 1 86 2.80e-51 157

Find 34 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCGGTGGTTAGAAAATT+AGG 0.180601 8_3:+66234352 Msa1303250:exon
TAGGGATTTCTATGTCAATT+AGG 0.191874 8_3:+66234371 Msa1303250:three_prime_UTR
AGGGATTTCTATGTCAATTA+GGG 0.325752 8_3:+66234372 Msa1303250:three_prime_UTR
AAATTCATGAAATTAATTAC+TGG 0.328530 8_3:-66234526 None:intergenic
GGTTCTCCGCGACAACATTC+AGG 0.329692 8_3:+66234116 Msa1303250:CDS
ATTCGGTGGTTAGAAAATTA+GGG 0.379571 8_3:+66234353 Msa1303250:exon
GGCAAAGGAGGAAAGGGTTT+AGG 0.384869 8_3:+66234066 Msa1303250:CDS
GGAGGAAAGGGTTTAGGAAA+GGG 0.429069 8_3:+66234072 Msa1303250:CDS
GGAAGGACTCTTTACGGATT+CGG 0.436444 8_3:+66234336 Msa1303250:CDS
AGGCAGGGAAGGACTCTTTA+CGG 0.443617 8_3:+66234330 Msa1303250:CDS
TCAACTTTCGCAGCTATGTC+AGG 0.463992 8_3:+66234039 Msa1303250:CDS
TGTTTACGCTCTCAAGAGGC+AGG 0.493747 8_3:+66234314 Msa1303250:CDS
TGTTGTCGCGGAGAACCTTA+CGG 0.502023 8_3:-66234110 None:intergenic
AGGAAGAGGCAAAGGAGGAA+AGG 0.518412 8_3:+66234059 Msa1303250:CDS
GGAAGAGGCAAAGGAGGAAA+GGG 0.527098 8_3:+66234060 Msa1303250:CDS
AGGAGGAAAGGGTTTAGGAA+AGG 0.528235 8_3:+66234071 Msa1303250:CDS
GGAAAGGGTTTAGGAAAGGG+AGG 0.536831 8_3:+66234075 Msa1303250:CDS
CCGTAAAACTGTTACTGCGA+TGG 0.549023 8_3:+66234287 Msa1303250:CDS
GTTCTCCGCGACAACATTCA+GGG 0.554706 8_3:+66234117 Msa1303250:CDS
TTCGCAGCTATGTCAGGAAG+AGG 0.562303 8_3:+66234045 Msa1303250:CDS
GCTATGTCAGGAAGAGGCAA+AGG 0.571124 8_3:+66234051 Msa1303250:CDS
AGGAGCAAAACGACACCGTA+AGG 0.575994 8_3:+66234095 Msa1303250:CDS
ACGCTCTCAAGAGGCAGGGA+AGG 0.583359 8_3:+66234319 Msa1303250:CDS
CTTGCAAGACGACGAATCGC+AGG 0.588436 8_3:-66234150 None:intergenic
ATGTCAGGAAGAGGCAAAGG+AGG 0.592343 8_3:+66234054 Msa1303250:CDS
AGGACTCTTTACGGATTCGG+TGG 0.600535 8_3:+66234339 Msa1303250:CDS
ATGTTGTTTACGCTCTCAAG+AGG 0.616421 8_3:+66234310 Msa1303250:CDS
GTTTACGCTCTCAAGAGGCA+GGG 0.624823 8_3:+66234315 Msa1303250:CDS
CGTCGTCTTGCAAGACGTGG+TGG 0.633046 8_3:+66234159 Msa1303250:CDS
TTAATCTATGAAGAAACTCG+TGG 0.634992 8_3:+66234201 Msa1303250:CDS
TAATTCCCTGAATGTTGTCG+CGG 0.640736 8_3:-66234122 None:intergenic
ATTCGTCGTCTTGCAAGACG+TGG 0.646636 8_3:+66234156 Msa1303250:CDS
TTGAGCTCCAGCATTAACGA+TGG 0.651363 8_3:+66234457 Msa1303250:three_prime_UTR
GGTGGTGTGAAACGTATCAG+TGG 0.722771 8_3:+66234177 Msa1303250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATAAAAAAATTATT+TGG + chr8_3:66232921-66232940 Msa1303250:intron 0.0%
!! TATATATAAAAAAATTATTT+GGG + chr8_3:66232922-66232941 Msa1303250:intron 0.0%
!!! AATTACTTTTATGAATTTTT+TGG + chr8_3:66230934-66230953 Msa1303250:intron 10.0%
!! ATAAAATTATTATACATTGA+TGG + chr8_3:66233125-66233144 Msa1303250:intron 10.0%
!!! AATTTTTTCAATTGTTTTAT+GGG - chr8_3:66233355-66233374 None:intergenic 10.0%
!!! TAATTTTTTCAATTGTTTTA+TGG - chr8_3:66233356-66233375 None:intergenic 10.0%
!!! TTAAATGCATAAAATTTTAT+AGG - chr8_3:66233504-66233523 None:intergenic 10.0%
!!! AACTTTTAAGAAAAAAATTA+GGG - chr8_3:66233603-66233622 None:intergenic 10.0%
!!! TTTAATTTCAAAATCAAGAA+TGG - chr8_3:66231191-66231210 None:intergenic 15.0%
!!! TGTCATTATTTTATCATATA+TGG - chr8_3:66231759-66231778 None:intergenic 15.0%
!!! GTTATTGTGATTTTTTTTAT+TGG - chr8_3:66232502-66232521 None:intergenic 15.0%
!! GTAGTTAAAAATATATTAGT+AGG + chr8_3:66232757-66232776 Msa1303250:intron 15.0%
!! ATTATGAGAGTAAAATATAA+GGG - chr8_3:66233040-66233059 None:intergenic 15.0%
!! AATTATGAGAGTAAAATATA+AGG - chr8_3:66233041-66233060 None:intergenic 15.0%
!! GTAAAAGATAAATAAAACAA+GGG + chr8_3:66233151-66233170 Msa1303250:intron 15.0%
!!! ACATGTTTTATTGATATTTT+GGG + chr8_3:66233410-66233429 Msa1303250:intron 15.0%
!!! GAACTTTTAAGAAAAAAATT+AGG - chr8_3:66233604-66233623 None:intergenic 15.0%
!!! AATTTTTTTCTTAAAAGTTC+AGG + chr8_3:66233604-66233623 Msa1303250:intron 15.0%
!!! ATTTTTTTCTTAAAAGTTCA+GGG + chr8_3:66233605-66233624 Msa1303250:intron 15.0%
!!! TAGCTTTTATTTAAGAATCA+CGG - chr8_3:66231354-66231373 None:intergenic 20.0%
!! TATTTCTTAGAGTAAACATA+AGG + chr8_3:66231471-66231490 Msa1303250:intron 20.0%
!! AATGCTCTTCAAAATAAAAA+AGG + chr8_3:66231694-66231713 Msa1303250:intron 20.0%
!!! TCTTTTCAAACTAAAGATTA+GGG - chr8_3:66232075-66232094 None:intergenic 20.0%
!!! AAGATAGCAATATTTTTATG+AGG + chr8_3:66232434-66232453 Msa1303250:intron 20.0%
!!! TACAATTTGTTGTTGTTTTT+TGG - chr8_3:66232584-66232603 None:intergenic 20.0%
!!! CTATATTGTTCTTGTTTTTT+TGG - chr8_3:66232607-66232626 None:intergenic 20.0%
!! AAAAAACAAGAACAATATAG+AGG + chr8_3:66232607-66232626 Msa1303250:intron 20.0%
!! GGTAAAAGATAAATAAAACA+AGG + chr8_3:66233150-66233169 Msa1303250:intron 20.0%
!!! CACATGTTTTATTGATATTT+TGG + chr8_3:66233409-66233428 Msa1303250:intron 20.0%
!!! GATATTTTGGGATAATTTTT+TGG + chr8_3:66233422-66233441 Msa1303250:intron 20.0%
!! TTAAATCACAATGAAATCTT+TGG + chr8_3:66233699-66233718 Msa1303250:intron 20.0%
!!! GATTTTAGATGTTTAGTTTT+TGG - chr8_3:66233817-66233836 None:intergenic 20.0%
!!! TAGAATTCGGAAATTTTATA+GGG - chr8_3:66233965-66233984 None:intergenic 20.0%
!!! TTAGAATTCGGAAATTTTAT+AGG - chr8_3:66233966-66233985 None:intergenic 20.0%
! ATTACTATCGAATTCCAATT+AGG - chr8_3:66231094-66231113 None:intergenic 25.0%
!!! AGCTTTTATTTAAGAATCAC+GGG - chr8_3:66231353-66231372 None:intergenic 25.0%
!!! CATACTCATTGATTTTAGAT+AGG + chr8_3:66231570-66231589 Msa1303250:intron 25.0%
!! GAGAAGTTTAAAATGATCAA+AGG - chr8_3:66232035-66232054 None:intergenic 25.0%
!! CTTTTCAAACTAAAGATTAG+GGG - chr8_3:66232074-66232093 None:intergenic 25.0%
!! GTCTTTTCAAACTAAAGATT+AGG - chr8_3:66232076-66232095 None:intergenic 25.0%
!!! ATAGCAATATTTTTATGAGG+TGG + chr8_3:66232437-66232456 Msa1303250:intron 25.0%
!! GAATAATTTTTGTCTGACTT+AGG - chr8_3:66232717-66232736 None:intergenic 25.0%
! ATTCCACATAAAATCGAATT+TGG + chr8_3:66232733-66232752 Msa1303250:intron 25.0%
! TTCCACATAAAATCGAATTT+GGG + chr8_3:66232734-66232753 Msa1303250:intron 25.0%
! ATTATTTGGGCTACAAAATT+TGG + chr8_3:66232935-66232954 Msa1303250:intron 25.0%
! TTATTTGGGCTACAAAATTT+GGG + chr8_3:66232936-66232955 Msa1303250:intron 25.0%
!! AATTATTATACATTGATGGC+AGG + chr8_3:66233129-66233148 Msa1303250:intron 25.0%
!! TATAGGAAGTTTCTTCTTTT+AGG - chr8_3:66233487-66233506 None:intergenic 25.0%
!!! GTAGTAAATGGTTTTTTTGT+GGG - chr8_3:66233795-66233814 None:intergenic 25.0%
!!! GTTTAGTTTTTGGTAGTAAA+TGG - chr8_3:66233807-66233826 None:intergenic 25.0%
!! AGAATTCGGAAATTTTATAG+GGG - chr8_3:66233964-66233983 None:intergenic 25.0%
! TGAATTGCTATGTTAGAATT+CGG - chr8_3:66233978-66233997 None:intergenic 25.0%
TAAATTGTGTAGTGCCTAAT+TGG + chr8_3:66231077-66231096 Msa1303250:intron 30.0%
TATTGCACACACTTAATGTA+AGG + chr8_3:66231133-66231152 Msa1303250:intron 30.0%
TGTTATCTTCAAAGACTGAA+AGG - chr8_3:66231298-66231317 None:intergenic 30.0%
GTCATTATGTTTCAAACAGT+GGG - chr8_3:66231331-66231350 None:intergenic 30.0%
TAGAAGAAGTTGCAATAAGT+TGG + chr8_3:66231382-66231401 Msa1303250:intron 30.0%
ACAGGTTATTGACCATTTAA+TGG - chr8_3:66231502-66231521 None:intergenic 30.0%
!!! CATTGATTTTAGATAGGACT+TGG + chr8_3:66231576-66231595 Msa1303250:intron 30.0%
GATTACGATTAACTGTACAA+TGG + chr8_3:66231607-66231626 Msa1303250:intron 30.0%
ATATAGAATTGCATCATGCT+AGG + chr8_3:66231632-66231651 Msa1303250:intron 30.0%
TATAATCGCTATACCATTGT+AGG + chr8_3:66231808-66231827 Msa1303250:intron 30.0%
AATCATGCTCAAAATTTGGA+TGG - chr8_3:66231991-66232010 None:intergenic 30.0%
CCATAATCATGCTCAAAATT+TGG - chr8_3:66231995-66232014 None:intergenic 30.0%
! CCAAATTTTGAGCATGATTA+TGG + chr8_3:66231992-66232011 Msa1303250:intron 30.0%
! ATAATCAGTTTGCTTGTGAT+CGG - chr8_3:66232104-66232123 None:intergenic 30.0%
ATATGTGAATGAGGATAAGT+GGG - chr8_3:66232175-66232194 None:intergenic 30.0%
TATATGTGAATGAGGATAAG+TGG - chr8_3:66232176-66232195 None:intergenic 30.0%
TGCTATGTTATATGTGAATG+AGG - chr8_3:66232184-66232203 None:intergenic 30.0%
TCATTCACATATAACATAGC+AGG + chr8_3:66232183-66232202 Msa1303250:intron 30.0%
CAGACAGTAAGAATCAATTA+AGG + chr8_3:66232277-66232296 Msa1303250:intron 30.0%
!!! ATCCTTTAGTTTTTAAGCGA+TGG + chr8_3:66232665-66232684 Msa1303250:intron 30.0%
!!! TCCTTTAGTTTTTAAGCGAT+GGG + chr8_3:66232666-66232685 Msa1303250:intron 30.0%
TCCACATAAAATCGAATTTG+GGG + chr8_3:66232735-66232754 Msa1303250:intron 30.0%
!!! TAATTTTGAAGTTGTTGCAG+AGG - chr8_3:66233082-66233101 None:intergenic 30.0%
ACAAGTTAAGGAGCTTAAAA+TGG + chr8_3:66233199-66233218 Msa1303250:intron 30.0%
GTTAAGAATGCAAATGTAGA+AGG - chr8_3:66233303-66233322 None:intergenic 30.0%
ATTCTTAACTTATGCCACAA+GGG + chr8_3:66233314-66233333 Msa1303250:intron 30.0%
AATCACAATGAAATCTTTGG+CGG + chr8_3:66233702-66233721 Msa1303250:intron 30.0%
!!! AAATTTTAAAGCACGTCAGA+GGG - chr8_3:66233750-66233769 None:intergenic 30.0%
!!! GGTAGTAAATGGTTTTTTTG+TGG - chr8_3:66233796-66233815 None:intergenic 30.0%
!! TTAGAGTGCTTGATTTTGAT+TGG - chr8_3:66233866-66233885 None:intergenic 30.0%
TTTAAACTTCTCCATTCACA+CGG + chr8_3:66233901-66233920 Msa1303250:intron 30.0%
TTAATCTATGAAGAAACTCG+TGG + chr8_3:66234201-66234220 Msa1303250:CDS 30.0%
! ATTCGGTGGTTAGAAAATTA+GGG + chr8_3:66234353-66234372 Msa1303250:exon 30.0%
TAGGGATTTCTATGTCAATT+AGG + chr8_3:66234371-66234390 Msa1303250:three_prime_UTR 30.0%
AGGGATTTCTATGTCAATTA+GGG + chr8_3:66234372-66234391 Msa1303250:three_prime_UTR 30.0%
!! ATGGATTGGAGCAAATTTAC+TGG - chr8_3:66231037-66231056 None:intergenic 35.0%
! AGTAAATTTGCTCCAATCCA+TGG + chr8_3:66231036-66231055 Msa1303250:intron 35.0%
! GTAAATTTGCTCCAATCCAT+GGG + chr8_3:66231037-66231056 Msa1303250:intron 35.0%
!!! TCAAAGAGACTGTCCTTTTT+TGG + chr8_3:66231227-66231246 Msa1303250:intron 35.0%
ATCTGACTTTGATGCAAGAA+TGG - chr8_3:66231256-66231275 None:intergenic 35.0%
! TGCATCAAAGTCAGATTTTG+AGG + chr8_3:66231260-66231279 Msa1303250:intron 35.0%
GGTCATTATGTTTCAAACAG+TGG - chr8_3:66231332-66231351 None:intergenic 35.0%
GGTTATTGACCATTTAATGG+AGG - chr8_3:66231499-66231518 None:intergenic 35.0%
ACAATGCTGTACGTAGTTTA+TGG + chr8_3:66231524-66231543 Msa1303250:intron 35.0%
TGTACGTAGTTTATGGTTTC+TGG + chr8_3:66231531-66231550 Msa1303250:intron 35.0%
GTACGTAGTTTATGGTTTCT+GGG + chr8_3:66231532-66231551 Msa1303250:intron 35.0%
TAGATAGGACTTGGATAAGT+TGG + chr8_3:66231585-66231604 Msa1303250:intron 35.0%
ATGTTAGACAAAGCCTACAA+TGG - chr8_3:66231824-66231843 None:intergenic 35.0%
TTTGGATGGCATAGTTAAAG+AGG - chr8_3:66231977-66231996 None:intergenic 35.0%
TTCAAACTAAAGATTAGGGG+TGG - chr8_3:66232071-66232090 None:intergenic 35.0%
CAAGCAAACTGATTATACTC+AGG + chr8_3:66232108-66232127 Msa1303250:intron 35.0%
TTCACATATAACATAGCAGG+AGG + chr8_3:66232186-66232205 Msa1303250:intron 35.0%
! CAATTGGATTCAAGTTTCTC+AGG - chr8_3:66232235-66232254 None:intergenic 35.0%
CTGAGAAACTTGAATCCAAT+TGG + chr8_3:66232233-66232252 Msa1303250:intron 35.0%
GATTCTTACTGTCTGAAGAT+TGG - chr8_3:66232272-66232291 None:intergenic 35.0%
! TCTGTGCATGAAGTTTTACA+TGG - chr8_3:66232332-66232351 None:intergenic 35.0%
ATGTAAAACTTCATGCACAG+AGG + chr8_3:66232331-66232350 Msa1303250:intron 35.0%
AAGACTTTGAGCACTTTAAC+AGG - chr8_3:66232387-66232406 None:intergenic 35.0%
! TAAAGTGCTCAAAGTCTTCT+TGG + chr8_3:66232389-66232408 Msa1303250:intron 35.0%
TCCCATCGCTTAAAAACTAA+AGG - chr8_3:66232670-66232689 None:intergenic 35.0%
!! GACTTAGGTTAGTTTCACTT+CGG - chr8_3:66232702-66232721 None:intergenic 35.0%
! ACCCCAAATTCGATTTTATG+TGG - chr8_3:66232739-66232758 None:intergenic 35.0%
CATTCTTAACTTATGCCACA+AGG + chr8_3:66233313-66233332 Msa1303250:intron 35.0%
TTTCTTAACATGTGCCCTAA+GGG - chr8_3:66233464-66233483 None:intergenic 35.0%
!! AATGTTAATTTGTGCCCTCA+AGG - chr8_3:66233579-66233598 None:intergenic 35.0%
ATCACAATGAAATCTTTGGC+GGG + chr8_3:66233703-66233722 Msa1303250:intron 35.0%
!!! CAAATTTTAAAGCACGTCAG+AGG - chr8_3:66233751-66233770 None:intergenic 35.0%
GAAGTTTAAAGATTGAGCGT+TGG - chr8_3:66233891-66233910 None:intergenic 35.0%
!!! TCTCTCTTTTGAGATTGAAC+TGG - chr8_3:66234014-66234033 None:intergenic 35.0%
!! GATTCGGTGGTTAGAAAATT+AGG + chr8_3:66234352-66234371 Msa1303250:exon 35.0%
TGCGAGTTCTTTCGCAATAA+AGG - chr8_3:66230980-66230999 None:intergenic 40.0%
GCAAGAATGGCTTCCAAAAA+AGG - chr8_3:66231243-66231262 None:intergenic 40.0%
!!! AAGTCAGATTTTGAGGCACA+TGG + chr8_3:66231267-66231286 Msa1303250:intron 40.0%
!!! AGTCAGATTTTGAGGCACAT+GGG + chr8_3:66231268-66231287 Msa1303250:intron 40.0%
TTCAAACAGTGGGATCGAAT+GGG - chr8_3:66231321-66231340 None:intergenic 40.0%
TTTCAAACAGTGGGATCGAA+TGG - chr8_3:66231322-66231341 None:intergenic 40.0%
! CATAAGGTGCCTCCATTAAA+TGG + chr8_3:66231487-66231506 Msa1303250:intron 40.0%
GAATTGCATCATGCTAGGTT+AGG + chr8_3:66231637-66231656 Msa1303250:intron 40.0%
CATCATGCTAGGTTAGGATA+GGG + chr8_3:66231643-66231662 Msa1303250:intron 40.0%
CATTTCTTCCCTTGCTTCTA+AGG - chr8_3:66231944-66231963 None:intergenic 40.0%
TGGCATAGTTAAAGAGGTGA+AGG - chr8_3:66231971-66231990 None:intergenic 40.0%
AAATGATCAAAGGCAGTCGA+AGG - chr8_3:66232025-66232044 None:intergenic 40.0%
! GGTGTTTGGAATTGTCCAAT+TGG - chr8_3:66232251-66232270 None:intergenic 40.0%
! ACTGTCTGAAGATTGGTGTT+TGG - chr8_3:66232265-66232284 None:intergenic 40.0%
TAAAACTTCATGCACAGAGG+AGG + chr8_3:66232334-66232353 Msa1303250:intron 40.0%
ATATTGCTATCTTCGTCGCT+GGG - chr8_3:66232427-66232446 None:intergenic 40.0%
AATATTGCTATCTTCGTCGC+TGG - chr8_3:66232428-66232447 None:intergenic 40.0%
TGATGTTGGATTCAACTCCT+CGG - chr8_3:66232808-66232827 None:intergenic 40.0%
TGCATGTGTACTCATGATGT+TGG - chr8_3:66232822-66232841 None:intergenic 40.0%
! TGTTTATACAGCTGACTCAG+TGG - chr8_3:66232854-66232873 None:intergenic 40.0%
!! CTCCTTAACTTGTGCTCTAA+GGG - chr8_3:66233192-66233211 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTTG+TGG - chr8_3:66233331-66233350 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTT+AGG + chr8_3:66233446-66233465 Msa1303250:intron 40.0%
!! AGTGTTAACTTGTGCCCTTA+GGG + chr8_3:66233447-66233466 Msa1303250:intron 40.0%
GTTTCTTAACATGTGCCCTA+AGG - chr8_3:66233465-66233484 None:intergenic 40.0%
! TTCCAATAACTTGTGCCTTG+AGG + chr8_3:66233561-66233580 Msa1303250:intron 40.0%
! TCCAATAACTTGTGCCTTGA+GGG + chr8_3:66233562-66233581 Msa1303250:intron 40.0%
TGGCTAGAATCACCAAAATG+TGG + chr8_3:66233646-66233665 Msa1303250:intron 40.0%
! GTGAGATTCTAGCCACATTT+TGG - chr8_3:66233661-66233680 None:intergenic 40.0%
TTGATTGGTGGAGAGATTGT+GGG - chr8_3:66233851-66233870 None:intergenic 40.0%
TTTGATTGGTGGAGAGATTG+TGG - chr8_3:66233852-66233871 None:intergenic 40.0%
!!! GAGTGCTTGATTTTGATTGG+TGG - chr8_3:66233863-66233882 None:intergenic 40.0%
! TCGGAAATTTTATAGGGGAC+CGG - chr8_3:66233959-66233978 None:intergenic 40.0%
TAATTCCCTGAATGTTGTCG+CGG - chr8_3:66234125-66234144 None:intergenic 40.0%
! CCATCGCAGTAACAGTTTTA+CGG - chr8_3:66234290-66234309 None:intergenic 40.0%
! ATGTTGTTTACGCTCTCAAG+AGG + chr8_3:66234310-66234329 Msa1303250:CDS 40.0%
GCAAAAACCATCGTTAATGC+TGG - chr8_3:66234467-66234486 None:intergenic 40.0%
AATTAGTCGCAACAGACCCA+TGG - chr8_3:66231056-66231075 None:intergenic 45.0%
CTACGTACAGCATTGTAGAC+AGG - chr8_3:66231520-66231539 None:intergenic 45.0%
GCATCATGCTAGGTTAGGAT+AGG + chr8_3:66231642-66231661 Msa1303250:intron 45.0%
! TTCTTCCCTTGCTTCTAAGG+CGG - chr8_3:66231941-66231960 None:intergenic 45.0%
! AGTTTGCTTGTGATCGGTGA+CGG - chr8_3:66232098-66232117 None:intergenic 45.0%
TAACGTTTCAGCATACGCAG+AGG + chr8_3:66232141-66232160 Msa1303250:intron 45.0%
CTCAAAGTCTTCTTGGCAAG+AGG + chr8_3:66232396-66232415 Msa1303250:intron 45.0%
TATTGCTATCTTCGTCGCTG+GGG - chr8_3:66232426-66232445 None:intergenic 45.0%
AGTAGGAGTTGAATCCGAAC+AGG + chr8_3:66232774-66232793 Msa1303250:intron 45.0%
TAGAGCTGTTTACACCCACA+AGG + chr8_3:66232972-66232991 Msa1303250:intron 45.0%
CTGTTTACACCCACAAGGAA+CGG + chr8_3:66232977-66232996 Msa1303250:intron 45.0%
TTGTTGCAGAGGATATGTGC+GGG - chr8_3:66233071-66233090 None:intergenic 45.0%
GTTGTTGCAGAGGATATGTG+CGG - chr8_3:66233072-66233091 None:intergenic 45.0%
TGCCCTTAGAGCACAAGTTA+AGG + chr8_3:66233187-66233206 Msa1303250:intron 45.0%
!! GCTCCTTAACTTGTGCTCTA+AGG - chr8_3:66233193-66233212 None:intergenic 45.0%
! TTTGGTGATTCTAGCCACGT+GGG - chr8_3:66233643-66233662 None:intergenic 45.0%
!! TTTTGGTGATTCTAGCCACG+TGG - chr8_3:66233644-66233663 None:intergenic 45.0%
AATGTGGCTAGAATCTCACG+TGG + chr8_3:66233662-66233681 Msa1303250:intron 45.0%
ATGTGGCTAGAATCTCACGT+GGG + chr8_3:66233663-66233682 Msa1303250:intron 45.0%
TGATTGGTGGAGAGATTGTG+GGG - chr8_3:66233850-66233869 None:intergenic 45.0%
CATATTCGTAGCCGTTGGAT+TGG - chr8_3:66233934-66233953 None:intergenic 45.0%
CAACGGCTACGAATATGTTC+CGG + chr8_3:66233937-66233956 Msa1303250:intron 45.0%
TCAACTTTCGCAGCTATGTC+AGG + chr8_3:66234039-66234058 Msa1303250:CDS 45.0%
AGGAGGAAAGGGTTTAGGAA+AGG + chr8_3:66234071-66234090 Msa1303250:CDS 45.0%
GGAGGAAAGGGTTTAGGAAA+GGG + chr8_3:66234072-66234091 Msa1303250:CDS 45.0%
CCGTAAAACTGTTACTGCGA+TGG + chr8_3:66234287-66234306 Msa1303250:CDS 45.0%
GGAAGGACTCTTTACGGATT+CGG + chr8_3:66234336-66234355 Msa1303250:CDS 45.0%
TTGAGCTCCAGCATTAACGA+TGG + chr8_3:66234457-66234476 Msa1303250:three_prime_UTR 45.0%
!! AAATTAATAATAAATGATTA+CGG + chr8_3:66233370-66233389 Msa1303250:intron 5.0%
!! TTCTAAGGCGGAGGATGAAG+TGG - chr8_3:66231929-66231948 None:intergenic 50.0%
ATCCTCCGCCTTAGAAGCAA+GGG + chr8_3:66231933-66231952 Msa1303250:intron 50.0%
CCTCGGATTCATGTCCTGTT+CGG - chr8_3:66232791-66232810 None:intergenic 50.0%
TTTCCAGAGCCGTTCCTTGT+GGG - chr8_3:66232989-66233008 None:intergenic 50.0%
! TTTTCCAGAGCCGTTCCTTG+TGG - chr8_3:66232990-66233009 None:intergenic 50.0%
TGTTGCAGAGGATATGTGCG+GGG - chr8_3:66233070-66233089 None:intergenic 50.0%
GCCCTCAAGGCACAAGTTAT+TGG - chr8_3:66233566-66233585 None:intergenic 50.0%
!! TTGGTAGCGATCCGTGTGAA+TGG - chr8_3:66233915-66233934 None:intergenic 50.0%
ACGGATCGCTACCAATCCAA+CGG + chr8_3:66233920-66233939 Msa1303250:intron 50.0%
CGGAACATATTCGTAGCCGT+TGG - chr8_3:66233939-66233958 None:intergenic 50.0%
TTCGCAGCTATGTCAGGAAG+AGG + chr8_3:66234045-66234064 Msa1303250:CDS 50.0%
GCTATGTCAGGAAGAGGCAA+AGG + chr8_3:66234051-66234070 Msa1303250:CDS 50.0%
ATGTCAGGAAGAGGCAAAGG+AGG + chr8_3:66234054-66234073 Msa1303250:CDS 50.0%
AGGAAGAGGCAAAGGAGGAA+AGG + chr8_3:66234059-66234078 Msa1303250:CDS 50.0%
GGAAGAGGCAAAGGAGGAAA+GGG + chr8_3:66234060-66234079 Msa1303250:CDS 50.0%
GGCAAAGGAGGAAAGGGTTT+AGG + chr8_3:66234066-66234085 Msa1303250:CDS 50.0%
GGAAAGGGTTTAGGAAAGGG+AGG + chr8_3:66234075-66234094 Msa1303250:CDS 50.0%
AGGAGCAAAACGACACCGTA+AGG + chr8_3:66234095-66234114 Msa1303250:CDS 50.0%
TGTTGTCGCGGAGAACCTTA+CGG - chr8_3:66234113-66234132 None:intergenic 50.0%
GTTCTCCGCGACAACATTCA+GGG + chr8_3:66234117-66234136 Msa1303250:CDS 50.0%
ATTCGTCGTCTTGCAAGACG+TGG + chr8_3:66234156-66234175 Msa1303250:CDS 50.0%
GGTGGTGTGAAACGTATCAG+TGG + chr8_3:66234177-66234196 Msa1303250:CDS 50.0%
TGTTTACGCTCTCAAGAGGC+AGG + chr8_3:66234314-66234333 Msa1303250:CDS 50.0%
GTTTACGCTCTCAAGAGGCA+GGG + chr8_3:66234315-66234334 Msa1303250:CDS 50.0%
AGGCAGGGAAGGACTCTTTA+CGG + chr8_3:66234330-66234349 Msa1303250:CDS 50.0%
AGGACTCTTTACGGATTCGG+TGG + chr8_3:66234339-66234358 Msa1303250:CDS 50.0%
GTCGCAACAGACCCATGGAT+TGG - chr8_3:66231051-66231070 None:intergenic 55.0%
CATCCTCCGCCTTAGAAGCA+AGG + chr8_3:66231932-66231951 Msa1303250:intron 55.0%
!! TTCCCTTGCTTCTAAGGCGG+AGG - chr8_3:66231938-66231957 None:intergenic 55.0%
CCGAACAGGACATGAATCCG+AGG + chr8_3:66232788-66232807 Msa1303250:intron 55.0%
GGAGAGAGTAGTATCCCACG+TGG + chr8_3:66233626-66233645 Msa1303250:intron 55.0%
TTGGTGGAGAGATTGTGGGG+CGG - chr8_3:66233847-66233866 None:intergenic 55.0%
GGTTCTCCGCGACAACATTC+AGG + chr8_3:66234116-66234135 Msa1303250:CDS 55.0%
CTTGCAAGACGACGAATCGC+AGG - chr8_3:66234153-66234172 None:intergenic 55.0%
ACACCCACAAGGAACGGCTC+TGG + chr8_3:66232983-66233002 Msa1303250:intron 60.0%
GAGATTGTGGGGCGGATCGA+TGG - chr8_3:66233839-66233858 None:intergenic 60.0%
CGTCGTCTTGCAAGACGTGG+TGG + chr8_3:66234159-66234178 Msa1303250:CDS 60.0%
ACGCTCTCAAGAGGCAGGGA+AGG + chr8_3:66234319-66234338 Msa1303250:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 66230901 66234547 66230901 ID=Msa1303250;Name=Msa1303250
chr8_3 mRNA 66230901 66234547 66230901 ID=Msa1303250-mRNA-1;Parent=Msa1303250;Name=Msa1303250-mRNA-1;_AED=0.29;_eAED=0.30;_QI=0|0.5|0.66|1|0|0|3|146|119
chr8_3 exon 66230901 66230909 66230901 ID=Msa1303250-mRNA-1:exon:20137;Parent=Msa1303250-mRNA-1
chr8_3 exon 66234015 66234420 66234015 ID=Msa1303250-mRNA-1:exon:20138;Parent=Msa1303250-mRNA-1
chr8_3 exon 66234457 66234547 66234457 ID=Msa1303250-mRNA-1:exon:20139;Parent=Msa1303250-mRNA-1
chr8_3 CDS 66230901 66230909 66230901 ID=Msa1303250-mRNA-1:cds;Parent=Msa1303250-mRNA-1
chr8_3 CDS 66234015 66234365 66234015 ID=Msa1303250-mRNA-1:cds;Parent=Msa1303250-mRNA-1
chr8_3 three_prime_UTR 66234366 66234420 66234366 ID=Msa1303250-mRNA-1:three_prime_utr;Parent=Msa1303250-mRNA-1
chr8_3 three_prime_UTR 66234457 66234547 66234457 ID=Msa1303250-mRNA-1:three_prime_utr;Parent=Msa1303250-mRNA-1
Gene Sequence

>Msa1303250

ATGTTAATATTCAATCTCAAAAGAGAGAAAAACTCAACTTTCGCAGCTATGTCAGGAAGAGGCAAAGGAGGAAAGGGTTTAGGAAAGGGAGGAGCAAAACGACACCGTAAGGTTCTCCGCGACAACATTCAGGGAATTACAAAGCCTGCGATTCGTCGTCTTGCAAGACGTGGTGGTGTGAAACGTATCAGTGGCTTAATCTATGAAGAAACTCGTGGTGTTCTCAAAATCTTTCTTGAGAATGTGATTCGTGATGCTGTCACATACACTGAACATGCTCGCCGTAAAACTGTTACTGCGATGGATGTTGTTTACGCTCTCAAGAGGCAGGGAAGGACTCTTTACGGATTCGGTGGTTAG

Protein sequence

>Msa1303250

MLIFNLKREKNSTFAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*