AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0321270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0321270 MtrunA17_Chr2g0298001 97.773 449 10 0 11 459 156 604 0.0 928
Msa0321270 MtrunA17_Chr4g0072181 80.533 375 67 1 64 432 1 375 0.0 634
Msa0321270 MtrunA17_Chr4g0072161 78.329 383 80 2 14 393 28 410 0.0 614
Msa0321270 MtrunA17_Chr4g0072141 87.342 316 40 0 137 452 1 316 0.0 590
Msa0321270 MtrunA17_Chr8g0335841 37.953 469 231 8 7 448 142 577 1.03e-100 312
Msa0321270 MtrunA17_Chr4g0072151 70.000 90 16 2 13 96 117 201 7.41e-30 116
Msa0321270 MtrunA17_Chr2g0308881 64.789 71 23 1 367 437 16 84 1.12e-21 90.1
Msa0321270 MtrunA17_Chr4g0072171 74.510 51 13 0 308 358 4 54 2.90e-20 84.0
Msa0321270 MtrunA17_Chr1g0150111 22.921 445 297 13 9 443 125 533 1.16e-16 82.4
Msa0321270 MtrunA17_Chr8g0391331 25.694 144 105 2 96 238 197 339 1.98e-11 66.2
Msa0321270 MtrunA17_Chr4g0067881 25.694 144 105 2 96 238 195 337 4.47e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0321270 AT3G11710.1 80.092 437 86 1 11 447 174 609 0.0 754
Msa0321270 AT3G13490.1 39.368 475 219 10 7 448 163 601 4.08e-100 312
Msa0321270 AT3G30805.1 67.606 71 19 2 390 456 71 141 8.99e-24 97.8
Msa0321270 AT4G26870.1 24.286 420 273 14 32 443 142 524 7.18e-19 89.7
Msa0321270 AT4G31180.1 23.460 422 274 16 32 443 168 550 2.02e-14 75.9
Msa0321270 AT4G31180.2 23.460 422 274 16 32 443 168 550 2.02e-14 75.9
Msa0321270 AT4G33760.2 27.273 165 111 3 82 238 42 205 1.34e-12 70.1
Msa0321270 AT4G33760.1 27.273 165 111 3 82 238 178 341 1.62e-12 70.1

Find 131 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCTGTAAATGATTTAAT+TGG 0.136876 2_4:+22484736 None:intergenic
ATGAAATTGGAAAACAATTT+AGG 0.158648 2_4:-22486931 Msa0321270:CDS
CTGAACCGTGTTTATGAAAT+TGG 0.191056 2_4:-22486944 Msa0321270:CDS
CCAACTGCTGGTTGGGGTTT+GGG 0.197534 2_4:-22484937 Msa0321270:CDS
ACCAACTGCTGGTTGGGGTT+TGG 0.235019 2_4:-22484938 Msa0321270:CDS
TCTGGAAAAGCTTGATTTCT+TGG 0.255435 2_4:-22487192 Msa0321270:CDS
GTCCCAATTAAATCATTTAC+AGG 0.260995 2_4:-22484739 Msa0321270:intron
TTCAGCGCTCGTCAAGTCTT+TGG 0.273924 2_4:+22486457 None:intergenic
AGACAGCACCACAAAAGTTT+TGG 0.284056 2_4:+22488314 None:intergenic
ACCCTTCAAAGCTCTCAATA+AGG 0.287805 2_4:+22483851 None:intergenic
ATCTAACTTGTTGGTGTGAT+TGG 0.308152 2_4:-22483788 Msa0321270:three_prime_UTR
CTAAAATCATTTCTTATGTT+AGG 0.308337 2_4:-22487220 Msa0321270:CDS
TCGGGATTCCTGGTCTTTCC+TGG 0.312552 2_4:+22488225 None:intergenic
AACAAACGCGCAGTTGTTTC+AGG 0.313133 2_4:+22486380 None:intergenic
CTGTTTCAGATCTAACTTGT+TGG 0.314260 2_4:-22483797 Msa0321270:three_prime_UTR
TATGGAACAATACGGAAATT+TGG 0.318962 2_4:+22483692 None:intergenic
AGTGTATGCTTCGGGATTCC+TGG 0.320278 2_4:+22488215 None:intergenic
TTTGCCACCAACTGCTGGTT+GGG 0.328326 2_4:-22484944 Msa0321270:CDS
CACGACATCTTGAGGTTTCA+TGG 0.333865 2_4:+22484761 None:intergenic
TAGATACCGGTTACGCCATT+TGG 0.338665 2_4:-22487288 Msa0321270:CDS
GTTGGCATCACAGGGTTTCC+AGG 0.345455 2_4:-22488824 Msa0321270:intron
TCGACTTTACTCCACCATTC+AGG 0.346664 2_4:-22486616 Msa0321270:intron
GCCAAAGGACTCATTATCTC+TGG 0.349903 2_4:+22485369 None:intergenic
CAGAGGTTCGAGAAATATTC+AGG 0.351833 2_4:-22487250 Msa0321270:CDS
GGAGTAAAGTCGATTTCAAT+AGG 0.352799 2_4:+22486626 None:intergenic
TCAGCGCTCGTCAAGTCTTT+GGG 0.360897 2_4:+22486458 None:intergenic
TCTTTCAGAGTGTATGCTTC+GGG 0.379888 2_4:+22488207 None:intergenic
GTCTTTCAGAGTGTATGCTT+CGG 0.386185 2_4:+22488206 None:intergenic
TGAAACAACTGCGCGTTTGT+TGG 0.389362 2_4:-22486378 Msa0321270:CDS
TCAAATCCAAATGGCGTAAC+CGG 0.406882 2_4:+22487282 None:intergenic
AACCTGTAAATGATTTAATT+GGG 0.410484 2_4:+22484737 None:intergenic
AACTCACAGGTAGTAAATTC+AGG 0.416154 2_4:+22486881 None:intergenic
ACCCTTATTGAGAGCTTTGA+AGG 0.421469 2_4:-22483853 Msa0321270:three_prime_UTR
AGAACTCTTTCTCAAGAAGT+TGG 0.434467 2_4:-22486978 Msa0321270:CDS
GGTGATATTGTTGGCATCAC+AGG 0.435627 2_4:-22488833 Msa0321270:CDS
GACTGATTCACAAAATATCA+AGG 0.437902 2_4:-22484890 Msa0321270:intron
CTTGTTATATTGCAGCTTGT+GGG 0.438111 2_4:-22485441 Msa0321270:intron
CCCTTCAAAGCTCTCAATAA+GGG 0.443165 2_4:+22483852 None:intergenic
GCATCTCAGGATCGGCAATC+AGG 0.444447 2_4:-22485021 Msa0321270:intron
CTGCTGCCGCTGATAATGCA+TGG 0.445634 2_4:-22488251 Msa0321270:CDS
AAATCAGACTTAAATGAGGC+TGG 0.449207 2_4:-22488887 Msa0321270:CDS
CCAGCAATCATGTTCATCAT+AGG 0.449515 2_4:+22487073 None:intergenic
AACTGCGCGTTTGTTGGATA+AGG 0.450942 2_4:-22486372 Msa0321270:intron
TTTCTCAAGAAGTTGGTTGT+CGG 0.457983 2_4:-22486971 Msa0321270:CDS
AACTTCTTGAGAAAGAGTTC+TGG 0.463364 2_4:+22486980 None:intergenic
TGGAAAACAATTTAGGAATG+AGG 0.465055 2_4:-22486924 Msa0321270:CDS
AATCTTTGCCGTTGTACCAC+AGG 0.473425 2_4:+22485166 None:intergenic
CATAAGTATAACAAATAATA+CGG 0.475699 2_4:+22483746 None:intergenic
TCATTAAGTCATTGTAGTCC+TGG 0.476452 2_4:+22486846 None:intergenic
CGCGCAGTTGTTTCAGGAGG+GGG 0.478600 2_4:+22486386 None:intergenic
CCTATGATGAACATGATTGC+TGG 0.480055 2_4:-22487073 Msa0321270:CDS
GGAAAAGCTTGATTTCTTGG+AGG 0.481870 2_4:-22487189 Msa0321270:intron
TGAGTTCTACATGGCTTACC+AGG 0.482987 2_4:-22486864 Msa0321270:CDS
CCCAGAGATAATGAGTCCTT+TGG 0.485249 2_4:-22485370 Msa0321270:CDS
ACATCTTGAGGTTTCATGGC+AGG 0.488702 2_4:+22484765 None:intergenic
TTACGGGTATCTGACACATA+TGG 0.495351 2_4:+22483674 None:intergenic
CTCAAGAAGTTGGTTGTCGG+TGG 0.497652 2_4:-22486968 Msa0321270:CDS
TGAAGCTAATCAATATCTAA+AGG 0.499766 2_4:-22486438 Msa0321270:CDS
TGCTGCCGCTGATAATGCAT+GGG 0.500447 2_4:-22488250 Msa0321270:CDS
TACTACCTGTGAGTTCTACA+TGG 0.502707 2_4:-22486873 Msa0321270:CDS
ACAATTCAAAACGTTCAGTC+AGG 0.503303 2_4:+22485322 None:intergenic
AGAAGGATTGACATGATTGA+AGG 0.506536 2_4:-22486509 Msa0321270:CDS
GCTGATAATGCATGGGTACC+AGG 0.508685 2_4:-22488243 Msa0321270:CDS
GGAAAACAATTTAGGAATGA+GGG 0.509278 2_4:-22486923 Msa0321270:CDS
TTGTTATATTGCAGCTTGTG+GGG 0.518871 2_4:-22485440 Msa0321270:intron
TATGGTTTGCCACCAACTGC+TGG 0.519190 2_4:-22484949 Msa0321270:CDS
TATTAAGCATCAAATCCAAA+TGG 0.524059 2_4:+22487273 None:intergenic
CCAAAGGACTCATTATCTCT+GGG 0.525728 2_4:+22485370 None:intergenic
GTGATATTGTTGGCATCACA+GGG 0.528568 2_4:-22488832 Msa0321270:CDS
GGGTGGTTTATGATGAATGT+AGG 0.530400 2_4:+22485390 None:intergenic
TCAAAACGTTCAGTCAGGCC+TGG 0.531441 2_4:+22485327 None:intergenic
TCATTATGATGAGTTACAAA+TGG 0.532542 2_4:+22487034 None:intergenic
TCTTATAGGAAACTAGATAC+CGG 0.534162 2_4:-22487301 Msa0321270:intron
TTGCCACCAACTGCTGGTTG+GGG 0.535671 2_4:-22484943 Msa0321270:CDS
CTGACACATATGGAACAATA+CGG 0.535914 2_4:+22483684 None:intergenic
TTTGATTTCGTACTTCAAGC+AGG 0.536453 2_4:+22486412 None:intergenic
GTTGGGGTTTGGGTATTGAT+CGG 0.540838 2_4:-22484927 Msa0321270:CDS
GTTTGCCACCAACTGCTGGT+TGG 0.542444 2_4:-22484945 Msa0321270:CDS
TGACGACGAAGCAATGGCCT+TGG 0.543500 2_4:-22484998 Msa0321270:CDS
CACCACGCTTCACATTAGAA+TGG 0.550558 2_4:+22488852 None:intergenic
TTAATTGCCCAGGCAAAAGC+AGG 0.551126 2_4:-22488359 Msa0321270:intron
CATCTTGAGGTTTCATGGCA+GGG 0.551240 2_4:+22484766 None:intergenic
TTCGAGAAATATTCAGGACT+AGG 0.551672 2_4:-22487244 Msa0321270:CDS
GATCTGTGCCACTTTGCCAA+AGG 0.552477 2_4:+22485354 None:intergenic
ATTGTCTGCATATGATGCCT+AGG 0.553922 2_4:-22488290 Msa0321270:CDS
GAAATGCAAGATTCTTGAGA+TGG 0.554154 2_4:-22483930 Msa0321270:three_prime_UTR
GTGAAGCGTGGTGATATTGT+TGG 0.556325 2_4:-22488842 Msa0321270:CDS
AATCAGACTTAAATGAGGCT+GGG 0.556471 2_4:-22488886 Msa0321270:CDS
TATGGTGTATGAACTTACAA+AGG 0.559124 2_4:-22486693 Msa0321270:CDS
AAACCCCAACCAGCAGTTGG+TGG 0.560727 2_4:+22484940 None:intergenic
TTGCTGGTGGAGCTGCTGCT+CGG 0.561208 2_4:-22487057 Msa0321270:CDS
TGCCCAGGCAAAAGCAGGAA+GGG 0.562692 2_4:-22488354 Msa0321270:intron
AAAATCAAGTATCATGCAGA+TGG 0.563651 2_4:-22486662 Msa0321270:CDS
GAGTAAAGTCGATTTCAATA+GGG 0.569876 2_4:+22486627 None:intergenic
TGTGCAAAATGTTTCGTCCA+AGG 0.570692 2_4:+22484981 None:intergenic
AATTGGGACACGACATCTTG+AGG 0.573397 2_4:+22484753 None:intergenic
CCCTTATTGAGAGCTTTGAA+GGG 0.574479 2_4:-22483852 Msa0321270:three_prime_UTR
ATCTTTGCCGTTGTACCACA+GGG 0.576007 2_4:+22485167 None:intergenic
ATCAGGTGACGACGAAGCAA+TGG 0.576297 2_4:-22485004 Msa0321270:CDS
ATGGTGTATGAACTTACAAA+GGG 0.577118 2_4:-22486692 Msa0321270:CDS
GATTGAAGGACTAGAGGAGA+TGG 0.578488 2_4:-22486495 Msa0321270:CDS
TAATGAGTCCTTTGGCAAAG+TGG 0.580424 2_4:-22485362 Msa0321270:CDS
AACGCGCAGTTGTTTCAGGA+GGG 0.582229 2_4:+22486384 None:intergenic
GCCCAGGCAAAAGCAGGAAG+GGG 0.585020 2_4:-22488353 Msa0321270:intron
CCCAGGCAAAAGCAGGAAGG+GGG 0.588849 2_4:-22488352 Msa0321270:intron
GGATTTGATGCTTAATACAG+AGG 0.589305 2_4:-22487267 Msa0321270:CDS
CCCAAACCCCAACCAGCAGT+TGG 0.589937 2_4:+22484937 None:intergenic
CATGGGTACCAGGAAAGACC+AGG 0.595012 2_4:-22488233 Msa0321270:CDS
ATGCACACAACACACCTGAA+TGG 0.598541 2_4:+22486602 None:intergenic
ATTGTTTATCAACAAACATG+AGG 0.601110 2_4:-22485304 Msa0321270:intron
TTGCCCAGGCAAAAGCAGGA+AGG 0.601542 2_4:-22488355 Msa0321270:intron
CACACAACACACCTGAATGG+TGG 0.605501 2_4:+22486605 None:intergenic
AAGATTTGCTGATCAACTCA+AGG 0.608986 2_4:-22485149 Msa0321270:intron
TGAATGACCCTGTGGTACAA+CGG 0.609536 2_4:-22485174 Msa0321270:CDS
AAACGCGCAGTTGTTTCAGG+AGG 0.613190 2_4:+22486383 None:intergenic
GTAAGCCATGTAGAACTCAC+AGG 0.615426 2_4:+22486868 None:intergenic
TGACATGATTGAAGGACTAG+AGG 0.616183 2_4:-22486501 Msa0321270:CDS
GAAGGACTAGAGGAGATGGC+AGG 0.616562 2_4:-22486491 Msa0321270:CDS
CAGTAAATCAGACTTAAATG+AGG 0.619051 2_4:-22488891 Msa0321270:CDS
ACGCGCAGTTGTTTCAGGAG+GGG 0.645803 2_4:+22486385 None:intergenic
GTCCATTCTAATGTGAAGCG+TGG 0.650854 2_4:-22488854 Msa0321270:CDS
ATGATGAACATGATTGCTGG+TGG 0.667461 2_4:-22487070 Msa0321270:CDS
AAGTGGCACAGATCAAAACC+AGG 0.673243 2_4:-22485345 Msa0321270:CDS
AGCATACACTCTGAAAGACC+AGG 0.674383 2_4:-22488202 Msa0321270:intron
TCATGCAGATGGTCTTGACA+AGG 0.674921 2_4:-22486651 Msa0321270:CDS
AAGGACTCATTATCTCTGGG+TGG 0.680107 2_4:+22485373 None:intergenic
TGGTACCCATGCATTATCAG+CGG 0.683189 2_4:+22488245 None:intergenic
TCAAGTCTTTGGGAATACTG+AGG 0.686954 2_4:+22486468 None:intergenic
ATAACAGAGGACATGTTGAG+CGG 0.694394 2_4:-22486821 Msa0321270:intron
TGACTTAATGAAGATAACAG+AGG 0.700515 2_4:-22486834 Msa0321270:CDS
CACTGAATTGAATGACCCTG+TGG 0.748793 2_4:-22485182 Msa0321270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATTATAATATCATTTTAA+AGG - chr2_4:22484420-22484439 Msa0321270:intron 10.0%
!!! TATGTAATAATTTTTCATTT+TGG + chr2_4:22485084-22485103 None:intergenic 10.0%
!! AAAATGAAAAATTATTACAT+AGG - chr2_4:22485083-22485102 Msa0321270:intron 10.0%
!! ATTTATGATTTAAAAATTAG+AGG - chr2_4:22487173-22487192 Msa0321270:intron 10.0%
!! TTATTATTTCATAGAAAATA+TGG + chr2_4:22487745-22487764 None:intergenic 10.0%
!!! ATACTATATATCTTAATTTT+AGG + chr2_4:22488507-22488526 None:intergenic 10.0%
!! TTAATTAATACATAATAAGT+AGG + chr2_4:22488628-22488647 None:intergenic 10.0%
!! AATTCACAAAAAAAATAATA+AGG + chr2_4:22488994-22489013 None:intergenic 10.0%
!! TTTATTTAAATCCTACTAAT+TGG - chr2_4:22484337-22484356 Msa0321270:intron 15.0%
!! TTATTTAAATCCTACTAATT+GGG - chr2_4:22484338-22484357 Msa0321270:intron 15.0%
!! TACATCAAATAGAAAAATAT+TGG + chr2_4:22484364-22484383 None:intergenic 15.0%
!!! TTCTTTTTCAAATTTATAGT+TGG - chr2_4:22484846-22484865 Msa0321270:intron 15.0%
!!! TTATATTTTATGCTATAGTT+TGG - chr2_4:22484959-22484978 Msa0321270:CDS 15.0%
!!! AAAAATGTACATTTCATTTT+AGG - chr2_4:22485421-22485440 Msa0321270:CDS 15.0%
!!! ATCATTTTGAAATATTGATT+TGG - chr2_4:22486265-22486284 Msa0321270:intron 15.0%
!!! TAATCAAGTTTTACATAAAA+GGG + chr2_4:22486526-22486545 None:intergenic 15.0%
!!! ATAATCAAGTTTTACATAAA+AGG + chr2_4:22486527-22486546 None:intergenic 15.0%
!! AAAAATTTCTATGAGAATAA+AGG - chr2_4:22486845-22486864 Msa0321270:CDS 15.0%
!! AAAATTTCTATGAGAATAAA+GGG - chr2_4:22486846-22486865 Msa0321270:CDS 15.0%
!! AAAAAAATCAATCATATCAA+AGG + chr2_4:22487095-22487114 None:intergenic 15.0%
!! ACATTAAAAACTAAAGTTAT+GGG + chr2_4:22487127-22487146 None:intergenic 15.0%
!! AACATTAAAAACTAAAGTTA+TGG + chr2_4:22487128-22487147 None:intergenic 15.0%
!!! TCTACTCTTAAAATTTTATT+TGG + chr2_4:22487203-22487222 None:intergenic 15.0%
!!! TAAAATTTTAAGAGTAGATT+TGG - chr2_4:22487205-22487224 Msa0321270:CDS 15.0%
!! CATAAGTATAACAAATAATA+CGG + chr2_4:22489069-22489088 None:intergenic 15.0%
!! CTTTGACATAACAATAAATA+AGG - chr2_4:22484087-22484106 Msa0321270:intron 20.0%
!! TTAGAAATGTATTAACTCTT+TGG - chr2_4:22484129-22484148 Msa0321270:intron 20.0%
!!! TGTTACTTAGTTTCAAAATT+TGG - chr2_4:22484291-22484310 Msa0321270:intron 20.0%
!!! TTTTCTATTTGATGTATACT+TGG - chr2_4:22484368-22484387 Msa0321270:intron 20.0%
!! GATACTATCTTATTAAATGT+TGG - chr2_4:22484717-22484736 Msa0321270:intron 20.0%
!! TTAAATATATAACAAAAGCC+AGG + chr2_4:22484929-22484948 None:intergenic 20.0%
!! AACTAATATATTTAAACTCG+AGG - chr2_4:22485156-22485175 Msa0321270:CDS 20.0%
!!! ACTCAATTATCTTTTCTTAT+AGG - chr2_4:22485497-22485516 Msa0321270:intron 20.0%
!! CTAAAATCATTTCTTATGTT+AGG - chr2_4:22485592-22485611 Msa0321270:intron 20.0%
!! ATGAAATTGGAAAACAATTT+AGG - chr2_4:22485881-22485900 Msa0321270:intron 20.0%
!!! TTACAATAGCACAATTTTTT+TGG - chr2_4:22486562-22486581 Msa0321270:intron 20.0%
!!! TACAATAGCACAATTTTTTT+GGG - chr2_4:22486563-22486582 Msa0321270:intron 20.0%
!!! TATTCATATTCTAGAGTTTT+AGG - chr2_4:22486612-22486631 Msa0321270:intron 20.0%
!! TTTACAAAGACAAATGTTTA+CGG + chr2_4:22486745-22486764 None:intergenic 20.0%
!! TACACATAAAATTCATTAAC+AGG + chr2_4:22486929-22486948 None:intergenic 20.0%
!!! CATGAATGATATCTTTTTTT+TGG + chr2_4:22487272-22487291 None:intergenic 20.0%
!! CAAAAAAAAGATATCATTCA+TGG - chr2_4:22487270-22487289 Msa0321270:CDS 20.0%
!! AACCTGTAAATGATTTAATT+GGG + chr2_4:22488078-22488097 None:intergenic 20.0%
!! AAACCTGTAAATGATTTAAT+TGG + chr2_4:22488079-22488098 None:intergenic 20.0%
!!! CTAATTAATTTGTATCAACT+TGG - chr2_4:22488348-22488367 Msa0321270:CDS 20.0%
!! TTATTAATAATATTACACGG+TGG - chr2_4:22488675-22488694 Msa0321270:intron 20.0%
! ACATCTTGAAAATTTGGAAA+AGG + chr2_4:22483776-22483795 None:intergenic 25.0%
!!! TCCAAATTTTCAAGATGTTT+TGG - chr2_4:22483778-22483797 Msa0321270:three_prime_UTR 25.0%
! TCTTTCATGTATAATTTAGC+AGG - chr2_4:22483871-22483890 Msa0321270:three_prime_UTR 25.0%
! AAACAAAATAATAAGAGTCC+TGG + chr2_4:22484033-22484052 None:intergenic 25.0%
! AAAGAATTACAGACTTCATA+TGG + chr2_4:22484071-22484090 None:intergenic 25.0%
!! TGTATTAACTCTTTGGAAAT+AGG - chr2_4:22484136-22484155 Msa0321270:intron 25.0%
!! AAACTATTCTATTTTCAGAC+TGG - chr2_4:22484202-22484221 Msa0321270:intron 25.0%
!! AACTATTCTATTTTCAGACT+GGG - chr2_4:22484203-22484222 Msa0321270:intron 25.0%
! TACTTAGTTTCAAAATTTGG+AGG - chr2_4:22484294-22484313 Msa0321270:intron 25.0%
! ACTTAGTTTCAAAATTTGGA+GGG - chr2_4:22484295-22484314 Msa0321270:intron 25.0%
! AAGGTAAATAAATGCACATA+AGG + chr2_4:22484882-22484901 None:intergenic 25.0%
! TTATGTGCATTTATTTACCT+TGG - chr2_4:22484881-22484900 Msa0321270:intron 25.0%
! ATATCAAATGACTTTAGCAT+GGG - chr2_4:22485215-22485234 Msa0321270:intron 25.0%
!! TTTTCGTGTATTGAAAGATA+AGG - chr2_4:22485283-22485302 Msa0321270:intron 25.0%
! TATTAAGCATCAAATCCAAA+TGG + chr2_4:22485542-22485561 None:intergenic 25.0%
! TCATTATGATGAGTTACAAA+TGG + chr2_4:22485781-22485800 None:intergenic 25.0%
!! GTTTTCCAATTTCATAAACA+CGG + chr2_4:22485876-22485895 None:intergenic 25.0%
! GGATTGTTTATTATTACAGA+AGG - chr2_4:22486286-22486305 Msa0321270:intron 25.0%
! TGAAGCTAATCAATATCTAA+AGG - chr2_4:22486374-22486393 Msa0321270:CDS 25.0%
!! AAAATTGTGCTATTGTAACA+AGG + chr2_4:22486560-22486579 None:intergenic 25.0%
!!! ATTCTAGAGTTTTAGGTATA+TGG - chr2_4:22486619-22486638 Msa0321270:CDS 25.0%
! GATAATTTACATATTAGACC+AGG - chr2_4:22486646-22486665 Msa0321270:CDS 25.0%
!!! TTAGTTTTCTGTGTTATGTT+TGG - chr2_4:22486683-22486702 Msa0321270:CDS 25.0%
! GAATTACCACTTATATTTAG+TGG + chr2_4:22486967-22486986 None:intergenic 25.0%
! ATTGTTTATCAACAAACATG+AGG - chr2_4:22487508-22487527 Msa0321270:intron 25.0%
! AAATAACAAAAACAGTGATC+AGG + chr2_4:22487591-22487610 None:intergenic 25.0%
!!! ATCTGCATGTTCATTTTTTT+TGG - chr2_4:22487974-22487993 Msa0321270:intron 25.0%
!! CTTATAATTTTCTGTCCTTT+TGG - chr2_4:22488003-22488022 Msa0321270:intron 25.0%
!!! ACCATAAATCTGGTTTTAAT+GGG + chr2_4:22488211-22488230 None:intergenic 25.0%
!!! AACCATAAATCTGGTTTTAA+TGG + chr2_4:22488212-22488231 None:intergenic 25.0%
! TGAAATTCAAACCATAAATC+TGG + chr2_4:22488221-22488240 None:intergenic 25.0%
! ATTTGTATCAACTTGGTAAA+TGG - chr2_4:22488355-22488374 Msa0321270:intron 25.0%
!! AGCATTGTATTATGATTTTG+GGG + chr2_4:22488384-22488403 None:intergenic 25.0%
!!! GAGCATTGTATTATGATTTT+GGG + chr2_4:22488385-22488404 None:intergenic 25.0%
!!! AGAGCATTGTATTATGATTT+TGG + chr2_4:22488386-22488405 None:intergenic 25.0%
!!! TTGAAGCATTTTTAAAAGAG+TGG - chr2_4:22488709-22488728 Msa0321270:intron 25.0%
! AATAAACAACTTACTCAACT+TGG + chr2_4:22488832-22488851 None:intergenic 25.0%
!! CTAACCTAGAAGTATTTGTT+TGG - chr2_4:22483750-22483769 Msa0321270:three_prime_UTR 30.0%
GCCAAAACATCTTGAAAATT+TGG + chr2_4:22483782-22483801 None:intergenic 30.0%
CAGTAAATCAGACTTAAATG+AGG - chr2_4:22483921-22483940 Msa0321270:three_prime_UTR 30.0%
AAATTAAGTGAAGTCCTATC+AGG - chr2_4:22484162-22484181 Msa0321270:intron 30.0%
AAAATATTGGCCCAATTAGT+AGG + chr2_4:22484351-22484370 None:intergenic 30.0%
! TATTTTCCCCAAAACTTTTG+TGG - chr2_4:22484490-22484509 Msa0321270:intron 30.0%
!! TAACCCTCTAAGATAGTATA+TGG + chr2_4:22484687-22484706 None:intergenic 30.0%
TATCTTAGAGGGTTATAATG+AGG - chr2_4:22484692-22484711 Msa0321270:intron 30.0%
! TGCTATAGTTTGGTGAATTT+AGG - chr2_4:22484969-22484988 Msa0321270:CDS 30.0%
GATATCAAATGACTTTAGCA+TGG - chr2_4:22485214-22485233 Msa0321270:intron 30.0%
TATACATAGCAGAATAATGC+TGG + chr2_4:22485320-22485339 None:intergenic 30.0%
! TTTTGATAAACCTTTCTCTG+TGG - chr2_4:22485349-22485368 Msa0321270:CDS 30.0%
TCTTATAGGAAACTAGATAC+CGG - chr2_4:22485511-22485530 Msa0321270:intron 30.0%
! TTCTTATGTTAGGAGTTTTC+TGG - chr2_4:22485602-22485621 Msa0321270:intron 30.0%
TGGAAAACAATTTAGGAATG+AGG - chr2_4:22485888-22485907 Msa0321270:intron 30.0%
GGAAAACAATTTAGGAATGA+GGG - chr2_4:22485889-22485908 Msa0321270:intron 30.0%
TGACTTAATGAAGATAACAG+AGG - chr2_4:22485978-22485997 Msa0321270:intron 30.0%
TTGAAACCATTGAATAGGTA+TGG - chr2_4:22486101-22486120 Msa0321270:intron 30.0%
TATGGTGTATGAACTTACAA+AGG - chr2_4:22486119-22486138 Msa0321270:intron 30.0%
ATGGTGTATGAACTTACAAA+GGG - chr2_4:22486120-22486139 Msa0321270:intron 30.0%
AAAATCAAGTATCATGCAGA+TGG - chr2_4:22486150-22486169 Msa0321270:intron 30.0%
! GAGTAAAGTCGATTTCAATA+GGG + chr2_4:22486188-22486207 None:intergenic 30.0%
! GTATCATTTTCATTTTCTCC+TGG - chr2_4:22486462-22486481 Msa0321270:CDS 30.0%
!! ATTTTCTCCTGGCTTTTTTT+TGG - chr2_4:22486473-22486492 Msa0321270:CDS 30.0%
!! TTTTCTCCTGGCTTTTTTTT+GGG - chr2_4:22486474-22486493 Msa0321270:CDS 30.0%
ATTATACCCAAAAAAAAGCC+AGG + chr2_4:22486483-22486502 None:intergenic 30.0%
ATGAAATAGTTATCGATGAG+AGG - chr2_4:22486710-22486729 Msa0321270:intron 30.0%
! CTTTTGCCACTAAATATAAG+TGG - chr2_4:22486958-22486977 Msa0321270:CDS 30.0%
TCTTACAGATAGATACATGA+AGG + chr2_4:22487042-22487061 None:intergenic 30.0%
CCATGAATGATATCTAAAGA+TGG + chr2_4:22487242-22487261 None:intergenic 30.0%
CCATCTTTAGATATCATTCA+TGG - chr2_4:22487239-22487258 Msa0321270:CDS 30.0%
ACAAACATGAGGTAATATCA+TGG - chr2_4:22487519-22487538 Msa0321270:intron 30.0%
GTAATTTAACATATCGAAGC+AGG + chr2_4:22487704-22487723 None:intergenic 30.0%
!!! TTTTGTTTGTTTTGCATCTC+AGG - chr2_4:22487778-22487797 Msa0321270:intron 30.0%
! GACTGATTCACAAAATATCA+AGG - chr2_4:22487922-22487941 Msa0321270:intron 30.0%
GTCCCAATTAAATCATTTAC+AGG - chr2_4:22488073-22488092 Msa0321270:intron 30.0%
!!! AATCTGGTTTTAATGGGTTT+TGG + chr2_4:22488205-22488224 None:intergenic 30.0%
ACCCATTAAAACCAGATTTA+TGG - chr2_4:22488207-22488226 Msa0321270:CDS 30.0%
! TTTTGAACCAATTGCAAAAC+TGG - chr2_4:22488292-22488311 Msa0321270:CDS 30.0%
TTTGAACCAATTGCAAAACT+GGG - chr2_4:22488293-22488312 Msa0321270:CDS 30.0%
! AAAAATCCCAGTTTTGCAAT+TGG + chr2_4:22488302-22488321 None:intergenic 30.0%
! AATTGCAAAACTGGGATTTT+TGG - chr2_4:22488301-22488320 Msa0321270:CDS 30.0%
! AATACAATGCTCTGTGTTTT+TGG - chr2_4:22488393-22488412 Msa0321270:intron 30.0%
CAAATTGCAGTGTAAAAACT+TGG + chr2_4:22488801-22488820 None:intergenic 30.0%
!!! TCTTTGCTCTATTGATTTTC+AGG - chr2_4:22488852-22488871 Msa0321270:CDS 30.0%
TATGGAACAATACGGAAATT+TGG + chr2_4:22489123-22489142 None:intergenic 30.0%
AGATTTGACTCCTATTACCT+TGG - chr2_4:22483720-22483739 Msa0321270:three_prime_UTR 35.0%
TAGTCAAACACCAAGGTAAT+AGG + chr2_4:22483733-22483752 None:intergenic 35.0%
AAGGCCAAACAAATACTTCT+AGG + chr2_4:22483757-22483776 None:intergenic 35.0%
AAATCAGACTTAAATGAGGC+TGG - chr2_4:22483925-22483944 Msa0321270:three_prime_UTR 35.0%
AATCAGACTTAAATGAGGCT+GGG - chr2_4:22483926-22483945 Msa0321270:three_prime_UTR 35.0%
AGTATATAGCAACACAAACC+TGG + chr2_4:22484009-22484028 None:intergenic 35.0%
! TTGTGTTGCTATATACTTCC+AGG - chr2_4:22484012-22484031 Msa0321270:intron 35.0%
ACTATGCAAACTATCCTGAT+AGG + chr2_4:22484179-22484198 None:intergenic 35.0%
GTTTGCAATTGTCTCATGAA+TGG + chr2_4:22484243-22484262 None:intergenic 35.0%
!! TTTTCCTTGTTTAATTGCCC+AGG - chr2_4:22484443-22484462 Msa0321270:intron 35.0%
GCAATTCATGCTATAATACC+TGG + chr2_4:22484631-22484650 None:intergenic 35.0%
TCTGCCATATACTATCTTAG+AGG - chr2_4:22484680-22484699 Msa0321270:intron 35.0%
CTGCCATATACTATCTTAGA+GGG - chr2_4:22484681-22484700 Msa0321270:intron 35.0%
TCTAAATGCTATCCACCATA+GGG + chr2_4:22484760-22484779 None:intergenic 35.0%
ATCTAAATGCTATCCACCAT+AGG + chr2_4:22484761-22484780 None:intergenic 35.0%
! TGGTGGATAGCATTTAGATT+AGG - chr2_4:22484762-22484781 Msa0321270:CDS 35.0%
GGTGGATAGCATTTAGATTA+GGG - chr2_4:22484763-22484782 Msa0321270:CDS 35.0%
! CACTGACTATAAAGAATCCA+AGG + chr2_4:22484901-22484920 None:intergenic 35.0%
AAGCTTCAGAATTGCAATAC+AGG + chr2_4:22485241-22485260 None:intergenic 35.0%
TCGTGTATTGAAAGATAAGG+TGG - chr2_4:22485286-22485305 Msa0321270:intron 35.0%
GGATTTGATGCTTAATACAG+AGG - chr2_4:22485545-22485564 Msa0321270:intron 35.0%
TTCGAGAAATATTCAGGACT+AGG - chr2_4:22485568-22485587 Msa0321270:intron 35.0%
TCTGGAAAAGCTTGATTTCT+TGG - chr2_4:22485620-22485639 Msa0321270:intron 35.0%
TACCTTGAGTATCCTTATGT+TGG - chr2_4:22485655-22485674 Msa0321270:intron 35.0%
ATCCAACATAAGGATACTCA+AGG + chr2_4:22485660-22485679 None:intergenic 35.0%
ATGGAAGGAAAGAAATCACA+GGG + chr2_4:22485683-22485702 None:intergenic 35.0%
AATGGAAGGAAAGAAATCAC+AGG + chr2_4:22485684-22485703 None:intergenic 35.0%
AAAGTAGGTGAATGAATGGA+AGG + chr2_4:22485698-22485717 None:intergenic 35.0%
TGGAAAAGTAGGTGAATGAA+TGG + chr2_4:22485702-22485721 None:intergenic 35.0%
AACTTCTTGAGAAAGAGTTC+TGG + chr2_4:22485835-22485854 None:intergenic 35.0%
AGAACTCTTTCTCAAGAAGT+TGG - chr2_4:22485834-22485853 Msa0321270:intron 35.0%
! TTTCTCAAGAAGTTGGTTGT+CGG - chr2_4:22485841-22485860 Msa0321270:intron 35.0%
CTGAACCGTGTTTATGAAAT+TGG - chr2_4:22485868-22485887 Msa0321270:intron 35.0%
AACTCACAGGTAGTAAATTC+AGG + chr2_4:22485934-22485953 None:intergenic 35.0%
TCATTAAGTCATTGTAGTCC+TGG + chr2_4:22485969-22485988 None:intergenic 35.0%
TCGTGTTGAAACCATTGAAT+AGG - chr2_4:22486096-22486115 Msa0321270:intron 35.0%
CATACACCATACCTATTCAA+TGG + chr2_4:22486110-22486129 None:intergenic 35.0%
! GGAGTAAAGTCGATTTCAAT+AGG + chr2_4:22486189-22486208 None:intergenic 35.0%
AGAAGGATTGACATGATTGA+AGG - chr2_4:22486303-22486322 Msa0321270:intron 35.0%
! TTTGATTTCGTACTTCAAGC+AGG + chr2_4:22486403-22486422 None:intergenic 35.0%
AAATAGTTATCGATGAGAGG+AGG - chr2_4:22486713-22486732 Msa0321270:intron 35.0%
TTGCTTAAGCTTGACTAAAC+CGG + chr2_4:22486875-22486894 None:intergenic 35.0%
TGTACTTCTTTCCTGTATCT+GGG - chr2_4:22487014-22487033 Msa0321270:CDS 35.0%
! TCTTGTTATATTGCAGCTTG+TGG - chr2_4:22487370-22487389 Msa0321270:intron 35.0%
! CTTGTTATATTGCAGCTTGT+GGG - chr2_4:22487371-22487390 Msa0321270:intron 35.0%
TTGTTATATTGCAGCTTGTG+GGG - chr2_4:22487372-22487391 Msa0321270:intron 35.0%
ACAATTCAAAACGTTCAGTC+AGG + chr2_4:22487493-22487512 None:intergenic 35.0%
!! AAGATTTGCTGATCAACTCA+AGG - chr2_4:22487663-22487682 Msa0321270:intron 35.0%
!!! TTTGTTTTGCATCTCAGGAT+CGG - chr2_4:22487783-22487802 Msa0321270:intron 35.0%
AACATGCAGATTGATAGAGA+TGG + chr2_4:22487965-22487984 None:intergenic 35.0%
!! TTTTCTGTCCTTTTGGTTAC+AGG - chr2_4:22488010-22488029 Msa0321270:intron 35.0%
GTTTAATCTACATGACTGCA+TGG - chr2_4:22488123-22488142 Msa0321270:intron 35.0%
ACCTAAAATGAAGCAATGCT+TGG - chr2_4:22488443-22488462 Msa0321270:intron 35.0%
CCTAAAATGAAGCAATGCTT+GGG - chr2_4:22488444-22488463 Msa0321270:intron 35.0%
!!! AAGCAATGCTTGGGTTTTTT+GGG - chr2_4:22488453-22488472 Msa0321270:intron 35.0%
AGTATGTCTGCAGCATAAAA+TGG - chr2_4:22488522-22488541 Msa0321270:intron 35.0%
AGTGGCTAGAATTGTTTGAA+GGG - chr2_4:22488727-22488746 Msa0321270:intron 35.0%
CTAGAATTGTTTGAAGGGAA+GGG - chr2_4:22488732-22488751 Msa0321270:intron 35.0%
GAAATGCAAGATTCTTGAGA+TGG - chr2_4:22488882-22488901 Msa0321270:CDS 35.0%
! CTGTTTCAGATCTAACTTGT+TGG - chr2_4:22489015-22489034 Msa0321270:intron 35.0%
!! ATCTAACTTGTTGGTGTGAT+TGG - chr2_4:22489024-22489043 Msa0321270:intron 35.0%
CTGACACATATGGAACAATA+CGG + chr2_4:22489131-22489150 None:intergenic 35.0%
! TCTAGGTTAGTCAAACACCA+AGG + chr2_4:22483740-22483759 None:intergenic 40.0%
GTGATATTGTTGGCATCACA+GGG - chr2_4:22483980-22483999 Msa0321270:intron 40.0%
! TTGTCTCATGAATGGTAACG+AGG + chr2_4:22484235-22484254 None:intergenic 40.0%
TTTGCCTGGGCAATTAAACA+AGG + chr2_4:22484450-22484469 None:intergenic 40.0%
! ACAGCACCACAAAAGTTTTG+GGG + chr2_4:22484499-22484518 None:intergenic 40.0%
! GACAGCACCACAAAAGTTTT+GGG + chr2_4:22484500-22484519 None:intergenic 40.0%
! AGACAGCACCACAAAAGTTT+TGG + chr2_4:22484501-22484520 None:intergenic 40.0%
ATTGTCTGCATATGATGCCT+AGG - chr2_4:22484522-22484541 Msa0321270:intron 40.0%
TCTTTCAGAGTGTATGCTTC+GGG + chr2_4:22484608-22484627 None:intergenic 40.0%
GTCTTTCAGAGTGTATGCTT+CGG + chr2_4:22484609-22484628 None:intergenic 40.0%
TAAATGCTATCCACCATAGG+GGG + chr2_4:22484758-22484777 None:intergenic 40.0%
CTAAATGCTATCCACCATAG+GGG + chr2_4:22484759-22484778 None:intergenic 40.0%
ACTTGTCAGGTACTTAGTGA+AGG - chr2_4:22485000-22485019 Msa0321270:CDS 40.0%
TCAAATCCAAATGGCGTAAC+CGG + chr2_4:22485533-22485552 None:intergenic 40.0%
CAGAGGTTCGAGAAATATTC+AGG - chr2_4:22485562-22485581 Msa0321270:intron 40.0%
GGAAAAGCTTGATTTCTTGG+AGG - chr2_4:22485623-22485642 Msa0321270:intron 40.0%
AATCACAGGGATCCAACATA+AGG + chr2_4:22485670-22485689 None:intergenic 40.0%
CCAGCAATCATGTTCATCAT+AGG + chr2_4:22485742-22485761 None:intergenic 40.0%
CCTATGATGAACATGATTGC+TGG - chr2_4:22485739-22485758 Msa0321270:intron 40.0%
ATGATGAACATGATTGCTGG+TGG - chr2_4:22485742-22485761 Msa0321270:intron 40.0%
TACTACCTGTGAGTTCTACA+TGG - chr2_4:22485939-22485958 Msa0321270:intron 40.0%
ATAACAGAGGACATGTTGAG+CGG - chr2_4:22485991-22486010 Msa0321270:intron 40.0%
TGTGCATCATTTGTCACTGA+TGG - chr2_4:22486226-22486245 Msa0321270:intron 40.0%
TGACATGATTGAAGGACTAG+AGG - chr2_4:22486311-22486330 Msa0321270:intron 40.0%
! TCAAGTCTTTGGGAATACTG+AGG + chr2_4:22486347-22486366 None:intergenic 40.0%
CTGTACTTCTTTCCTGTATC+TGG - chr2_4:22487013-22487032 Msa0321270:CDS 40.0%
! AGAGTAGATTTGGAGCTGAA+TGG - chr2_4:22487215-22487234 Msa0321270:CDS 40.0%
GGGTGGTTTATGATGAATGT+AGG + chr2_4:22487425-22487444 None:intergenic 40.0%
CCAAAGGACTCATTATCTCT+GGG + chr2_4:22487445-22487464 None:intergenic 40.0%
TAATGAGTCCTTTGGCAAAG+TGG - chr2_4:22487450-22487469 Msa0321270:intron 40.0%
ATTACCTATCCTCAAGCTGT+TGG - chr2_4:22487719-22487738 Msa0321270:intron 40.0%
AAAATATGGCCAACAGCTTG+AGG + chr2_4:22487731-22487750 None:intergenic 40.0%
TGTGCAAAATGTTTCGTCCA+AGG + chr2_4:22487834-22487853 None:intergenic 40.0%
! CGAAACATTTTGCACAGCTT+TGG - chr2_4:22487838-22487857 Msa0321270:intron 40.0%
!!! TTTTGCACAGCTTTGGAGTA+TGG - chr2_4:22487845-22487864 Msa0321270:intron 40.0%
AAGAACCTCCTGTAACCAAA+AGG + chr2_4:22488021-22488040 None:intergenic 40.0%
! GTACTTTCCTAGGAAAGTGT+GGG - chr2_4:22488149-22488168 Msa0321270:intron 40.0%
TGTCGAAAACAAACCAGTTC+TGG + chr2_4:22488266-22488285 None:intergenic 40.0%
!!! CTGGTTTGTTTTCGACAAAC+TGG - chr2_4:22488269-22488288 Msa0321270:CDS 40.0%
!! AACTGGGATTTTTGGAAGTC+TGG - chr2_4:22488309-22488328 Msa0321270:CDS 40.0%
!! CCCAAGCATTGCTTCATTTT+AGG + chr2_4:22488447-22488466 None:intergenic 40.0%
!!! GAAGCAATGCTTGGGTTTTT+TGG - chr2_4:22488452-22488471 Msa0321270:intron 40.0%
ATGTCTGCAGCATAAAATGG+TGG - chr2_4:22488525-22488544 Msa0321270:intron 40.0%
GAGTGGCTAGAATTGTTTGA+AGG - chr2_4:22488726-22488745 Msa0321270:intron 40.0%
GCTAGAATTGTTTGAAGGGA+AGG - chr2_4:22488731-22488750 Msa0321270:intron 40.0%
AATTGTTTGAAGGGAAGGGA+AGG - chr2_4:22488736-22488755 Msa0321270:intron 40.0%
ATTGTTTGAAGGGAAGGGAA+GGG - chr2_4:22488737-22488756 Msa0321270:intron 40.0%
! ACCCTTATTGAGAGCTTTGA+AGG - chr2_4:22488959-22488978 Msa0321270:intron 40.0%
CCCTTCAAAGCTCTCAATAA+GGG + chr2_4:22488963-22488982 None:intergenic 40.0%
!! CCCTTATTGAGAGCTTTGAA+GGG - chr2_4:22488960-22488979 Msa0321270:intron 40.0%
ACCCTTCAAAGCTCTCAATA+AGG + chr2_4:22488964-22488983 None:intergenic 40.0%
GTCCATTCTAATGTGAAGCG+TGG - chr2_4:22483958-22483977 Msa0321270:intron 45.0%
CACCACGCTTCACATTAGAA+TGG + chr2_4:22483963-22483982 None:intergenic 45.0%
GTGAAGCGTGGTGATATTGT+TGG - chr2_4:22483970-22483989 Msa0321270:intron 45.0%
GGTGATATTGTTGGCATCAC+AGG - chr2_4:22483979-22483998 Msa0321270:intron 45.0%
TTAATTGCCCAGGCAAAAGC+AGG - chr2_4:22484453-22484472 Msa0321270:intron 45.0%
TGGTACCCATGCATTATCAG+CGG + chr2_4:22484570-22484589 None:intergenic 45.0%
! AGCATACACTCTGAAAGACC+AGG - chr2_4:22484610-22484629 Msa0321270:intron 45.0%
TGCAATTTACCTTCCCCCTA+TGG - chr2_4:22484742-22484761 Msa0321270:CDS 45.0%
AATTTACCTTCCCCCTATGG+TGG - chr2_4:22484745-22484764 Msa0321270:CDS 45.0%
TTTATAGTCAGTGCGCTACC+TGG - chr2_4:22484908-22484927 Msa0321270:CDS 45.0%
TTAGGTAGCTGCAACTTGTC+AGG - chr2_4:22484987-22485006 Msa0321270:CDS 45.0%
TGTTCAGCATCCACAGAGAA+AGG + chr2_4:22485362-22485381 None:intergenic 45.0%
! TAGATACCGGTTACGCCATT+TGG - chr2_4:22485524-22485543 Msa0321270:intron 45.0%
! AACCTGAGTGGTGGAAAAGT+AGG + chr2_4:22485713-22485732 None:intergenic 45.0%
CATAGGTGTTTCAACCTGAG+TGG + chr2_4:22485725-22485744 None:intergenic 45.0%
GTAAGCCATGTAGAACTCAC+AGG + chr2_4:22485947-22485966 None:intergenic 45.0%
TGAGTTCTACATGGCTTACC+AGG - chr2_4:22485948-22485967 Msa0321270:intron 45.0%
! TTGAGCGGTGAGCATTTTCT+AGG - chr2_4:22486006-22486025 Msa0321270:intron 45.0%
! TCATGCAGATGGTCTTGACA+AGG - chr2_4:22486161-22486180 Msa0321270:intron 45.0%
TCGACTTTACTCCACCATTC+AGG - chr2_4:22486196-22486215 Msa0321270:intron 45.0%
ATGCACACAACACACCTGAA+TGG + chr2_4:22486213-22486232 None:intergenic 45.0%
GATTGAAGGACTAGAGGAGA+TGG - chr2_4:22486317-22486336 Msa0321270:intron 45.0%
! AACAAACGCGCAGTTGTTTC+AGG + chr2_4:22486435-22486454 None:intergenic 45.0%
TGAAACAACTGCGCGTTTGT+TGG - chr2_4:22486434-22486453 Msa0321270:CDS 45.0%
! AACTGCGCGTTTGTTGGATA+AGG - chr2_4:22486440-22486459 Msa0321270:CDS 45.0%
CTAACGCTGAAATCTTCTCC+TGG + chr2_4:22486667-22486686 None:intergenic 45.0%
GTATCAGCAGAGCTCTTAAC+TGG + chr2_4:22486803-22486822 None:intergenic 45.0%
CTATGAGAATAAAGGGCAGC+CGG - chr2_4:22486853-22486872 Msa0321270:CDS 45.0%
ACATGAAGGAACCCAGATAC+AGG + chr2_4:22487028-22487047 None:intergenic 45.0%
! TGCATTTTCTCCACGCTACA+CGG + chr2_4:22487338-22487357 None:intergenic 45.0%
AAGGACTCATTATCTCTGGG+TGG + chr2_4:22487442-22487461 None:intergenic 45.0%
CCCAGAGATAATGAGTCCTT+TGG - chr2_4:22487442-22487461 Msa0321270:intron 45.0%
GCCAAAGGACTCATTATCTC+TGG + chr2_4:22487446-22487465 None:intergenic 45.0%
AAGTGGCACAGATCAAAACC+AGG - chr2_4:22487467-22487486 Msa0321270:intron 45.0%
CACTGAATTGAATGACCCTG+TGG - chr2_4:22487630-22487649 Msa0321270:intron 45.0%
TGAATGACCCTGTGGTACAA+CGG - chr2_4:22487638-22487657 Msa0321270:intron 45.0%
ATCTTTGCCGTTGTACCACA+GGG + chr2_4:22487648-22487667 None:intergenic 45.0%
AATCTTTGCCGTTGTACCAC+AGG + chr2_4:22487649-22487668 None:intergenic 45.0%
!! GTTGGGGTTTGGGTATTGAT+CGG - chr2_4:22487885-22487904 Msa0321270:intron 45.0%
!! TCTGTCCTTTTGGTTACAGG+AGG - chr2_4:22488013-22488032 Msa0321270:intron 45.0%
CATCTTGAGGTTTCATGGCA+GGG + chr2_4:22488049-22488068 None:intergenic 45.0%
ACATCTTGAGGTTTCATGGC+AGG + chr2_4:22488050-22488069 None:intergenic 45.0%
CACGACATCTTGAGGTTTCA+TGG + chr2_4:22488054-22488073 None:intergenic 45.0%
AATTGGGACACGACATCTTG+AGG + chr2_4:22488062-22488081 None:intergenic 45.0%
TGCATGGTACGTACTTTCCT+AGG - chr2_4:22488139-22488158 Msa0321270:intron 45.0%
CGTACTTTCCTAGGAAAGTG+TGG - chr2_4:22488148-22488167 Msa0321270:intron 45.0%
!! AAACAAACCAGTTCTGGAGG+AGG + chr2_4:22488260-22488279 None:intergenic 45.0%
! CGAAAACAAACCAGTTCTGG+AGG + chr2_4:22488263-22488282 None:intergenic 45.0%
AGGGAAGTGACACAGTCAAT+AGG - chr2_4:22488756-22488775 Msa0321270:intron 45.0%
GGGAAGTGACACAGTCAATA+GGG - chr2_4:22488757-22488776 Msa0321270:intron 45.0%
!! TTATTATTAATAATATTACA+CGG - chr2_4:22488672-22488691 Msa0321270:intron 5.0%
! GCAGCAGCAGATTTTTGCCT+AGG + chr2_4:22484542-22484561 None:intergenic 50.0%
! TGCTGCCGCTGATAATGCAT+GGG - chr2_4:22484562-22484581 Msa0321270:intron 50.0%
! GCTGATAATGCATGGGTACC+AGG - chr2_4:22484569-22484588 Msa0321270:intron 50.0%
AGTGTATGCTTCGGGATTCC+TGG + chr2_4:22484600-22484619 None:intergenic 50.0%
!! CACCTACTTTTCCACCACTC+AGG - chr2_4:22485708-22485727 Msa0321270:intron 50.0%
AGGTGTTTCAACCTGAGTGG+TGG + chr2_4:22485722-22485741 None:intergenic 50.0%
! CTCAAGAAGTTGGTTGTCGG+TGG - chr2_4:22485844-22485863 Msa0321270:intron 50.0%
CACACAACACACCTGAATGG+TGG + chr2_4:22486210-22486229 None:intergenic 50.0%
TCAGCGCTCGTCAAGTCTTT+GGG + chr2_4:22486357-22486376 None:intergenic 50.0%
TTCAGCGCTCGTCAAGTCTT+TGG + chr2_4:22486358-22486377 None:intergenic 50.0%
! AACGCGCAGTTGTTTCAGGA+GGG + chr2_4:22486431-22486450 None:intergenic 50.0%
! AAACGCGCAGTTGTTTCAGG+AGG + chr2_4:22486432-22486451 None:intergenic 50.0%
! CATTTTCTCCACGCTACACG+GGG + chr2_4:22487336-22487355 None:intergenic 50.0%
! GCATTTTCTCCACGCTACAC+GGG + chr2_4:22487337-22487356 None:intergenic 50.0%
!! GATCTGTGCCACTTTGCCAA+AGG + chr2_4:22487461-22487480 None:intergenic 50.0%
TCAAAACGTTCAGTCAGGCC+TGG + chr2_4:22487488-22487507 None:intergenic 50.0%
ATGGCCAACAGCTTGAGGAT+AGG + chr2_4:22487726-22487745 None:intergenic 50.0%
ATCAGGTGACGACGAAGCAA+TGG - chr2_4:22487808-22487827 Msa0321270:intron 50.0%
! TATGGTTTGCCACCAACTGC+TGG - chr2_4:22487863-22487882 Msa0321270:intron 50.0%
! TTTGCCACCAACTGCTGGTT+GGG - chr2_4:22487868-22487887 Msa0321270:intron 50.0%
! TTTCCTAGGAAAGTGTGGGC+AGG - chr2_4:22488153-22488172 Msa0321270:intron 50.0%
TAACCTGCCCACACTTTCCT+AGG + chr2_4:22488159-22488178 None:intergenic 50.0%
! TAGGAAAGTGTGGGCAGGTT+AGG - chr2_4:22488158-22488177 Msa0321270:intron 50.0%
!! CAGTTCTGGAGGAGGTAATC+TGG + chr2_4:22488252-22488271 None:intergenic 50.0%
CAGATTACCTCCTCCAGAAC+TGG - chr2_4:22488250-22488269 Msa0321270:CDS 50.0%
GTTGGCATCACAGGGTTTCC+AGG - chr2_4:22483988-22484007 Msa0321270:intron 55.0%
TTGCCCAGGCAAAAGCAGGA+AGG - chr2_4:22484457-22484476 Msa0321270:intron 55.0%
TGCCCAGGCAAAAGCAGGAA+GGG - chr2_4:22484458-22484477 Msa0321270:intron 55.0%
! CTGCTGCCGCTGATAATGCA+TGG - chr2_4:22484561-22484580 Msa0321270:intron 55.0%
CATGGGTACCAGGAAAGACC+AGG - chr2_4:22484579-22484598 Msa0321270:intron 55.0%
! TCGGGATTCCTGGTCTTTCC+TGG + chr2_4:22484590-22484609 None:intergenic 55.0%
TGCTATCCACCATAGGGGGA+AGG + chr2_4:22484754-22484773 None:intergenic 55.0%
GAAGGACTAGAGGAGATGGC+AGG - chr2_4:22486321-22486340 Msa0321270:intron 55.0%
! ACGCGCAGTTGTTTCAGGAG+GGG + chr2_4:22486430-22486449 None:intergenic 55.0%
!! GCAGCTTGTGGGGCACTTTT+TGG - chr2_4:22487382-22487401 Msa0321270:intron 55.0%
!! GCTTGTGGGGCACTTTTTGG+AGG - chr2_4:22487385-22487404 Msa0321270:intron 55.0%
GCATCTCAGGATCGGCAATC+AGG - chr2_4:22487791-22487810 Msa0321270:intron 55.0%
TGACGACGAAGCAATGGCCT+TGG - chr2_4:22487814-22487833 Msa0321270:intron 55.0%
GTTTGCCACCAACTGCTGGT+TGG - chr2_4:22487867-22487886 Msa0321270:intron 55.0%
! TTGCCACCAACTGCTGGTTG+GGG - chr2_4:22487869-22487888 Msa0321270:intron 55.0%
AAACCCCAACCAGCAGTTGG+TGG + chr2_4:22487875-22487894 None:intergenic 55.0%
! ACCAACTGCTGGTTGGGGTT+TGG - chr2_4:22487874-22487893 Msa0321270:intron 55.0%
! CCAACTGCTGGTTGGGGTTT+GGG - chr2_4:22487875-22487894 Msa0321270:intron 55.0%
GCCCAGGCAAAAGCAGGAAG+GGG - chr2_4:22484459-22484478 Msa0321270:intron 60.0%
!! CCCCCTTCCTGCTTTTGCCT+GGG + chr2_4:22484463-22484482 None:intergenic 60.0%
CCCAGGCAAAAGCAGGAAGG+GGG - chr2_4:22484460-22484479 Msa0321270:intron 60.0%
!! TCCCCCTTCCTGCTTTTGCC+TGG + chr2_4:22484464-22484483 None:intergenic 60.0%
TTGCTGGTGGAGCTGCTGCT+CGG - chr2_4:22485755-22485774 Msa0321270:intron 60.0%
! CGCGCAGTTGTTTCAGGAGG+GGG + chr2_4:22486429-22486448 None:intergenic 60.0%
GTAGCAAACCCCGTGTAGCG+TGG - chr2_4:22487325-22487344 Msa0321270:intron 60.0%
CCCAAACCCCAACCAGCAGT+TGG + chr2_4:22487878-22487897 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 22483677 22489157 22483677 ID=Msa0321270;Name=Msa0321270
chr2_4 mRNA 22483677 22489157 22483677 ID=Msa0321270-mRNA-1;Parent=Msa0321270;Name=Msa0321270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.90|0.83|0.91|1|1|12|278|459
chr2_4 exon 22483677 22483960 22483677 ID=Msa0321270-mRNA-1:exon:8296;Parent=Msa0321270-mRNA-1
chr2_4 exon 22484740 22484802 22484740 ID=Msa0321270-mRNA-1:exon:8295;Parent=Msa0321270-mRNA-1
chr2_4 exon 22484891 22485034 22484891 ID=Msa0321270-mRNA-1:exon:8294;Parent=Msa0321270-mRNA-1
chr2_4 exon 22485150 22485218 22485150 ID=Msa0321270-mRNA-1:exon:8293;Parent=Msa0321270-mRNA-1
chr2_4 exon 22485305 22485448 22485305 ID=Msa0321270-mRNA-1:exon:8292;Parent=Msa0321270-mRNA-1
chr2_4 exon 22486373 22486529 22486373 ID=Msa0321270-mRNA-1:exon:8291;Parent=Msa0321270-mRNA-1
chr2_4 exon 22486617 22486716 22486617 ID=Msa0321270-mRNA-1:exon:8290;Parent=Msa0321270-mRNA-1
chr2_4 exon 22486822 22487104 22486822 ID=Msa0321270-mRNA-1:exon:8289;Parent=Msa0321270-mRNA-1
chr2_4 exon 22487190 22487315 22487190 ID=Msa0321270-mRNA-1:exon:8288;Parent=Msa0321270-mRNA-1
chr2_4 exon 22488203 22488369 22488203 ID=Msa0321270-mRNA-1:exon:8287;Parent=Msa0321270-mRNA-1
chr2_4 exon 22488825 22488941 22488825 ID=Msa0321270-mRNA-1:exon:8286;Parent=Msa0321270-mRNA-1
chr2_4 exon 22489154 22489157 22489154 ID=Msa0321270-mRNA-1:exon:8285;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22489154 22489157 22489154 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22488825 22488941 22488825 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22488203 22488369 22488203 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22487190 22487315 22487190 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22486822 22487104 22486822 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22486617 22486716 22486617 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22486373 22486529 22486373 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22485305 22485448 22485305 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22485150 22485218 22485150 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22484891 22485034 22484891 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22484740 22484802 22484740 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 CDS 22483955 22483960 22483955 ID=Msa0321270-mRNA-1:cds;Parent=Msa0321270-mRNA-1
chr2_4 three_prime_UTR 22483677 22483954 22483677 ID=Msa0321270-mRNA-1:three_prime_utr;Parent=Msa0321270-mRNA-1
Gene Sequence

>Msa0321270

ATGGGACAGAAACAACTAATGTATCTCTTATGCAGTAAATCAGACTTAAATGAGGCTGGGTTTGACAAAGTCCATTCTAATGTGAAGCGTGGTGATATTGTTGGCATCACAGGGTTTCCAGGCAAAAGCAGGAAGGGGGAGCTTAGTATTTTCCCCAAAACTTTTGTGGTGCTGTCTCATTGTCTGCATATGATGCCTAGGCAAAAATCTGCTGCTGCTGCTGCCGCTGATAATGCATGGGTACCAGGAAAGACCAGGAATCCCGAAGCATACACTCTGAAAGACCAGGAAACTAGATACCGGTTACGCCATTTGGATTTGATGCTTAATACAGAGGTTCGAGAAATATTCAGGACTAGGTCTAAAATCATTTCTTATGTTAGGAGTTTTCTGGAAAAGCTTGATTTCTTGGAGGTTGAAACACCTATGATGAACATGATTGCTGGTGGAGCTGCTGCTCGGCCATTTGTAACTCATCATAATGATCTTAACATGAGATTATTCATGAGAATTGCTCCAGAACTCTTTCTCAAGAAGTTGGTTGTCGGTGGTCTGAACCGTGTTTATGAAATTGGAAAACAATTTAGGAATGAGGGCATAGATTTAACTCATAATCCTGAATTTACTACCTGTGAGTTCTACATGGCTTACCAGGACTACAATGACTTAATGAAGATAACAGAGGACATGTTGAGCGGTATGGTGTATGAACTTACAAAGGGCAGCTATAAAATCAAGTATCATGCAGATGGTCTTGACAAGGACCCTATTGAAATCGACTTTACTCCACCATTCAGAAGGATTGACATGATTGAAGGACTAGAGGAGATGGCAGGCCTCAGTATTCCCAAAGACTTGACGAGCGCTGAAGCTAATCAATATCTAAAGGATGCCTGCTTGAAGTACGAAATCAAATGTCCCCCTCCTGAAACAACTGCGCGTTTGTTGGATAAGCTTGTGGGGCACTTTTTGGAGGAAACATGTGTCAATCCTACATTCATCATAAACCACCCAGAGATAATGAGTCCTTTGGCAAAGTGGCACAGATCAAAACCAGGCCTGACTGAACGTTTTGAATTGTTTATCAACAAACATGAGCTTGCTAATGCGTACACTGAATTGAATGACCCTGTGGTACAACGGCAAAGATTTGCTGATCAACTCAAGGATCGGCAATCAGGTGACGACGAAGCAATGGCCTTGGACGAAACATTTTGCACAGCTTTGGAGTATGGTTTGCCACCAACTGCTGGTTGGGGTTTGGGTATTGATCGGTTGACTATGTTATTGACTGATTCACAAAATATCAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGATGTCGTGTCCCAATTAAATCATTTACAGGTATAA

Protein sequence

>Msa0321270

MGQKQLMYLLCSKSDLNEAGFDKVHSNVKRGDIVGITGFPGKSRKGELSIFPKTFVVLSHCLHMMPRQKSAAAAAADNAWVPGKTRNPEAYTLKDQETRYRLRHLDLMLNTEVREIFRTRSKIISYVRSFLEKLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELFLKKLVVGGLNRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYQDYNDLMKITEDMLSGMVYELTKGSYKIKYHADGLDKDPIEIDFTPPFRRIDMIEGLEEMAGLSIPKDLTSAEANQYLKDACLKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFINKHELANAYTELNDPVVQRQRFADQLKDRQSGDDEAMALDETFCTALEYGLPPTAGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQDVVSQLNHLQV*