AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0682810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682810 MtrunA17_Chr4g0029191 83.713 614 26 5 1 541 1 613 0.0 1000
Msa0682810 MtrunA17_Chr2g0301281 80.719 612 34 7 7 541 6 610 0.0 967
Msa0682810 MtrunA17_Chr2g0307471 36.293 518 256 12 38 529 84 553 3.36e-90 287
Msa0682810 MtrunA17_Chr4g0062301 36.832 505 240 14 63 534 114 572 1.08e-87 281
Msa0682810 MtrunA17_Chr2g0300291 33.634 443 204 12 28 418 117 521 9.45e-61 213
Msa0682810 MtrunA17_Chr3g0098121 33.486 436 205 12 32 418 132 531 1.20e-58 207
Msa0682810 MtrunA17_Chr4g0034411 30.544 478 259 11 57 509 89 518 1.02e-56 202
Msa0682810 MtrunA17_Chr5g0443991 31.365 491 259 13 65 528 95 534 1.06e-56 202
Msa0682810 MtrunA17_Chr3g0114081 29.492 512 273 13 38 507 7 472 2.03e-56 199
Msa0682810 MtrunA17_Chr6g0483491 32.500 400 209 9 45 415 10 377 2.83e-56 194
Msa0682810 MtrunA17_Chr7g0236841 32.250 400 210 9 45 415 10 377 1.40e-55 193
Msa0682810 MtrunA17_Chr2g0330401 34.667 375 193 12 45 393 96 444 1.40e-54 192
Msa0682810 MtrunA17_Chr3g0107851 30.789 393 218 9 45 406 117 486 1.23e-52 187
Msa0682810 MtrunA17_Chr8g0347161 31.941 407 221 11 41 415 103 485 6.65e-52 186
Msa0682810 MtrunA17_Chr2g0277821 32.041 387 215 10 45 406 504 867 1.53e-50 187
Msa0682810 MtrunA17_Chr1g0200181 31.461 356 199 8 64 393 163 499 3.06e-50 182
Msa0682810 MtrunA17_Chr1g0157691 31.461 356 199 8 64 393 165 501 4.22e-50 181
Msa0682810 MtrunA17_Chr8g0347171 30.719 459 250 12 1 415 109 543 1.94e-49 180
Msa0682810 MtrunA17_Chr8g0347151 30.751 413 230 10 37 417 198 586 2.25e-49 181
Msa0682810 MtrunA17_Chr4g0040761 30.890 382 218 7 46 405 20 377 5.21e-49 181
Msa0682810 MtrunA17_Chr7g0270131 32.143 364 203 10 45 386 232 573 7.74e-49 180
Msa0682810 MtrunA17_Chr4g0076491 30.729 384 209 9 61 406 302 666 1.52e-47 176
Msa0682810 MtrunA17_Chr6g0449741 30.645 372 223 10 61 406 264 626 3.06e-47 174
Msa0682810 MtrunA17_Chr8g0386451 29.060 468 262 14 19 444 262 701 1.52e-46 174
Msa0682810 MtrunA17_Chr7g0271121 31.443 388 209 9 39 397 100 459 5.28e-45 169
Msa0682810 MtrunA17_Chr2g0293631 31.472 394 217 11 31 400 484 848 2.43e-44 168
Msa0682810 MtrunA17_Chr1g0193491 30.789 393 219 10 35 397 99 468 7.93e-44 164
Msa0682810 MtrunA17_Chr6g0461751 29.268 410 235 11 20 404 122 501 8.73e-44 163
Msa0682810 MtrunA17_Chr3g0121351 29.219 397 200 10 45 393 145 508 9.34e-44 164
Msa0682810 MtrunA17_Chr1g0176041 30.311 386 219 11 45 398 154 521 1.50e-43 163
Msa0682810 MtrunA17_Chr6g0449911 29.455 404 236 12 44 422 164 543 1.78e-42 161
Msa0682810 MtrunA17_Chr6g0466611 29.708 377 213 12 45 388 142 499 2.21e-42 161
Msa0682810 MtrunA17_Chr2g0310581 28.118 441 263 10 27 439 35 449 5.35e-42 157
Msa0682810 MtrunA17_Chr3g0095031 29.306 389 221 12 27 391 77 435 1.21e-41 157
Msa0682810 MtrunA17_Chr5g0442191 27.820 399 238 8 46 419 82 455 2.38e-41 157
Msa0682810 MtrunA17_Chr4g0062321 36.032 247 116 5 136 358 5 233 3.88e-41 148
Msa0682810 MtrunA17_Chr5g0409981 29.921 381 235 9 30 393 91 456 1.97e-40 153
Msa0682810 MtrunA17_Chr4g0063551 29.688 384 215 11 46 393 141 505 9.12e-40 153
Msa0682810 MtrunA17_Chr7g0236831 28.935 432 235 11 45 406 163 592 4.95e-38 149
Msa0682810 MtrunA17_Chr1g0204391 28.822 399 223 11 38 395 37 415 9.56e-38 146
Msa0682810 MtrunA17_Chr4g0058591 32.817 323 168 10 56 353 212 510 4.05e-37 144
Msa0682810 MtrunA17_Chr2g0299681 27.481 393 236 9 45 415 41 406 3.37e-35 136
Msa0682810 MtrunA17_Chr2g0297261 25.659 417 261 9 22 416 11 400 3.67e-35 136
Msa0682810 MtrunA17_Chr8g0342861 26.807 429 263 10 9 415 7 406 2.41e-34 134
Msa0682810 MtrunA17_Chr7g0263771 28.022 364 207 11 63 401 150 483 3.75e-34 136
Msa0682810 MtrunA17_Chr6g0475251 29.412 357 206 9 65 395 122 458 6.18e-34 136
Msa0682810 MtrunA17_Chr4g0003441 28.492 358 198 12 64 393 126 453 8.47e-34 134
Msa0682810 MtrunA17_Chr2g0329931 27.735 393 235 9 45 415 41 406 9.12e-34 132
Msa0682810 MtrunA17_Chr4g0070981 26.972 393 238 10 45 415 41 406 4.49e-33 130
Msa0682810 MtrunA17_Chr7g0247191 28.324 346 197 8 64 387 168 484 1.39e-32 131
Msa0682810 MtrunA17_Chr7g0247221 27.746 346 199 8 64 387 161 477 6.59e-32 129
Msa0682810 MtrunA17_Chr7g0247181 27.746 346 199 8 64 387 158 474 7.37e-32 129
Msa0682810 MtrunA17_Chr3g0145781 28.049 410 214 16 37 393 124 505 1.54e-29 122
Msa0682810 MtrunA17_Chr8g0354761 25.610 492 295 16 34 503 2 444 2.32e-29 120
Msa0682810 MtrunA17_Chr1g0192021 25.104 482 244 15 20 417 1 449 3.47e-29 121
Msa0682810 MtrunA17_Chr4g0004301 27.487 382 205 14 83 398 70 445 4.48e-28 117
Msa0682810 MtrunA17_Chr1g0149251 25.843 356 214 11 85 415 3 333 5.55e-28 114
Msa0682810 MtrunA17_Chr5g0434301 27.225 382 206 13 83 398 70 445 1.05e-27 116
Msa0682810 MtrunA17_Chr5g0429221 25.693 397 240 12 45 415 3 370 3.21e-27 114
Msa0682810 MtrunA17_Chr1g0179761 29.397 398 198 17 42 387 77 443 1.32e-25 110
Msa0682810 MtrunA17_Chr2g0309551 28.862 246 157 6 38 272 102 340 1.48e-25 110
Msa0682810 MtrunA17_Chr2g0309551 34.737 95 62 0 313 407 430 524 9.06e-13 70.9
Msa0682810 MtrunA17_Chr4g0074521 29.863 365 204 13 57 382 90 441 1.10e-24 107
Msa0682810 MtrunA17_Chr8g0349951 36.538 156 92 3 45 200 10 158 1.81e-23 97.1
Msa0682810 MtrunA17_Chr4g0039471 32.319 263 118 12 24 274 204 418 1.29e-22 100
Msa0682810 MtrunA17_Chr1g0155201 25.714 245 151 5 173 407 14 237 7.20e-18 85.1
Msa0682810 MtrunA17_Chr8g0364251 32.642 193 109 7 45 223 91 276 1.15e-17 86.3
Msa0682810 MtrunA17_Chr8g0364251 40.260 77 45 1 311 387 457 532 2.07e-11 66.6
Msa0682810 MtrunA17_Chr3g0137901 38.636 88 53 1 319 405 71 158 7.00e-16 75.9
Msa0682810 MtrunA17_Chr0c30g0494091 31.383 188 109 5 57 233 90 268 7.08e-14 73.6
Msa0682810 MtrunA17_Chr4g0025131 29.586 169 109 5 42 208 53 213 4.65e-13 69.7
Msa0682810 MtrunA17_Chr4g0062331 35.294 136 60 5 361 494 5 114 9.06e-13 67.0
Msa0682810 MtrunA17_Chr0c09g0493491 25.243 206 136 8 38 239 85 276 1.84e-11 65.1
Msa0682810 MtrunA17_Chr6g0465771 25.243 206 136 8 38 239 85 276 9.52e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682810 AT2G40700.1 59.469 565 150 6 38 525 24 586 0.0 662
Msa0682810 AT5G65900.1 33.973 521 267 13 39 535 149 616 6.82e-85 276
Msa0682810 AT3G18600.1 34.429 517 267 13 40 531 85 554 1.94e-81 265
Msa0682810 AT4G16630.1 34.103 390 191 7 41 397 164 520 6.25e-59 209
Msa0682810 AT1G71370.1 29.522 481 258 12 61 509 32 463 2.56e-56 198
Msa0682810 AT5G54910.1 32.231 484 250 14 69 525 95 527 2.65e-56 201
Msa0682810 AT5G05450.1 28.906 512 281 13 36 509 6 472 3.99e-56 198
Msa0682810 AT5G60990.1 31.658 398 225 9 45 415 10 387 5.56e-55 192
Msa0682810 AT5G63120.2 33.053 357 190 9 62 393 182 514 3.28e-53 190
Msa0682810 AT1G20920.2 31.643 414 231 13 50 435 197 586 3.24e-52 191
Msa0682810 AT1G20920.4 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0682810 AT1G20920.6 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0682810 AT1G20920.3 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0682810 AT1G20920.7 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0682810 AT1G20920.5 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0682810 AT1G20920.1 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0682810 AT1G55150.1 32.086 374 204 11 45 393 100 448 1.09e-50 181
Msa0682810 AT1G55150.2 32.086 374 204 11 45 393 125 473 2.32e-50 181
Msa0682810 AT3G09620.2 32.461 382 200 13 50 416 403 741 4.21e-49 182
Msa0682810 AT3G09620.1 32.461 382 200 13 50 416 402 740 4.66e-49 182
Msa0682810 AT2G47330.1 32.609 368 199 10 41 386 230 570 2.13e-48 179
Msa0682810 AT5G08620.1 28.976 459 262 13 3 415 24 464 5.15e-48 176
Msa0682810 AT5G51280.1 30.239 377 213 10 45 393 147 501 2.56e-47 174
Msa0682810 AT1G77030.1 30.971 381 217 10 46 404 30 386 3.19e-47 177
Msa0682810 AT3G01540.4 31.620 389 211 12 45 406 159 519 1.13e-46 172
Msa0682810 AT3G01540.2 31.620 389 211 12 45 406 159 519 1.13e-46 172
Msa0682810 AT3G01540.3 31.620 389 211 12 45 406 159 519 1.13e-46 172
Msa0682810 AT3G01540.1 31.620 389 211 12 45 406 159 519 1.43e-46 172
Msa0682810 AT4G33370.1 31.830 377 207 11 45 393 98 452 2.63e-46 170
Msa0682810 AT5G26742.1 31.646 395 218 11 27 392 82 453 4.20e-45 170
Msa0682810 AT5G26742.2 31.646 395 218 11 27 392 82 453 4.23e-45 170
Msa0682810 AT1G31970.1 31.070 383 233 9 31 395 103 472 8.22e-45 166
Msa0682810 AT5G14610.6 30.769 390 213 13 45 406 162 522 8.97e-45 167
Msa0682810 AT5G14610.2 30.769 390 213 13 45 406 162 522 1.00e-44 167
Msa0682810 AT2G33730.1 30.458 371 227 9 61 406 329 693 1.14e-44 168
Msa0682810 AT5G08610.1 29.688 384 220 10 64 415 401 766 1.20e-44 169
Msa0682810 AT5G14610.5 30.769 390 213 13 45 406 170 530 1.43e-44 167
Msa0682810 AT3G06480.1 31.458 391 209 12 45 406 436 796 1.85e-44 169
Msa0682810 AT3G02065.3 30.691 391 212 12 45 404 111 473 3.91e-44 164
Msa0682810 AT3G02065.2 30.691 391 212 12 45 404 111 473 3.91e-44 164
Msa0682810 AT5G14610.7 30.352 369 205 11 64 406 49 391 4.98e-44 163
Msa0682810 AT5G14610.3 30.352 369 205 11 64 406 49 391 4.98e-44 163
Msa0682810 AT1G63250.1 30.405 444 239 14 69 470 352 767 6.35e-44 167
Msa0682810 AT2G42520.2 30.287 383 213 11 45 393 160 522 2.33e-43 164
Msa0682810 AT2G42520.1 30.287 383 213 11 45 393 160 522 2.33e-43 164
Msa0682810 AT2G42520.3 30.287 383 213 11 45 393 160 522 2.33e-43 164
Msa0682810 AT2G07750.1 28.455 492 287 15 18 470 349 814 2.99e-43 165
Msa0682810 AT5G14610.1 30.352 369 205 11 64 406 248 590 5.06e-43 163
Msa0682810 AT3G22310.2 28.919 370 218 8 45 392 117 463 9.78e-43 161
Msa0682810 AT3G22310.1 28.919 370 218 8 45 392 117 463 1.16e-42 161
Msa0682810 AT3G22330.1 27.628 409 250 8 34 419 94 479 1.37e-42 161
Msa0682810 AT3G58510.1 29.474 380 218 10 45 393 152 512 1.52e-42 161
Msa0682810 AT3G58510.3 29.474 380 218 10 45 393 152 512 1.52e-42 161
Msa0682810 AT3G58510.2 29.474 380 218 10 45 393 152 512 1.52e-42 161
Msa0682810 AT5G63630.1 29.974 387 215 11 64 415 73 438 1.69e-42 159
Msa0682810 AT5G26742.3 31.609 348 189 10 71 392 36 360 4.41e-42 160
Msa0682810 AT5G63630.2 29.974 387 215 11 64 415 267 632 1.80e-41 159
Msa0682810 AT3G58570.1 29.058 382 219 10 45 393 147 509 7.05e-41 157
Msa0682810 AT1G16280.1 28.467 411 242 8 13 398 28 411 7.30e-41 154
Msa0682810 AT3G02065.1 29.834 362 196 11 74 404 2 336 7.47e-40 149
Msa0682810 AT1G28180.1 29.178 353 209 6 75 406 3 335 2.94e-39 147
Msa0682810 AT3G09720.2 28.372 430 244 15 8 404 97 495 5.72e-39 150
Msa0682810 AT3G09720.1 28.372 430 244 15 8 404 97 495 5.72e-39 150
Msa0682810 AT5G63120.3 32.492 317 165 9 62 353 182 474 9.06e-39 148
Msa0682810 AT5G63120.4 32.492 317 165 9 62 353 182 474 9.06e-39 148
Msa0682810 AT5G63120.5 32.492 317 165 9 62 353 182 474 9.06e-39 148
Msa0682810 AT5G63120.1 32.198 323 170 9 62 359 182 480 9.15e-39 148
Msa0682810 AT1G12770.2 27.166 427 245 11 40 407 106 525 1.00e-38 149
Msa0682810 AT1G12770.1 27.166 427 245 11 40 407 106 525 1.00e-38 149
Msa0682810 AT4G09730.1 28.877 374 220 12 45 388 113 470 8.29e-38 147
Msa0682810 AT1G71280.2 29.204 339 175 8 61 377 33 328 2.02e-37 141
Msa0682810 AT3G19760.1 27.595 395 235 10 45 416 36 402 2.01e-36 140
Msa0682810 AT1G71280.1 29.375 320 163 6 61 358 33 311 7.25e-36 140
Msa0682810 AT3G13920.4 28.499 393 227 10 45 415 40 400 9.05e-35 135
Msa0682810 AT5G62190.1 31.092 357 199 10 59 387 107 444 9.61e-35 139
Msa0682810 AT3G13920.3 27.990 393 234 9 45 415 30 395 1.26e-34 135
Msa0682810 AT3G13920.1 27.990 393 234 9 45 415 40 405 1.85e-34 135
Msa0682810 AT3G16840.2 29.078 423 227 12 45 397 192 611 2.57e-34 138
Msa0682810 AT3G16840.1 29.078 423 227 12 45 397 191 610 2.89e-34 138
Msa0682810 AT4G00660.1 25.917 409 251 9 1 387 88 466 3.45e-34 135
Msa0682810 AT4G00660.2 25.917 409 251 9 1 387 88 466 3.45e-34 135
Msa0682810 AT5G14610.4 30.286 350 185 14 45 366 170 488 9.55e-34 134
Msa0682810 AT2G45810.1 28.324 346 197 8 64 387 173 489 1.13e-33 134
Msa0682810 AT1G54270.2 27.451 408 237 11 35 415 25 400 1.30e-33 132
Msa0682810 AT3G61240.2 27.747 364 211 9 46 387 126 459 1.35e-33 134
Msa0682810 AT3G61240.1 27.747 364 211 9 46 387 126 459 1.35e-33 134
Msa0682810 AT1G51380.1 25.854 410 248 10 35 415 6 388 1.62e-33 132
Msa0682810 AT1G54270.1 26.961 408 244 10 35 415 25 405 2.58e-33 131
Msa0682810 AT3G13920.5 27.838 370 219 8 45 393 44 386 1.80e-32 129
Msa0682810 AT3G13920.2 27.838 370 219 8 45 393 40 382 1.81e-32 129
Msa0682810 AT1G72730.1 27.005 374 225 8 64 415 60 407 2.30e-32 129
Msa0682810 AT5G11170.1 27.487 382 217 15 64 415 65 416 4.87e-32 128
Msa0682810 AT5G11200.1 27.487 382 217 15 64 415 65 416 4.87e-32 128
Msa0682810 AT3G06480.2 29.363 361 194 13 31 362 424 752 1.62e-31 130
Msa0682810 AT4G15850.1 26.650 394 192 10 83 398 73 447 2.59e-31 127
Msa0682810 AT4G34910.1 25.778 450 239 13 42 417 44 472 1.93e-29 123
Msa0682810 AT3G06980.1 29.383 405 206 17 41 393 371 747 4.28e-29 122
Msa0682810 AT5G11170.2 26.870 361 204 15 85 415 3 333 5.12e-27 112
Msa0682810 AT3G53110.1 27.273 385 213 14 42 387 89 445 9.65e-26 110
Msa0682810 AT5G19210.2 26.836 354 216 12 61 382 92 434 1.20e-22 101
Msa0682810 AT1G59990.1 31.500 200 119 7 37 223 71 265 4.36e-17 85.1
Msa0682810 AT1G59990.2 31.500 200 119 7 37 223 71 265 4.57e-17 84.7
Msa0682810 AT1G28180.2 39.316 117 68 2 75 189 3 118 2.93e-16 75.5
Msa0682810 AT1G51380.2 25.714 245 148 7 35 272 6 223 2.13e-15 77.0
Msa0682810 AT1G51380.4 25.256 293 179 9 35 315 6 270 9.58e-15 75.5
Msa0682810 AT1G51380.3 25.256 293 179 9 35 315 6 270 1.20e-14 75.5
Msa0682810 AT5G11200.2 35.294 102 64 2 316 415 374 475 1.50e-13 73.6
Msa0682810 AT5G11200.2 27.830 212 116 9 64 268 65 246 7.79e-12 68.2
Msa0682810 AT5G11200.3 35.294 102 64 2 316 415 356 457 1.78e-13 73.2
Msa0682810 AT5G11200.3 27.830 212 116 9 64 268 65 246 6.02e-12 68.6

Find 125 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGCAAGTTCTTCCATTT+TGG 0.059239 4_4:+44852310 None:intergenic
TTCTCTTCTTAGTTTGGTTT+TGG 0.175971 4_4:+44852144 None:intergenic
GGAGCTGAAAAGAATATTTA+TGG 0.227529 4_4:-44852243 Msa0682810:CDS
GATTGTTCCAGGATACATTA+TGG 0.248924 4_4:-44856995 Msa0682810:CDS
AACTGTTCGGGCACTTTATA+AGG 0.254541 4_4:+44855432 None:intergenic
ATCTCTTTCTCTTCTTAGTT+TGG 0.258176 4_4:+44852138 None:intergenic
GTTGTTTACTTTCTCATTTA+AGG 0.270100 4_4:+44855599 None:intergenic
CCTTGCTAAAATTAGCTTAG+AGG 0.298410 4_4:-44855577 Msa0682810:CDS
CTCTGCAAGTGATGAATTAT+CGG 0.323068 4_4:+44857547 None:intergenic
TGCAGGACTCAAGTGCCTTC+TGG 0.324167 4_4:+44853249 None:intergenic
TTTCAACCACTCATATTTGA+TGG 0.324737 4_4:+44851642 None:intergenic
CGGTTTCATTGGATTGTTCC+AGG 0.329885 4_4:-44857006 Msa0682810:CDS
AAAACTACTATTCACGATAA+TGG 0.332737 4_4:-44858158 Msa0682810:CDS
CACATATTCAGTGGCTTCTC+CGG 0.341245 4_4:+44854212 None:intergenic
TTCTTGGATGCAAAACTCTT+AGG 0.344976 4_4:-44854380 Msa0682810:CDS
GGGAACAGAACAATGTTTCT+TGG 0.348873 4_4:-44854396 Msa0682810:CDS
AACGCGTGAGTTATGTTTGC+AGG 0.350006 4_4:-44857058 Msa0682810:CDS
TTGTCATTGTCAGCCCAAAA+TGG 0.355307 4_4:-44852324 Msa0682810:intron
TGTATGATGCATCTAACATT+TGG 0.361040 4_4:+44854246 None:intergenic
GTTGTTATTGTCTCCTTTGT+TGG 0.365662 4_4:+44858133 None:intergenic
GTTAATTCAGAGATACATAA+AGG 0.373067 4_4:-44855412 Msa0682810:CDS
AGTTACTGCACCGGTTTCAT+TGG 0.377011 4_4:-44857017 Msa0682810:CDS
CAGCGCTCTGATGGAACATT+TGG 0.377668 4_4:-44857508 Msa0682810:intron
TCAATTCTTATTGCAACTCC+TGG 0.381359 4_4:-44855954 Msa0682810:CDS
TGCACTATAAGCCACTTTCA+TGG 0.385616 4_4:+44852053 None:intergenic
ATTGTTCCAGGATACATTAT+GGG 0.387712 4_4:-44856994 Msa0682810:CDS
TACAACATGTCTGTTTCTTC+AGG 0.394894 4_4:-44851882 Msa0682810:three_prime_UTR
GCTATTCCTGTTGTTCTCTC+TGG 0.395213 4_4:-44857887 Msa0682810:CDS
TGACACAATGACGTAGATTC+TGG 0.395330 4_4:+44851995 None:intergenic
AACAGTTCTACAAACATGTT+AGG 0.397437 4_4:-44851602 Msa0682810:three_prime_UTR
TCATCAATACCAATCATAAC+TGG 0.397709 4_4:+44855552 None:intergenic
TTGTCTATCGATGAATTTGA+AGG 0.398485 4_4:+44851919 None:intergenic
AAACAAACACCCTCCTTAGT+TGG 0.403481 4_4:-44852176 Msa0682810:CDS
ACCACGAAGTTGGTCACATA+AGG 0.412400 4_4:+44858064 None:intergenic
GTTATGGTTGTGGTGTTACT+TGG 0.415372 4_4:-44851722 Msa0682810:three_prime_UTR
TGTTCTTCAAGTGATCTAAA+AGG 0.421661 4_4:+44855928 None:intergenic
GTATCTCTGAATTAACTGTT+CGG 0.422649 4_4:+44855419 None:intergenic
GTTAATGCTGCTACGGGCAC+AGG 0.424220 4_4:-44857592 Msa0682810:CDS
CCAAGAGCAAAATGCTCTCT+TGG 0.429515 4_4:+44852292 None:intergenic
ACACCATGTTTCTGCAAGTC+TGG 0.434747 4_4:+44853386 None:intergenic
AAGTAATAGCATAGCGCTAA+AGG 0.437995 4_4:-44851942 Msa0682810:three_prime_UTR
TATCTCTGAATTAACTGTTC+GGG 0.438811 4_4:+44855420 None:intergenic
ATTTCTACCTTTGCGCAGCC+TGG 0.440548 4_4:+44856945 None:intergenic
TTGGAAAGACTTTCCAACTA+AGG 0.443030 4_4:+44852163 None:intergenic
ATTGTAATTTCATTTAGTTA+TGG 0.453467 4_4:-44851738 Msa0682810:three_prime_UTR
TCCTACGGCTGGTACTTTAC+TGG 0.456142 4_4:+44855455 None:intergenic
ACCAAGGCTAGAAAAGGAAC+AGG 0.462722 4_4:+44858097 None:intergenic
TTAGAGGATCCAGTTATGAT+TGG 0.467517 4_4:-44855561 Msa0682810:intron
ATGGTTAAGAAACTTCACTT+AGG 0.467632 4_4:-44852224 Msa0682810:CDS
TAGATTGGTTAATGCTGCTA+CGG 0.474706 4_4:-44857599 Msa0682810:CDS
GTTGAAAGTCAGAAAGAGTA+GGG 0.477217 4_4:-44851626 Msa0682810:three_prime_UTR
GAAGTTGGTCACATAAGGTT+TGG 0.478818 4_4:+44858069 None:intergenic
ACCTTATGTGACCAACTTCG+TGG 0.480142 4_4:-44858065 Msa0682810:intron
ATTTCATTTAGTTATGGTTG+TGG 0.482152 4_4:-44851732 Msa0682810:three_prime_UTR
TGACGACCAGAGAGAACAAC+AGG 0.482392 4_4:+44857881 None:intergenic
TGCAAAACTCTTAGGCTACA+TGG 0.485609 4_4:-44854372 Msa0682810:CDS
TGGTTAAGAAACTTCACTTA+GGG 0.495579 4_4:-44852223 Msa0682810:CDS
CTGGAACAATCCAATGAAAC+CGG 0.499113 4_4:+44857007 None:intergenic
CTATGCTATTACTTGATCTC+AGG 0.499446 4_4:+44851951 None:intergenic
GCTACATGGTAACATGCAAC+AGG 0.500745 4_4:-44854358 Msa0682810:CDS
GGTTGAAAGTCAGAAAGAGT+AGG 0.501447 4_4:-44851627 Msa0682810:three_prime_UTR
TTAAGGTCGCTGATAAAAGC+AGG 0.502617 4_4:+44855616 None:intergenic
AAGAGAATTCAGCGCTCTGA+TGG 0.504712 4_4:-44857517 Msa0682810:CDS
TCTACTGATGTTTCTGCCAG+AGG 0.506421 4_4:-44854279 Msa0682810:CDS
GATCACCTTGGACGAGATGC+AGG 0.511915 4_4:+44853232 None:intergenic
ATTTGGAAAATCTAAGCCTC+TGG 0.513542 4_4:+44854263 None:intergenic
GTGAAGACCAAGGCTAGAAA+AGG 0.514667 4_4:+44858091 None:intergenic
TCACCACCCATAATGTATCC+TGG 0.517161 4_4:+44856988 None:intergenic
GTAGATCAAAGGAGAAAGCC+AGG 0.517865 4_4:-44856963 Msa0682810:CDS
GCAGAAACATGGTGTCTCAC+TGG 0.522548 4_4:-44853378 Msa0682810:CDS
TTAATTCAGAGATACATAAA+GGG 0.527509 4_4:-44855411 Msa0682810:intron
ACTGCTCGACTTGGTGAAAG+AGG 0.527699 4_4:-44853452 Msa0682810:CDS
AGATTGGTTAATGCTGCTAC+GGG 0.528246 4_4:-44857598 Msa0682810:CDS
TCGTGTACACAAATTTGCGC+TGG 0.529886 4_4:-44855896 Msa0682810:CDS
GGTAAATAGTCTATTTCAGA+TGG 0.531099 4_4:+44853407 None:intergenic
TTTCACATCGCAAAGTAGAA+TGG 0.539234 4_4:-44858243 Msa0682810:exon
AGTGATGAATTATCGGAGCC+AGG 0.539986 4_4:+44857554 None:intergenic
GTAACATGCAACAGGAGGAC+AGG 0.541248 4_4:-44854350 Msa0682810:CDS
GTGCATACACAGCGCATCGT+GGG 0.541411 4_4:-44852265 Msa0682810:CDS
GTACCCTCTTCTCAAAGTGT+TGG 0.542627 4_4:-44853351 Msa0682810:CDS
GGGCACGATGATCAAGAGAA+TGG 0.542777 4_4:-44855672 Msa0682810:CDS
CACGATGCGCTGTGTATGCA+CGG 0.545291 4_4:+44852267 None:intergenic
GTTGGAAGAACTGCTCGACT+TGG 0.546043 4_4:-44853461 Msa0682810:CDS
ACATATTCAGTGGCTTCTCC+GGG 0.549147 4_4:+44854213 None:intergenic
TTCTGGAGACACAAGATCCA+TGG 0.553790 4_4:+44853266 None:intergenic
AGGGAAGACTATTGCATACC+TGG 0.555873 4_4:-44857572 Msa0682810:CDS
TTCTTCAGAAGTTACTGCAC+CGG 0.556520 4_4:-44857026 Msa0682810:CDS
AGAAAGAGTTACCACGAAGT+TGG 0.558030 4_4:+44858054 None:intergenic
TGCAAACATAACTCACGCGT+TGG 0.558456 4_4:+44857060 None:intergenic
CACGATAATGGAACCAACAA+AGG 0.560969 4_4:-44858146 Msa0682810:CDS
TGAGTCCTGCATCTCGTCCA+AGG 0.564103 4_4:-44853237 Msa0682810:intron
GAAAGACTTTCCAACTAAGG+AGG 0.566004 4_4:+44852166 None:intergenic
ATCATACAATATGATTCTCC+CGG 0.567525 4_4:-44854231 Msa0682810:CDS
GGGCACTTTATAAGGTCCTA+CGG 0.568230 4_4:+44855440 None:intergenic
CATAATGCAGACCATGAAAG+TGG 0.571012 4_4:-44852064 Msa0682810:exon
CAATTCTTATTGCAACTCCT+GGG 0.572028 4_4:-44855953 Msa0682810:CDS
TATCCAACACTTTGAGAAGA+GGG 0.573662 4_4:+44853348 None:intergenic
GGGTGGTGAAAGTAGATCAA+AGG 0.576121 4_4:-44856974 Msa0682810:CDS
TTACCAGACTTGCAGAAACA+TGG 0.576300 4_4:-44853389 Msa0682810:CDS
CTATCCAACACTTTGAGAAG+AGG 0.577028 4_4:+44853347 None:intergenic
ACTTTATAAGGTCCTACGGC+TGG 0.583960 4_4:+44855444 None:intergenic
AAGTGATCTAAAAGGCGCCC+AGG 0.584284 4_4:+44855936 None:intergenic
TGCAAGTTTGATGAAGCAAA+TGG 0.590397 4_4:-44852034 Msa0682810:three_prime_UTR
CTAAACACAAGAATGATATG+TGG 0.591842 4_4:-44851771 Msa0682810:three_prime_UTR
ATGGATCTTGTGTCTCCAGA+AGG 0.596234 4_4:-44853264 Msa0682810:CDS
GAGAAAGCCAGGCTGCGCAA+AGG 0.600911 4_4:-44856952 Msa0682810:intron
TTAATGCTGCTACGGGCACA+GGG 0.607172 4_4:-44857591 Msa0682810:CDS
AGAATGATATGTGGATGGTA+CGG 0.610232 4_4:-44851762 Msa0682810:three_prime_UTR
GCTTGAGCTTGAATCAACGT+TGG 0.610845 4_4:+44857908 None:intergenic
ACGATGAACAAGAAGACCAA+AGG 0.611078 4_4:-44858218 Msa0682810:CDS
CAAGAAGACCAAAGGCAAAG+TGG 0.615301 4_4:-44858210 Msa0682810:CDS
AAAGACTTTCCAACTAAGGA+GGG 0.615349 4_4:+44852167 None:intergenic
GTACCTGTGCACATATTCAG+TGG 0.621315 4_4:+44854203 None:intergenic
ACACAAGAATGATATGTGGA+TGG 0.627359 4_4:-44851767 Msa0682810:three_prime_UTR
AAGCCACTGAATATGTGCAC+AGG 0.634355 4_4:-44854206 Msa0682810:intron
GTTCCAGGATACATTATGGG+TGG 0.635731 4_4:-44856991 Msa0682810:CDS
TGCATACACAGCGCATCGTG+GGG 0.642958 4_4:-44852264 Msa0682810:CDS
CGTGCATACACAGCGCATCG+TGG 0.646681 4_4:-44852266 Msa0682810:CDS
TTACGACCATCAAATATGAG+TGG 0.651310 4_4:-44851648 Msa0682810:three_prime_UTR
TAAAGACAAAGCAACAACAA+TGG 0.656508 4_4:+44851539 None:intergenic
CGAATAAGAGAAAAGTTGCA+CGG 0.661018 4_4:-44852094 Msa0682810:CDS
ATAAGGTTTGGTGAAGACCA+AGG 0.664910 4_4:+44858081 None:intergenic
ACATGGTAACATGCAACAGG+AGG 0.675441 4_4:-44854355 Msa0682810:CDS
GATAAGTCGTCTACACAATG+TGG 0.692613 4_4:+44851793 None:intergenic
TCCAGTAAAGTACCAGCCGT+AGG 0.714902 4_4:-44855456 Msa0682810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTGTTTATTTATTT+TGG - chr4_4:44851800-44851819 Msa0682810:three_prime_UTR 10.0%
!!! AAAACAAAATAAGAAATTTT+TGG + chr4_4:44853449-44853468 None:intergenic 10.0%
!!! TTTTTTAAGATTATATAAAC+TGG + chr4_4:44855674-44855693 None:intergenic 10.0%
!!! TTAATATTTTTCATACTATT+TGG - chr4_4:44857085-44857104 Msa0682810:intron 10.0%
!! AAACAAAAAGATTAAAACTT+TGG + chr4_4:44851788-44851807 None:intergenic 15.0%
!! TGTTTAGAAACAAAATAAAA+AGG + chr4_4:44851908-44851927 None:intergenic 15.0%
!! GATAATATTAAGGTTTATAT+TGG - chr4_4:44851988-44852007 Msa0682810:three_prime_UTR 15.0%
!! TTGTTAAATGATTTCTTAAT+AGG - chr4_4:44852024-44852043 Msa0682810:three_prime_UTR 15.0%
!! TTCAAATCATTAATAGTTTA+AGG + chr4_4:44852060-44852079 None:intergenic 15.0%
!! AAACTATTAATGATTTGAAA+TGG - chr4_4:44852061-44852080 Msa0682810:three_prime_UTR 15.0%
!! TTTAATGAGAAAATTTAGAT+TGG - chr4_4:44852142-44852161 Msa0682810:CDS 15.0%
!!! ATCATAGTAAAAATTTGTTT+TGG + chr4_4:44852453-44852472 None:intergenic 15.0%
!! TTCAATTATTGGATAATTTA+AGG + chr4_4:44852478-44852497 None:intergenic 15.0%
!!! ATTAATTTGTTTTCACTTAA+CGG + chr4_4:44852510-44852529 None:intergenic 15.0%
!!! CACAAATTTAATTAGTTTAT+TGG - chr4_4:44852653-44852672 Msa0682810:intron 15.0%
!!! GTTCACATTTTTAAAAATAA+AGG + chr4_4:44854675-44854694 None:intergenic 15.0%
!!! TTAGATTATATTGATTTTGA+TGG + chr4_4:44854833-44854852 None:intergenic 15.0%
!! ATCAAAATCAATATAATCTA+AGG - chr4_4:44854832-44854851 Msa0682810:intron 15.0%
!! TCATTTACTGTAAATTAAAT+AGG - chr4_4:44855702-44855721 Msa0682810:CDS 15.0%
!!! AGATAATTACTAGTTTATAT+TGG - chr4_4:44855860-44855879 Msa0682810:intron 15.0%
!! TAAATTGTATCAAGATTTAA+TGG - chr4_4:44855915-44855934 Msa0682810:CDS 15.0%
!!! TTCTAGAAATATAATATGTT+TGG + chr4_4:44856096-44856115 None:intergenic 15.0%
!! TGATTGATATATTAAGAATA+AGG + chr4_4:44856889-44856908 None:intergenic 15.0%
!! CTATAACAAAAGATAAAATA+AGG + chr4_4:44857269-44857288 None:intergenic 15.0%
!! ATTGTAATTTCATTTAGTTA+TGG - chr4_4:44858018-44858037 Msa0682810:intron 15.0%
!! TTAAATCATAATTCACTTCA+TGG - chr4_4:44851747-44851766 Msa0682810:three_prime_UTR 20.0%
!! TAAATCATAATTCACTTCAT+GGG - chr4_4:44851748-44851767 Msa0682810:three_prime_UTR 20.0%
!!! TATTAATGATTTGAAATGGA+GGG - chr4_4:44852065-44852084 Msa0682810:exon 20.0%
!! AAAATTTATCTATCACCTAA+AGG - chr4_4:44853719-44853738 Msa0682810:intron 20.0%
!!! CAAGAAATACTAAATCTTTT+AGG - chr4_4:44854048-44854067 Msa0682810:intron 20.0%
!!! TTTTGTCTTTGAAATTTAGA+GGG + chr4_4:44854120-44854139 None:intergenic 20.0%
!!! TGGTATTGATGATAAAATAA+TGG - chr4_4:44854215-44854234 Msa0682810:CDS 20.0%
!! TTAATTCAGAGATACATAAA+GGG - chr4_4:44854345-44854364 Msa0682810:CDS 20.0%
!! TTAAATTATTGCTTGTCAAT+AGG - chr4_4:44854601-44854620 Msa0682810:intron 20.0%
!!! GAAGTTTTAAATCAAGTTAA+AGG - chr4_4:44855053-44855072 Msa0682810:intron 20.0%
!! TGACAGCAAAAATAAAATAA+AGG + chr4_4:44855097-44855116 None:intergenic 20.0%
!!! TTTGAAACAAATGTGATTAA+TGG + chr4_4:44855198-44855217 None:intergenic 20.0%
!! AGAAAAACAGAAGATAAATT+AGG + chr4_4:44855578-44855597 None:intergenic 20.0%
!!! ATTTATCTTCTGTTTTTCTT+TGG - chr4_4:44855579-44855598 Msa0682810:CDS 20.0%
!! AGTGAAAATGAATATTTGAA+AGG + chr4_4:44855763-44855782 None:intergenic 20.0%
!!! CTTCTATTAAATTATTGACT+TGG + chr4_4:44855828-44855847 None:intergenic 20.0%
!!! TTATATTTCTAGAATCGTAA+AGG - chr4_4:44856102-44856121 Msa0682810:intron 20.0%
!!! ATTATGATTTTTCACAAACT+GGG + chr4_4:44856215-44856234 None:intergenic 20.0%
!!! TATTATGATTTTTCACAAAC+TGG + chr4_4:44856216-44856235 None:intergenic 20.0%
!!! TTTTTTTATCCTCTTTTAGT+CGG - chr4_4:44856597-44856616 Msa0682810:intron 20.0%
!!! TTTTTGTTACATTGTTTTAG+TGG - chr4_4:44857030-44857049 Msa0682810:CDS 20.0%
!! ATAACAATATGATCCTAAAA+TGG - chr4_4:44857369-44857388 Msa0682810:intron 20.0%
!!! AAGAAACAAAAATCCATTTT+AGG + chr4_4:44857385-44857404 None:intergenic 20.0%
! AAAACTACTATTCACGATAA+TGG - chr4_4:44851598-44851617 Msa0682810:three_prime_UTR 25.0%
!!! TTATTTTGGAACAGAAAGAA+TGG - chr4_4:44851814-44851833 Msa0682810:three_prime_UTR 25.0%
!!! TATTTTGGAACAGAAAGAAT+GGG - chr4_4:44851815-44851834 Msa0682810:three_prime_UTR 25.0%
!! CTATTAATGATTTGAAATGG+AGG - chr4_4:44852064-44852083 Msa0682810:exon 25.0%
!!! TGTTGGGTTTTTTGTTTAAT+TGG - chr4_4:44852115-44852134 Msa0682810:CDS 25.0%
! AATGAAAAACAATGACACAA+TGG + chr4_4:44852308-44852327 None:intergenic 25.0%
! ACTAAAACAGTGATATTGAT+AGG + chr4_4:44852611-44852630 None:intergenic 25.0%
! AGTTGTTCAAAAATTAAACC+AGG - chr4_4:44852894-44852913 Msa0682810:intron 25.0%
!!! CATAATTTTAACTACCTAGA+AGG + chr4_4:44852975-44852994 None:intergenic 25.0%
!!! TTGTCAAGTTGATTAAACTT+TGG - chr4_4:44853474-44853493 Msa0682810:intron 25.0%
!!! CTGTTAATTTGTGAGATTAT+GGG - chr4_4:44853511-44853530 Msa0682810:intron 25.0%
! GCTTGTAATGATTCAATTAT+AGG - chr4_4:44853547-44853566 Msa0682810:intron 25.0%
! AAGAATTGATATGCCTATAT+AGG + chr4_4:44853791-44853810 None:intergenic 25.0%
!!! TTTTGCAGTATTTTGGAATT+AGG - chr4_4:44854009-44854028 Msa0682810:intron 25.0%
!!! AGTATTTTGGAATTAGGATT+TGG - chr4_4:44854015-44854034 Msa0682810:intron 25.0%
!!! GTTTTGTCTTTGAAATTTAG+AGG + chr4_4:44854121-44854140 None:intergenic 25.0%
! GTTGTTTACTTTCTCATTTA+AGG + chr4_4:44854160-44854179 None:intergenic 25.0%
! GTTAATTCAGAGATACATAA+AGG - chr4_4:44854344-44854363 Msa0682810:CDS 25.0%
!!! TTCTAAAGCATCTTTTTGAA+AGG - chr4_4:44854497-44854516 Msa0682810:intron 25.0%
!!! TCTAAAGCATCTTTTTGAAA+GGG - chr4_4:44854498-44854517 Msa0682810:intron 25.0%
! GCATAGATGAAAAATGAATT+TGG + chr4_4:44854707-44854726 None:intergenic 25.0%
!! TTTTACTTAACCGTTCAAAA+AGG - chr4_4:44854739-44854758 Msa0682810:intron 25.0%
! AGTGAAGTAAAAATGAAAGT+TGG - chr4_4:44854963-44854982 Msa0682810:intron 25.0%
!! AAAAATGAAAGTTGGTTCAA+CGG - chr4_4:44854971-44854990 Msa0682810:intron 25.0%
! ATGGAAAGAAACTAAAAATC+TGG + chr4_4:44855162-44855181 None:intergenic 25.0%
!!! AGATTTTTAGTTTCTTTCCA+TGG - chr4_4:44855161-44855180 Msa0682810:intron 25.0%
! AAAGGATGAAAAAAGGAATT+CGG + chr4_4:44855325-44855344 None:intergenic 25.0%
! GAACAGAAAGAATCAATAAT+TGG + chr4_4:44855619-44855638 None:intergenic 25.0%
! ATTTGTATTCGGATTACAAT+AGG + chr4_4:44855644-44855663 None:intergenic 25.0%
! ACTGTAAATTAAATAGGACT+AGG - chr4_4:44855708-44855727 Msa0682810:CDS 25.0%
! TTGGCTAGAATATTAAAATG+TGG - chr4_4:44855879-44855898 Msa0682810:CDS 25.0%
! ACAATGCATAATAATATGCA+AGG + chr4_4:44856033-44856052 None:intergenic 25.0%
!! TTTTAACAAACGTGAGTAAA+CGG - chr4_4:44856137-44856156 Msa0682810:intron 25.0%
! ATATTCCCATATGATTTGAA+AGG - chr4_4:44856233-44856252 Msa0682810:intron 25.0%
! TTGAAAGGCTATCTTATTAA+TGG - chr4_4:44856248-44856267 Msa0682810:intron 25.0%
! ATTCAATAAGATTAGCAATG+AGG + chr4_4:44856549-44856568 None:intergenic 25.0%
! AACTATGAAACATTTCATGT+TGG - chr4_4:44856687-44856706 Msa0682810:intron 25.0%
! AAGTTATTCTATAGAGCTTA+TGG + chr4_4:44857210-44857229 None:intergenic 25.0%
! AAGAGATTTGAGAAGAAAAA+TGG - chr4_4:44857634-44857653 Msa0682810:intron 25.0%
! AGAGATTTGAGAAGAAAAAT+GGG - chr4_4:44857635-44857654 Msa0682810:intron 25.0%
!!! TTGAAACCAACATGTTTTTA+AGG + chr4_4:44857903-44857922 None:intergenic 25.0%
! ATTTCATTTAGTTATGGTTG+TGG - chr4_4:44858024-44858043 Msa0682810:intron 25.0%
! AGTTATTTGCACAATAATGT+TGG - chr4_4:44858077-44858096 Msa0682810:CDS 25.0%
! TACTTCATGCTATAACTTGT+TGG - chr4_4:44852098-44852117 Msa0682810:CDS 30.0%
!! ACTTCATGCTATAACTTGTT+GGG - chr4_4:44852099-44852118 Msa0682810:CDS 30.0%
ACAATAGAAGCTGAACAAAT+AGG + chr4_4:44852344-44852363 None:intergenic 30.0%
TGAGAGTTGAGATAGATAAT+AGG - chr4_4:44852365-44852384 Msa0682810:intron 30.0%
TAGGTTACACTACTTAGTAT+TGG - chr4_4:44852384-44852403 Msa0682810:intron 30.0%
!!! TTGGTTTTGTCATGTTACTT+TGG - chr4_4:44852403-44852422 Msa0682810:intron 30.0%
!! TTGTCATGTTACTTTGGATA+CGG - chr4_4:44852409-44852428 Msa0682810:intron 30.0%
GGTTTCAGCTATTCAATTAT+TGG + chr4_4:44852489-44852508 None:intergenic 30.0%
ATTGTTCCAGGATACATTAT+GGG - chr4_4:44852762-44852781 Msa0682810:intron 30.0%
AATCAGAAAATGTTCTAGCA+CGG + chr4_4:44853047-44853066 None:intergenic 30.0%
TTGTGTTATAGCACAATACA+AGG + chr4_4:44853088-44853107 None:intergenic 30.0%
ACAATCTAGTGAAATTGCTT+GGG - chr4_4:44853104-44853123 Msa0682810:intron 30.0%
!! GCTGTTAATTTGTGAGATTA+TGG - chr4_4:44853510-44853529 Msa0682810:intron 30.0%
TATCTATCACCTAAAGGAAA+TGG - chr4_4:44853725-44853744 Msa0682810:intron 30.0%
TGTTCTTCAAGTGATCTAAA+AGG + chr4_4:44853831-44853850 None:intergenic 30.0%
! TAATTTTCGATGAAGCTGAT+CGG - chr4_4:44853884-44853903 Msa0682810:intron 30.0%
! CTTTTCGTTTTGCAGTATTT+TGG - chr4_4:44854002-44854021 Msa0682810:intron 30.0%
!!! TTTTAGGTTCAATGAAGACA+GGG - chr4_4:44854064-44854083 Msa0682810:intron 30.0%
TCATCAATACCAATCATAAC+TGG + chr4_4:44854207-44854226 None:intergenic 30.0%
TCAAATCTAATTCTTGACGT+TGG + chr4_4:44854243-44854262 None:intergenic 30.0%
TATCTCTGAATTAACTGTTC+GGG + chr4_4:44854339-44854358 None:intergenic 30.0%
GTATCTCTGAATTAACTGTT+CGG + chr4_4:44854340-44854359 None:intergenic 30.0%
TAAGATCATGCATACCTAAT+TGG - chr4_4:44854426-44854445 Msa0682810:intron 30.0%
CACTGCATAATAATCCAATT+AGG + chr4_4:44854443-44854462 None:intergenic 30.0%
!! ATGTCACTTACCTTTTTGAA+CGG + chr4_4:44854752-44854771 None:intergenic 30.0%
AATGATGTGACTTATAAGGA+AGG + chr4_4:44855229-44855248 None:intergenic 30.0%
GATGAATGATGTGACTTATA+AGG + chr4_4:44855233-44855252 None:intergenic 30.0%
TTTGTGGAAAGGATGAAAAA+AGG + chr4_4:44855332-44855351 None:intergenic 30.0%
!! TGCAGATTTCTCAGTTTTAA+AGG + chr4_4:44855448-44855467 None:intergenic 30.0%
ATCATACAATATGATTCTCC+CGG - chr4_4:44855525-44855544 Msa0682810:intron 30.0%
!! TCTTCTGTTTTTCTTTGGTT+AGG - chr4_4:44855584-44855603 Msa0682810:CDS 30.0%
!! CTTCTGTTTTTCTTTGGTTA+GGG - chr4_4:44855585-44855604 Msa0682810:CDS 30.0%
!! ATTGACTTGGATATGTAATC+TGG + chr4_4:44855815-44855834 None:intergenic 30.0%
ATTTCCATCATTATCCTCAT+CGG - chr4_4:44855958-44855977 Msa0682810:CDS 30.0%
!!! TTGCCTTTATGCTGTTTTTT+TGG - chr4_4:44855981-44856000 Msa0682810:intron 30.0%
!!! TGCCTTTATGCTGTTTTTTT+GGG - chr4_4:44855982-44856001 Msa0682810:intron 30.0%
TACCCAAAAAAACAGCATAA+AGG + chr4_4:44855987-44856006 None:intergenic 30.0%
TGTTTGGATAAACAGCATAA+AGG + chr4_4:44856080-44856099 None:intergenic 30.0%
TTTAACAAACGTGAGTAAAC+GGG - chr4_4:44856138-44856157 Msa0682810:intron 30.0%
GATAGCCTTTCAAATCATAT+GGG + chr4_4:44856241-44856260 None:intergenic 30.0%
AGATAGCCTTTCAAATCATA+TGG + chr4_4:44856242-44856261 None:intergenic 30.0%
GGTAAATAGTCTATTTCAGA+TGG + chr4_4:44856352-44856371 None:intergenic 30.0%
CATGTCATCGAAGTTAAATT+TGG - chr4_4:44856624-44856643 Msa0682810:intron 30.0%
! GTTAAATTTGGAATCATCGT+TGG - chr4_4:44856636-44856655 Msa0682810:intron 30.0%
ATGTTCAGTGAAAAATCACA+AGG + chr4_4:44857066-44857085 None:intergenic 30.0%
!! AAACAGTTGATGAACATGTA+TGG + chr4_4:44857176-44857195 None:intergenic 30.0%
CATATTGTTATCAACCTGTT+TGG + chr4_4:44857360-44857379 None:intergenic 30.0%
GGAGCTGAAAAGAATATTTA+TGG - chr4_4:44857513-44857532 Msa0682810:CDS 30.0%
ATGGTTAAGAAACTTCACTT+AGG - chr4_4:44857532-44857551 Msa0682810:CDS 30.0%
TGGTTAAGAAACTTCACTTA+GGG - chr4_4:44857533-44857552 Msa0682810:CDS 30.0%
!! TTCTCTTCTTAGTTTGGTTT+TGG + chr4_4:44857615-44857634 None:intergenic 30.0%
ATCTCTTTCTCTTCTTAGTT+TGG + chr4_4:44857621-44857640 None:intergenic 30.0%
TTGTCTATCGATGAATTTGA+AGG + chr4_4:44857840-44857859 None:intergenic 30.0%
CTAAACACAAGAATGATATG+TGG - chr4_4:44857985-44858004 Msa0682810:intron 30.0%
TTTCAACCACTCATATTTGA+TGG + chr4_4:44858117-44858136 None:intergenic 30.0%
AACAGTTCTACAAACATGTT+AGG - chr4_4:44858154-44858173 Msa0682810:CDS 30.0%
TAAAGACAAAGCAACAACAA+TGG + chr4_4:44858220-44858239 None:intergenic 30.0%
TTTCACATCGCAAAGTAGAA+TGG - chr4_4:44851513-44851532 Msa0682810:three_prime_UTR 35.0%
! GTTGTTATTGTCTCCTTTGT+TGG + chr4_4:44851626-44851645 None:intergenic 35.0%
! TAGATTGGTTAATGCTGCTA+CGG - chr4_4:44852157-44852176 Msa0682810:CDS 35.0%
CTCTGCAAGTGATGAATTAT+CGG + chr4_4:44852212-44852231 None:intergenic 35.0%
TAGTTTATTGGCAATAGCGT+TGG - chr4_4:44852665-44852684 Msa0682810:intron 35.0%
GATTGTTCCAGGATACATTA+TGG - chr4_4:44852761-44852780 Msa0682810:intron 35.0%
TAGTGTCATAGTATCCTTCT+AGG - chr4_4:44852958-44852977 Msa0682810:intron 35.0%
AAATGTTCTAGCACGGTATT+GGG + chr4_4:44853040-44853059 None:intergenic 35.0%
AAAATGTTCTAGCACGGTAT+TGG + chr4_4:44853041-44853060 None:intergenic 35.0%
CACAATCTAGTGAAATTGCT+TGG - chr4_4:44853103-44853122 Msa0682810:intron 35.0%
! TAATGACAGACTTGAGCTTT+TGG + chr4_4:44853222-44853241 None:intergenic 35.0%
GTACTAAAAATCACACACTG+TGG + chr4_4:44853634-44853653 None:intergenic 35.0%
TCCTACATACAATTGGCAAA+GGG + chr4_4:44853656-44853675 None:intergenic 35.0%
ATCCTACATACAATTGGCAA+AGG + chr4_4:44853657-44853676 None:intergenic 35.0%
AACCTCTGTGATTCCTATAT+AGG - chr4_4:44853775-44853794 Msa0682810:intron 35.0%
TCAATTCTTATTGCAACTCC+TGG - chr4_4:44853802-44853821 Msa0682810:intron 35.0%
CAATTCTTATTGCAACTCCT+GGG - chr4_4:44853803-44853822 Msa0682810:intron 35.0%
AACGAAAAGACAAACATGTC+AGG + chr4_4:44853991-44854010 None:intergenic 35.0%
!!! CTTTTAGGTTCAATGAAGAC+AGG - chr4_4:44854063-44854082 Msa0682810:intron 35.0%
!! CCTCTAAGCTAATTTTAGCA+AGG + chr4_4:44854182-44854201 None:intergenic 35.0%
! CCTTGCTAAAATTAGCTTAG+AGG - chr4_4:44854179-44854198 Msa0682810:intron 35.0%
TTAGAGGATCCAGTTATGAT+TGG - chr4_4:44854195-44854214 Msa0682810:intron 35.0%
TTGTCAACGAGAGTCTAATT+TGG - chr4_4:44854869-44854888 Msa0682810:intron 35.0%
TTCTTGGATGCAAAACTCTT+AGG - chr4_4:44855376-44855395 Msa0682810:intron 35.0%
!!! AGTTTTAAAGGCCTGAAAAC+TGG + chr4_4:44855436-44855455 None:intergenic 35.0%
GTAATCCGAATACAAATGCT+AGG - chr4_4:44855647-44855666 Msa0682810:CDS 35.0%
!!! TATGCTGTTTTTTTGGGTAG+TGG - chr4_4:44855988-44856007 Msa0682810:intron 35.0%
ATAATAATATGCAAGGTCCG+GGG + chr4_4:44856026-44856045 None:intergenic 35.0%
CATAATAATATGCAAGGTCC+GGG + chr4_4:44856027-44856046 None:intergenic 35.0%
GCATAATAATATGCAAGGTC+CGG + chr4_4:44856028-44856047 None:intergenic 35.0%
TTAACAAACGTGAGTAAACG+GGG - chr4_4:44856139-44856158 Msa0682810:intron 35.0%
! TATCCAACACTTTGAGAAGA+GGG + chr4_4:44856411-44856430 None:intergenic 35.0%
!! TGTTCTTTTGTGCTGACATT+GGG + chr4_4:44856438-44856457 None:intergenic 35.0%
!! TTGTTCTTTTGTGCTGACAT+TGG + chr4_4:44856439-44856458 None:intergenic 35.0%
! TTTTCATAGACATGCATCCA+TGG - chr4_4:44856473-44856492 Msa0682810:intron 35.0%
ACATGTTATCCGACTAAAAG+AGG + chr4_4:44856609-44856628 None:intergenic 35.0%
CACAGAAGAAAGGGAAAATT+AGG + chr4_4:44856807-44856826 None:intergenic 35.0%
! TTTTCCCTTTCTTCTGTGTT+TGG - chr4_4:44856809-44856828 Msa0682810:intron 35.0%
TTTCCCTTTCTTCTGTGTTT+GGG - chr4_4:44856810-44856829 Msa0682810:intron 35.0%
CAAAAACAAGCCACTAAAAC+TGG + chr4_4:44857010-44857029 None:intergenic 35.0%
ATTAAGCTGTTCATCCAAAC+AGG - chr4_4:44857343-44857362 Msa0682810:intron 35.0%
GACAATGACAAAGCAAGAAT+TGG + chr4_4:44857423-44857442 None:intergenic 35.0%
! TTGGCAAGTTCTTCCATTTT+GGG + chr4_4:44857448-44857467 None:intergenic 35.0%
AAAGACTTTCCAACTAAGGA+GGG + chr4_4:44857592-44857611 None:intergenic 35.0%
TTGGAAAGACTTTCCAACTA+AGG + chr4_4:44857596-44857615 None:intergenic 35.0%
! GCAACTTTTCTCTTATTCGA+TGG + chr4_4:44857661-44857680 None:intergenic 35.0%
CGAATAAGAGAAAAGTTGCA+CGG - chr4_4:44857662-44857681 Msa0682810:intron 35.0%
TGCAAGTTTGATGAAGCAAA+TGG - chr4_4:44857722-44857741 Msa0682810:intron 35.0%
CTATGCTATTACTTGATCTC+AGG + chr4_4:44857808-44857827 None:intergenic 35.0%
AAGTAATAGCATAGCGCTAA+AGG - chr4_4:44857814-44857833 Msa0682810:intron 35.0%
! TACAACATGTCTGTTTCTTC+AGG - chr4_4:44857874-44857893 Msa0682810:intron 35.0%
ACACAAGAATGATATGTGGA+TGG - chr4_4:44857989-44858008 Msa0682810:intron 35.0%
AGAATGATATGTGGATGGTA+CGG - chr4_4:44857994-44858013 Msa0682810:intron 35.0%
TTACGACCATCAAATATGAG+TGG - chr4_4:44858108-44858127 Msa0682810:CDS 35.0%
GTTGAAAGTCAGAAAGAGTA+GGG - chr4_4:44858130-44858149 Msa0682810:CDS 35.0%
ACGATGAACAAGAAGACCAA+AGG - chr4_4:44851538-44851557 Msa0682810:three_prime_UTR 40.0%
!! CACGATAATGGAACCAACAA+AGG - chr4_4:44851610-44851629 Msa0682810:three_prime_UTR 40.0%
!! ATAAGGTTTGGTGAAGACCA+AGG + chr4_4:44851678-44851697 None:intergenic 40.0%
! GAAGTTGGTCACATAAGGTT+TGG + chr4_4:44851690-44851709 None:intergenic 40.0%
AGAAAGAGTTACCACGAAGT+TGG + chr4_4:44851705-44851724 None:intergenic 40.0%
! AGATTGGTTAATGCTGCTAC+GGG - chr4_4:44852158-44852177 Msa0682810:CDS 40.0%
TTCTTCAGAAGTTACTGCAC+CGG - chr4_4:44852730-44852749 Msa0682810:intron 40.0%
CTGGAACAATCCAATGAAAC+CGG + chr4_4:44852752-44852771 None:intergenic 40.0%
ACCAGGAATGTTGTCGAAAA+CGG - chr4_4:44852911-44852930 Msa0682810:intron 40.0%
! TCTGTGCATACTTGTTGAGT+TGG - chr4_4:44853130-44853149 Msa0682810:intron 40.0%
!! GCATACTTGTTGAGTTGGTT+CGG - chr4_4:44853135-44853154 Msa0682810:intron 40.0%
AATATACAGAGTCCTGCTTC+TGG - chr4_4:44853166-44853185 Msa0682810:intron 40.0%
!! AGACTTGAGCTTTTGGTTGA+AGG + chr4_4:44853215-44853234 None:intergenic 40.0%
AAGGAACTAGCATCAAAGAC+TGG + chr4_4:44853279-44853298 None:intergenic 40.0%
ACAGCAACCACTTGTACAAT+GGG + chr4_4:44853311-44853330 None:intergenic 40.0%
!!! GAAATTTTTGGCAAGCGACA+AGG + chr4_4:44853437-44853456 None:intergenic 40.0%
ACCCTTTGCCAATTGTATGT+AGG - chr4_4:44853652-44853671 Msa0682810:intron 40.0%
GCCAATTGTATGTAGGATCT+CGG - chr4_4:44853659-44853678 Msa0682810:intron 40.0%
TCCGAGATCCTACATACAAT+TGG + chr4_4:44853663-44853682 None:intergenic 40.0%
TGCCTATATAGGAATCACAG+AGG + chr4_4:44853780-44853799 None:intergenic 40.0%
TTAAGGTCGCTGATAAAAGC+AGG + chr4_4:44854143-44854162 None:intergenic 40.0%
AACTGTTCGGGCACTTTATA+AGG + chr4_4:44854327-44854346 None:intergenic 40.0%
GATTATTATGCAGTGCCTTG+TGG - chr4_4:44854448-44854467 Msa0682810:intron 40.0%
ACTCTCGTTGACAATAACGA+GGG + chr4_4:44854863-44854882 None:intergenic 40.0%
!! GAGTCTAATTTGGTTCTGAG+TGG - chr4_4:44854879-44854898 Msa0682810:intron 40.0%
TAATGGCAAATGTCAGTCCA+TGG + chr4_4:44855181-44855200 None:intergenic 40.0%
!! CATTCATCTATTGACTCCAC+AGG - chr4_4:44855245-44855264 Msa0682810:intron 40.0%
GAAAAGAATAGCACAACCTG+TGG + chr4_4:44855264-44855283 None:intergenic 40.0%
CATTGTTCTGTTCCCTTCTT+CGG + chr4_4:44855355-44855374 None:intergenic 40.0%
GGGAACAGAACAATGTTTCT+TGG - chr4_4:44855360-44855379 Msa0682810:intron 40.0%
TGCAAAACTCTTAGGCTACA+TGG - chr4_4:44855384-44855403 Msa0682810:intron 40.0%
CTGGTCCTAGCATTTGTATT+CGG + chr4_4:44855655-44855674 None:intergenic 40.0%
GTTAAATCATGACGCAGAGT+TGG - chr4_4:44856277-44856296 Msa0682810:intron 40.0%
TTACCAGACTTGCAGAAACA+TGG - chr4_4:44856367-44856386 Msa0682810:intron 40.0%
! CTATCCAACACTTTGAGAAG+AGG + chr4_4:44856412-44856431 None:intergenic 40.0%
ATTAGCAATGAGGATCACCT+TGG + chr4_4:44856539-44856558 None:intergenic 40.0%
ACTCCCAAACACAGAAGAAA+GGG + chr4_4:44856816-44856835 None:intergenic 40.0%
AACTCCCAAACACAGAAGAA+AGG + chr4_4:44856817-44856836 None:intergenic 40.0%
AATGGGAGGTTAGTGAAGAA+AGG - chr4_4:44856851-44856870 Msa0682810:intron 40.0%
ATGGGAGGTTAGTGAAGAAA+GGG - chr4_4:44856852-44856871 Msa0682810:intron 40.0%
GAGCTCTTGTGAAACTGTTT+AGG - chr4_4:44857138-44857157 Msa0682810:intron 40.0%
TTGTCATTGTCAGCCCAAAA+TGG - chr4_4:44857432-44857451 Msa0682810:intron 40.0%
! CTTGGCAAGTTCTTCCATTT+TGG + chr4_4:44857449-44857468 None:intergenic 40.0%
!!! CAAGAGAGCATTTTGCTCTT+GGG - chr4_4:44857465-44857484 Msa0682810:intron 40.0%
AAACAAACACCCTCCTTAGT+TGG - chr4_4:44857580-44857599 Msa0682810:CDS 40.0%
GAAAGACTTTCCAACTAAGG+AGG + chr4_4:44857593-44857612 None:intergenic 40.0%
CATAATGCAGACCATGAAAG+TGG - chr4_4:44857692-44857711 Msa0682810:intron 40.0%
! TGCACTATAAGCCACTTTCA+TGG + chr4_4:44857706-44857725 None:intergenic 40.0%
TGACACAATGACGTAGATTC+TGG + chr4_4:44857764-44857783 None:intergenic 40.0%
AGGCGTCCTTAAAAACATGT+TGG - chr4_4:44857894-44857913 Msa0682810:CDS 40.0%
GATAAGTCGTCTACACAATG+TGG + chr4_4:44857966-44857985 None:intergenic 40.0%
!! GTTATGGTTGTGGTGTTACT+TGG - chr4_4:44858034-44858053 Msa0682810:intron 40.0%
GGTTGAAAGTCAGAAAGAGT+AGG - chr4_4:44858129-44858148 Msa0682810:CDS 40.0%
CAAGAAGACCAAAGGCAAAG+TGG - chr4_4:44851546-44851565 Msa0682810:three_prime_UTR 45.0%
! GCTTTTCACCACTTTGCCTT+TGG + chr4_4:44851557-44851576 None:intergenic 45.0%
!! TCCTGTTCCTTTTCTAGCCT+TGG - chr4_4:44851658-44851677 Msa0682810:intron 45.0%
ACCAAGGCTAGAAAAGGAAC+AGG + chr4_4:44851662-44851681 None:intergenic 45.0%
GTGAAGACCAAGGCTAGAAA+AGG + chr4_4:44851668-44851687 None:intergenic 45.0%
ACCTTATGTGACCAACTTCG+TGG - chr4_4:44851691-44851710 Msa0682810:intron 45.0%
! ACCACGAAGTTGGTCACATA+AGG + chr4_4:44851695-44851714 None:intergenic 45.0%
GCTTGAGCTTGAATCAACGT+TGG + chr4_4:44851851-44851870 None:intergenic 45.0%
GCTATTCCTGTTGTTCTCTC+TGG - chr4_4:44851869-44851888 Msa0682810:three_prime_UTR 45.0%
AGGGAAGACTATTGCATACC+TGG - chr4_4:44852184-44852203 Msa0682810:CDS 45.0%
AGTGATGAATTATCGGAGCC+AGG + chr4_4:44852205-44852224 None:intergenic 45.0%
AAGAGAATTCAGCGCTCTGA+TGG - chr4_4:44852239-44852258 Msa0682810:CDS 45.0%
TGCAAACATAACTCACGCGT+TGG + chr4_4:44852699-44852718 None:intergenic 45.0%
AACGCGTGAGTTATGTTTGC+AGG - chr4_4:44852698-44852717 Msa0682810:intron 45.0%
!! AGTTACTGCACCGGTTTCAT+TGG - chr4_4:44852739-44852758 Msa0682810:intron 45.0%
CGGTTTCATTGGATTGTTCC+AGG - chr4_4:44852750-44852769 Msa0682810:intron 45.0%
GTTCCAGGATACATTATGGG+TGG - chr4_4:44852765-44852784 Msa0682810:intron 45.0%
TCACCACCCATAATGTATCC+TGG + chr4_4:44852771-44852790 None:intergenic 45.0%
GGGTGGTGAAAGTAGATCAA+AGG - chr4_4:44852782-44852801 Msa0682810:intron 45.0%
GTAGATCAAAGGAGAAAGCC+AGG - chr4_4:44852793-44852812 Msa0682810:intron 45.0%
CCAGGAATGTTGTCGAAAAC+GGG - chr4_4:44852912-44852931 Msa0682810:intron 45.0%
GAGTTTACAGTTCCAGAAGC+AGG + chr4_4:44853181-44853200 None:intergenic 45.0%
TCAAAGACTGGAACTGTGGA+AGG + chr4_4:44853267-44853286 None:intergenic 45.0%
AGCATCAAAGACTGGAACTG+TGG + chr4_4:44853271-44853290 None:intergenic 45.0%
GTACAATGGGAGGGATACAA+AGG + chr4_4:44853298-44853317 None:intergenic 45.0%
TATCCCTCCCATTGTACAAG+TGG - chr4_4:44853301-44853320 Msa0682810:CDS 45.0%
CAACCACTTGTACAATGGGA+GGG + chr4_4:44853307-44853326 None:intergenic 45.0%
GACAGCAACCACTTGTACAA+TGG + chr4_4:44853312-44853331 None:intergenic 45.0%
ATTCACCACAACCAAACACC+CGG + chr4_4:44853372-44853391 None:intergenic 45.0%
ATGCAGTTGTGTGAGCTGTT+TGG - chr4_4:44853405-44853424 Msa0682810:CDS 45.0%
CACACTGTGGAATCGTAACA+AGG + chr4_4:44853621-44853640 None:intergenic 45.0%
!! GTCGTTGTGCCATTTCCTTT+AGG + chr4_4:44853737-44853756 None:intergenic 45.0%
TCGTGTACACAAATTTGCGC+TGG - chr4_4:44853860-44853879 Msa0682810:intron 45.0%
TTCGATGAAGCTGATCGGTA+TGG - chr4_4:44853889-44853908 Msa0682810:intron 45.0%
ACTTTATAAGGTCCTACGGC+TGG + chr4_4:44854315-44854334 None:intergenic 45.0%
GGGCACTTTATAAGGTCCTA+CGG + chr4_4:44854319-44854338 None:intergenic 45.0%
TGAAAGGGAACCTTCACAGA+AGG - chr4_4:44854513-44854532 Msa0682810:intron 45.0%
GACTCTCGTTGACAATAACG+AGG + chr4_4:44854864-44854883 None:intergenic 45.0%
! TTTGCTGTCATGCTTCTGTC+TGG - chr4_4:44855107-44855126 Msa0682810:intron 45.0%
! CTTTTCAACATGTGACGCAG+TGG - chr4_4:44855278-44855297 Msa0682810:intron 45.0%
TCCTTTCCACAAACCGAAGA+AGG - chr4_4:44855339-44855358 Msa0682810:intron 45.0%
CCTTTCCACAAACCGAAGAA+GGG - chr4_4:44855340-44855359 Msa0682810:intron 45.0%
GCTACATGGTAACATGCAAC+AGG - chr4_4:44855398-44855417 Msa0682810:intron 45.0%
ACATGGTAACATGCAACAGG+AGG - chr4_4:44855401-44855420 Msa0682810:intron 45.0%
! TCTACTGATGTTTCTGCCAG+AGG - chr4_4:44855477-44855496 Msa0682810:CDS 45.0%
ACATATTCAGTGGCTTCTCC+GGG + chr4_4:44855546-44855565 None:intergenic 45.0%
CACATATTCAGTGGCTTCTC+CGG + chr4_4:44855547-44855566 None:intergenic 45.0%
AAGCCACTGAATATGTGCAC+AGG - chr4_4:44855550-44855569 Msa0682810:intron 45.0%
GTACCTGTGCACATATTCAG+TGG + chr4_4:44855556-44855575 None:intergenic 45.0%
GCAACCGATGAGGATAATGA+TGG + chr4_4:44855965-44855984 None:intergenic 45.0%
!!! CTGTTTTTTTGGGTAGTGGC+CGG - chr4_4:44855992-44856011 Msa0682810:intron 45.0%
!!! TGTTTTTTTGGGTAGTGGCC+GGG - chr4_4:44855993-44856012 Msa0682810:intron 45.0%
! ACACCATGTTTCTGCAAGTC+TGG + chr4_4:44856373-44856392 None:intergenic 45.0%
GTACCCTCTTCTCAAAGTGT+TGG - chr4_4:44856405-44856424 Msa0682810:intron 45.0%
! TTCTGGAGACACAAGATCCA+TGG + chr4_4:44856493-44856512 None:intergenic 45.0%
ATGGATCTTGTGTCTCCAGA+AGG - chr4_4:44856492-44856511 Msa0682810:intron 45.0%
TGTGTTTGGGAGTTCTTGAG+TGG - chr4_4:44856823-44856842 Msa0682810:intron 45.0%
TTTGGGAGTTCTTGAGTGGA+GGG - chr4_4:44856827-44856846 Msa0682810:intron 45.0%
AGTTCTTGAGTGGAGGGAAA+TGG - chr4_4:44856833-44856852 Msa0682810:intron 45.0%
GTTCTTGAGTGGAGGGAAAT+GGG - chr4_4:44856834-44856853 Msa0682810:intron 45.0%
AGGTTAGTGAAGAAAGGGAG+AGG - chr4_4:44856857-44856876 Msa0682810:intron 45.0%
GGTTAGTGAAGAAAGGGAGA+GGG - chr4_4:44856858-44856877 Msa0682810:intron 45.0%
CCACTAAAACTGGAGATGGA+AGG + chr4_4:44857000-44857019 None:intergenic 45.0%
!! CCTTCCATCTCCAGTTTTAG+TGG - chr4_4:44856997-44857016 Msa0682810:CDS 45.0%
CAAGCCACTAAAACTGGAGA+TGG + chr4_4:44857004-44857023 None:intergenic 45.0%
CCAAGAGCAAAATGCTCTCT+TGG + chr4_4:44857467-44857486 None:intergenic 45.0%
!!! CCAAGAGAGCATTTTGCTCT+TGG - chr4_4:44857464-44857483 Msa0682810:intron 45.0%
!! AATAATTAATGATAATATTA+AGG - chr4_4:44851978-44851997 Msa0682810:three_prime_UTR 5.0%
!!! TGATTATATATTAAATTTTT+AGG - chr4_4:44853585-44853604 Msa0682810:intron 5.0%
!! ATATAATCTTAAAAAAAAAT+TGG - chr4_4:44855678-44855697 Msa0682810:CDS 5.0%
TGACGACCAGAGAGAACAAC+AGG + chr4_4:44851878-44851897 None:intergenic 50.0%
TTAATGCTGCTACGGGCACA+GGG - chr4_4:44852165-44852184 Msa0682810:CDS 50.0%
CAGCGCTCTGATGGAACATT+TGG - chr4_4:44852248-44852267 Msa0682810:CDS 50.0%
ATTTCTACCTTTGCGCAGCC+TGG + chr4_4:44852814-44852833 None:intergenic 50.0%
! CCCGTTTTCGACAACATTCC+TGG + chr4_4:44852915-44852934 None:intergenic 50.0%
! CTAGCACGGTATTGGGATTG+CGG + chr4_4:44853033-44853052 None:intergenic 50.0%
GAAGGATTTGCAAGTCGAGG+AGG + chr4_4:44853249-44853268 None:intergenic 50.0%
GTGGAAGGATTTGCAAGTCG+AGG + chr4_4:44853252-44853271 None:intergenic 50.0%
GCAACCACTTGTACAATGGG+AGG + chr4_4:44853308-44853327 None:intergenic 50.0%
! ACGCTGATTGCGTCAGTTTC+CGG - chr4_4:44853350-44853369 Msa0682810:CDS 50.0%
AGTTTCCGGGTGTTTGGTTG+TGG - chr4_4:44853364-44853383 Msa0682810:CDS 50.0%
!! AAGTGATCTAAAAGGCGCCC+AGG + chr4_4:44853823-44853842 None:intergenic 50.0%
GGGCACGATGATCAAGAGAA+TGG - chr4_4:44854084-44854103 Msa0682810:intron 50.0%
! TCCAGTAAAGTACCAGCCGT+AGG - chr4_4:44854300-44854319 Msa0682810:CDS 50.0%
TCCTACGGCTGGTACTTTAC+TGG + chr4_4:44854304-44854323 None:intergenic 50.0%
ATGCAGTGCCTTGTGGATCA+CGG - chr4_4:44854455-44854474 Msa0682810:intron 50.0%
ATAGCAAGCCGTGATCCACA+AGG + chr4_4:44854466-44854485 None:intergenic 50.0%
CAAAGCCTTGCCTTCTGTGA+AGG + chr4_4:44854526-44854545 None:intergenic 50.0%
! CCCTTCTTCGGTTTGTGGAA+AGG + chr4_4:44855343-44855362 None:intergenic 50.0%
! CTGTTCCCTTCTTCGGTTTG+TGG + chr4_4:44855348-44855367 None:intergenic 50.0%
GTAACATGCAACAGGAGGAC+AGG - chr4_4:44855406-44855425 Msa0682810:intron 50.0%
! GGACAGGACAACCAGTTTTC+AGG - chr4_4:44855422-44855441 Msa0682810:CDS 50.0%
CAGCATAAAGGCAACCGATG+AGG + chr4_4:44855975-44855994 None:intergenic 50.0%
!!! GTTTTTTTGGGTAGTGGCCG+GGG - chr4_4:44855994-44856013 Msa0682810:intron 50.0%
GTCCATACCAACTGAGCACT+CGG - chr4_4:44856051-44856070 Msa0682810:intron 50.0%
GTTGGAAGAACTGCTCGACT+TGG - chr4_4:44856295-44856314 Msa0682810:intron 50.0%
!! ACTGCTCGACTTGGTGAAAG+AGG - chr4_4:44856304-44856323 Msa0682810:intron 50.0%
GCAGAAACATGGTGTCTCAC+TGG - chr4_4:44856378-44856397 Msa0682810:intron 50.0%
GTTTGGGAGTTCTTGAGTGG+AGG - chr4_4:44856826-44856845 Msa0682810:intron 50.0%
GTTAATGCTGCTACGGGCAC+AGG - chr4_4:44852164-44852183 Msa0682810:CDS 55.0%
! CGCTGATTGCGTCAGTTTCC+GGG - chr4_4:44853351-44853370 Msa0682810:CDS 55.0%
TGCGTCAGTTTCCGGGTGTT+TGG - chr4_4:44853358-44853377 Msa0682810:CDS 55.0%
GGGAACCTTCACAGAAGGCA+AGG - chr4_4:44854518-44854537 Msa0682810:intron 55.0%
! GTCCGAGTGCTCAGTTGGTA+TGG + chr4_4:44856056-44856075 None:intergenic 55.0%
TGCAGGACTCAAGTGCCTTC+TGG + chr4_4:44856510-44856529 None:intergenic 55.0%
TGAGTCCTGCATCTCGTCCA+AGG - chr4_4:44856519-44856538 Msa0682810:intron 55.0%
GATCACCTTGGACGAGATGC+AGG + chr4_4:44856527-44856546 None:intergenic 55.0%
CTTGAGTGGAGGGAAATGGG+AGG - chr4_4:44856837-44856856 Msa0682810:intron 55.0%
CACGATGCGCTGTGTATGCA+CGG + chr4_4:44857492-44857511 None:intergenic 55.0%
GTGCATACACAGCGCATCGT+GGG - chr4_4:44857491-44857510 Msa0682810:intron 55.0%
TGCATACACAGCGCATCGTG+GGG - chr4_4:44857492-44857511 Msa0682810:intron 55.0%
GAGAAAGCCAGGCTGCGCAA+AGG - chr4_4:44852804-44852823 Msa0682810:intron 60.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr4_4:44856014-44856033 None:intergenic 60.0%
! AAGGCGTCCGAGTGCTCAGT+TGG + chr4_4:44856061-44856080 None:intergenic 60.0%
CGTGCATACACAGCGCATCG+TGG - chr4_4:44857490-44857509 Msa0682810:intron 60.0%
AGTGGCCGGGGTTTGAACCC+CGG - chr4_4:44856006-44856025 Msa0682810:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 44851512 44858266 44851512 ID=Msa0682810;Name=Msa0682810
chr4_4 mRNA 44851512 44858266 44851512 ID=Msa0682810-mRNA-1;Parent=Msa0682810;Name=Msa0682810-mRNA-1;_AED=0.10;_eAED=0.10;_QI=20|0.8|0.72|1|0.6|0.54|11|547|541
chr4_4 exon 44851512 44851676 44851512 ID=Msa0682810-mRNA-1:exon:10845;Parent=Msa0682810-mRNA-1
chr4_4 exon 44851700 44852333 44851700 ID=Msa0682810-mRNA-1:exon:10844;Parent=Msa0682810-mRNA-1
chr4_4 exon 44853238 44853484 44853238 ID=Msa0682810-mRNA-1:exon:10843;Parent=Msa0682810-mRNA-1
chr4_4 exon 44854207 44854420 44854207 ID=Msa0682810-mRNA-1:exon:10842;Parent=Msa0682810-mRNA-1
chr4_4 exon 44855412 44855507 44855412 ID=Msa0682810-mRNA-1:exon:10841;Parent=Msa0682810-mRNA-1
chr4_4 exon 44855562 44855761 44855562 ID=Msa0682810-mRNA-1:exon:10840;Parent=Msa0682810-mRNA-1
chr4_4 exon 44855873 44855981 44855873 ID=Msa0682810-mRNA-1:exon:10839;Parent=Msa0682810-mRNA-1
chr4_4 exon 44856953 44857096 44856953 ID=Msa0682810-mRNA-1:exon:10838;Parent=Msa0682810-mRNA-1
chr4_4 exon 44857509 44857618 44857509 ID=Msa0682810-mRNA-1:exon:10837;Parent=Msa0682810-mRNA-1
chr4_4 exon 44857878 44857950 44857878 ID=Msa0682810-mRNA-1:exon:10836;Parent=Msa0682810-mRNA-1
chr4_4 exon 44858066 44858266 44858066 ID=Msa0682810-mRNA-1:exon:10835;Parent=Msa0682810-mRNA-1
chr4_4 five_prime_UTR 44858247 44858266 44858247 ID=Msa0682810-mRNA-1:five_prime_utr;Parent=Msa0682810-mRNA-1
chr4_4 CDS 44858066 44858246 44858066 ID=Msa0682810-mRNA-1:cds;Parent=Msa0682810-mRNA-1
chr4_4 CDS 44857878 44857950 44857878 ID=Msa0682810-mRNA-1:cds;Parent=Msa0682810-mRNA-1
chr4_4 CDS 44857509 44857618 44857509 ID=Msa0682810-mRNA-1:cds;Parent=Msa0682810-mRNA-1
chr4_4 CDS 44856953 44857096 44856953 ID=Msa0682810-mRNA-1:cds;Parent=Msa0682810-mRNA-1
chr4_4 CDS 44855873 44855981 44855873 ID=Msa0682810-mRNA-1:cds;Parent=Msa0682810-mRNA-1
chr4_4 CDS 44855562 44855761 44855562 ID=Msa0682810-mRNA-1:cds;Parent=Msa0682810-mRNA-1
chr4_4 CDS 44855412 44855507 44855412 ID=Msa0682810-mRNA-1:cds;Parent=Msa0682810-mRNA-1
chr4_4 CDS 44854207 44854420 44854207 ID=Msa0682810-mRNA-1:cds;Parent=Msa0682810-mRNA-1
chr4_4 CDS 44853238 44853484 44853238 ID=Msa0682810-mRNA-1:cds;Parent=Msa0682810-mRNA-1
chr4_4 CDS 44852082 44852333 44852082 ID=Msa0682810-mRNA-1:cds;Parent=Msa0682810-mRNA-1
chr4_4 three_prime_UTR 44851700 44852081 44851700 ID=Msa0682810-mRNA-1:three_prime_utr;Parent=Msa0682810-mRNA-1
chr4_4 three_prime_UTR 44851512 44851676 44851512 ID=Msa0682810-mRNA-1:three_prime_utr;Parent=Msa0682810-mRNA-1
Gene Sequence

>Msa0682810

ATGGCGACGATGAACAAGAAGACCAAAGGCAAAGTGGTGAAAAGCAATGAAAAAGAGATGAAGAAGAAAACTACTATTCACGATAATGGAACCAACAAAGGAGACAATAACAACAACGTTTTTGCTTCCTGTTCCTTTTCTAGCCTTGGTCTTCACCAAACCTTATGTGACCAACTTCGTGAAAGAATGGGTTTTGAAGCTCCAACGTTGATTCAAGCTCAAGCTATTCCTGTTGTTCTCTCTGGTCGTCATGCATTGGTTAATGCTGCTACGGGCACAGGGAAGACTATTGCATACCTGGCTCCGATAATTCATCACTTGCAGAGTTATGATAAGAGAATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAGTTATGTTTGCAGGTTCATGAAATTCTTCAGAAGTTACTGCACCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAAAGTAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATTGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAACACATCATCATTCGTGTACACAAATTTGCGCTGGATAATTTTCGATGAAGCTGATCGTATTTTGGAATTAGGATTTGGAAAAGAGATACAAGAAATACTAAATCTTTTAGGTTCAATGAAGACAGGGCACGATGATCAAGAGAATGGAGTTTCAAGACCCTCTAAATTTCAAAGACAAAACCTGCTTTTATCAGCGACCTTAAATGAGAAAGTAAACAACCTTGCTAAAATTAGCTTAGAGGATCCAGTTATGATTGATTGCGATGAAGACAATGAAGAGACACATTCCAGTAAAGTACCAGCCGTAGGACCTTATAAAGTGCCCGAACAGTTAATTCAGAGATACATAAAGGAAGGGAACAGAACAATGTTTCTTGGATGCAAAACTCTTAGGCTACATGGTAACATGCAACAGGAGGACAGGACAACCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCACTTCTTTTGTCTACTGATGTTTCTGCCAGAGGCTTAGATTTTCCAAATGTTAGATGCATCATACAATATGATTCTCCCGGAGAAGCCACTGAATATGTGCACAGAGTTGGAAGAACTGCTCGACTTGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAACCATCTGAAATAGACTATTTACCAGACTTGCAGAAACATGGTGTCTCACTGGCAGAGTACCCTCTTCTCAAAGTGTTGGATAGTTTCCCAATGTCAGCACAAAAGAACAACATAAAGAAATCTGTTTTCATAGACATGCATCCATGGATCTTGTGTCTCCAGAAGGCACTTGAGTCCTGCATCTCGTCCAAGCCCAAAATGGAAGAACTTGCCAAGAGAGCATTTTGCTCTTGGGTCCGTGCATACACAGCGCATCGTGGGGAGCTGAAAAGAATATTTATGGTTAAGAAACTTCACTTAGGGCACGTAGCAAAAAGCTTTGCATTGAAACAAACACCCTCCTTAGTTGGAAAGTCTTTCCAAAACCAAACTAAGAAGAGAAAGAGATTTGAGAAGAAAAATGGGCCATCGAATAAGAGAAAAGTTGCACGGCGTGTGACATAA
Protein sequence

>Msa0682810

MATMNKKTKGKVVKSNEKEMKKKTTIHDNGTNKGDNNNNVFASCSFSSLGLHQTLCDQLRERMGFEAPTLIQAQAIPVVLSGRHALVNAATGTGKTIAYLAPIIHHLQSYDKRIQRSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTSSFVYTNLRWIIFDEADRILELGFGKEIQEILNLLGSMKTGHDDQENGVSRPSKFQRQNLLLSATLNEKVNNLAKISLEDPVMIDCDEDNEETHSSKVPAVGPYKVPEQLIQRYIKEGNRTMFLGCKTLRLHGNMQQEDRTTSFQAFKTEKSALLLSTDVSARGLDFPNVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPSEIDYLPDLQKHGVSLAEYPLLKVLDSFPMSAQKNNIKKSVFIDMHPWILCLQKALESCISSKPKMEELAKRAFCSWVRAYTAHRGELKRIFMVKKLHLGHVAKSFALKQTPSLVGKSFQNQTKKRKRFEKKNGPSNKRKVARRVT*