AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0643060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643060 MtrunA17_Chr4g0029191 83.713 614 26 5 1 541 1 613 0.0 1000
Msa0643060 MtrunA17_Chr2g0301281 80.719 612 34 7 7 541 6 610 0.0 967
Msa0643060 MtrunA17_Chr2g0307471 36.293 518 256 12 38 529 84 553 3.36e-90 287
Msa0643060 MtrunA17_Chr4g0062301 36.832 505 240 14 63 534 114 572 1.08e-87 281
Msa0643060 MtrunA17_Chr2g0300291 33.634 443 204 12 28 418 117 521 9.45e-61 213
Msa0643060 MtrunA17_Chr3g0098121 33.486 436 205 12 32 418 132 531 1.20e-58 207
Msa0643060 MtrunA17_Chr4g0034411 30.544 478 259 11 57 509 89 518 1.02e-56 202
Msa0643060 MtrunA17_Chr5g0443991 31.365 491 259 13 65 528 95 534 1.06e-56 202
Msa0643060 MtrunA17_Chr3g0114081 29.492 512 273 13 38 507 7 472 2.03e-56 199
Msa0643060 MtrunA17_Chr6g0483491 32.500 400 209 9 45 415 10 377 2.83e-56 194
Msa0643060 MtrunA17_Chr7g0236841 32.250 400 210 9 45 415 10 377 1.40e-55 193
Msa0643060 MtrunA17_Chr2g0330401 34.667 375 193 12 45 393 96 444 1.40e-54 192
Msa0643060 MtrunA17_Chr3g0107851 30.789 393 218 9 45 406 117 486 1.23e-52 187
Msa0643060 MtrunA17_Chr8g0347161 31.941 407 221 11 41 415 103 485 6.65e-52 186
Msa0643060 MtrunA17_Chr2g0277821 32.041 387 215 10 45 406 504 867 1.53e-50 187
Msa0643060 MtrunA17_Chr1g0200181 31.461 356 199 8 64 393 163 499 3.06e-50 182
Msa0643060 MtrunA17_Chr1g0157691 31.461 356 199 8 64 393 165 501 4.22e-50 181
Msa0643060 MtrunA17_Chr8g0347171 30.719 459 250 12 1 415 109 543 1.94e-49 180
Msa0643060 MtrunA17_Chr8g0347151 30.751 413 230 10 37 417 198 586 2.25e-49 181
Msa0643060 MtrunA17_Chr4g0040761 30.890 382 218 7 46 405 20 377 5.21e-49 181
Msa0643060 MtrunA17_Chr7g0270131 32.143 364 203 10 45 386 232 573 7.74e-49 180
Msa0643060 MtrunA17_Chr4g0076491 30.729 384 209 9 61 406 302 666 1.52e-47 176
Msa0643060 MtrunA17_Chr6g0449741 30.645 372 223 10 61 406 264 626 3.06e-47 174
Msa0643060 MtrunA17_Chr8g0386451 29.060 468 262 14 19 444 262 701 1.52e-46 174
Msa0643060 MtrunA17_Chr7g0271121 31.443 388 209 9 39 397 100 459 5.28e-45 169
Msa0643060 MtrunA17_Chr2g0293631 31.472 394 217 11 31 400 484 848 2.43e-44 168
Msa0643060 MtrunA17_Chr1g0193491 30.789 393 219 10 35 397 99 468 7.93e-44 164
Msa0643060 MtrunA17_Chr6g0461751 29.268 410 235 11 20 404 122 501 8.73e-44 163
Msa0643060 MtrunA17_Chr3g0121351 29.219 397 200 10 45 393 145 508 9.34e-44 164
Msa0643060 MtrunA17_Chr1g0176041 30.311 386 219 11 45 398 154 521 1.50e-43 163
Msa0643060 MtrunA17_Chr6g0449911 29.455 404 236 12 44 422 164 543 1.78e-42 161
Msa0643060 MtrunA17_Chr6g0466611 29.708 377 213 12 45 388 142 499 2.21e-42 161
Msa0643060 MtrunA17_Chr2g0310581 28.118 441 263 10 27 439 35 449 5.35e-42 157
Msa0643060 MtrunA17_Chr3g0095031 29.306 389 221 12 27 391 77 435 1.21e-41 157
Msa0643060 MtrunA17_Chr5g0442191 27.820 399 238 8 46 419 82 455 2.38e-41 157
Msa0643060 MtrunA17_Chr4g0062321 36.032 247 116 5 136 358 5 233 3.88e-41 148
Msa0643060 MtrunA17_Chr5g0409981 29.921 381 235 9 30 393 91 456 1.97e-40 153
Msa0643060 MtrunA17_Chr4g0063551 29.688 384 215 11 46 393 141 505 9.12e-40 153
Msa0643060 MtrunA17_Chr7g0236831 28.935 432 235 11 45 406 163 592 4.95e-38 149
Msa0643060 MtrunA17_Chr1g0204391 28.822 399 223 11 38 395 37 415 9.56e-38 146
Msa0643060 MtrunA17_Chr4g0058591 32.817 323 168 10 56 353 212 510 4.05e-37 144
Msa0643060 MtrunA17_Chr2g0299681 27.481 393 236 9 45 415 41 406 3.37e-35 136
Msa0643060 MtrunA17_Chr2g0297261 25.659 417 261 9 22 416 11 400 3.67e-35 136
Msa0643060 MtrunA17_Chr8g0342861 26.807 429 263 10 9 415 7 406 2.41e-34 134
Msa0643060 MtrunA17_Chr7g0263771 28.022 364 207 11 63 401 150 483 3.75e-34 136
Msa0643060 MtrunA17_Chr6g0475251 29.412 357 206 9 65 395 122 458 6.18e-34 136
Msa0643060 MtrunA17_Chr4g0003441 28.492 358 198 12 64 393 126 453 8.47e-34 134
Msa0643060 MtrunA17_Chr2g0329931 27.735 393 235 9 45 415 41 406 9.12e-34 132
Msa0643060 MtrunA17_Chr4g0070981 26.972 393 238 10 45 415 41 406 4.49e-33 130
Msa0643060 MtrunA17_Chr7g0247191 28.324 346 197 8 64 387 168 484 1.39e-32 131
Msa0643060 MtrunA17_Chr7g0247221 27.746 346 199 8 64 387 161 477 6.59e-32 129
Msa0643060 MtrunA17_Chr7g0247181 27.746 346 199 8 64 387 158 474 7.37e-32 129
Msa0643060 MtrunA17_Chr3g0145781 28.049 410 214 16 37 393 124 505 1.54e-29 122
Msa0643060 MtrunA17_Chr8g0354761 25.610 492 295 16 34 503 2 444 2.32e-29 120
Msa0643060 MtrunA17_Chr1g0192021 25.104 482 244 15 20 417 1 449 3.47e-29 121
Msa0643060 MtrunA17_Chr4g0004301 27.487 382 205 14 83 398 70 445 4.48e-28 117
Msa0643060 MtrunA17_Chr1g0149251 25.843 356 214 11 85 415 3 333 5.55e-28 114
Msa0643060 MtrunA17_Chr5g0434301 27.225 382 206 13 83 398 70 445 1.05e-27 116
Msa0643060 MtrunA17_Chr5g0429221 25.693 397 240 12 45 415 3 370 3.21e-27 114
Msa0643060 MtrunA17_Chr1g0179761 29.397 398 198 17 42 387 77 443 1.32e-25 110
Msa0643060 MtrunA17_Chr2g0309551 28.862 246 157 6 38 272 102 340 1.48e-25 110
Msa0643060 MtrunA17_Chr2g0309551 34.737 95 62 0 313 407 430 524 9.06e-13 70.9
Msa0643060 MtrunA17_Chr4g0074521 29.863 365 204 13 57 382 90 441 1.10e-24 107
Msa0643060 MtrunA17_Chr8g0349951 36.538 156 92 3 45 200 10 158 1.81e-23 97.1
Msa0643060 MtrunA17_Chr4g0039471 32.319 263 118 12 24 274 204 418 1.29e-22 100
Msa0643060 MtrunA17_Chr1g0155201 25.714 245 151 5 173 407 14 237 7.20e-18 85.1
Msa0643060 MtrunA17_Chr8g0364251 32.642 193 109 7 45 223 91 276 1.15e-17 86.3
Msa0643060 MtrunA17_Chr8g0364251 40.260 77 45 1 311 387 457 532 2.07e-11 66.6
Msa0643060 MtrunA17_Chr3g0137901 38.636 88 53 1 319 405 71 158 7.00e-16 75.9
Msa0643060 MtrunA17_Chr0c30g0494091 31.383 188 109 5 57 233 90 268 7.08e-14 73.6
Msa0643060 MtrunA17_Chr4g0025131 29.586 169 109 5 42 208 53 213 4.65e-13 69.7
Msa0643060 MtrunA17_Chr4g0062331 35.294 136 60 5 361 494 5 114 9.06e-13 67.0
Msa0643060 MtrunA17_Chr0c09g0493491 25.243 206 136 8 38 239 85 276 1.84e-11 65.1
Msa0643060 MtrunA17_Chr6g0465771 25.243 206 136 8 38 239 85 276 9.52e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0643060 AT2G40700.1 59.469 565 150 6 38 525 24 586 0.0 662
Msa0643060 AT5G65900.1 33.973 521 267 13 39 535 149 616 6.82e-85 276
Msa0643060 AT3G18600.1 34.429 517 267 13 40 531 85 554 1.94e-81 265
Msa0643060 AT4G16630.1 34.103 390 191 7 41 397 164 520 6.25e-59 209
Msa0643060 AT1G71370.1 29.522 481 258 12 61 509 32 463 2.56e-56 198
Msa0643060 AT5G54910.1 32.231 484 250 14 69 525 95 527 2.65e-56 201
Msa0643060 AT5G05450.1 28.906 512 281 13 36 509 6 472 3.99e-56 198
Msa0643060 AT5G60990.1 31.658 398 225 9 45 415 10 387 5.56e-55 192
Msa0643060 AT5G63120.2 33.053 357 190 9 62 393 182 514 3.28e-53 190
Msa0643060 AT1G20920.2 31.643 414 231 13 50 435 197 586 3.24e-52 191
Msa0643060 AT1G20920.4 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0643060 AT1G20920.6 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0643060 AT1G20920.3 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0643060 AT1G20920.7 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0643060 AT1G20920.5 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0643060 AT1G20920.1 31.643 414 231 13 50 435 535 924 1.73e-51 190
Msa0643060 AT1G55150.1 32.086 374 204 11 45 393 100 448 1.09e-50 181
Msa0643060 AT1G55150.2 32.086 374 204 11 45 393 125 473 2.32e-50 181
Msa0643060 AT3G09620.2 32.461 382 200 13 50 416 403 741 4.21e-49 182
Msa0643060 AT3G09620.1 32.461 382 200 13 50 416 402 740 4.66e-49 182
Msa0643060 AT2G47330.1 32.609 368 199 10 41 386 230 570 2.13e-48 179
Msa0643060 AT5G08620.1 28.976 459 262 13 3 415 24 464 5.15e-48 176
Msa0643060 AT5G51280.1 30.239 377 213 10 45 393 147 501 2.56e-47 174
Msa0643060 AT1G77030.1 30.971 381 217 10 46 404 30 386 3.19e-47 177
Msa0643060 AT3G01540.4 31.620 389 211 12 45 406 159 519 1.13e-46 172
Msa0643060 AT3G01540.2 31.620 389 211 12 45 406 159 519 1.13e-46 172
Msa0643060 AT3G01540.3 31.620 389 211 12 45 406 159 519 1.13e-46 172
Msa0643060 AT3G01540.1 31.620 389 211 12 45 406 159 519 1.43e-46 172
Msa0643060 AT4G33370.1 31.830 377 207 11 45 393 98 452 2.63e-46 170
Msa0643060 AT5G26742.1 31.646 395 218 11 27 392 82 453 4.20e-45 170
Msa0643060 AT5G26742.2 31.646 395 218 11 27 392 82 453 4.23e-45 170
Msa0643060 AT1G31970.1 31.070 383 233 9 31 395 103 472 8.22e-45 166
Msa0643060 AT5G14610.6 30.769 390 213 13 45 406 162 522 8.97e-45 167
Msa0643060 AT5G14610.2 30.769 390 213 13 45 406 162 522 1.00e-44 167
Msa0643060 AT2G33730.1 30.458 371 227 9 61 406 329 693 1.14e-44 168
Msa0643060 AT5G08610.1 29.688 384 220 10 64 415 401 766 1.20e-44 169
Msa0643060 AT5G14610.5 30.769 390 213 13 45 406 170 530 1.43e-44 167
Msa0643060 AT3G06480.1 31.458 391 209 12 45 406 436 796 1.85e-44 169
Msa0643060 AT3G02065.3 30.691 391 212 12 45 404 111 473 3.91e-44 164
Msa0643060 AT3G02065.2 30.691 391 212 12 45 404 111 473 3.91e-44 164
Msa0643060 AT5G14610.7 30.352 369 205 11 64 406 49 391 4.98e-44 163
Msa0643060 AT5G14610.3 30.352 369 205 11 64 406 49 391 4.98e-44 163
Msa0643060 AT1G63250.1 30.405 444 239 14 69 470 352 767 6.35e-44 167
Msa0643060 AT2G42520.2 30.287 383 213 11 45 393 160 522 2.33e-43 164
Msa0643060 AT2G42520.1 30.287 383 213 11 45 393 160 522 2.33e-43 164
Msa0643060 AT2G42520.3 30.287 383 213 11 45 393 160 522 2.33e-43 164
Msa0643060 AT2G07750.1 28.455 492 287 15 18 470 349 814 2.99e-43 165
Msa0643060 AT5G14610.1 30.352 369 205 11 64 406 248 590 5.06e-43 163
Msa0643060 AT3G22310.2 28.919 370 218 8 45 392 117 463 9.78e-43 161
Msa0643060 AT3G22310.1 28.919 370 218 8 45 392 117 463 1.16e-42 161
Msa0643060 AT3G22330.1 27.628 409 250 8 34 419 94 479 1.37e-42 161
Msa0643060 AT3G58510.1 29.474 380 218 10 45 393 152 512 1.52e-42 161
Msa0643060 AT3G58510.3 29.474 380 218 10 45 393 152 512 1.52e-42 161
Msa0643060 AT3G58510.2 29.474 380 218 10 45 393 152 512 1.52e-42 161
Msa0643060 AT5G63630.1 29.974 387 215 11 64 415 73 438 1.69e-42 159
Msa0643060 AT5G26742.3 31.609 348 189 10 71 392 36 360 4.41e-42 160
Msa0643060 AT5G63630.2 29.974 387 215 11 64 415 267 632 1.80e-41 159
Msa0643060 AT3G58570.1 29.058 382 219 10 45 393 147 509 7.05e-41 157
Msa0643060 AT1G16280.1 28.467 411 242 8 13 398 28 411 7.30e-41 154
Msa0643060 AT3G02065.1 29.834 362 196 11 74 404 2 336 7.47e-40 149
Msa0643060 AT1G28180.1 29.178 353 209 6 75 406 3 335 2.94e-39 147
Msa0643060 AT3G09720.2 28.372 430 244 15 8 404 97 495 5.72e-39 150
Msa0643060 AT3G09720.1 28.372 430 244 15 8 404 97 495 5.72e-39 150
Msa0643060 AT5G63120.3 32.492 317 165 9 62 353 182 474 9.06e-39 148
Msa0643060 AT5G63120.4 32.492 317 165 9 62 353 182 474 9.06e-39 148
Msa0643060 AT5G63120.5 32.492 317 165 9 62 353 182 474 9.06e-39 148
Msa0643060 AT5G63120.1 32.198 323 170 9 62 359 182 480 9.15e-39 148
Msa0643060 AT1G12770.2 27.166 427 245 11 40 407 106 525 1.00e-38 149
Msa0643060 AT1G12770.1 27.166 427 245 11 40 407 106 525 1.00e-38 149
Msa0643060 AT4G09730.1 28.877 374 220 12 45 388 113 470 8.29e-38 147
Msa0643060 AT1G71280.2 29.204 339 175 8 61 377 33 328 2.02e-37 141
Msa0643060 AT3G19760.1 27.595 395 235 10 45 416 36 402 2.01e-36 140
Msa0643060 AT1G71280.1 29.375 320 163 6 61 358 33 311 7.25e-36 140
Msa0643060 AT3G13920.4 28.499 393 227 10 45 415 40 400 9.05e-35 135
Msa0643060 AT5G62190.1 31.092 357 199 10 59 387 107 444 9.61e-35 139
Msa0643060 AT3G13920.3 27.990 393 234 9 45 415 30 395 1.26e-34 135
Msa0643060 AT3G13920.1 27.990 393 234 9 45 415 40 405 1.85e-34 135
Msa0643060 AT3G16840.2 29.078 423 227 12 45 397 192 611 2.57e-34 138
Msa0643060 AT3G16840.1 29.078 423 227 12 45 397 191 610 2.89e-34 138
Msa0643060 AT4G00660.1 25.917 409 251 9 1 387 88 466 3.45e-34 135
Msa0643060 AT4G00660.2 25.917 409 251 9 1 387 88 466 3.45e-34 135
Msa0643060 AT5G14610.4 30.286 350 185 14 45 366 170 488 9.55e-34 134
Msa0643060 AT2G45810.1 28.324 346 197 8 64 387 173 489 1.13e-33 134
Msa0643060 AT1G54270.2 27.451 408 237 11 35 415 25 400 1.30e-33 132
Msa0643060 AT3G61240.2 27.747 364 211 9 46 387 126 459 1.35e-33 134
Msa0643060 AT3G61240.1 27.747 364 211 9 46 387 126 459 1.35e-33 134
Msa0643060 AT1G51380.1 25.854 410 248 10 35 415 6 388 1.62e-33 132
Msa0643060 AT1G54270.1 26.961 408 244 10 35 415 25 405 2.58e-33 131
Msa0643060 AT3G13920.5 27.838 370 219 8 45 393 44 386 1.80e-32 129
Msa0643060 AT3G13920.2 27.838 370 219 8 45 393 40 382 1.81e-32 129
Msa0643060 AT1G72730.1 27.005 374 225 8 64 415 60 407 2.30e-32 129
Msa0643060 AT5G11170.1 27.487 382 217 15 64 415 65 416 4.87e-32 128
Msa0643060 AT5G11200.1 27.487 382 217 15 64 415 65 416 4.87e-32 128
Msa0643060 AT3G06480.2 29.363 361 194 13 31 362 424 752 1.62e-31 130
Msa0643060 AT4G15850.1 26.650 394 192 10 83 398 73 447 2.59e-31 127
Msa0643060 AT4G34910.1 25.778 450 239 13 42 417 44 472 1.93e-29 123
Msa0643060 AT3G06980.1 29.383 405 206 17 41 393 371 747 4.28e-29 122
Msa0643060 AT5G11170.2 26.870 361 204 15 85 415 3 333 5.12e-27 112
Msa0643060 AT3G53110.1 27.273 385 213 14 42 387 89 445 9.65e-26 110
Msa0643060 AT5G19210.2 26.836 354 216 12 61 382 92 434 1.20e-22 101
Msa0643060 AT1G59990.1 31.500 200 119 7 37 223 71 265 4.36e-17 85.1
Msa0643060 AT1G59990.2 31.500 200 119 7 37 223 71 265 4.57e-17 84.7
Msa0643060 AT1G28180.2 39.316 117 68 2 75 189 3 118 2.93e-16 75.5
Msa0643060 AT1G51380.2 25.714 245 148 7 35 272 6 223 2.13e-15 77.0
Msa0643060 AT1G51380.4 25.256 293 179 9 35 315 6 270 9.58e-15 75.5
Msa0643060 AT1G51380.3 25.256 293 179 9 35 315 6 270 1.20e-14 75.5
Msa0643060 AT5G11200.2 35.294 102 64 2 316 415 374 475 1.50e-13 73.6
Msa0643060 AT5G11200.2 27.830 212 116 9 64 268 65 246 7.79e-12 68.2
Msa0643060 AT5G11200.3 35.294 102 64 2 316 415 356 457 1.78e-13 73.2
Msa0643060 AT5G11200.3 27.830 212 116 9 64 268 65 246 6.02e-12 68.6

Find 125 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGCAAGTTCTTCCATTT+TGG 0.059239 4_3:-45508103 None:intergenic
TTCTCTTCTTAGTTTGGTTT+TGG 0.175971 4_3:-45508269 None:intergenic
GGAGCTGAAAAGAATATTTA+TGG 0.227529 4_3:+45508170 Msa0643060:CDS
GATTGTTCCAGGATACATTA+TGG 0.248924 4_3:+45503123 Msa0643060:CDS
AACTGTTCGGGCACTTTATA+AGG 0.254541 4_3:-45504686 None:intergenic
ATCTCTTTCTCTTCTTAGTT+TGG 0.258176 4_3:-45508275 None:intergenic
GTTGTTTACTTTCTCATTTA+AGG 0.270100 4_3:-45504519 None:intergenic
CCTTGCTAAAATTAGCTTAG+AGG 0.298410 4_3:+45504541 Msa0643060:CDS
CTCTGCAAGTGATGAATTAT+CGG 0.323068 4_3:-45502571 None:intergenic
TGCAGGACTCAAGTGCCTTC+TGG 0.324167 4_3:-45507164 None:intergenic
TTTCAACCACTCATATTTGA+TGG 0.324737 4_3:-45508771 None:intergenic
CGGTTTCATTGGATTGTTCC+AGG 0.329885 4_3:+45503112 Msa0643060:CDS
AAAACTACTATTCACGATAA+TGG 0.332737 4_3:+45501960 Msa0643060:CDS
CACATATTCAGTGGCTTCTC+CGG 0.341245 4_3:-45505906 None:intergenic
TTCTTGGATGCAAAACTCTT+AGG 0.344976 4_3:+45505738 Msa0643060:CDS
GGGAACAGAACAATGTTTCT+TGG 0.348873 4_3:+45505722 Msa0643060:CDS
AACGCGTGAGTTATGTTTGC+AGG 0.350006 4_3:+45503060 Msa0643060:CDS
TTGTCATTGTCAGCCCAAAA+TGG 0.355307 4_3:+45508089 Msa0643060:intron
TGTATGATGCATCTAACATT+TGG 0.361040 4_3:-45505872 None:intergenic
GTTGTTATTGTCTCCTTTGT+TGG 0.365662 4_3:-45501985 None:intergenic
GTTAATTCAGAGATACATAA+AGG 0.373067 4_3:+45504706 Msa0643060:CDS
AGTTACTGCACCGGTTTCAT+TGG 0.377011 4_3:+45503101 Msa0643060:CDS
CAGCGCTCTGATGGAACATT+TGG 0.377668 4_3:+45502610 Msa0643060:CDS
TCAATTCTTATTGCAACTCC+TGG 0.381359 4_3:+45504164 Msa0643060:CDS
TGCACTATAAGCCACTTTCA+TGG 0.385616 4_3:-45508360 None:intergenic
ATTGTTCCAGGATACATTAT+GGG 0.387712 4_3:+45503124 Msa0643060:CDS
TACAACATGTCTGTTTCTTC+AGG 0.394894 4_3:+45508531 Msa0643060:three_prime_UTR
GCTATTCCTGTTGTTCTCTC+TGG 0.395213 4_3:+45502231 Msa0643060:CDS
TGACACAATGACGTAGATTC+TGG 0.395330 4_3:-45508418 None:intergenic
AACAGTTCTACAAACATGTT+AGG 0.397437 4_3:+45508811 Msa0643060:three_prime_UTR
TCATCAATACCAATCATAAC+TGG 0.397709 4_3:-45504566 None:intergenic
TTGTCTATCGATGAATTTGA+AGG 0.398485 4_3:-45508494 None:intergenic
AAACAAACACCCTCCTTAGT+TGG 0.403481 4_3:+45508237 Msa0643060:CDS
ACCACGAAGTTGGTCACATA+AGG 0.412400 4_3:-45502054 None:intergenic
GTTATGGTTGTGGTGTTACT+TGG 0.415372 4_3:+45508691 Msa0643060:three_prime_UTR
TGTTCTTCAAGTGATCTAAA+AGG 0.421661 4_3:-45504190 None:intergenic
GTATCTCTGAATTAACTGTT+CGG 0.422649 4_3:-45504699 None:intergenic
GTTAATGCTGCTACGGGCAC+AGG 0.424220 4_3:+45502526 Msa0643060:CDS
CCAAGAGCAAAATGCTCTCT+TGG 0.429515 4_3:-45508121 None:intergenic
ACACCATGTTTCTGCAAGTC+TGG 0.434747 4_3:-45507027 None:intergenic
AAGTAATAGCATAGCGCTAA+AGG 0.437995 4_3:+45508471 Msa0643060:three_prime_UTR
TATCTCTGAATTAACTGTTC+GGG 0.438811 4_3:-45504698 None:intergenic
ATTTCTACCTTTGCGCAGCC+TGG 0.440548 4_3:-45503173 None:intergenic
TTGGAAAGACTTTCCAACTA+AGG 0.443030 4_3:-45508250 None:intergenic
ATTGTAATTTCATTTAGTTA+TGG 0.453467 4_3:+45508675 Msa0643060:three_prime_UTR
TCCTACGGCTGGTACTTTAC+TGG 0.456142 4_3:-45504663 None:intergenic
ACCAAGGCTAGAAAAGGAAC+AGG 0.462722 4_3:-45502021 None:intergenic
TTAGAGGATCCAGTTATGAT+TGG 0.467517 4_3:+45504557 Msa0643060:CDS
ATGGTTAAGAAACTTCACTT+AGG 0.467632 4_3:+45508189 Msa0643060:CDS
TAGATTGGTTAATGCTGCTA+CGG 0.474706 4_3:+45502519 Msa0643060:intron
GTTGAAAGTCAGAAAGAGTA+GGG 0.477217 4_3:+45508787 Msa0643060:three_prime_UTR
GAAGTTGGTCACATAAGGTT+TGG 0.478818 4_3:-45502049 None:intergenic
ACCTTATGTGACCAACTTCG+TGG 0.480142 4_3:+45502053 Msa0643060:CDS
ATTTCATTTAGTTATGGTTG+TGG 0.482152 4_3:+45508681 Msa0643060:three_prime_UTR
TGACGACCAGAGAGAACAAC+AGG 0.482392 4_3:-45502237 None:intergenic
TGCAAAACTCTTAGGCTACA+TGG 0.485609 4_3:+45505746 Msa0643060:CDS
TGGTTAAGAAACTTCACTTA+GGG 0.495579 4_3:+45508190 Msa0643060:CDS
CTGGAACAATCCAATGAAAC+CGG 0.499113 4_3:-45503111 None:intergenic
CTATGCTATTACTTGATCTC+AGG 0.499446 4_3:-45508462 None:intergenic
GCTACATGGTAACATGCAAC+AGG 0.500745 4_3:+45505760 Msa0643060:CDS
GGTTGAAAGTCAGAAAGAGT+AGG 0.501447 4_3:+45508786 Msa0643060:three_prime_UTR
TTAAGGTCGCTGATAAAAGC+AGG 0.502617 4_3:-45504502 None:intergenic
AAGAGAATTCAGCGCTCTGA+TGG 0.504712 4_3:+45502601 Msa0643060:CDS
TCTACTGATGTTTCTGCCAG+AGG 0.506421 4_3:+45505839 Msa0643060:CDS
GATCACCTTGGACGAGATGC+AGG 0.511915 4_3:-45507181 None:intergenic
ATTTGGAAAATCTAAGCCTC+TGG 0.513542 4_3:-45505855 None:intergenic
GTGAAGACCAAGGCTAGAAA+AGG 0.514667 4_3:-45502027 None:intergenic
TCACCACCCATAATGTATCC+TGG 0.517161 4_3:-45503130 None:intergenic
GTAGATCAAAGGAGAAAGCC+AGG 0.517865 4_3:+45503155 Msa0643060:CDS
GCAGAAACATGGTGTCTCAC+TGG 0.522548 4_3:+45507035 Msa0643060:CDS
TTAATTCAGAGATACATAAA+GGG 0.527509 4_3:+45504707 Msa0643060:CDS
ACTGCTCGACTTGGTGAAAG+AGG 0.527699 4_3:+45506961 Msa0643060:CDS
AGATTGGTTAATGCTGCTAC+GGG 0.528246 4_3:+45502520 Msa0643060:intron
TCGTGTACACAAATTTGCGC+TGG 0.529886 4_3:+45504222 Msa0643060:CDS
GGTAAATAGTCTATTTCAGA+TGG 0.531099 4_3:-45507006 None:intergenic
TTTCACATCGCAAAGTAGAA+TGG 0.539234 4_3:+45501875 Msa0643060:exon
AGTGATGAATTATCGGAGCC+AGG 0.539986 4_3:-45502564 None:intergenic
GTAACATGCAACAGGAGGAC+AGG 0.541248 4_3:+45505768 Msa0643060:CDS
GTGCATACACAGCGCATCGT+GGG 0.541411 4_3:+45508148 Msa0643060:CDS
GTACCCTCTTCTCAAAGTGT+TGG 0.542627 4_3:+45507062 Msa0643060:CDS
GGGCACGATGATCAAGAGAA+TGG 0.542777 4_3:+45504446 Msa0643060:CDS
CACGATGCGCTGTGTATGCA+CGG 0.545291 4_3:-45508146 None:intergenic
GTTGGAAGAACTGCTCGACT+TGG 0.546043 4_3:+45506952 Msa0643060:CDS
ACATATTCAGTGGCTTCTCC+GGG 0.549147 4_3:-45505905 None:intergenic
TTCTGGAGACACAAGATCCA+TGG 0.553790 4_3:-45507147 None:intergenic
AGGGAAGACTATTGCATACC+TGG 0.555873 4_3:+45502546 Msa0643060:CDS
TTCTTCAGAAGTTACTGCAC+CGG 0.556520 4_3:+45503092 Msa0643060:CDS
AGAAAGAGTTACCACGAAGT+TGG 0.558030 4_3:-45502064 None:intergenic
TGCAAACATAACTCACGCGT+TGG 0.558456 4_3:-45503058 None:intergenic
CACGATAATGGAACCAACAA+AGG 0.560969 4_3:+45501972 Msa0643060:CDS
TGAGTCCTGCATCTCGTCCA+AGG 0.564103 4_3:+45507176 Msa0643060:CDS
GAAAGACTTTCCAACTAAGG+AGG 0.566004 4_3:-45508247 None:intergenic
ATCATACAATATGATTCTCC+CGG 0.567525 4_3:+45505887 Msa0643060:CDS
GGGCACTTTATAAGGTCCTA+CGG 0.568230 4_3:-45504678 None:intergenic
CATAATGCAGACCATGAAAG+TGG 0.571012 4_3:+45508349 Msa0643060:exon
CAATTCTTATTGCAACTCCT+GGG 0.572028 4_3:+45504165 Msa0643060:CDS
TATCCAACACTTTGAGAAGA+GGG 0.573662 4_3:-45507065 None:intergenic
GGGTGGTGAAAGTAGATCAA+AGG 0.576121 4_3:+45503144 Msa0643060:CDS
TTACCAGACTTGCAGAAACA+TGG 0.576300 4_3:+45507024 Msa0643060:CDS
CTATCCAACACTTTGAGAAG+AGG 0.577028 4_3:-45507066 None:intergenic
ACTTTATAAGGTCCTACGGC+TGG 0.583960 4_3:-45504674 None:intergenic
AAGTGATCTAAAAGGCGCCC+AGG 0.584284 4_3:-45504182 None:intergenic
TGCAAGTTTGATGAAGCAAA+TGG 0.590397 4_3:+45508379 Msa0643060:three_prime_UTR
CTAAACACAAGAATGATATG+TGG 0.591842 4_3:+45508642 Msa0643060:three_prime_UTR
ATGGATCTTGTGTCTCCAGA+AGG 0.596234 4_3:+45507149 Msa0643060:CDS
GAGAAAGCCAGGCTGCGCAA+AGG 0.600911 4_3:+45503166 Msa0643060:CDS
TTAATGCTGCTACGGGCACA+GGG 0.607172 4_3:+45502527 Msa0643060:CDS
AGAATGATATGTGGATGGTA+CGG 0.610232 4_3:+45508651 Msa0643060:three_prime_UTR
GCTTGAGCTTGAATCAACGT+TGG 0.610845 4_3:-45502210 None:intergenic
ACGATGAACAAGAAGACCAA+AGG 0.611078 4_3:+45501900 Msa0643060:CDS
CAAGAAGACCAAAGGCAAAG+TGG 0.615301 4_3:+45501908 Msa0643060:CDS
AAAGACTTTCCAACTAAGGA+GGG 0.615349 4_3:-45508246 None:intergenic
GTACCTGTGCACATATTCAG+TGG 0.621315 4_3:-45505915 None:intergenic
ACACAAGAATGATATGTGGA+TGG 0.627359 4_3:+45508646 Msa0643060:three_prime_UTR
AAGCCACTGAATATGTGCAC+AGG 0.634355 4_3:+45505912 Msa0643060:CDS
GTTCCAGGATACATTATGGG+TGG 0.635731 4_3:+45503127 Msa0643060:CDS
TGCATACACAGCGCATCGTG+GGG 0.642958 4_3:+45508149 Msa0643060:CDS
CGTGCATACACAGCGCATCG+TGG 0.646681 4_3:+45508147 Msa0643060:CDS
TTACGACCATCAAATATGAG+TGG 0.651310 4_3:+45508765 Msa0643060:three_prime_UTR
TAAAGACAAAGCAACAACAA+TGG 0.656508 4_3:-45508874 None:intergenic
CGAATAAGAGAAAAGTTGCA+CGG 0.661018 4_3:+45508319 Msa0643060:CDS
ATAAGGTTTGGTGAAGACCA+AGG 0.664910 4_3:-45502037 None:intergenic
ACATGGTAACATGCAACAGG+AGG 0.675441 4_3:+45505763 Msa0643060:CDS
GATAAGTCGTCTACACAATG+TGG 0.692613 4_3:-45508620 None:intergenic
TCCAGTAAAGTACCAGCCGT+AGG 0.714902 4_3:+45504662 Msa0643060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTGTTTATTTATTT+TGG + chr4_3:45502162-45502181 Msa0643060:intron 10.0%
!!! AAAACAAAATAAGAAATTTT+TGG - chr4_3:45503811-45503830 None:intergenic 10.0%
!!! TTTTTTAAGATTATATAAAC+TGG - chr4_3:45506036-45506055 None:intergenic 10.0%
!!! TTAATATTTTTCATACTATT+TGG + chr4_3:45507742-45507761 Msa0643060:intron 10.0%
!! AAACAAAAAGATTAAAACTT+TGG - chr4_3:45502150-45502169 None:intergenic 15.0%
!! TGTTTAGAAACAAAATAAAA+AGG - chr4_3:45502270-45502289 None:intergenic 15.0%
!! GATAATATTAAGGTTTATAT+TGG + chr4_3:45502350-45502369 Msa0643060:intron 15.0%
!! TTGTTAAATGATTTCTTAAT+AGG + chr4_3:45502386-45502405 Msa0643060:intron 15.0%
!! TTCAAATCATTAATAGTTTA+AGG - chr4_3:45502422-45502441 None:intergenic 15.0%
!! AAACTATTAATGATTTGAAA+TGG + chr4_3:45502423-45502442 Msa0643060:intron 15.0%
!! TTTAATGAGAAAATTTAGAT+TGG + chr4_3:45502504-45502523 Msa0643060:intron 15.0%
!!! ATCATAGTAAAAATTTGTTT+TGG - chr4_3:45502815-45502834 None:intergenic 15.0%
!! TTCAATTATTGGATAATTTA+AGG - chr4_3:45502840-45502859 None:intergenic 15.0%
!!! ATTAATTTGTTTTCACTTAA+CGG - chr4_3:45502872-45502891 None:intergenic 15.0%
!!! CACAAATTTAATTAGTTTAT+TGG + chr4_3:45503015-45503034 Msa0643060:intron 15.0%
!!! GTTCACATTTTTAAAAATAA+AGG - chr4_3:45505037-45505056 None:intergenic 15.0%
!!! TTAGATTATATTGATTTTGA+TGG - chr4_3:45505195-45505214 None:intergenic 15.0%
!! ATCAAAATCAATATAATCTA+AGG + chr4_3:45505194-45505213 Msa0643060:intron 15.0%
!! TCATTTACTGTAAATTAAAT+AGG + chr4_3:45506064-45506083 Msa0643060:intron 15.0%
!!! AGATAATTACTAGTTTATAT+TGG + chr4_3:45506222-45506241 Msa0643060:intron 15.0%
!! TAAATTGTATCAAGATTTAA+TGG + chr4_3:45506277-45506296 Msa0643060:intron 15.0%
!!! TTCTAGAAATATAATATGTT+TGG - chr4_3:45506458-45506477 None:intergenic 15.0%
!!! TTCTAGAAATATAATATGTT+TGG - chr4_3:45506458-45506477 None:intergenic 15.0%
!! TGATTGATATATTAAGAATA+AGG - chr4_3:45507546-45507565 None:intergenic 15.0%
!! CTATAACAAAAGATAAAATA+AGG - chr4_3:45507926-45507945 None:intergenic 15.0%
!! ATTGTAATTTCATTTAGTTA+TGG + chr4_3:45508675-45508694 Msa0643060:three_prime_UTR 15.0%
!! TTAAATCATAATTCACTTCA+TGG + chr4_3:45502109-45502128 Msa0643060:intron 20.0%
!! TAAATCATAATTCACTTCAT+GGG + chr4_3:45502110-45502129 Msa0643060:intron 20.0%
!!! TATTAATGATTTGAAATGGA+GGG + chr4_3:45502427-45502446 Msa0643060:intron 20.0%
!! AAAATTTATCTATCACCTAA+AGG + chr4_3:45504081-45504100 Msa0643060:intron 20.0%
!!! CAAGAAATACTAAATCTTTT+AGG + chr4_3:45504410-45504429 Msa0643060:CDS 20.0%
!!! TTTTGTCTTTGAAATTTAGA+GGG - chr4_3:45504482-45504501 None:intergenic 20.0%
!!! TGGTATTGATGATAAAATAA+TGG + chr4_3:45504577-45504596 Msa0643060:intron 20.0%
!! TTAATTCAGAGATACATAAA+GGG + chr4_3:45504707-45504726 Msa0643060:CDS 20.0%
!! TTAAATTATTGCTTGTCAAT+AGG + chr4_3:45504963-45504982 Msa0643060:intron 20.0%
!!! GAAGTTTTAAATCAAGTTAA+AGG + chr4_3:45505415-45505434 Msa0643060:intron 20.0%
!! TGACAGCAAAAATAAAATAA+AGG - chr4_3:45505459-45505478 None:intergenic 20.0%
!!! TTTGAAACAAATGTGATTAA+TGG - chr4_3:45505560-45505579 None:intergenic 20.0%
!! AGAAAAACAGAAGATAAATT+AGG - chr4_3:45505940-45505959 None:intergenic 20.0%
!!! ATTTATCTTCTGTTTTTCTT+TGG + chr4_3:45505941-45505960 Msa0643060:intron 20.0%
!! AGTGAAAATGAATATTTGAA+AGG - chr4_3:45506125-45506144 None:intergenic 20.0%
!!! CTTCTATTAAATTATTGACT+TGG - chr4_3:45506190-45506209 None:intergenic 20.0%
!!! TTATATTTCTAGAATCGTAA+AGG + chr4_3:45506464-45506483 Msa0643060:intron 20.0%
!!! ATTATGATTTTTCACAAACT+GGG - chr4_3:45506577-45506596 None:intergenic 20.0%
!!! TATTATGATTTTTCACAAAC+TGG - chr4_3:45506578-45506597 None:intergenic 20.0%
!!! ATGGAAATGTTTTATCATAT+GGG - chr4_3:45506603-45506622 None:intergenic 20.0%
!!! TTATATTTCTAGAATCGTAA+AGG + chr4_3:45506464-45506483 Msa0643060:intron 20.0%
!!! ATTATGATTTTTCACAAACT+GGG - chr4_3:45506577-45506596 None:intergenic 20.0%
!!! TATTATGATTTTTCACAAAC+TGG - chr4_3:45506578-45506597 None:intergenic 20.0%
!!! TTTTTTTATCCTCTTTTAGT+CGG + chr4_3:45507254-45507273 Msa0643060:intron 20.0%
!!! TTTTTGTTACATTGTTTTAG+TGG + chr4_3:45507687-45507706 Msa0643060:intron 20.0%
!! ATAACAATATGATCCTAAAA+TGG + chr4_3:45508026-45508045 Msa0643060:intron 20.0%
!!! AAGAAACAAAAATCCATTTT+AGG - chr4_3:45508042-45508061 None:intergenic 20.0%
! AAAACTACTATTCACGATAA+TGG + chr4_3:45501960-45501979 Msa0643060:CDS 25.0%
!!! TTATTTTGGAACAGAAAGAA+TGG + chr4_3:45502176-45502195 Msa0643060:intron 25.0%
!!! TATTTTGGAACAGAAAGAAT+GGG + chr4_3:45502177-45502196 Msa0643060:intron 25.0%
!! CTATTAATGATTTGAAATGG+AGG + chr4_3:45502426-45502445 Msa0643060:intron 25.0%
!!! TGTTGGGTTTTTTGTTTAAT+TGG + chr4_3:45502477-45502496 Msa0643060:intron 25.0%
! TACATATTCACCTATTTGTT+CGG + chr4_3:45502693-45502712 Msa0643060:intron 25.0%
! ACTAAAACAGTGATATTGAT+AGG - chr4_3:45502973-45502992 None:intergenic 25.0%
! AGTTGTTCAAAAATTAAACC+AGG + chr4_3:45503256-45503275 Msa0643060:intron 25.0%
!!! CATAATTTTAACTACCTAGA+AGG - chr4_3:45503337-45503356 None:intergenic 25.0%
!!! TTGTCAAGTTGATTAAACTT+TGG + chr4_3:45503836-45503855 Msa0643060:intron 25.0%
!!! CTGTTAATTTGTGAGATTAT+GGG + chr4_3:45503873-45503892 Msa0643060:intron 25.0%
! GCTTGTAATGATTCAATTAT+AGG + chr4_3:45503909-45503928 Msa0643060:intron 25.0%
! AAGAATTGATATGCCTATAT+AGG - chr4_3:45504153-45504172 None:intergenic 25.0%
!!! TTTTGCAGTATTTTGGAATT+AGG + chr4_3:45504371-45504390 Msa0643060:intron 25.0%
!!! AGTATTTTGGAATTAGGATT+TGG + chr4_3:45504377-45504396 Msa0643060:intron 25.0%
!!! GTTTTGTCTTTGAAATTTAG+AGG - chr4_3:45504483-45504502 None:intergenic 25.0%
! GTTGTTTACTTTCTCATTTA+AGG - chr4_3:45504522-45504541 None:intergenic 25.0%
! GTTAATTCAGAGATACATAA+AGG + chr4_3:45504706-45504725 Msa0643060:CDS 25.0%
!!! TTCTAAAGCATCTTTTTGAA+AGG + chr4_3:45504859-45504878 Msa0643060:intron 25.0%
!!! TCTAAAGCATCTTTTTGAAA+GGG + chr4_3:45504860-45504879 Msa0643060:intron 25.0%
! GCATAGATGAAAAATGAATT+TGG - chr4_3:45505069-45505088 None:intergenic 25.0%
!! TTTTACTTAACCGTTCAAAA+AGG + chr4_3:45505101-45505120 Msa0643060:intron 25.0%
! AGTGAAGTAAAAATGAAAGT+TGG + chr4_3:45505325-45505344 Msa0643060:intron 25.0%
!! AAAAATGAAAGTTGGTTCAA+CGG + chr4_3:45505333-45505352 Msa0643060:intron 25.0%
! ATGGAAAGAAACTAAAAATC+TGG - chr4_3:45505524-45505543 None:intergenic 25.0%
!!! AGATTTTTAGTTTCTTTCCA+TGG + chr4_3:45505523-45505542 Msa0643060:intron 25.0%
! AAAGGATGAAAAAAGGAATT+CGG - chr4_3:45505687-45505706 None:intergenic 25.0%
! GAACAGAAAGAATCAATAAT+TGG - chr4_3:45505981-45506000 None:intergenic 25.0%
! ATTTGTATTCGGATTACAAT+AGG - chr4_3:45506006-45506025 None:intergenic 25.0%
! ACTGTAAATTAAATAGGACT+AGG + chr4_3:45506070-45506089 Msa0643060:intron 25.0%
! TTGGCTAGAATATTAAAATG+TGG + chr4_3:45506241-45506260 Msa0643060:intron 25.0%
! ACAATGCATAATAATATGCA+AGG - chr4_3:45506395-45506414 None:intergenic 25.0%
!! TTTTAACAAACGTGAGTAAA+CGG + chr4_3:45506499-45506518 Msa0643060:intron 25.0%
!! GATGGAAATGTTTTATCATA+TGG - chr4_3:45506604-45506623 None:intergenic 25.0%
! ACAATGCATAATAATATGCA+AGG - chr4_3:45506395-45506414 None:intergenic 25.0%
!! TTTTAACAAACGTGAGTAAA+CGG + chr4_3:45506499-45506518 Msa0643060:intron 25.0%
! ATATTCCCATATGATTTGAA+AGG + chr4_3:45506890-45506909 Msa0643060:intron 25.0%
! TTGAAAGGCTATCTTATTAA+TGG + chr4_3:45506905-45506924 Msa0643060:intron 25.0%
! ATTCAATAAGATTAGCAATG+AGG - chr4_3:45507206-45507225 None:intergenic 25.0%
! AACTATGAAACATTTCATGT+TGG + chr4_3:45507344-45507363 Msa0643060:intron 25.0%
! AAGTTATTCTATAGAGCTTA+TGG - chr4_3:45507867-45507886 None:intergenic 25.0%
! AAGAGATTTGAGAAGAAAAA+TGG + chr4_3:45508291-45508310 Msa0643060:CDS 25.0%
! AGAGATTTGAGAAGAAAAAT+GGG + chr4_3:45508292-45508311 Msa0643060:CDS 25.0%
!!! TTGAAACCAACATGTTTTTA+AGG - chr4_3:45508560-45508579 None:intergenic 25.0%
! ATTTCATTTAGTTATGGTTG+TGG + chr4_3:45508681-45508700 Msa0643060:three_prime_UTR 25.0%
! AGTTATTTGCACAATAATGT+TGG + chr4_3:45508734-45508753 Msa0643060:intron 25.0%
! TACTTCATGCTATAACTTGT+TGG + chr4_3:45502460-45502479 Msa0643060:intron 30.0%
!! ACTTCATGCTATAACTTGTT+GGG + chr4_3:45502461-45502480 Msa0643060:intron 30.0%
TCAACACTATTTAGTACCAT+TGG + chr4_3:45502651-45502670 Msa0643060:intron 30.0%
CAACACTATTTAGTACCATT+GGG + chr4_3:45502652-45502671 Msa0643060:intron 30.0%
AATGAAAAACAATGACCCAA+TGG - chr4_3:45502670-45502689 None:intergenic 30.0%
TGAGAGTTGAGATAGATAAT+AGG + chr4_3:45502727-45502746 Msa0643060:intron 30.0%
TAGGTTACACTACTTAGTAT+TGG + chr4_3:45502746-45502765 Msa0643060:intron 30.0%
!!! TTGGTTTTGTCATGTTACTT+TGG + chr4_3:45502765-45502784 Msa0643060:intron 30.0%
!! TTGTCATGTTACTTTGGATA+CGG + chr4_3:45502771-45502790 Msa0643060:intron 30.0%
! GGTTTCAGCTTTTCAATTAT+TGG - chr4_3:45502851-45502870 None:intergenic 30.0%
ATTGTTCCAGGATACATTAT+GGG + chr4_3:45503124-45503143 Msa0643060:CDS 30.0%
AATCAGAAAATGTTCTAGCA+CGG - chr4_3:45503409-45503428 None:intergenic 30.0%
TTGTGTTATAGCACAATACA+AGG - chr4_3:45503450-45503469 None:intergenic 30.0%
ACAATCTAGTGAAATTGCTT+GGG + chr4_3:45503466-45503485 Msa0643060:intron 30.0%
!! GCTGTTAATTTGTGAGATTA+TGG + chr4_3:45503872-45503891 Msa0643060:intron 30.0%
TATCTATCACCTAAAGGAAA+TGG + chr4_3:45504087-45504106 Msa0643060:intron 30.0%
TGTTCTTCAAGTGATCTAAA+AGG - chr4_3:45504193-45504212 None:intergenic 30.0%
! TAATTTTCGATGAAGCTGAT+CGG + chr4_3:45504246-45504265 Msa0643060:CDS 30.0%
! CTTTTCGTTTTGCAGTATTT+TGG + chr4_3:45504364-45504383 Msa0643060:intron 30.0%
!!! TTTTAGGTTCAATGAAGACA+GGG + chr4_3:45504426-45504445 Msa0643060:CDS 30.0%
TCATCAATACCAATCATAAC+TGG - chr4_3:45504569-45504588 None:intergenic 30.0%
TCAAATCTAATTCTTGACGT+TGG - chr4_3:45504605-45504624 None:intergenic 30.0%
TATCTCTGAATTAACTGTTC+GGG - chr4_3:45504701-45504720 None:intergenic 30.0%
GTATCTCTGAATTAACTGTT+CGG - chr4_3:45504702-45504721 None:intergenic 30.0%
TAAGATCATGCATACCTAAT+TGG + chr4_3:45504788-45504807 Msa0643060:intron 30.0%
CACTGCATAATAATCCAATT+AGG - chr4_3:45504805-45504824 None:intergenic 30.0%
!! ATGTCACTTACCTTTTTGAA+CGG - chr4_3:45505114-45505133 None:intergenic 30.0%
AATGATGTGACTTATAAGGA+AGG - chr4_3:45505591-45505610 None:intergenic 30.0%
GATGAATGATGTGACTTATA+AGG - chr4_3:45505595-45505614 None:intergenic 30.0%
TTTGTGGAAAGGATGAAAAA+AGG - chr4_3:45505694-45505713 None:intergenic 30.0%
!! TGCAGATTTCTCAGTTTTAA+AGG - chr4_3:45505810-45505829 None:intergenic 30.0%
ATCATACAATATGATTCTCC+CGG + chr4_3:45505887-45505906 Msa0643060:CDS 30.0%
!! TCTTCTGTTTTTCTTTGGTT+AGG + chr4_3:45505946-45505965 Msa0643060:intron 30.0%
!! CTTCTGTTTTTCTTTGGTTA+GGG + chr4_3:45505947-45505966 Msa0643060:intron 30.0%
!! ATTGACTTGGATATGTAATC+TGG - chr4_3:45506177-45506196 None:intergenic 30.0%
ATTTCCATCATTATCCTCAT+CGG + chr4_3:45506320-45506339 Msa0643060:intron 30.0%
!!! TTGCCTTTATGCTGTTTTTT+TGG + chr4_3:45506343-45506362 Msa0643060:intron 30.0%
!!! TGCCTTTATGCTGTTTTTTT+GGG + chr4_3:45506344-45506363 Msa0643060:intron 30.0%
TACCCAAAAAAACAGCATAA+AGG - chr4_3:45506349-45506368 None:intergenic 30.0%
TGTTTGGATAAACAGCATAA+AGG - chr4_3:45506442-45506461 None:intergenic 30.0%
TTTAACAAACGTGAGTAAAC+GGG + chr4_3:45506500-45506519 Msa0643060:intron 30.0%
ATTTCCATCATTATCCTCAT+CGG + chr4_3:45506320-45506339 Msa0643060:intron 30.0%
!!! TTGCCTTTATGCTGTTTTTT+TGG + chr4_3:45506343-45506362 Msa0643060:intron 30.0%
!!! TGCCTTTATGCTGTTTTTTT+GGG + chr4_3:45506344-45506363 Msa0643060:intron 30.0%
TACCCAAAAAAACAGCATAA+AGG - chr4_3:45506349-45506368 None:intergenic 30.0%
TGTTTGGATAAACAGCATAA+AGG - chr4_3:45506442-45506461 None:intergenic 30.0%
TTTAACAAACGTGAGTAAAC+GGG + chr4_3:45506500-45506519 Msa0643060:intron 30.0%
GATAGCCTTTCAAATCATAT+GGG - chr4_3:45506898-45506917 None:intergenic 30.0%
AGATAGCCTTTCAAATCATA+TGG - chr4_3:45506899-45506918 None:intergenic 30.0%
GGTAAATAGTCTATTTCAGA+TGG - chr4_3:45507009-45507028 None:intergenic 30.0%
CATGTCATCGAAGTTAAATT+TGG + chr4_3:45507281-45507300 Msa0643060:intron 30.0%
! GTTAAATTTGGAATCATCGT+TGG + chr4_3:45507293-45507312 Msa0643060:intron 30.0%
ATGTTCAGTGAAAAATCACA+AGG - chr4_3:45507723-45507742 None:intergenic 30.0%
!! AAACAGTTGATGAACATGTA+TGG - chr4_3:45507833-45507852 None:intergenic 30.0%
CATATTGTTATCAACCTGTT+TGG - chr4_3:45508017-45508036 None:intergenic 30.0%
GGAGCTGAAAAGAATATTTA+TGG + chr4_3:45508170-45508189 Msa0643060:CDS 30.0%
ATGGTTAAGAAACTTCACTT+AGG + chr4_3:45508189-45508208 Msa0643060:CDS 30.0%
TGGTTAAGAAACTTCACTTA+GGG + chr4_3:45508190-45508209 Msa0643060:CDS 30.0%
!! TTCTCTTCTTAGTTTGGTTT+TGG - chr4_3:45508272-45508291 None:intergenic 30.0%
ATCTCTTTCTCTTCTTAGTT+TGG - chr4_3:45508278-45508297 None:intergenic 30.0%
TTGTCTATCGATGAATTTGA+AGG - chr4_3:45508497-45508516 None:intergenic 30.0%
CTAAACACAAGAATGATATG+TGG + chr4_3:45508642-45508661 Msa0643060:three_prime_UTR 30.0%
TTTCAACCACTCATATTTGA+TGG - chr4_3:45508774-45508793 None:intergenic 30.0%
AACAGTTCTACAAACATGTT+AGG + chr4_3:45508811-45508830 Msa0643060:three_prime_UTR 30.0%
TAAAGACAAAGCAACAACAA+TGG - chr4_3:45508877-45508896 None:intergenic 30.0%
TTTCACATCGCAAAGTAGAA+TGG + chr4_3:45501875-45501894 Msa0643060:exon 35.0%
! GTTGTTATTGTCTCCTTTGT+TGG - chr4_3:45501988-45502007 None:intergenic 35.0%
! TAGATTGGTTAATGCTGCTA+CGG + chr4_3:45502519-45502538 Msa0643060:intron 35.0%
CTCTGCAAGTGATGAATTAT+CGG - chr4_3:45502574-45502593 None:intergenic 35.0%
ACAATAGAAGCCGAACAAAT+AGG - chr4_3:45502706-45502725 None:intergenic 35.0%
TAGTTTATTGGCAATAGCGT+TGG + chr4_3:45503027-45503046 Msa0643060:intron 35.0%
GATTGTTCCAGGATACATTA+TGG + chr4_3:45503123-45503142 Msa0643060:CDS 35.0%
TAGTGTCATAGTATCCTTCT+AGG + chr4_3:45503320-45503339 Msa0643060:intron 35.0%
AAATGTTCTAGCACGGTATT+GGG - chr4_3:45503402-45503421 None:intergenic 35.0%
AAAATGTTCTAGCACGGTAT+TGG - chr4_3:45503403-45503422 None:intergenic 35.0%
CACAATCTAGTGAAATTGCT+TGG + chr4_3:45503465-45503484 Msa0643060:intron 35.0%
! TAATGACAGACTTGAGCTTT+TGG - chr4_3:45503584-45503603 None:intergenic 35.0%
GTACTAAAAATCACACACTG+TGG - chr4_3:45503996-45504015 None:intergenic 35.0%
TCCTACATACAATTGGCAAA+GGG - chr4_3:45504018-45504037 None:intergenic 35.0%
ATCCTACATACAATTGGCAA+AGG - chr4_3:45504019-45504038 None:intergenic 35.0%
AACCTCTGTGATTCCTATAT+AGG + chr4_3:45504137-45504156 Msa0643060:intron 35.0%
TCAATTCTTATTGCAACTCC+TGG + chr4_3:45504164-45504183 Msa0643060:CDS 35.0%
CAATTCTTATTGCAACTCCT+GGG + chr4_3:45504165-45504184 Msa0643060:CDS 35.0%
AACGAAAAGACAAACATGTC+AGG - chr4_3:45504353-45504372 None:intergenic 35.0%
!!! CTTTTAGGTTCAATGAAGAC+AGG + chr4_3:45504425-45504444 Msa0643060:CDS 35.0%
!! CCTCTAAGCTAATTTTAGCA+AGG - chr4_3:45504544-45504563 None:intergenic 35.0%
! CCTTGCTAAAATTAGCTTAG+AGG + chr4_3:45504541-45504560 Msa0643060:CDS 35.0%
TTAGAGGATCCAGTTATGAT+TGG + chr4_3:45504557-45504576 Msa0643060:CDS 35.0%
TTGTCAACGAGAGTCTAATT+TGG + chr4_3:45505231-45505250 Msa0643060:intron 35.0%
TTCTTGGATGCAAAACTCTT+AGG + chr4_3:45505738-45505757 Msa0643060:CDS 35.0%
!!! AGTTTTAAAGGCCTGAAAAC+TGG - chr4_3:45505798-45505817 None:intergenic 35.0%
GTAATCCGAATACAAATGCT+AGG + chr4_3:45506009-45506028 Msa0643060:intron 35.0%
!!! TATGCTGTTTTTTTGGGTAG+TGG + chr4_3:45506350-45506369 Msa0643060:intron 35.0%
ATAATAATATGCAAGGTCCG+GGG - chr4_3:45506388-45506407 None:intergenic 35.0%
CATAATAATATGCAAGGTCC+GGG - chr4_3:45506389-45506408 None:intergenic 35.0%
GCATAATAATATGCAAGGTC+CGG - chr4_3:45506390-45506409 None:intergenic 35.0%
TTAACAAACGTGAGTAAACG+GGG + chr4_3:45506501-45506520 Msa0643060:intron 35.0%
!!! TATGCTGTTTTTTTGGGTAG+TGG + chr4_3:45506350-45506369 Msa0643060:intron 35.0%
ATAATAATATGCAAGGTCCG+GGG - chr4_3:45506388-45506407 None:intergenic 35.0%
CATAATAATATGCAAGGTCC+GGG - chr4_3:45506389-45506408 None:intergenic 35.0%
GCATAATAATATGCAAGGTC+CGG - chr4_3:45506390-45506409 None:intergenic 35.0%
TTAACAAACGTGAGTAAACG+GGG + chr4_3:45506501-45506520 Msa0643060:intron 35.0%
! TATCCAACACTTTGAGAAGA+GGG - chr4_3:45507068-45507087 None:intergenic 35.0%
!! TGTTCTTTTGTGCTGACATT+GGG - chr4_3:45507095-45507114 None:intergenic 35.0%
!! TTGTTCTTTTGTGCTGACAT+TGG - chr4_3:45507096-45507115 None:intergenic 35.0%
! TTTTCATAGACATGCATCCA+TGG + chr4_3:45507130-45507149 Msa0643060:CDS 35.0%
ACATGTTATCCGACTAAAAG+AGG - chr4_3:45507266-45507285 None:intergenic 35.0%
CACAGAAGAAAGGGAAAATT+AGG - chr4_3:45507464-45507483 None:intergenic 35.0%
! TTTTCCCTTTCTTCTGTGTT+TGG + chr4_3:45507466-45507485 Msa0643060:intron 35.0%
TTTCCCTTTCTTCTGTGTTT+GGG + chr4_3:45507467-45507486 Msa0643060:intron 35.0%
CAAAAACAAGCCACTAAAAC+TGG - chr4_3:45507667-45507686 None:intergenic 35.0%
ATTAAGCTGTTCATCCAAAC+AGG + chr4_3:45508000-45508019 Msa0643060:intron 35.0%
GACAATGACAAAGCAAGAAT+TGG - chr4_3:45508080-45508099 None:intergenic 35.0%
! TTGGCAAGTTCTTCCATTTT+GGG - chr4_3:45508105-45508124 None:intergenic 35.0%
AAAGACTTTCCAACTAAGGA+GGG - chr4_3:45508249-45508268 None:intergenic 35.0%
TTGGAAAGACTTTCCAACTA+AGG - chr4_3:45508253-45508272 None:intergenic 35.0%
! GCAACTTTTCTCTTATTCGA+TGG - chr4_3:45508318-45508337 None:intergenic 35.0%
CGAATAAGAGAAAAGTTGCA+CGG + chr4_3:45508319-45508338 Msa0643060:CDS 35.0%
TGCAAGTTTGATGAAGCAAA+TGG + chr4_3:45508379-45508398 Msa0643060:three_prime_UTR 35.0%
CTATGCTATTACTTGATCTC+AGG - chr4_3:45508465-45508484 None:intergenic 35.0%
AAGTAATAGCATAGCGCTAA+AGG + chr4_3:45508471-45508490 Msa0643060:three_prime_UTR 35.0%
! TACAACATGTCTGTTTCTTC+AGG + chr4_3:45508531-45508550 Msa0643060:three_prime_UTR 35.0%
ACACAAGAATGATATGTGGA+TGG + chr4_3:45508646-45508665 Msa0643060:three_prime_UTR 35.0%
AGAATGATATGTGGATGGTA+CGG + chr4_3:45508651-45508670 Msa0643060:three_prime_UTR 35.0%
TTACGACCATCAAATATGAG+TGG + chr4_3:45508765-45508784 Msa0643060:three_prime_UTR 35.0%
GTTGAAAGTCAGAAAGAGTA+GGG + chr4_3:45508787-45508806 Msa0643060:three_prime_UTR 35.0%
ACGATGAACAAGAAGACCAA+AGG + chr4_3:45501900-45501919 Msa0643060:CDS 40.0%
!! CACGATAATGGAACCAACAA+AGG + chr4_3:45501972-45501991 Msa0643060:CDS 40.0%
!! ATAAGGTTTGGTGAAGACCA+AGG - chr4_3:45502040-45502059 None:intergenic 40.0%
! GAAGTTGGTCACATAAGGTT+TGG - chr4_3:45502052-45502071 None:intergenic 40.0%
AGAAAGAGTTACCACGAAGT+TGG - chr4_3:45502067-45502086 None:intergenic 40.0%
! AGATTGGTTAATGCTGCTAC+GGG + chr4_3:45502520-45502539 Msa0643060:intron 40.0%
TTCTTCAGAAGTTACTGCAC+CGG + chr4_3:45503092-45503111 Msa0643060:CDS 40.0%
CTGGAACAATCCAATGAAAC+CGG - chr4_3:45503114-45503133 None:intergenic 40.0%
ACCAGGAATGTTGTCGAAAA+CGG + chr4_3:45503273-45503292 Msa0643060:intron 40.0%
! TCTGTGCATACTTGTTGAGT+TGG + chr4_3:45503492-45503511 Msa0643060:intron 40.0%
!! GCATACTTGTTGAGTTGGTT+CGG + chr4_3:45503497-45503516 Msa0643060:intron 40.0%
AATATACAGAGTCCTGCTTC+TGG + chr4_3:45503528-45503547 Msa0643060:intron 40.0%
!! AGACTTGAGCTTTTGGTTGA+AGG - chr4_3:45503577-45503596 None:intergenic 40.0%
AAGGAACTAGCATCAAAGAC+TGG - chr4_3:45503641-45503660 None:intergenic 40.0%
ACAGCAACCACTTGTACAAT+GGG - chr4_3:45503673-45503692 None:intergenic 40.0%
!!! GAAATTTTTGGCAAGCGACA+AGG - chr4_3:45503799-45503818 None:intergenic 40.0%
ACCCTTTGCCAATTGTATGT+AGG + chr4_3:45504014-45504033 Msa0643060:intron 40.0%
GCCAATTGTATGTAGGATCT+CGG + chr4_3:45504021-45504040 Msa0643060:intron 40.0%
TCCGAGATCCTACATACAAT+TGG - chr4_3:45504025-45504044 None:intergenic 40.0%
TGCCTATATAGGAATCACAG+AGG - chr4_3:45504142-45504161 None:intergenic 40.0%
TTAAGGTCGCTGATAAAAGC+AGG - chr4_3:45504505-45504524 None:intergenic 40.0%
AACTGTTCGGGCACTTTATA+AGG - chr4_3:45504689-45504708 None:intergenic 40.0%
GATTATTATGCAGTGCCTTG+TGG + chr4_3:45504810-45504829 Msa0643060:intron 40.0%
ACTCTCGTTGACAATAACGA+GGG - chr4_3:45505225-45505244 None:intergenic 40.0%
!! GAGTCTAATTTGGTTCTGAG+TGG + chr4_3:45505241-45505260 Msa0643060:intron 40.0%
TAATGGCAAATGTCAGTCCA+TGG - chr4_3:45505543-45505562 None:intergenic 40.0%
!! CATTCATCTATTGACTCCAC+AGG + chr4_3:45505607-45505626 Msa0643060:intron 40.0%
GAAAAGAATAGCACAACCTG+TGG - chr4_3:45505626-45505645 None:intergenic 40.0%
CATTGTTCTGTTCCCTTCTT+CGG - chr4_3:45505717-45505736 None:intergenic 40.0%
GGGAACAGAACAATGTTTCT+TGG + chr4_3:45505722-45505741 Msa0643060:CDS 40.0%
TGCAAAACTCTTAGGCTACA+TGG + chr4_3:45505746-45505765 Msa0643060:CDS 40.0%
CTGGTCCTAGCATTTGTATT+CGG - chr4_3:45506017-45506036 None:intergenic 40.0%
GTTAAATCATGACGCAGAGT+TGG + chr4_3:45506934-45506953 Msa0643060:intron 40.0%
TTACCAGACTTGCAGAAACA+TGG + chr4_3:45507024-45507043 Msa0643060:CDS 40.0%
! CTATCCAACACTTTGAGAAG+AGG - chr4_3:45507069-45507088 None:intergenic 40.0%
ATTAGCAATGAGGATCACCT+TGG - chr4_3:45507196-45507215 None:intergenic 40.0%
ACTCCCAAACACAGAAGAAA+GGG - chr4_3:45507473-45507492 None:intergenic 40.0%
AACTCCCAAACACAGAAGAA+AGG - chr4_3:45507474-45507493 None:intergenic 40.0%
AATGGGAGGTTAGTGAAGAA+AGG + chr4_3:45507508-45507527 Msa0643060:intron 40.0%
ATGGGAGGTTAGTGAAGAAA+GGG + chr4_3:45507509-45507528 Msa0643060:intron 40.0%
GAGCTCTTGTGAAACTGTTT+AGG + chr4_3:45507795-45507814 Msa0643060:intron 40.0%
TTGTCATTGTCAGCCCAAAA+TGG + chr4_3:45508089-45508108 Msa0643060:intron 40.0%
! CTTGGCAAGTTCTTCCATTT+TGG - chr4_3:45508106-45508125 None:intergenic 40.0%
!!! CAAGAGAGCATTTTGCTCTT+GGG + chr4_3:45508122-45508141 Msa0643060:CDS 40.0%
AAACAAACACCCTCCTTAGT+TGG + chr4_3:45508237-45508256 Msa0643060:CDS 40.0%
GAAAGACTTTCCAACTAAGG+AGG - chr4_3:45508250-45508269 None:intergenic 40.0%
CATAATGCAGACCATGAAAG+TGG + chr4_3:45508349-45508368 Msa0643060:exon 40.0%
! TGCACTATAAGCCACTTTCA+TGG - chr4_3:45508363-45508382 None:intergenic 40.0%
TGACACAATGACGTAGATTC+TGG - chr4_3:45508421-45508440 None:intergenic 40.0%
AGGCGTCCTTAAAAACATGT+TGG + chr4_3:45508551-45508570 Msa0643060:three_prime_UTR 40.0%
GATAAGTCGTCTACACAATG+TGG - chr4_3:45508623-45508642 None:intergenic 40.0%
!! GTTATGGTTGTGGTGTTACT+TGG + chr4_3:45508691-45508710 Msa0643060:three_prime_UTR 40.0%
GGTTGAAAGTCAGAAAGAGT+AGG + chr4_3:45508786-45508805 Msa0643060:three_prime_UTR 40.0%
CAAGAAGACCAAAGGCAAAG+TGG + chr4_3:45501908-45501927 Msa0643060:CDS 45.0%
! GCTTTTCACCACTTTGCCTT+TGG - chr4_3:45501919-45501938 None:intergenic 45.0%
!! TCCTGTTCCTTTTCTAGCCT+TGG + chr4_3:45502020-45502039 Msa0643060:CDS 45.0%
ACCAAGGCTAGAAAAGGAAC+AGG - chr4_3:45502024-45502043 None:intergenic 45.0%
GTGAAGACCAAGGCTAGAAA+AGG - chr4_3:45502030-45502049 None:intergenic 45.0%
ACCTTATGTGACCAACTTCG+TGG + chr4_3:45502053-45502072 Msa0643060:CDS 45.0%
! ACCACGAAGTTGGTCACATA+AGG - chr4_3:45502057-45502076 None:intergenic 45.0%
GCTTGAGCTTGAATCAACGT+TGG - chr4_3:45502213-45502232 None:intergenic 45.0%
GCTATTCCTGTTGTTCTCTC+TGG + chr4_3:45502231-45502250 Msa0643060:CDS 45.0%
AGGGAAGACTATTGCATACC+TGG + chr4_3:45502546-45502565 Msa0643060:CDS 45.0%
AGTGATGAATTATCGGAGCC+AGG - chr4_3:45502567-45502586 None:intergenic 45.0%
AAGAGAATTCAGCGCTCTGA+TGG + chr4_3:45502601-45502620 Msa0643060:CDS 45.0%
TGCAAACATAACTCACGCGT+TGG - chr4_3:45503061-45503080 None:intergenic 45.0%
AACGCGTGAGTTATGTTTGC+AGG + chr4_3:45503060-45503079 Msa0643060:CDS 45.0%
!! AGTTACTGCACCGGTTTCAT+TGG + chr4_3:45503101-45503120 Msa0643060:CDS 45.0%
CGGTTTCATTGGATTGTTCC+AGG + chr4_3:45503112-45503131 Msa0643060:CDS 45.0%
GTTCCAGGATACATTATGGG+TGG + chr4_3:45503127-45503146 Msa0643060:CDS 45.0%
TCACCACCCATAATGTATCC+TGG - chr4_3:45503133-45503152 None:intergenic 45.0%
GGGTGGTGAAAGTAGATCAA+AGG + chr4_3:45503144-45503163 Msa0643060:CDS 45.0%
GTAGATCAAAGGAGAAAGCC+AGG + chr4_3:45503155-45503174 Msa0643060:CDS 45.0%
CCAGGAATGTTGTCGAAAAC+GGG + chr4_3:45503274-45503293 Msa0643060:intron 45.0%
GAGTTTACAGTTCCAGAAGC+AGG - chr4_3:45503543-45503562 None:intergenic 45.0%
TCAAAGACTGGAACTGTGGA+AGG - chr4_3:45503629-45503648 None:intergenic 45.0%
AGCATCAAAGACTGGAACTG+TGG - chr4_3:45503633-45503652 None:intergenic 45.0%
GTACAATGGGAGGGATACAA+AGG - chr4_3:45503660-45503679 None:intergenic 45.0%
TATCCCTCCCATTGTACAAG+TGG + chr4_3:45503663-45503682 Msa0643060:intron 45.0%
CAACCACTTGTACAATGGGA+GGG - chr4_3:45503669-45503688 None:intergenic 45.0%
GACAGCAACCACTTGTACAA+TGG - chr4_3:45503674-45503693 None:intergenic 45.0%
ATTCACCACAACCAAACACC+CGG - chr4_3:45503734-45503753 None:intergenic 45.0%
ATGCAGTTGTGTGAGCTGTT+TGG + chr4_3:45503767-45503786 Msa0643060:intron 45.0%
CACACTGTGGAATCGTAACA+AGG - chr4_3:45503983-45504002 None:intergenic 45.0%
!! GTCGTTGTGCCATTTCCTTT+AGG - chr4_3:45504099-45504118 None:intergenic 45.0%
TCGTGTACACAAATTTGCGC+TGG + chr4_3:45504222-45504241 Msa0643060:CDS 45.0%
TTCGATGAAGCTGATCGGTA+TGG + chr4_3:45504251-45504270 Msa0643060:intron 45.0%
ACTTTATAAGGTCCTACGGC+TGG - chr4_3:45504677-45504696 None:intergenic 45.0%
GGGCACTTTATAAGGTCCTA+CGG - chr4_3:45504681-45504700 None:intergenic 45.0%
TGAAAGGGAACCTTCACAGA+AGG + chr4_3:45504875-45504894 Msa0643060:intron 45.0%
GACTCTCGTTGACAATAACG+AGG - chr4_3:45505226-45505245 None:intergenic 45.0%
! TTTGCTGTCATGCTTCTGTC+TGG + chr4_3:45505469-45505488 Msa0643060:intron 45.0%
! CTTTTCAACATGTGACGCAG+TGG + chr4_3:45505640-45505659 Msa0643060:intron 45.0%
TCCTTTCCACAAACCGAAGA+AGG + chr4_3:45505701-45505720 Msa0643060:intron 45.0%
CCTTTCCACAAACCGAAGAA+GGG + chr4_3:45505702-45505721 Msa0643060:intron 45.0%
GCTACATGGTAACATGCAAC+AGG + chr4_3:45505760-45505779 Msa0643060:CDS 45.0%
ACATGGTAACATGCAACAGG+AGG + chr4_3:45505763-45505782 Msa0643060:CDS 45.0%
! TCTACTGATGTTTCTGCCAG+AGG + chr4_3:45505839-45505858 Msa0643060:CDS 45.0%
ACATATTCAGTGGCTTCTCC+GGG - chr4_3:45505908-45505927 None:intergenic 45.0%
CACATATTCAGTGGCTTCTC+CGG - chr4_3:45505909-45505928 None:intergenic 45.0%
AAGCCACTGAATATGTGCAC+AGG + chr4_3:45505912-45505931 Msa0643060:CDS 45.0%
GTACCTGTGCACATATTCAG+TGG - chr4_3:45505918-45505937 None:intergenic 45.0%
GCAACCGATGAGGATAATGA+TGG - chr4_3:45506327-45506346 None:intergenic 45.0%
!!! CTGTTTTTTTGGGTAGTGGC+CGG + chr4_3:45506354-45506373 Msa0643060:intron 45.0%
!!! TGTTTTTTTGGGTAGTGGCC+GGG + chr4_3:45506355-45506374 Msa0643060:intron 45.0%
GCAACCGATGAGGATAATGA+TGG - chr4_3:45506327-45506346 None:intergenic 45.0%
!!! CTGTTTTTTTGGGTAGTGGC+CGG + chr4_3:45506354-45506373 Msa0643060:intron 45.0%
!!! TGTTTTTTTGGGTAGTGGCC+GGG + chr4_3:45506355-45506374 Msa0643060:intron 45.0%
! ACACCATGTTTCTGCAAGTC+TGG - chr4_3:45507030-45507049 None:intergenic 45.0%
GTACCCTCTTCTCAAAGTGT+TGG + chr4_3:45507062-45507081 Msa0643060:CDS 45.0%
! TTCTGGAGACACAAGATCCA+TGG - chr4_3:45507150-45507169 None:intergenic 45.0%
ATGGATCTTGTGTCTCCAGA+AGG + chr4_3:45507149-45507168 Msa0643060:CDS 45.0%
TGTGTTTGGGAGTTCTTGAG+TGG + chr4_3:45507480-45507499 Msa0643060:intron 45.0%
TTTGGGAGTTCTTGAGTGGA+GGG + chr4_3:45507484-45507503 Msa0643060:intron 45.0%
AGTTCTTGAGTGGAGGGAAA+TGG + chr4_3:45507490-45507509 Msa0643060:intron 45.0%
GTTCTTGAGTGGAGGGAAAT+GGG + chr4_3:45507491-45507510 Msa0643060:intron 45.0%
AGGTTAGTGAAGAAAGGGAG+AGG + chr4_3:45507514-45507533 Msa0643060:intron 45.0%
GGTTAGTGAAGAAAGGGAGA+GGG + chr4_3:45507515-45507534 Msa0643060:intron 45.0%
CCACTAAAACTGGAGATGGA+AGG - chr4_3:45507657-45507676 None:intergenic 45.0%
!! CCTTCCATCTCCAGTTTTAG+TGG + chr4_3:45507654-45507673 Msa0643060:intron 45.0%
CAAGCCACTAAAACTGGAGA+TGG - chr4_3:45507661-45507680 None:intergenic 45.0%
CCAAGAGCAAAATGCTCTCT+TGG - chr4_3:45508124-45508143 None:intergenic 45.0%
!!! CCAAGAGAGCATTTTGCTCT+TGG + chr4_3:45508121-45508140 Msa0643060:CDS 45.0%
!! AATAATTAATGATAATATTA+AGG + chr4_3:45502340-45502359 Msa0643060:intron 5.0%
!!! TGATTATATATTAAATTTTT+AGG + chr4_3:45503947-45503966 Msa0643060:intron 5.0%
!! ATATAATCTTAAAAAAAAAT+TGG + chr4_3:45506040-45506059 Msa0643060:intron 5.0%
TGACGACCAGAGAGAACAAC+AGG - chr4_3:45502240-45502259 None:intergenic 50.0%
TTAATGCTGCTACGGGCACA+GGG + chr4_3:45502527-45502546 Msa0643060:CDS 50.0%
CAGCGCTCTGATGGAACATT+TGG + chr4_3:45502610-45502629 Msa0643060:CDS 50.0%
ATTTCTACCTTTGCGCAGCC+TGG - chr4_3:45503176-45503195 None:intergenic 50.0%
! CCCGTTTTCGACAACATTCC+TGG - chr4_3:45503277-45503296 None:intergenic 50.0%
! CTAGCACGGTATTGGGATTG+CGG - chr4_3:45503395-45503414 None:intergenic 50.0%
GAAGGATTTGCAAGTCGAGG+AGG - chr4_3:45503611-45503630 None:intergenic 50.0%
GTGGAAGGATTTGCAAGTCG+AGG - chr4_3:45503614-45503633 None:intergenic 50.0%
GCAACCACTTGTACAATGGG+AGG - chr4_3:45503670-45503689 None:intergenic 50.0%
! ACGCTGATTGCGTCAGTTTC+CGG + chr4_3:45503712-45503731 Msa0643060:intron 50.0%
AGTTTCCGGGTGTTTGGTTG+TGG + chr4_3:45503726-45503745 Msa0643060:intron 50.0%
!! AAGTGATCTAAAAGGCGCCC+AGG - chr4_3:45504185-45504204 None:intergenic 50.0%
GGGCACGATGATCAAGAGAA+TGG + chr4_3:45504446-45504465 Msa0643060:CDS 50.0%
! TCCAGTAAAGTACCAGCCGT+AGG + chr4_3:45504662-45504681 Msa0643060:CDS 50.0%
TCCTACGGCTGGTACTTTAC+TGG - chr4_3:45504666-45504685 None:intergenic 50.0%
ATGCAGTGCCTTGTGGATCA+CGG + chr4_3:45504817-45504836 Msa0643060:intron 50.0%
ATAGCAAGCCGTGATCCACA+AGG - chr4_3:45504828-45504847 None:intergenic 50.0%
CAAAGCCTTGCCTTCTGTGA+AGG - chr4_3:45504888-45504907 None:intergenic 50.0%
! CCCTTCTTCGGTTTGTGGAA+AGG - chr4_3:45505705-45505724 None:intergenic 50.0%
! CTGTTCCCTTCTTCGGTTTG+TGG - chr4_3:45505710-45505729 None:intergenic 50.0%
GTAACATGCAACAGGAGGAC+AGG + chr4_3:45505768-45505787 Msa0643060:CDS 50.0%
! GGACAGGACAACCAGTTTTC+AGG + chr4_3:45505784-45505803 Msa0643060:CDS 50.0%
CAGCATAAAGGCAACCGATG+AGG - chr4_3:45506337-45506356 None:intergenic 50.0%
!!! GTTTTTTTGGGTAGTGGCCG+GGG + chr4_3:45506356-45506375 Msa0643060:intron 50.0%
GTCCATACCAACTGAGCACT+CGG + chr4_3:45506413-45506432 Msa0643060:intron 50.0%
CAGCATAAAGGCAACCGATG+AGG - chr4_3:45506337-45506356 None:intergenic 50.0%
!!! GTTTTTTTGGGTAGTGGCCG+GGG + chr4_3:45506356-45506375 Msa0643060:intron 50.0%
GTCCATACCAACTGAGCACT+CGG + chr4_3:45506413-45506432 Msa0643060:intron 50.0%
GTTGGAAGAACTGCTCGACT+TGG + chr4_3:45506952-45506971 Msa0643060:CDS 50.0%
!! ACTGCTCGACTTGGTGAAAG+AGG + chr4_3:45506961-45506980 Msa0643060:CDS 50.0%
GCAGAAACATGGTGTCTCAC+TGG + chr4_3:45507035-45507054 Msa0643060:CDS 50.0%
GTTTGGGAGTTCTTGAGTGG+AGG + chr4_3:45507483-45507502 Msa0643060:intron 50.0%
GTTAATGCTGCTACGGGCAC+AGG + chr4_3:45502526-45502545 Msa0643060:CDS 55.0%
! CGCTGATTGCGTCAGTTTCC+GGG + chr4_3:45503713-45503732 Msa0643060:intron 55.0%
TGCGTCAGTTTCCGGGTGTT+TGG + chr4_3:45503720-45503739 Msa0643060:intron 55.0%
GGGAACCTTCACAGAAGGCA+AGG + chr4_3:45504880-45504899 Msa0643060:intron 55.0%
! GTCCGAGTGCTCAGTTGGTA+TGG - chr4_3:45506418-45506437 None:intergenic 55.0%
! GTCCGAGTGCTCAGTTGGTA+TGG - chr4_3:45506418-45506437 None:intergenic 55.0%
TGCAGGACTCAAGTGCCTTC+TGG - chr4_3:45507167-45507186 None:intergenic 55.0%
TGAGTCCTGCATCTCGTCCA+AGG + chr4_3:45507176-45507195 Msa0643060:CDS 55.0%
GATCACCTTGGACGAGATGC+AGG - chr4_3:45507184-45507203 None:intergenic 55.0%
CTTGAGTGGAGGGAAATGGG+AGG + chr4_3:45507494-45507513 Msa0643060:intron 55.0%
CACGATGCGCTGTGTATGCA+CGG - chr4_3:45508149-45508168 None:intergenic 55.0%
GTGCATACACAGCGCATCGT+GGG + chr4_3:45508148-45508167 Msa0643060:CDS 55.0%
TGCATACACAGCGCATCGTG+GGG + chr4_3:45508149-45508168 Msa0643060:CDS 55.0%
GAGAAAGCCAGGCTGCGCAA+AGG + chr4_3:45503166-45503185 Msa0643060:CDS 60.0%
AAGGTCCGGGGTTCAAACCC+CGG - chr4_3:45506376-45506395 None:intergenic 60.0%
! AAGGCGTCCGAGTGCTCAGT+TGG - chr4_3:45506423-45506442 None:intergenic 60.0%
AAGGTCCGGGGTTCAAACCC+CGG - chr4_3:45506376-45506395 None:intergenic 60.0%
! AAGGCGTCCGAGTGCTCAGT+TGG - chr4_3:45506423-45506442 None:intergenic 60.0%
CGTGCATACACAGCGCATCG+TGG + chr4_3:45508147-45508166 Msa0643060:CDS 60.0%
AGTGGCCGGGGTTTGAACCC+CGG + chr4_3:45506368-45506387 Msa0643060:intron 65.0%
AGTGGCCGGGGTTTGAACCC+CGG + chr4_3:45506368-45506387 Msa0643060:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 45501874 45508923 45501874 ID=Msa0643060;Name=Msa0643060
chr4_3 mRNA 45501874 45508923 45501874 ID=Msa0643060-mRNA-1;Parent=Msa0643060;Name=Msa0643060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=20|0.8|0.72|1|0.7|0.54|11|547|541
chr4_3 exon 45501874 45502074 45501874 ID=Msa0643060-mRNA-1:exon:10513;Parent=Msa0643060-mRNA-1
chr4_3 exon 45502190 45502262 45502190 ID=Msa0643060-mRNA-1:exon:10514;Parent=Msa0643060-mRNA-1
chr4_3 exon 45502522 45502631 45502522 ID=Msa0643060-mRNA-1:exon:10515;Parent=Msa0643060-mRNA-1
chr4_3 exon 45503044 45503187 45503044 ID=Msa0643060-mRNA-1:exon:10516;Parent=Msa0643060-mRNA-1
chr4_3 exon 45504159 45504267 45504159 ID=Msa0643060-mRNA-1:exon:10517;Parent=Msa0643060-mRNA-1
chr4_3 exon 45504379 45504578 45504379 ID=Msa0643060-mRNA-1:exon:10518;Parent=Msa0643060-mRNA-1
chr4_3 exon 45504633 45504728 45504633 ID=Msa0643060-mRNA-1:exon:10519;Parent=Msa0643060-mRNA-1
chr4_3 exon 45505720 45505933 45505720 ID=Msa0643060-mRNA-1:exon:10520;Parent=Msa0643060-mRNA-1
chr4_3 exon 45506951 45507197 45506951 ID=Msa0643060-mRNA-1:exon:10521;Parent=Msa0643060-mRNA-1
chr4_3 exon 45508102 45508735 45508102 ID=Msa0643060-mRNA-1:exon:10522;Parent=Msa0643060-mRNA-1
chr4_3 exon 45508759 45508923 45508759 ID=Msa0643060-mRNA-1:exon:10523;Parent=Msa0643060-mRNA-1
chr4_3 five_prime_UTR 45501874 45501893 45501874 ID=Msa0643060-mRNA-1:five_prime_utr;Parent=Msa0643060-mRNA-1
chr4_3 CDS 45501894 45502074 45501894 ID=Msa0643060-mRNA-1:cds;Parent=Msa0643060-mRNA-1
chr4_3 CDS 45502190 45502262 45502190 ID=Msa0643060-mRNA-1:cds;Parent=Msa0643060-mRNA-1
chr4_3 CDS 45502522 45502631 45502522 ID=Msa0643060-mRNA-1:cds;Parent=Msa0643060-mRNA-1
chr4_3 CDS 45503044 45503187 45503044 ID=Msa0643060-mRNA-1:cds;Parent=Msa0643060-mRNA-1
chr4_3 CDS 45504159 45504267 45504159 ID=Msa0643060-mRNA-1:cds;Parent=Msa0643060-mRNA-1
chr4_3 CDS 45504379 45504578 45504379 ID=Msa0643060-mRNA-1:cds;Parent=Msa0643060-mRNA-1
chr4_3 CDS 45504633 45504728 45504633 ID=Msa0643060-mRNA-1:cds;Parent=Msa0643060-mRNA-1
chr4_3 CDS 45505720 45505933 45505720 ID=Msa0643060-mRNA-1:cds;Parent=Msa0643060-mRNA-1
chr4_3 CDS 45506951 45507197 45506951 ID=Msa0643060-mRNA-1:cds;Parent=Msa0643060-mRNA-1
chr4_3 CDS 45508102 45508353 45508102 ID=Msa0643060-mRNA-1:cds;Parent=Msa0643060-mRNA-1
chr4_3 three_prime_UTR 45508354 45508735 45508354 ID=Msa0643060-mRNA-1:three_prime_utr;Parent=Msa0643060-mRNA-1
chr4_3 three_prime_UTR 45508759 45508923 45508759 ID=Msa0643060-mRNA-1:three_prime_utr;Parent=Msa0643060-mRNA-1
Gene Sequence

>Msa0643060

ATGGCGACGATGAACAAGAAGACCAAAGGCAAAGTGGTGAAAAGCAATGAAAAAGAGATGAAGAAGAAAACTACTATTCACGATAATGGAACCAACAAAGGAGACAATAACAACAACGTTTTTGCTTCCTGTTCCTTTTCTAGCCTTGGTCTTCACCAAACCTTATGTGACCAACTTCGTGAAAGAATGGGTTTTGAAGCTCCAACGTTGATTCAAGCTCAAGCTATTCCTGTTGTTCTCTCTGGTCGTCATGCATTGGTTAATGCTGCTACGGGCACAGGGAAGACTATTGCATACCTGGCTCCGATAATTCATCACTTGCAGAGTTATGATAAGAGAATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAGTTATGTTTGCAGGTTCATGAAATTCTTCAGAAGTTACTGCACCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAAAGTAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATTGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAACACATCATCATTCGTGTACACAAATTTGCGCTGGATAATTTTCGATGAAGCTGATCGTATTTTGGAATTAGGATTTGGAAAAGAGATACAAGAAATACTAAATCTTTTAGGTTCAATGAAGACAGGGCACGATGATCAAGAGAATGGAGTTTCAAGACCCTCTAAATTTCAAAGACAAAACCTGCTTTTATCAGCGACCTTAAATGAGAAAGTAAACAACCTTGCTAAAATTAGCTTAGAGGATCCAGTTATGATTGATTGCGATGAAGACAATGAAGAGACACATTCCAGTAAAGTACCAGCCGTAGGACCTTATAAAGTGCCCGAACAGTTAATTCAGAGATACATAAAGGAAGGGAACAGAACAATGTTTCTTGGATGCAAAACTCTTAGGCTACATGGTAACATGCAACAGGAGGACAGGACAACCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCACTTCTTTTGTCTACTGATGTTTCTGCCAGAGGCTTAGATTTTCCAAATGTTAGATGCATCATACAATATGATTCTCCCGGAGAAGCCACTGAATATGTGCACAGAGTTGGAAGAACTGCTCGACTTGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAACCATCTGAAATAGACTATTTACCAGACTTGCAGAAACATGGTGTCTCACTGGCAGAGTACCCTCTTCTCAAAGTGTTGGATAGTTTCCCAATGTCAGCACAAAAGAACAACATAAAGAAATCTGTTTTCATAGACATGCATCCATGGATCTTGTGTCTCCAGAAGGCACTTGAGTCCTGCATCTCGTCCAAGCCCAAAATGGAAGAACTTGCCAAGAGAGCATTTTGCTCTTGGGTCCGTGCATACACAGCGCATCGTGGGGAGCTGAAAAGAATATTTATGGTTAAGAAACTTCACTTAGGGCACGTAGCAAAAAGCTTTGCATTGAAACAAACACCCTCCTTAGTTGGAAAGTCTTTCCAAAACCAAACTAAGAAGAGAAAGAGATTTGAGAAGAAAAATGGGCCATCGAATAAGAGAAAAGTTGCACGGCGTGTGACATAA
Protein sequence

>Msa0643060

MATMNKKTKGKVVKSNEKEMKKKTTIHDNGTNKGDNNNNVFASCSFSSLGLHQTLCDQLRERMGFEAPTLIQAQAIPVVLSGRHALVNAATGTGKTIAYLAPIIHHLQSYDKRIQRSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTSSFVYTNLRWIIFDEADRILELGFGKEIQEILNLLGSMKTGHDDQENGVSRPSKFQRQNLLLSATLNEKVNNLAKISLEDPVMIDCDEDNEETHSSKVPAVGPYKVPEQLIQRYIKEGNRTMFLGCKTLRLHGNMQQEDRTTSFQAFKTEKSALLLSTDVSARGLDFPNVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPSEIDYLPDLQKHGVSLAEYPLLKVLDSFPMSAQKNNIKKSVFIDMHPWILCLQKALESCISSKPKMEELAKRAFCSWVRAYTAHRGELKRIFMVKKLHLGHVAKSFALKQTPSLVGKSFQNQTKKRKRFEKKNGPSNKRKVARRVT*