AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1457920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457920 MtrunA17_Chr2g0278341 99.248 133 1 0 1 133 96 228 2.50e-95 274
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457920 AT1G25260.1 71.545 123 34 1 1 123 96 217 1.16e-58 181

Find 40 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAATATAAACTGAATAT+TGG 0.307619 tig0039277:+20872 None:intergenic
CAGCAGGGATGTGGCTTGTA+TGG 0.319458 tig0039277:-20942 Msa1457920:three_prime_UTR
AGAGCAGTTCACACATGATA+TGG 0.322264 tig0039277:-22169 Msa1457920:CDS
GACTGAACCTGGTTTGTAGA+TGG 0.358071 tig0039277:-21172 Msa1457920:CDS
ACCTGAAGCATCTCGTATAC+TGG 0.389289 tig0039277:-21958 Msa1457920:intron
GAACAGGCATGCCTTGCTTC+CGG 0.401326 tig0039277:+22136 None:intergenic
CAGCTATTGCGTGGAGATGC+TGG 0.406333 tig0039277:-22948 Msa1457920:CDS
AAAATTTGATTCTTAAGTTA+CGG 0.406742 tig0039277:+20918 None:intergenic
GTACCTTTATTTAACCGAAC+AGG 0.425105 tig0039277:+22120 None:intergenic
ATGCCTGTTCGGTTAAATAA+AGG 0.445190 tig0039277:-22123 Msa1457920:intron
ACTGAACCTGGTTTGTAGAT+GGG 0.448280 tig0039277:-21171 Msa1457920:CDS
TAGGCTGTTTAATGAATTTG+AGG 0.448398 tig0039277:-22579 Msa1457920:CDS
ATGTTGAAGATTACAAGATA+TGG 0.449326 tig0039277:-21070 Msa1457920:three_prime_UTR
ACCAGTATACGAGATGCTTC+AGG 0.450575 tig0039277:+21957 None:intergenic
TCCAAAATTCACAGGTGTTG+TGG 0.453240 tig0039277:-22027 Msa1457920:intron
GGAAGCAAGGCATGCCTGTT+CGG 0.453618 tig0039277:-22134 Msa1457920:CDS
TCATGTGTGAACTGCTCTAA+AGG 0.461609 tig0039277:+22174 None:intergenic
ATGCCTTGCTTCCGGAGAAA+AGG 0.467064 tig0039277:+22144 None:intergenic
GGATGCGACTTTGCAAGAAC+AGG 0.475150 tig0039277:-22557 Msa1457920:CDS
GGTGTGGATGCAATTTACTT+TGG 0.475626 tig0039277:-21049 Msa1457920:three_prime_UTR
GTGGATGCAATTTACTTTGG+AGG 0.481220 tig0039277:-21046 Msa1457920:three_prime_UTR
GACTTTGTTGTTTGTGAGGA+GGG 0.491569 tig0039277:-21993 Msa1457920:CDS
GGCTACGTTTCGACTGAACC+TGG 0.495680 tig0039277:-21183 Msa1457920:CDS
GAACTCTACATTGATGGGCC+TGG 0.523108 tig0039277:-21131 Msa1457920:CDS
AGGCTGTTTAATGAATTTGA+GGG 0.523767 tig0039277:-22578 Msa1457920:CDS
CTGAACCTGGTTTGTAGATG+GGG 0.535144 tig0039277:-21170 Msa1457920:CDS
CATTCAACATCTGAATCGCC+AGG 0.535824 tig0039277:+21113 None:intergenic
GATACAGTACTATGTAGTAT+TGG 0.536486 tig0039277:-21008 Msa1457920:three_prime_UTR
ACTGTTTCAGGTTGAACTCA+AGG 0.537015 tig0039277:-22202 Msa1457920:intron
GCGTTTGATGGGAAATATGA+TGG 0.540790 tig0039277:-21204 Msa1457920:CDS
TTCTGACTTTGTTGTTTGTG+AGG 0.545701 tig0039277:-21997 Msa1457920:CDS
TGACTTTGTTGTTTGTGAGG+AGG 0.559551 tig0039277:-21994 Msa1457920:CDS
TGTCTAAAGAAGAAGTTGAA+AGG 0.565730 tig0039277:-22908 Msa1457920:intron
CAGAACCCCATCTACAAACC+AGG 0.589817 tig0039277:+21165 None:intergenic
CGAGATGCTTCAGGTGACAA+AGG 0.595978 tig0039277:+21966 None:intergenic
GGTTTGTAGATGGGGTTCTG+AGG 0.610326 tig0039277:-21162 Msa1457920:CDS
AGTACTGTATCACTACATCA+AGG 0.640398 tig0039277:+21020 None:intergenic
TTTCAGGTTGAACTCAAGGA+GGG 0.645581 tig0039277:-22198 Msa1457920:intron
GAAGATTACAAGATATGGTG+TGG 0.670814 tig0039277:-21065 Msa1457920:three_prime_UTR
GTTTCAGGTTGAACTCAAGG+AGG 0.696156 tig0039277:-22199 Msa1457920:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTGATGCTATTTAT+AGG - tig0039277:21188-21207 Msa1457920:CDS 15.0%
!! ACATAAAAATGAAAGATATA+GGG + tig0039277:22125-22144 None:intergenic 15.0%
!! TACATAAAAATGAAAGATAT+AGG + tig0039277:22126-22145 None:intergenic 15.0%
!! AACTAAAAAGTAATTAATGA+TGG + tig0039277:22269-22288 None:intergenic 15.0%
!! AAAATTTGATTCTTAAGTTA+CGG + tig0039277:22871-22890 None:intergenic 15.0%
!! TGATAATATAAACTGAATAT+TGG + tig0039277:22917-22936 None:intergenic 15.0%
!!! TTTTTATTGATGCTATTTAT+AGG - tig0039277:21188-21207 Msa1457920:CDS 15.0%
!! ACATAAAAATGAAAGATATA+GGG + tig0039277:22125-22144 None:intergenic 15.0%
!! TACATAAAAATGAAAGATAT+AGG + tig0039277:22126-22145 None:intergenic 15.0%
!! AACTAAAAAGTAATTAATGA+TGG + tig0039277:22269-22288 None:intergenic 15.0%
!! AAAATTTGATTCTTAAGTTA+CGG + tig0039277:22871-22890 None:intergenic 15.0%
!! TGATAATATAAACTGAATAT+TGG + tig0039277:22917-22936 None:intergenic 15.0%
!! CAAATTTAATGTACGATTAT+TGG - tig0039277:20945-20964 Msa1457920:three_prime_UTR 20.0%
!!! AATTTTGCTTGAATAAACAT+TGG - tig0039277:21081-21100 Msa1457920:three_prime_UTR 20.0%
!! AAATAGCATCAATAAAAATC+AGG + tig0039277:21186-21205 None:intergenic 20.0%
!!! TCATTTTCTTAAATCATTAC+CGG + tig0039277:21388-21407 None:intergenic 20.0%
!! AAGAAAATGACATAATTGAA+TGG - tig0039277:21398-21417 Msa1457920:intron 20.0%
!! GAAATTAGTAACACTAAATA+TGG + tig0039277:22022-22041 None:intergenic 20.0%
!!! TATTTAGTGTTACTAATTTC+AGG - tig0039277:22022-22041 Msa1457920:intron 20.0%
!! AAAAAGTAATTAATGATGGT+GGG + tig0039277:22265-22284 None:intergenic 20.0%
!! TAAAAAGTAATTAATGATGG+TGG + tig0039277:22266-22285 None:intergenic 20.0%
!! ATTAATTACTTCAATAACCA+AGG + tig0039277:22454-22473 None:intergenic 20.0%
!!! TTGAAGTAATTAATTAGTCT+CGG - tig0039277:22460-22479 Msa1457920:intron 20.0%
!! TGATGTACATACTATAATAA+TGG + tig0039277:22521-22540 None:intergenic 20.0%
!!! TTGTGAACTAGAAATATTTT+TGG - tig0039277:22889-22908 Msa1457920:intron 20.0%
!! CAAATTTAATGTACGATTAT+TGG - tig0039277:20945-20964 Msa1457920:three_prime_UTR 20.0%
!!! AATTTTGCTTGAATAAACAT+TGG - tig0039277:21081-21100 Msa1457920:three_prime_UTR 20.0%
!! AAATAGCATCAATAAAAATC+AGG + tig0039277:21186-21205 None:intergenic 20.0%
!!! TCATTTTCTTAAATCATTAC+CGG + tig0039277:21388-21407 None:intergenic 20.0%
!! AAGAAAATGACATAATTGAA+TGG - tig0039277:21398-21417 Msa1457920:intron 20.0%
!! GAAATTAGTAACACTAAATA+TGG + tig0039277:22022-22041 None:intergenic 20.0%
!!! TATTTAGTGTTACTAATTTC+AGG - tig0039277:22022-22041 Msa1457920:intron 20.0%
!! AAAAAGTAATTAATGATGGT+GGG + tig0039277:22265-22284 None:intergenic 20.0%
!! TAAAAAGTAATTAATGATGG+TGG + tig0039277:22266-22285 None:intergenic 20.0%
!! ATTAATTACTTCAATAACCA+AGG + tig0039277:22454-22473 None:intergenic 20.0%
!!! TTGAAGTAATTAATTAGTCT+CGG - tig0039277:22460-22479 Msa1457920:intron 20.0%
!! TGATGTACATACTATAATAA+TGG + tig0039277:22521-22540 None:intergenic 20.0%
!!! TTGTGAACTAGAAATATTTT+TGG - tig0039277:22889-22908 Msa1457920:intron 20.0%
! TATAGTAGCTGATATTCAAT+TGG - tig0039277:21013-21032 Msa1457920:three_prime_UTR 25.0%
!! CTGATATTCAATTGGTAATT+TGG - tig0039277:21021-21040 Msa1457920:three_prime_UTR 25.0%
!!! ATCGTTAACCTTTTTCAATA+GGG - tig0039277:21104-21123 Msa1457920:exon 25.0%
! ATTATAGGTTTCTACTAACA+AGG + tig0039277:21325-21344 None:intergenic 25.0%
!! ACTCATTCAATTAAAAGTGT+TGG - tig0039277:21456-21475 Msa1457920:intron 25.0%
!!! GTCAATTATTAGTCTTCAAT+TGG + tig0039277:21736-21755 None:intergenic 25.0%
! TAAAAATGAAAGATATAGGG+AGG + tig0039277:22122-22141 None:intergenic 25.0%
! CAAACAAGAAAAAATCAATG+GGG + tig0039277:22174-22193 None:intergenic 25.0%
! CCAAACAAGAAAAAATCAAT+GGG + tig0039277:22175-22194 None:intergenic 25.0%
!!! CCATTGATTTTTTCTTGTTT+GGG - tig0039277:22173-22192 Msa1457920:CDS 25.0%
! GAAATGGAGAGAATAATAAA+TGG - tig0039277:22328-22347 Msa1457920:intron 25.0%
!! TATAATAATGGTGCTAATTG+AGG + tig0039277:22509-22528 None:intergenic 25.0%
!! ATTTTGAACTCTACATTGAT+GGG - tig0039277:22650-22669 Msa1457920:intron 25.0%
! ATGTTGAAGATTACAAGATA+TGG - tig0039277:22716-22735 Msa1457920:intron 25.0%
! TATAGTAGCTGATATTCAAT+TGG - tig0039277:21013-21032 Msa1457920:three_prime_UTR 25.0%
!! CTGATATTCAATTGGTAATT+TGG - tig0039277:21021-21040 Msa1457920:three_prime_UTR 25.0%
!!! ATCGTTAACCTTTTTCAATA+GGG - tig0039277:21104-21123 Msa1457920:exon 25.0%
! ATTATAGGTTTCTACTAACA+AGG + tig0039277:21325-21344 None:intergenic 25.0%
!! ACTCATTCAATTAAAAGTGT+TGG - tig0039277:21456-21475 Msa1457920:intron 25.0%
!!! GTCAATTATTAGTCTTCAAT+TGG + tig0039277:21736-21755 None:intergenic 25.0%
! TAAAAATGAAAGATATAGGG+AGG + tig0039277:22122-22141 None:intergenic 25.0%
! CAAACAAGAAAAAATCAATG+GGG + tig0039277:22174-22193 None:intergenic 25.0%
! CCAAACAAGAAAAAATCAAT+GGG + tig0039277:22175-22194 None:intergenic 25.0%
!!! CCATTGATTTTTTCTTGTTT+GGG - tig0039277:22173-22192 Msa1457920:CDS 25.0%
! GAAATGGAGAGAATAATAAA+TGG - tig0039277:22328-22347 Msa1457920:intron 25.0%
!! TATAATAATGGTGCTAATTG+AGG + tig0039277:22509-22528 None:intergenic 25.0%
!! ATTTTGAACTCTACATTGAT+GGG - tig0039277:22650-22669 Msa1457920:intron 25.0%
! ATGTTGAAGATTACAAGATA+TGG - tig0039277:22716-22735 Msa1457920:intron 25.0%
TGTCTAAAGAAGAAGTTGAA+AGG - tig0039277:20878-20897 Msa1457920:three_prime_UTR 30.0%
TGATATGCTAAACATGTTTC+TGG - tig0039277:21052-21071 Msa1457920:three_prime_UTR 30.0%
GATATGCTAAACATGTTTCT+GGG - tig0039277:21053-21072 Msa1457920:three_prime_UTR 30.0%
! ATATGCTAAACATGTTTCTG+GGG - tig0039277:21054-21073 Msa1457920:three_prime_UTR 30.0%
!!! GATCGTTAACCTTTTTCAAT+AGG - tig0039277:21103-21122 Msa1457920:exon 30.0%
!!! TCGTTAACCTTTTTCAATAG+GGG - tig0039277:21105-21124 Msa1457920:exon 30.0%
CATCAATAAAAATCAGGTTC+TGG + tig0039277:21180-21199 None:intergenic 30.0%
TAGGCTGTTTAATGAATTTG+AGG - tig0039277:21207-21226 Msa1457920:intron 30.0%
AGGCTGTTTAATGAATTTGA+GGG - tig0039277:21208-21227 Msa1457920:intron 30.0%
!!! CTAGATTCAACCTACTTTTT+CGG + tig0039277:21266-21285 None:intergenic 30.0%
!! CTTTTAATTGAATGAGTGTC+TGG + tig0039277:21453-21472 None:intergenic 30.0%
!! ATTATTAGTCTTCAATTGGC+AGG + tig0039277:21732-21751 None:intergenic 30.0%
CTGATATTGCAAGTTCTATT+GGG + tig0039277:21916-21935 None:intergenic 30.0%
GGATAATGTGAACAATCAAA+TGG + tig0039277:22153-22172 None:intergenic 30.0%
!!! CCCATTGATTTTTTCTTGTT+TGG - tig0039277:22172-22191 Msa1457920:CDS 30.0%
CCCAAACAAGAAAAAATCAA+TGG + tig0039277:22176-22195 None:intergenic 30.0%
!!! TTGATTTTTTCTTGTTTGGG+TGG - tig0039277:22176-22195 Msa1457920:CDS 30.0%
!!! TGATTTTTTCTTGTTTGGGT+GGG - tig0039277:22177-22196 Msa1457920:CDS 30.0%
TTGACACATAAAATAGACAG+TGG - tig0039277:22220-22239 Msa1457920:intron 30.0%
TGACACATAAAATAGACAGT+GGG - tig0039277:22221-22240 Msa1457920:intron 30.0%
ACATCATCAACGTTATAATG+TGG - tig0039277:22535-22554 Msa1457920:intron 30.0%
! GATTTTGAACTCTACATTGA+TGG - tig0039277:22649-22668 Msa1457920:intron 30.0%
GATACAGTACTATGTAGTAT+TGG - tig0039277:22778-22797 Msa1457920:intron 30.0%
! TTGATGAATGTATTTTCAGC+AGG - tig0039277:22828-22847 Msa1457920:intron 30.0%
! TGATGAATGTATTTTCAGCA+GGG - tig0039277:22829-22848 Msa1457920:intron 30.0%
TGTCTAAAGAAGAAGTTGAA+AGG - tig0039277:20878-20897 Msa1457920:three_prime_UTR 30.0%
TGATATGCTAAACATGTTTC+TGG - tig0039277:21052-21071 Msa1457920:three_prime_UTR 30.0%
GATATGCTAAACATGTTTCT+GGG - tig0039277:21053-21072 Msa1457920:three_prime_UTR 30.0%
! ATATGCTAAACATGTTTCTG+GGG - tig0039277:21054-21073 Msa1457920:three_prime_UTR 30.0%
!!! GATCGTTAACCTTTTTCAAT+AGG - tig0039277:21103-21122 Msa1457920:exon 30.0%
!!! TCGTTAACCTTTTTCAATAG+GGG - tig0039277:21105-21124 Msa1457920:exon 30.0%
CATCAATAAAAATCAGGTTC+TGG + tig0039277:21180-21199 None:intergenic 30.0%
TAGGCTGTTTAATGAATTTG+AGG - tig0039277:21207-21226 Msa1457920:intron 30.0%
AGGCTGTTTAATGAATTTGA+GGG - tig0039277:21208-21227 Msa1457920:intron 30.0%
!!! CTAGATTCAACCTACTTTTT+CGG + tig0039277:21266-21285 None:intergenic 30.0%
!! CTTTTAATTGAATGAGTGTC+TGG + tig0039277:21453-21472 None:intergenic 30.0%
!! ATTATTAGTCTTCAATTGGC+AGG + tig0039277:21732-21751 None:intergenic 30.0%
CTGATATTGCAAGTTCTATT+GGG + tig0039277:21916-21935 None:intergenic 30.0%
GGATAATGTGAACAATCAAA+TGG + tig0039277:22153-22172 None:intergenic 30.0%
!!! CCCATTGATTTTTTCTTGTT+TGG - tig0039277:22172-22191 Msa1457920:CDS 30.0%
CCCAAACAAGAAAAAATCAA+TGG + tig0039277:22176-22195 None:intergenic 30.0%
!!! TTGATTTTTTCTTGTTTGGG+TGG - tig0039277:22176-22195 Msa1457920:CDS 30.0%
!!! TGATTTTTTCTTGTTTGGGT+GGG - tig0039277:22177-22196 Msa1457920:CDS 30.0%
TTGACACATAAAATAGACAG+TGG - tig0039277:22220-22239 Msa1457920:intron 30.0%
TGACACATAAAATAGACAGT+GGG - tig0039277:22221-22240 Msa1457920:intron 30.0%
ACATCATCAACGTTATAATG+TGG - tig0039277:22535-22554 Msa1457920:intron 30.0%
! GATTTTGAACTCTACATTGA+TGG - tig0039277:22649-22668 Msa1457920:intron 30.0%
GATACAGTACTATGTAGTAT+TGG - tig0039277:22778-22797 Msa1457920:intron 30.0%
! TTGATGAATGTATTTTCAGC+AGG - tig0039277:22828-22847 Msa1457920:intron 30.0%
! TGATGAATGTATTTTCAGCA+GGG - tig0039277:22829-22848 Msa1457920:intron 30.0%
!!! CGTTAACCTTTTTCAATAGG+GGG - tig0039277:21106-21125 Msa1457920:exon 35.0%
!!! GTTAACCTTTTTCAATAGGG+GGG - tig0039277:21107-21126 Msa1457920:exon 35.0%
TTGAATGGAATCACACATGT+CGG - tig0039277:21413-21432 Msa1457920:intron 35.0%
!! TAAAAGTGTTGGTGCTACAA+AGG - tig0039277:21467-21486 Msa1457920:intron 35.0%
TTTCAAGATCTGACTGTTTC+AGG - tig0039277:21572-21591 Msa1457920:intron 35.0%
! ATGATATGGAACCTTTTCTC+CGG - tig0039277:21631-21650 Msa1457920:intron 35.0%
ATGCCTGTTCGGTTAAATAA+AGG - tig0039277:21663-21682 Msa1457920:intron 35.0%
! GTACCTTTATTTAACCGAAC+AGG + tig0039277:21669-21688 None:intergenic 35.0%
TTGACGTTTCCAAAATTCAC+AGG - tig0039277:21751-21770 Msa1457920:intron 35.0%
!! TTCTGACTTTGTTGTTTGTG+AGG - tig0039277:21789-21808 Msa1457920:intron 35.0%
CCTGATATTGCAAGTTCTAT+TGG + tig0039277:21917-21936 None:intergenic 35.0%
CCAATAGAACTTGCAATATC+AGG - tig0039277:21914-21933 Msa1457920:intron 35.0%
ATAGGCAGGAAGTAGTTATT+AGG + tig0039277:21988-22007 None:intergenic 35.0%
TAATAACTACTTCCTGCCTA+TGG - tig0039277:21987-22006 Msa1457920:CDS 35.0%
AATAACTACTTCCTGCCTAT+GGG - tig0039277:21988-22007 Msa1457920:CDS 35.0%
AATATGGTCGAATAACCCAT+AGG + tig0039277:22006-22025 None:intergenic 35.0%
TGTGTCTATATCTCTCCAAA+TGG - tig0039277:22303-22322 Msa1457920:intron 35.0%
ATCTCTCCAAATGGATGAAA+TGG - tig0039277:22312-22331 Msa1457920:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + tig0039277:22321-22340 None:intergenic 35.0%
GGAGAGAATAATAAATGGAG+AGG - tig0039277:22333-22352 Msa1457920:intron 35.0%
AATAACCAAGGTCAAGATGT+TGG + tig0039277:22442-22461 None:intergenic 35.0%
GAAGATTACAAGATATGGTG+TGG - tig0039277:22721-22740 Msa1457920:intron 35.0%
AGTACTGTATCACTACATCA+AGG + tig0039277:22769-22788 None:intergenic 35.0%
!!! CGTTAACCTTTTTCAATAGG+GGG - tig0039277:21106-21125 Msa1457920:exon 35.0%
!!! GTTAACCTTTTTCAATAGGG+GGG - tig0039277:21107-21126 Msa1457920:exon 35.0%
TTGAATGGAATCACACATGT+CGG - tig0039277:21413-21432 Msa1457920:intron 35.0%
!! TAAAAGTGTTGGTGCTACAA+AGG - tig0039277:21467-21486 Msa1457920:intron 35.0%
TTTCAAGATCTGACTGTTTC+AGG - tig0039277:21572-21591 Msa1457920:intron 35.0%
! ATGATATGGAACCTTTTCTC+CGG - tig0039277:21631-21650 Msa1457920:intron 35.0%
ATGCCTGTTCGGTTAAATAA+AGG - tig0039277:21663-21682 Msa1457920:intron 35.0%
! GTACCTTTATTTAACCGAAC+AGG + tig0039277:21669-21688 None:intergenic 35.0%
TTGACGTTTCCAAAATTCAC+AGG - tig0039277:21751-21770 Msa1457920:intron 35.0%
!! TTCTGACTTTGTTGTTTGTG+AGG - tig0039277:21789-21808 Msa1457920:intron 35.0%
CCTGATATTGCAAGTTCTAT+TGG + tig0039277:21917-21936 None:intergenic 35.0%
CCAATAGAACTTGCAATATC+AGG - tig0039277:21914-21933 Msa1457920:intron 35.0%
ATAGGCAGGAAGTAGTTATT+AGG + tig0039277:21988-22007 None:intergenic 35.0%
TAATAACTACTTCCTGCCTA+TGG - tig0039277:21987-22006 Msa1457920:CDS 35.0%
AATAACTACTTCCTGCCTAT+GGG - tig0039277:21988-22007 Msa1457920:CDS 35.0%
AATATGGTCGAATAACCCAT+AGG + tig0039277:22006-22025 None:intergenic 35.0%
TGTGTCTATATCTCTCCAAA+TGG - tig0039277:22303-22322 Msa1457920:intron 35.0%
ATCTCTCCAAATGGATGAAA+TGG - tig0039277:22312-22331 Msa1457920:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + tig0039277:22321-22340 None:intergenic 35.0%
GGAGAGAATAATAAATGGAG+AGG - tig0039277:22333-22352 Msa1457920:intron 35.0%
AATAACCAAGGTCAAGATGT+TGG + tig0039277:22442-22461 None:intergenic 35.0%
GAAGATTACAAGATATGGTG+TGG - tig0039277:22721-22740 Msa1457920:intron 35.0%
AGTACTGTATCACTACATCA+AGG + tig0039277:22769-22788 None:intergenic 35.0%
GAAAACCCCCCTATTGAAAA+AGG + tig0039277:21115-21134 None:intergenic 40.0%
!!! GATTCAACCTACTTTTTCGG+TGG + tig0039277:21263-21282 None:intergenic 40.0%
TGTCTGTGTAGGTGCATTAT+AGG + tig0039277:21340-21359 None:intergenic 40.0%
!! TCGACATGTCAGTGTTGTTT+CGG + tig0039277:21363-21382 None:intergenic 40.0%
!! ACTGTTTCAGGTTGAACTCA+AGG - tig0039277:21584-21603 Msa1457920:intron 40.0%
!! TTTCAGGTTGAACTCAAGGA+GGG - tig0039277:21588-21607 Msa1457920:intron 40.0%
TCATGTGTGAACTGCTCTAA+AGG + tig0039277:21615-21634 None:intergenic 40.0%
AGAGCAGTTCACACATGATA+TGG - tig0039277:21617-21636 Msa1457920:intron 40.0%
! TCCAAAATTCACAGGTGTTG+TGG - tig0039277:21759-21778 Msa1457920:intron 40.0%
! TCCACAACACCTGTGAATTT+TGG + tig0039277:21763-21782 None:intergenic 40.0%
!! TGACTTTGTTGTTTGTGAGG+AGG - tig0039277:21792-21811 Msa1457920:intron 40.0%
!! GACTTTGTTGTTTGTGAGGA+GGG - tig0039277:21793-21812 Msa1457920:intron 40.0%
AGTTGAAGTTGCACTACTCT+AGG - tig0039277:21945-21964 Msa1457920:intron 40.0%
GTTGAAGTTGCACTACTCTA+GGG - tig0039277:21946-21965 Msa1457920:intron 40.0%
ACTCCACTTCGTTCTATCTT+TGG + tig0039277:22048-22067 None:intergenic 40.0%
AAGATAGAACGAAGTGGAGT+AGG - tig0039277:22048-22067 Msa1457920:intron 40.0%
AGTGGGTCCTACTATTATGT+GGG - tig0039277:22238-22257 Msa1457920:intron 40.0%
TCTATCCAACATCTTGACCT+TGG - tig0039277:22434-22453 Msa1457920:intron 40.0%
! TGCTTTTGACAGCGTTTGAT+GGG - tig0039277:22571-22590 Msa1457920:CDS 40.0%
GCGTTTGATGGGAAATATGA+TGG - tig0039277:22582-22601 Msa1457920:intron 40.0%
! ACTGAACCTGGTTTGTAGAT+GGG - tig0039277:22615-22634 Msa1457920:intron 40.0%
GGTGTGGATGCAATTTACTT+TGG - tig0039277:22737-22756 Msa1457920:intron 40.0%
GTGGATGCAATTTACTTTGG+AGG - tig0039277:22740-22759 Msa1457920:intron 40.0%
! ATGTATTTTCAGCAGGGATG+TGG - tig0039277:22835-22854 Msa1457920:intron 40.0%
GAAAACCCCCCTATTGAAAA+AGG + tig0039277:21115-21134 None:intergenic 40.0%
!!! GATTCAACCTACTTTTTCGG+TGG + tig0039277:21263-21282 None:intergenic 40.0%
TGTCTGTGTAGGTGCATTAT+AGG + tig0039277:21340-21359 None:intergenic 40.0%
!! TCGACATGTCAGTGTTGTTT+CGG + tig0039277:21363-21382 None:intergenic 40.0%
!! ACTGTTTCAGGTTGAACTCA+AGG - tig0039277:21584-21603 Msa1457920:intron 40.0%
!! TTTCAGGTTGAACTCAAGGA+GGG - tig0039277:21588-21607 Msa1457920:intron 40.0%
TCATGTGTGAACTGCTCTAA+AGG + tig0039277:21615-21634 None:intergenic 40.0%
AGAGCAGTTCACACATGATA+TGG - tig0039277:21617-21636 Msa1457920:intron 40.0%
! TCCAAAATTCACAGGTGTTG+TGG - tig0039277:21759-21778 Msa1457920:intron 40.0%
! TCCACAACACCTGTGAATTT+TGG + tig0039277:21763-21782 None:intergenic 40.0%
!! TGACTTTGTTGTTTGTGAGG+AGG - tig0039277:21792-21811 Msa1457920:intron 40.0%
!! GACTTTGTTGTTTGTGAGGA+GGG - tig0039277:21793-21812 Msa1457920:intron 40.0%
AGTTGAAGTTGCACTACTCT+AGG - tig0039277:21945-21964 Msa1457920:intron 40.0%
GTTGAAGTTGCACTACTCTA+GGG - tig0039277:21946-21965 Msa1457920:intron 40.0%
ACTCCACTTCGTTCTATCTT+TGG + tig0039277:22048-22067 None:intergenic 40.0%
AAGATAGAACGAAGTGGAGT+AGG - tig0039277:22048-22067 Msa1457920:intron 40.0%
AGTGGGTCCTACTATTATGT+GGG - tig0039277:22238-22257 Msa1457920:intron 40.0%
TCTATCCAACATCTTGACCT+TGG - tig0039277:22434-22453 Msa1457920:intron 40.0%
! TGCTTTTGACAGCGTTTGAT+GGG - tig0039277:22571-22590 Msa1457920:CDS 40.0%
GCGTTTGATGGGAAATATGA+TGG - tig0039277:22582-22601 Msa1457920:intron 40.0%
! ACTGAACCTGGTTTGTAGAT+GGG - tig0039277:22615-22634 Msa1457920:intron 40.0%
GGTGTGGATGCAATTTACTT+TGG - tig0039277:22737-22756 Msa1457920:intron 40.0%
GTGGATGCAATTTACTTTGG+AGG - tig0039277:22740-22759 Msa1457920:intron 40.0%
! ATGTATTTTCAGCAGGGATG+TGG - tig0039277:22835-22854 Msa1457920:intron 40.0%
AGCATTGCCACCGAAAAAGT+AGG - tig0039277:21253-21272 Msa1457920:intron 45.0%
!! TGTTGTTTCGGTGTCTGTGT+AGG + tig0039277:21351-21370 None:intergenic 45.0%
GAGCAACTACAGGATATGTC+AGG + tig0039277:21508-21527 None:intergenic 45.0%
!! GTTTCAGGTTGAACTCAAGG+AGG - tig0039277:21587-21606 Msa1457920:intron 45.0%
! ACCTGAAGCATCTCGTATAC+TGG - tig0039277:21828-21847 Msa1457920:intron 45.0%
ACCAGTATACGAGATGCTTC+AGG + tig0039277:21832-21851 None:intergenic 45.0%
TAGCACAGAGCAGAGGATTT+GGG + tig0039277:21870-21889 None:intergenic 45.0%
ATAGCACAGAGCAGAGGATT+TGG + tig0039277:21871-21890 None:intergenic 45.0%
! TGTGCTGGCGAACATAAATG+TGG - tig0039277:21890-21909 Msa1457920:intron 45.0%
AGGCCAAAGATAGAACGAAG+TGG - tig0039277:22042-22061 Msa1457920:intron 45.0%
TTTGGGTGGGTAGTGCAATT+TGG - tig0039277:22190-22209 Msa1457920:CDS 45.0%
CAGTGGGTCCTACTATTATG+TGG - tig0039277:22237-22256 Msa1457920:intron 45.0%
ATGGAGAGGATCTTAACTCG+TGG - tig0039277:22347-22366 Msa1457920:intron 45.0%
TGGAGAGGATCTTAACTCGT+GGG - tig0039277:22348-22367 Msa1457920:intron 45.0%
!! CTGCTTTTGACAGCGTTTGA+TGG - tig0039277:22570-22589 Msa1457920:CDS 45.0%
! GACTGAACCTGGTTTGTAGA+TGG - tig0039277:22614-22633 Msa1457920:intron 45.0%
! CTGAACCTGGTTTGTAGATG+GGG - tig0039277:22616-22635 Msa1457920:intron 45.0%
CATTCAACATCTGAATCGCC+AGG + tig0039277:22676-22695 None:intergenic 45.0%
AGCATTGCCACCGAAAAAGT+AGG - tig0039277:21253-21272 Msa1457920:intron 45.0%
!! TGTTGTTTCGGTGTCTGTGT+AGG + tig0039277:21351-21370 None:intergenic 45.0%
GAGCAACTACAGGATATGTC+AGG + tig0039277:21508-21527 None:intergenic 45.0%
!! GTTTCAGGTTGAACTCAAGG+AGG - tig0039277:21587-21606 Msa1457920:intron 45.0%
! ACCTGAAGCATCTCGTATAC+TGG - tig0039277:21828-21847 Msa1457920:intron 45.0%
ACCAGTATACGAGATGCTTC+AGG + tig0039277:21832-21851 None:intergenic 45.0%
TAGCACAGAGCAGAGGATTT+GGG + tig0039277:21870-21889 None:intergenic 45.0%
ATAGCACAGAGCAGAGGATT+TGG + tig0039277:21871-21890 None:intergenic 45.0%
! TGTGCTGGCGAACATAAATG+TGG - tig0039277:21890-21909 Msa1457920:intron 45.0%
AGGCCAAAGATAGAACGAAG+TGG - tig0039277:22042-22061 Msa1457920:intron 45.0%
TTTGGGTGGGTAGTGCAATT+TGG - tig0039277:22190-22209 Msa1457920:CDS 45.0%
CAGTGGGTCCTACTATTATG+TGG - tig0039277:22237-22256 Msa1457920:intron 45.0%
ATGGAGAGGATCTTAACTCG+TGG - tig0039277:22347-22366 Msa1457920:intron 45.0%
TGGAGAGGATCTTAACTCGT+GGG - tig0039277:22348-22367 Msa1457920:intron 45.0%
!! CTGCTTTTGACAGCGTTTGA+TGG - tig0039277:22570-22589 Msa1457920:CDS 45.0%
! GACTGAACCTGGTTTGTAGA+TGG - tig0039277:22614-22633 Msa1457920:intron 45.0%
! CTGAACCTGGTTTGTAGATG+GGG - tig0039277:22616-22635 Msa1457920:intron 45.0%
CATTCAACATCTGAATCGCC+AGG + tig0039277:22676-22695 None:intergenic 45.0%
GGATGCGACTTTGCAAGAAC+AGG - tig0039277:21229-21248 Msa1457920:intron 50.0%
CAACACTGACATGTCGACAC+CGG - tig0039277:21366-21385 Msa1457920:intron 50.0%
CCAGATGCATGAGCAACTAC+AGG + tig0039277:21518-21537 None:intergenic 50.0%
CCTGTAGTTGCTCATGCATC+TGG - tig0039277:21515-21534 Msa1457920:intron 50.0%
! GAACCTTTTCTCCGGAAGCA+AGG - tig0039277:21639-21658 Msa1457920:intron 50.0%
ATGCCTTGCTTCCGGAGAAA+AGG + tig0039277:21645-21664 None:intergenic 50.0%
CGAGATGCTTCAGGTGACAA+AGG + tig0039277:21823-21842 None:intergenic 50.0%
TGGTCGAATAACCCATAGGC+AGG + tig0039277:22002-22021 None:intergenic 50.0%
GGTGGGACCCACATAATAGT+AGG + tig0039277:22248-22267 None:intergenic 50.0%
GGAGAGGATCTTAACTCGTG+GGG - tig0039277:22349-22368 Msa1457920:intron 50.0%
GAGAGGATCTTAACTCGTGG+GGG - tig0039277:22350-22369 Msa1457920:intron 50.0%
CAGAACCCCATCTACAAACC+AGG + tig0039277:22624-22643 None:intergenic 50.0%
GGTTTGTAGATGGGGTTCTG+AGG - tig0039277:22624-22643 Msa1457920:intron 50.0%
! GAACTCTACATTGATGGGCC+TGG - tig0039277:22655-22674 Msa1457920:intron 50.0%
TTCCAGCATCTCCACGCAAT+AGG + tig0039277:20843-20862 None:intergenic 50.0%
GGATGCGACTTTGCAAGAAC+AGG - tig0039277:21229-21248 Msa1457920:intron 50.0%
CAACACTGACATGTCGACAC+CGG - tig0039277:21366-21385 Msa1457920:intron 50.0%
CCAGATGCATGAGCAACTAC+AGG + tig0039277:21518-21537 None:intergenic 50.0%
CCTGTAGTTGCTCATGCATC+TGG - tig0039277:21515-21534 Msa1457920:intron 50.0%
! GAACCTTTTCTCCGGAAGCA+AGG - tig0039277:21639-21658 Msa1457920:intron 50.0%
ATGCCTTGCTTCCGGAGAAA+AGG + tig0039277:21645-21664 None:intergenic 50.0%
CGAGATGCTTCAGGTGACAA+AGG + tig0039277:21823-21842 None:intergenic 50.0%
TGGTCGAATAACCCATAGGC+AGG + tig0039277:22002-22021 None:intergenic 50.0%
GGTGGGACCCACATAATAGT+AGG + tig0039277:22248-22267 None:intergenic 50.0%
GGAGAGGATCTTAACTCGTG+GGG - tig0039277:22349-22368 Msa1457920:intron 50.0%
GAGAGGATCTTAACTCGTGG+GGG - tig0039277:22350-22369 Msa1457920:intron 50.0%
CAGAACCCCATCTACAAACC+AGG + tig0039277:22624-22643 None:intergenic 50.0%
GGTTTGTAGATGGGGTTCTG+AGG - tig0039277:22624-22643 Msa1457920:intron 50.0%
! GAACTCTACATTGATGGGCC+TGG - tig0039277:22655-22674 Msa1457920:intron 50.0%
GAACAGGCATGCCTTGCTTC+CGG + tig0039277:21653-21672 None:intergenic 55.0%
GGAAGCAAGGCATGCCTGTT+CGG - tig0039277:21652-21671 Msa1457920:intron 55.0%
CAGCACATAGCACAGAGCAG+AGG + tig0039277:21877-21896 None:intergenic 55.0%
CTCTGCTCTGTGCTATGTGC+TGG - tig0039277:21875-21894 Msa1457920:intron 55.0%
GGCTACGTTTCGACTGAACC+TGG - tig0039277:22603-22622 Msa1457920:intron 55.0%
! CAGCAGGGATGTGGCTTGTA+TGG - tig0039277:22844-22863 Msa1457920:intron 55.0%
GAACAGGCATGCCTTGCTTC+CGG + tig0039277:21653-21672 None:intergenic 55.0%
GGAAGCAAGGCATGCCTGTT+CGG - tig0039277:21652-21671 Msa1457920:intron 55.0%
CAGCACATAGCACAGAGCAG+AGG + tig0039277:21877-21896 None:intergenic 55.0%
CTCTGCTCTGTGCTATGTGC+TGG - tig0039277:21875-21894 Msa1457920:intron 55.0%
GGCTACGTTTCGACTGAACC+TGG - tig0039277:22603-22622 Msa1457920:intron 55.0%
! CAGCAGGGATGTGGCTTGTA+TGG - tig0039277:22844-22863 Msa1457920:intron 55.0%
Chromosome Type Strat End Strand Name
tig0039277 gene 20841 22967 20841 ID=Msa1457920;Name=Msa1457920
tig0039277 mRNA 20841 22967 20841 ID=Msa1457920-mRNA-1;Parent=Msa1457920;Name=Msa1457920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.75|0.6|0.8|1|1|5|271|133
tig0039277 exon 20841 21225 20841 ID=Msa1457920-mRNA-1:exon:21465;Parent=Msa1457920-mRNA-1
tig0039277 exon 21959 22035 21959 ID=Msa1457920-mRNA-1:exon:21464;Parent=Msa1457920-mRNA-1
tig0039277 exon 22124 22214 22124 ID=Msa1457920-mRNA-1:exon:21463;Parent=Msa1457920-mRNA-1
tig0039277 exon 22538 22598 22538 ID=Msa1457920-mRNA-1:exon:21462;Parent=Msa1457920-mRNA-1
tig0039277 exon 22909 22967 22909 ID=Msa1457920-mRNA-1:exon:21461;Parent=Msa1457920-mRNA-1
tig0039277 CDS 22909 22967 22909 ID=Msa1457920-mRNA-1:cds;Parent=Msa1457920-mRNA-1
tig0039277 CDS 22538 22598 22538 ID=Msa1457920-mRNA-1:cds;Parent=Msa1457920-mRNA-1
tig0039277 CDS 22124 22214 22124 ID=Msa1457920-mRNA-1:cds;Parent=Msa1457920-mRNA-1
tig0039277 CDS 21959 22035 21959 ID=Msa1457920-mRNA-1:cds;Parent=Msa1457920-mRNA-1
tig0039277 CDS 21112 21225 21112 ID=Msa1457920-mRNA-1:cds;Parent=Msa1457920-mRNA-1
tig0039277 three_prime_UTR 20841 21111 20841 ID=Msa1457920-mRNA-1:three_prime_utr;Parent=Msa1457920-mRNA-1
Gene Sequence

>Msa1457920

CTATTGCGTGGAGATGCTGGAATGATTTTTACGAATTTGTCTAAAGAAGAAGTTGAAAGGCTGTTTAATGAATTTGAGGGATGCGACTTTGCAAGAACAGGAAGCATTGCCACCGAAAAAGTTGAACTCAAGGAGGGTCCTTTAGAGCAGTTCACACATGATATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGTGTTGTGGAGCTTGTTTCTGACTTTGTTGTTTGTGAGGAGGGAAAGCCTTTGTCACCTGAAGCATCTCGTATACTGCGTTTGATGGGAAATATGATGGCTACGTTTCGACTGAACCTGGTTTGTAGATGGGGTTCTGAGGATGATTTTGAACTCTACATTGATGGGCCTGGCGATTCAGATGTTGAATGA

Protein sequence

>Msa1457920

LLRGDAGMIFTNLSKEEVERLFNEFEGCDFARTGSIATEKVELKEGPLEQFTHDMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLMGNMMATFRLNLVCRWGSEDDFELYIDGPGDSDVE*