AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0183710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183710 MtrunA17_Chr1g0210771 95.288 382 14 1 1 378 1 382 0.0 765
Msa0183710 MtrunA17_Chr1g0171171 73.615 379 95 3 1 378 1 375 0.0 603
Msa0183710 MtrunA17_Chr3g0105301 42.216 334 175 5 55 374 43 372 8.30e-99 298
Msa0183710 MtrunA17_Chr5g0430371 40.233 343 181 5 53 374 56 395 2.20e-98 298
Msa0183710 MtrunA17_Chr2g0283581 42.598 331 169 6 55 378 42 358 5.02e-96 290
Msa0183710 MtrunA17_Chr4g0006991 42.075 347 177 8 53 378 84 427 1.78e-92 283
Msa0183710 MtrunA17_Chr2g0325481 39.759 332 179 6 54 378 49 366 4.00e-92 281
Msa0183710 MtrunA17_Chr3g0097891 42.216 334 169 7 55 378 31 350 4.71e-92 280
Msa0183710 MtrunA17_Chr7g0258851 39.211 380 207 8 19 378 212 587 4.01e-90 283
Msa0183710 MtrunA17_Chr2g0314791 42.687 335 167 8 53 378 27 345 2.97e-89 273
Msa0183710 MtrunA17_Chr1g0175671 41.499 347 183 7 50 378 165 509 1.19e-88 277
Msa0183710 MtrunA17_Chr2g0314801 39.640 333 180 6 51 374 29 349 5.79e-88 270
Msa0183710 MtrunA17_Chr5g0413851 37.534 373 208 8 14 378 4 359 1.48e-86 266
Msa0183710 MtrunA17_Chr5g0413271 37.265 373 217 9 15 378 112 476 2.16e-85 267
Msa0183710 MtrunA17_Chr4g0041011 38.024 334 180 8 55 378 47 363 2.66e-85 263
Msa0183710 MtrunA17_Chr7g0242701 40.058 347 184 8 53 378 84 427 8.63e-85 264
Msa0183710 MtrunA17_Chr7g0269991 36.716 335 189 5 55 374 137 463 1.85e-84 264
Msa0183710 MtrunA17_Chr1g0213281 37.662 385 215 8 17 378 133 515 2.42e-84 266
Msa0183710 MtrunA17_Chr8g0360521 39.884 346 179 10 55 378 71 409 5.31e-83 259
Msa0183710 MtrunA17_Chr3g0113671 40.517 348 171 10 55 374 106 445 9.48e-83 259
Msa0183710 MtrunA17_Chr4g0045951 37.500 376 205 10 12 378 8 362 9.50e-83 256
Msa0183710 MtrunA17_Chr4g0045941 36.047 344 200 6 42 378 20 350 1.93e-82 255
Msa0183710 MtrunA17_Chr4g0005491 35.550 391 222 11 10 378 25 407 5.40e-82 256
Msa0183710 MtrunA17_Chr4g0071391 34.896 384 220 8 21 378 67 446 5.10e-81 255
Msa0183710 MtrunA17_Chr3g0085081 35.493 355 206 7 30 376 7 346 4.28e-80 249
Msa0183710 MtrunA17_Chr5g0437291 40.227 353 172 11 53 374 163 507 8.52e-80 253
Msa0183710 MtrunA17_Chr3g0091031 35.493 355 206 7 30 376 7 346 4.13e-79 246
Msa0183710 MtrunA17_Chr3g0114101 35.969 392 222 10 14 378 41 430 2.84e-78 247
Msa0183710 MtrunA17_Chr4g0068111 36.413 368 209 8 31 378 91 453 1.08e-77 246
Msa0183710 MtrunA17_Chr3g0085071 34.758 351 196 7 34 376 36 361 1.25e-76 241
Msa0183710 MtrunA17_Chr5g0437601 38.261 345 189 9 55 378 83 424 1.67e-76 242
Msa0183710 MtrunA17_Chr7g0243301 35.159 347 203 9 54 378 63 409 2.84e-74 236
Msa0183710 MtrunA17_Chr4g0005481 35.530 349 206 7 47 378 100 446 3.00e-73 234
Msa0183710 MtrunA17_Chr8g0368461 34.758 351 200 8 52 374 175 524 5.52e-73 236
Msa0183710 MtrunA17_Chr7g0259711 35.260 346 198 8 55 378 91 432 4.19e-67 219
Msa0183710 MtrunA17_Chr2g0287901 34.232 371 206 9 32 376 77 435 8.44e-67 218
Msa0183710 MtrunA17_Chr3g0126021 35.372 376 205 9 25 378 100 459 3.57e-63 209
Msa0183710 MtrunA17_Chr8g0384151 33.431 341 200 6 53 378 88 416 2.62e-61 203
Msa0183710 MtrunA17_Chr1g0209921 40.260 231 128 7 53 278 42 267 2.59e-57 188
Msa0183710 MtrunA17_Chr1g0178081 30.075 399 200 12 1 378 1 341 2.12e-51 175
Msa0183710 MtrunA17_Chr6g0476041 29.459 370 215 12 40 374 152 510 2.03e-44 160
Msa0183710 MtrunA17_Chr1g0188191 30.110 362 193 15 55 374 234 577 2.64e-40 150
Msa0183710 MtrunA17_Chr8g0347321 28.831 385 226 16 30 378 67 439 2.04e-38 142
Msa0183710 MtrunA17_Chr8g0384421 28.732 355 207 15 53 376 131 470 2.29e-36 137
Msa0183710 MtrunA17_Chr7g0226991 28.611 360 203 13 53 374 55 398 7.72e-36 135
Msa0183710 MtrunA17_Chr8g0387921 27.020 396 246 14 11 374 31 415 1.11e-34 132
Msa0183710 MtrunA17_Chr5g0414061 27.322 366 213 13 46 374 85 434 1.16e-34 132
Msa0183710 MtrunA17_Chr3g0140371 28.169 355 204 13 55 374 18 356 9.48e-34 129
Msa0183710 MtrunA17_Chr4g0049421 27.557 352 214 11 55 375 48 389 9.69e-34 129
Msa0183710 MtrunA17_Chr8g0391481 28.134 359 206 15 53 374 25 368 2.79e-33 127
Msa0183710 MtrunA17_Chr6g0451321 27.901 362 207 15 53 378 114 457 6.12e-33 128
Msa0183710 MtrunA17_Chr6g0456691 25.735 408 254 12 7 374 17 415 1.29e-32 127
Msa0183710 MtrunA17_Chr5g0414091 26.776 366 209 13 50 374 80 427 3.70e-32 125
Msa0183710 MtrunA17_Chr2g0283851 29.050 358 192 14 59 374 59 396 4.15e-32 125
Msa0183710 MtrunA17_Chr5g0414051 27.731 357 206 14 55 374 75 416 6.03e-31 122
Msa0183710 MtrunA17_Chr5g0414041 29.494 356 202 13 55 374 87 429 1.24e-30 121
Msa0183710 MtrunA17_Chr4g0070341 27.371 369 216 16 45 376 116 469 1.76e-30 121
Msa0183710 MtrunA17_Chr6g0456681 27.042 355 214 10 53 374 62 404 2.88e-29 117
Msa0183710 MtrunA17_Chr6g0455901 27.007 411 236 16 8 374 22 412 4.16e-26 108
Msa0183710 MtrunA17_Chr7g0221271 38.931 131 79 1 51 180 75 205 2.21e-24 99.4
Msa0183710 MtrunA17_Chr7g0221291 46.875 96 50 1 51 145 75 170 1.11e-23 96.7
Msa0183710 MtrunA17_Chr3g0085101 34.579 107 63 2 240 339 1 107 6.36e-17 76.3
Msa0183710 MtrunA17_Chr2g0287931 35.593 118 64 3 115 220 3 120 1.19e-15 72.8
Msa0183710 MtrunA17_Chr1g0209931 49.367 79 27 3 301 378 26 92 4.00e-14 67.8
Msa0183710 MtrunA17_Chr5g0429211 36.000 75 48 0 108 182 194 268 1.29e-11 64.7
Msa0183710 MtrunA17_Chr5g0429191 52.174 46 20 1 326 371 2 45 3.20e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0183710 AT3G54260.1 61.741 379 131 6 2 376 4 372 3.96e-173 488
Msa0183710 AT5G58600.1 40.533 338 184 6 55 378 66 400 4.34e-93 285
Msa0183710 AT2G31110.2 38.736 364 197 7 21 374 11 358 3.13e-92 281
Msa0183710 AT1G29050.1 41.390 331 174 5 55 378 61 378 5.35e-92 281
Msa0183710 AT2G34070.1 40.118 339 180 7 49 378 59 383 6.18e-90 276
Msa0183710 AT2G30900.1 40.841 333 174 8 53 374 41 361 2.22e-89 274
Msa0183710 AT5G01360.2 38.329 347 191 8 53 378 34 378 6.47e-86 265
Msa0183710 AT3G62390.1 38.872 337 186 6 53 374 136 467 6.87e-86 268
Msa0183710 AT5G06700.1 38.251 366 201 7 37 378 230 594 1.72e-85 271
Msa0183710 AT5G01360.1 38.329 347 191 8 53 378 90 434 2.89e-85 266
Msa0183710 AT2G30010.1 39.769 347 180 8 55 378 56 396 9.93e-85 263
Msa0183710 AT2G30010.2 39.769 347 180 8 55 378 99 439 1.75e-84 264
Msa0183710 AT2G42570.1 38.507 335 180 7 54 378 46 364 1.25e-83 259
Msa0183710 AT1G73140.1 39.017 346 186 8 53 378 65 405 1.30e-83 261
Msa0183710 AT1G78710.1 38.298 329 182 7 54 374 37 352 2.57e-83 258
Msa0183710 AT3G12060.1 39.368 348 189 8 50 378 191 535 2.74e-83 264
Msa0183710 AT3G55990.1 37.669 369 200 9 28 374 119 479 9.68e-82 258
Msa0183710 AT2G40150.1 38.636 352 180 9 54 374 70 416 4.30e-81 254
Msa0183710 AT5G20590.1 38.663 344 190 8 53 378 139 479 6.96e-81 256
Msa0183710 AT5G49340.1 37.571 354 199 8 45 378 90 441 6.50e-80 253
Msa0183710 AT1G60790.1 36.705 346 198 9 49 374 184 528 9.26e-80 254
Msa0183710 AT3G14850.2 37.576 330 183 7 55 374 34 350 2.37e-79 248
Msa0183710 AT5G01620.2 37.391 345 194 8 53 378 108 449 3.31e-79 250
Msa0183710 AT5G01620.1 37.391 345 194 8 53 378 108 449 3.31e-79 250
Msa0183710 AT5G01620.3 37.391 345 194 8 53 378 116 457 4.63e-79 250
Msa0183710 AT2G40160.2 37.176 347 195 9 55 378 77 423 5.73e-78 247
Msa0183710 AT2G40160.1 36.888 347 196 9 55 378 77 423 6.76e-78 246
Msa0183710 AT3G11030.1 37.609 343 195 7 55 378 106 448 1.93e-76 243
Msa0183710 AT2G38320.1 32.412 398 242 10 3 378 12 404 4.48e-75 238
Msa0183710 AT2G40320.1 34.343 396 235 9 8 378 27 422 6.22e-74 236
Msa0183710 AT1G48880.1 35.057 348 181 8 54 378 114 439 3.82e-67 219
Msa0183710 AT5G19160.1 34.400 375 208 9 33 376 75 442 6.05e-67 219
Msa0183710 AT2G31110.3 38.583 254 153 3 20 272 10 261 1.76e-66 212
Msa0183710 AT3G06080.2 35.311 354 194 9 50 376 98 443 3.30e-65 214
Msa0183710 AT5G58600.2 41.410 227 130 3 55 279 66 291 3.69e-65 209
Msa0183710 AT2G38320.2 33.956 321 192 7 78 378 1 321 4.28e-65 210
Msa0183710 AT3G62390.2 41.176 238 129 3 53 279 136 373 4.43e-65 213
Msa0183710 AT2G30900.2 42.609 230 127 5 53 279 41 268 1.71e-64 207
Msa0183710 AT2G34070.2 39.163 263 138 6 124 378 1 249 1.21e-62 201
Msa0183710 AT5G06230.2 34.561 353 197 8 53 378 19 364 2.05e-62 204
Msa0183710 AT5G06230.1 34.561 353 197 8 53 378 60 405 3.95e-62 205
Msa0183710 AT3G11570.1 32.071 396 230 11 8 378 38 419 7.70e-61 202
Msa0183710 AT2G40160.3 39.407 236 132 6 55 279 77 312 1.21e-56 188
Msa0183710 AT1G78710.2 31.549 355 176 10 30 378 3 296 1.26e-55 185
Msa0183710 AT5G20590.2 38.750 240 134 5 53 279 139 378 7.34e-54 182
Msa0183710 AT5G19160.2 37.037 243 140 4 50 279 94 336 1.80e-50 173
Msa0183710 AT3G14850.1 35.385 260 146 6 124 374 1 247 3.50e-50 169
Msa0183710 AT2G31110.1 40.367 218 105 6 166 374 9 210 7.78e-49 164
Msa0183710 AT3G06080.1 35.802 243 143 4 50 279 98 340 1.21e-48 168
Msa0183710 AT5G06230.3 34.959 246 141 4 53 279 60 305 1.32e-45 159
Msa0183710 AT1G70230.1 30.447 358 190 14 55 378 79 411 1.79e-40 148
Msa0183710 AT4G25360.1 29.096 354 211 12 54 374 174 520 4.97e-39 146
Msa0183710 AT4G25360.2 29.096 354 211 12 54 374 174 520 4.97e-39 146
Msa0183710 AT5G51640.1 29.178 377 222 13 31 374 120 484 5.45e-39 145
Msa0183710 AT1G01430.1 26.216 370 237 12 35 374 80 443 4.17e-38 142
Msa0183710 AT4G01080.1 28.693 352 211 12 51 374 87 426 3.52e-37 139
Msa0183710 AT5G64020.1 27.324 355 220 15 55 376 57 406 1.17e-36 137
Msa0183710 AT5G20680.6 28.205 390 221 16 26 378 90 457 2.19e-34 132
Msa0183710 AT3G28150.1 28.713 404 215 18 12 376 39 408 2.95e-34 131
Msa0183710 AT5G20680.4 28.205 390 221 16 26 378 184 551 5.36e-34 132
Msa0183710 AT5G20680.1 28.205 390 221 16 26 378 184 551 5.36e-34 132
Msa0183710 AT5G20680.3 28.205 390 221 16 26 378 184 551 5.36e-34 132
Msa0183710 AT5G20680.5 28.205 390 221 16 26 378 184 551 5.36e-34 132
Msa0183710 AT5G20680.2 28.205 390 221 16 26 378 166 533 5.49e-34 132
Msa0183710 AT5G15890.1 27.841 352 214 10 49 374 181 518 1.65e-33 130
Msa0183710 AT2G37720.1 27.841 352 218 15 53 378 141 482 2.65e-33 129
Msa0183710 AT5G15900.1 31.378 392 202 16 26 378 46 409 2.81e-33 129
Msa0183710 AT5G15900.2 30.280 393 205 17 26 378 65 428 3.56e-33 129
Msa0183710 AT4G11090.1 28.019 414 245 18 1 374 21 421 6.62e-32 125
Msa0183710 AT5G64470.3 26.225 347 220 10 55 375 55 391 1.06e-31 124
Msa0183710 AT5G64470.2 26.062 353 219 11 55 375 55 397 6.79e-31 122
Msa0183710 AT2G14530.1 26.741 359 214 10 55 378 62 406 8.31e-31 122
Msa0183710 AT4G23790.1 27.424 361 209 14 53 374 77 423 2.78e-30 120
Msa0183710 AT3G02440.2 28.286 350 209 11 55 374 135 472 2.54e-29 119
Msa0183710 AT3G02440.1 28.286 350 209 11 55 374 127 464 2.75e-29 118
Msa0183710 AT5G64470.4 26.423 246 162 7 55 283 55 298 3.33e-21 93.6
Msa0183710 AT5G64470.1 26.423 246 162 7 55 283 55 298 3.56e-21 93.6

Find 97 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTGGTGTGCCTGATATT+TGG 0.189016 1_4:+72691890 Msa0183710:CDS
GTGATTTCTCAGTTGGAAAA+TGG 0.208372 1_4:+72690470 Msa0183710:CDS
AGACATCAATTGAGTTCTTC+TGG 0.226253 1_4:+72691110 Msa0183710:CDS
ATTTCTTCCATGAATCTCTT+TGG 0.226552 1_4:-72690447 None:intergenic
GCTCATTGGTGGACTCATTC+TGG 0.278727 1_4:+72691250 Msa0183710:CDS
TGATTAAATTGTAGGCAAAA+TGG 0.281278 1_4:+72691625 Msa0183710:intron
AAAGTGGGTGGATTTGAATT+TGG 0.291594 1_4:+72691473 Msa0183710:CDS
TTTCTTCCATGAATCTCTTT+GGG 0.298282 1_4:-72690446 None:intergenic
AGCATTTCGTTCCAAATATC+AGG 0.327867 1_4:-72691901 None:intergenic
TTCAGCCACATGCATGTTCC+AGG 0.356693 1_4:+72691685 Msa0183710:CDS
GTAATATCCTGTAGATATAC+TGG 0.367331 1_4:-72691751 None:intergenic
GGACCAGTAGTAGTGCTAAA+AGG 0.371991 1_4:+72691706 Msa0183710:CDS
TAATAAGAGAATTCTACATT+TGG 0.381121 1_4:+72691168 Msa0183710:CDS
TTGAAGAGAATGCAAGGTAT+TGG 0.381566 1_4:+72691197 Msa0183710:CDS
ATAGCATGGAAAGACATTAA+AGG 0.392314 1_4:-72691002 None:intergenic
TTCTTCCAATGCAAGCCAAC+TGG 0.394214 1_4:-72690398 None:intergenic
TGCAGCCATTGGTGCCTCCC+TGG 0.399442 1_4:+72691874 Msa0183710:CDS
TTTAATGTCTTTCCATGCTA+TGG 0.404785 1_4:+72691004 Msa0183710:CDS
TTGCATTTGATTCAGCTCAT+TGG 0.406976 1_4:+72691236 Msa0183710:CDS
TATTCCAACTGACAGGAAAA+AGG 0.407152 1_4:+72690965 Msa0183710:CDS
TTCTTCAGTTCTACCAATAG+TGG 0.407885 1_4:-72691136 None:intergenic
TGTATTGAGTCCTTTCTCAT+AGG 0.414458 1_4:-72691445 None:intergenic
GTTCTTCTGGGCACCACTAT+TGG 0.416633 1_4:+72691123 Msa0183710:CDS
CATTTGATTCAGCTCATTGG+TGG 0.419213 1_4:+72691239 Msa0183710:CDS
GACATCAATTGAGTTCTTCT+GGG 0.424420 1_4:+72691111 Msa0183710:CDS
AGCCAACTGGACACTTCCTC+TGG 0.424797 1_4:-72690385 None:intergenic
AAGAAATGTGATTTCTCAGT+TGG 0.430768 1_4:+72690463 Msa0183710:CDS
TTTGATGCACTGAAGTATCT+TGG 0.440296 1_4:+72690855 Msa0183710:CDS
AAATGGAAGTGGAAGCCATT+AGG 0.444002 1_4:+72690592 Msa0183710:CDS
AGACATTAAAGGACCATCAT+AGG 0.444756 1_4:-72690991 None:intergenic
CATTTCTCATAATCTGAATC+CGG 0.445205 1_4:-72690574 None:intergenic
CTTGGGATGGAACAACCTAA+TGG 0.446475 1_4:-72690607 None:intergenic
AGTCCTCTGATTGCAGCCAT+TGG 0.458504 1_4:+72691863 Msa0183710:CDS
CGGATTCAGATTATGAGAAA+TGG 0.459664 1_4:+72690575 Msa0183710:CDS
TTCTATAATGAGAAACCAAT+GGG 0.459846 1_4:+72690914 Msa0183710:CDS
GTATGGCACCTAGACATAAC+AGG 0.470822 1_4:+72691526 Msa0183710:CDS
AGTGTCCAGTTGGCTTGCAT+TGG 0.472840 1_4:+72690393 Msa0183710:CDS
TTCCAAATATCAGGCACACC+AGG 0.474779 1_4:-72691892 None:intergenic
TGCAAACCCAAAGAGATTCA+TGG 0.480389 1_4:+72690440 Msa0183710:CDS
TCTCTTGTATGCTTAGTTCA+AGG 0.493508 1_4:+72690939 Msa0183710:CDS
CATCACAAACATGAATCAAA+TGG 0.494804 1_4:+72691419 Msa0183710:CDS
CAAATGGTTGCCTATGAGAA+AGG 0.503172 1_4:+72691435 Msa0183710:CDS
GAGATTTCCAGTATATCTAC+AGG 0.504762 1_4:+72691744 Msa0183710:CDS
GCAGTAACTTGTCAAAAGAA+TGG 0.505516 1_4:+72690547 Msa0183710:CDS
GTTGGAAATGTTACAATCAA+AGG 0.507595 1_4:+72691647 Msa0183710:CDS
TAAATTGTAGGCAAAATGGT+TGG 0.508760 1_4:+72691629 Msa0183710:intron
ATGAGAAAGGACTCAATACA+TGG 0.509591 1_4:+72691448 Msa0183710:CDS
TTTAGCACTACTACTGGTCC+TGG 0.509768 1_4:-72691703 None:intergenic
TATTGGTAGAACTGAAGAAA+GGG 0.514662 1_4:+72691140 Msa0183710:CDS
AAGGAGTTATTCCAACTGAC+AGG 0.516555 1_4:+72690958 Msa0183710:CDS
TACCAGGTGGGATTATTACA+TGG 0.524110 1_4:+72691383 Msa0183710:intron
GCACACCAGGGAGGCACCAA+TGG 0.532334 1_4:-72691879 None:intergenic
CATCGTGTATGTGGATAAGA+AGG 0.533976 1_4:-72692095 None:intergenic
GTTACTGCAGTGGCGAGATA+AGG 0.535012 1_4:-72690532 None:intergenic
CAGATTATGAGAAATGGAAG+TGG 0.537613 1_4:+72690581 Msa0183710:CDS
CTATTGGTAGAACTGAAGAA+AGG 0.537856 1_4:+72691139 Msa0183710:CDS
ACATCCTTCAGTGTATAGTA+AGG 0.542161 1_4:+72691801 Msa0183710:CDS
AGCATACAAGAGATTCCCAT+TGG 0.544133 1_4:-72690929 None:intergenic
GACTCAATACATGGGCAAAG+TGG 0.544827 1_4:+72691457 Msa0183710:CDS
ATGACTGCATTTAGAAGAGA+TGG 0.549263 1_4:+72691778 Msa0183710:CDS
GAGAGGCAGAAACAAGGTAA+TGG 0.549704 1_4:+72691838 Msa0183710:CDS
ATTCTATAATGAGAAACCAA+TGG 0.552968 1_4:+72690913 Msa0183710:CDS
ATTAATATCCTACCATAGCA+TGG 0.553143 1_4:-72691016 None:intergenic
CATTAGGTTGTTCCATCCCA+AGG 0.558505 1_4:+72690608 Msa0183710:CDS
AGGTAATAAGTGAAGAAGAG+AGG 0.559968 1_4:+72691821 Msa0183710:CDS
GACAGTTGGAATCATAGAGA+GGG 0.562013 1_4:-72690510 None:intergenic
AGTACGTACCTGTTATGTCT+AGG 0.567486 1_4:-72691534 None:intergenic
GCACCAATGGCTGCAATCAG+AGG 0.571338 1_4:-72691866 None:intergenic
GTTTCATCATCACCTTGGGA+TGG 0.572029 1_4:-72690620 None:intergenic
TTGTCAAAAGAATGGACGGC+CGG 0.574038 1_4:+72690555 Msa0183710:CDS
GGAAAGAGAATGATGTTGGT+GGG 0.575995 1_4:+72690888 Msa0183710:CDS
ACTCAATACATGGGCAAAGT+GGG 0.582566 1_4:+72691458 Msa0183710:CDS
GAGAGGAAAGAGAATGATGT+TGG 0.587409 1_4:+72690884 Msa0183710:CDS
AATGGCTGCAATCAGAGGAC+TGG 0.587580 1_4:-72691861 None:intergenic
GAGAATGCAAGGTATTGGAA+AGG 0.589108 1_4:+72691202 Msa0183710:CDS
ATGTGGATAAGAAGGAAGGA+AGG 0.592817 1_4:-72692087 None:intergenic
ATCCAGAGGAAGTGTCCAGT+TGG 0.594248 1_4:+72690383 Msa0183710:CDS
ATTTGATTGAAGAGAATGCA+AGG 0.595081 1_4:+72691191 Msa0183710:CDS
AAGTATCTTGGTAAAATGAG+AGG 0.596417 1_4:+72690867 Msa0183710:CDS
GTGTATGTGGATAAGAAGGA+AGG 0.597039 1_4:-72692091 None:intergenic
AGGTGGGATTATTACATGGA+AGG 0.598017 1_4:+72691387 Msa0183710:intron
CAATACATGGGCAAAGTGGG+TGG 0.598037 1_4:+72691461 Msa0183710:CDS
ATTACCTTACTATACACTGA+AGG 0.598619 1_4:-72691805 None:intergenic
GTTGGAATCATAGAGAGGGT+AGG 0.612157 1_4:-72690506 None:intergenic
TAACTTGTCAAAAGAATGGA+CGG 0.614689 1_4:+72690551 Msa0183710:CDS
GGAACGAAATGCTGAGTGCA+TGG 0.615044 1_4:+72691911 Msa0183710:CDS
GGATTGTAAGATCAGTAAGT+CGG 0.632612 1_4:-72692066 None:intergenic
GAAGAAGAGAGGCAGAAACA+AGG 0.633633 1_4:+72691832 Msa0183710:CDS
GGACAGTTGGAATCATAGAG+AGG 0.634353 1_4:-72690511 None:intergenic
TCCAAATATCAGGCACACCA+GGG 0.635948 1_4:-72691891 None:intergenic
AGTGGCGAGATAAGGACAGT+TGG 0.638580 1_4:-72690524 None:intergenic
AGGAAAGAGAATGATGTTGG+TGG 0.644337 1_4:+72690887 Msa0183710:CDS
AGAAACTGAAGACGTCAACA+TGG 0.659763 1_4:+72690417 Msa0183710:CDS
TGAGAAAGGACTCAATACAT+GGG 0.677756 1_4:+72691449 Msa0183710:CDS
CTGGTCCTGGAACATGCATG+TGG 0.678164 1_4:-72691690 None:intergenic
ATTATCACTGATCAATCCAG+AGG 0.696073 1_4:+72690369 Msa0183710:CDS
AAATATCAGGCACACCAGGG+AGG 0.749580 1_4:-72691888 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATAAAATATTGATGA+AGG - chr1_4:72691574-72691593 None:intergenic 15.0%
!! TTTAACTATAACTAAAAAGA+TGG + chr1_4:72691935-72691954 Msa0183710:exon 15.0%
!! CAAAAATAAAATATTGATGA+AGG - chr1_4:72691574-72691593 None:intergenic 15.0%
!! TTTAACTATAACTAAAAAGA+TGG + chr1_4:72691935-72691954 Msa0183710:exon 15.0%
!! ATAAAAATGACAGTAAATGA+AGG - chr1_4:72690324-72690343 None:intergenic 20.0%
!!! CATTTTTAGAAGGAAAATTA+AGG - chr1_4:72691053-72691072 None:intergenic 20.0%
!!! GTAAGTAAATCATTTTTAGA+AGG - chr1_4:72691063-72691082 None:intergenic 20.0%
!! TAATAAGAGAATTCTACATT+TGG + chr1_4:72691168-72691187 Msa0183710:CDS 20.0%
!!! TAATCATTTTTACATCCTAA+TGG + chr1_4:72691344-72691363 Msa0183710:intron 20.0%
!! AGAACATTTGATTAAATTGT+AGG + chr1_4:72691617-72691636 Msa0183710:intron 20.0%
!! ATAAAAATGACAGTAAATGA+AGG - chr1_4:72690324-72690343 None:intergenic 20.0%
!!! CATTTTTAGAAGGAAAATTA+AGG - chr1_4:72691053-72691072 None:intergenic 20.0%
!!! GTAAGTAAATCATTTTTAGA+AGG - chr1_4:72691063-72691082 None:intergenic 20.0%
!! TAATAAGAGAATTCTACATT+TGG + chr1_4:72691168-72691187 Msa0183710:CDS 20.0%
!!! TAATCATTTTTACATCCTAA+TGG + chr1_4:72691344-72691363 Msa0183710:intron 20.0%
!! AGAACATTTGATTAAATTGT+AGG + chr1_4:72691617-72691636 Msa0183710:intron 20.0%
!!! CTGTCATTTTTATTCTTCTT+AGG + chr1_4:72690331-72690350 Msa0183710:CDS 25.0%
! AAGCATGTAAGAAAACAAAA+AGG - chr1_4:72690670-72690689 None:intergenic 25.0%
! ATTCTATAATGAGAAACCAA+TGG + chr1_4:72690913-72690932 Msa0183710:CDS 25.0%
! TTCTATAATGAGAAACCAAT+GGG + chr1_4:72690914-72690933 Msa0183710:CDS 25.0%
!! TAATCAAGATTGATTCCATT+AGG - chr1_4:72691362-72691381 None:intergenic 25.0%
! AATCAATCTTGATTAATACC+AGG + chr1_4:72691367-72691386 Msa0183710:intron 25.0%
! TGATTAAATTGTAGGCAAAA+TGG + chr1_4:72691625-72691644 Msa0183710:intron 25.0%
! CTATAACTAAAAAGATGGAA+TGG + chr1_4:72691940-72691959 Msa0183710:three_prime_UTR 25.0%
!!! CTGTCATTTTTATTCTTCTT+AGG + chr1_4:72690331-72690350 Msa0183710:CDS 25.0%
! AAGCATGTAAGAAAACAAAA+AGG - chr1_4:72690670-72690689 None:intergenic 25.0%
! ATTCTATAATGAGAAACCAA+TGG + chr1_4:72690913-72690932 Msa0183710:CDS 25.0%
! TTCTATAATGAGAAACCAAT+GGG + chr1_4:72690914-72690933 Msa0183710:CDS 25.0%
!! TAATCAAGATTGATTCCATT+AGG - chr1_4:72691362-72691381 None:intergenic 25.0%
! AATCAATCTTGATTAATACC+AGG + chr1_4:72691367-72691386 Msa0183710:intron 25.0%
! TGATTAAATTGTAGGCAAAA+TGG + chr1_4:72691625-72691644 Msa0183710:intron 25.0%
! CTATAACTAAAAAGATGGAA+TGG + chr1_4:72691940-72691959 Msa0183710:three_prime_UTR 25.0%
TTTCTTCCATGAATCTCTTT+GGG - chr1_4:72690449-72690468 None:intergenic 30.0%
ATTTCTTCCATGAATCTCTT+TGG - chr1_4:72690450-72690469 None:intergenic 30.0%
AAGAAATGTGATTTCTCAGT+TGG + chr1_4:72690463-72690482 Msa0183710:CDS 30.0%
! TAACTTGTCAAAAGAATGGA+CGG + chr1_4:72690551-72690570 Msa0183710:CDS 30.0%
CATTTCTCATAATCTGAATC+CGG - chr1_4:72690577-72690596 None:intergenic 30.0%
TAATGTTTCATCATCACCTT+GGG - chr1_4:72690627-72690646 None:intergenic 30.0%
TTAATGTTTCATCATCACCT+TGG - chr1_4:72690628-72690647 None:intergenic 30.0%
! TGCAACATTTTTGACATGTA+TGG + chr1_4:72690694-72690713 Msa0183710:intron 30.0%
AGAAGCTAAATTTATCAGCA+TGG - chr1_4:72690819-72690838 None:intergenic 30.0%
AAGTATCTTGGTAAAATGAG+AGG + chr1_4:72690867-72690886 Msa0183710:CDS 30.0%
ATAGCATGGAAAGACATTAA+AGG - chr1_4:72691005-72691024 None:intergenic 30.0%
TTTAATGTCTTTCCATGCTA+TGG + chr1_4:72691004-72691023 Msa0183710:CDS 30.0%
ATTAATATCCTACCATAGCA+TGG - chr1_4:72691019-72691038 None:intergenic 30.0%
ACATGTTGTTCACTTATTAC+AGG + chr1_4:72691081-72691100 Msa0183710:intron 30.0%
TATTGGTAGAACTGAAGAAA+GGG + chr1_4:72691140-72691159 Msa0183710:CDS 30.0%
ATTTGATTGAAGAGAATGCA+AGG + chr1_4:72691191-72691210 Msa0183710:CDS 30.0%
AATCTTGATTAATACCAGGT+GGG + chr1_4:72691371-72691390 Msa0183710:intron 30.0%
CATCACAAACATGAATCAAA+TGG + chr1_4:72691419-72691438 Msa0183710:CDS 30.0%
TAAATTGTAGGCAAAATGGT+TGG + chr1_4:72691629-72691648 Msa0183710:intron 30.0%
GTTGGAAATGTTACAATCAA+AGG + chr1_4:72691647-72691666 Msa0183710:CDS 30.0%
! ATGTGGCTGAAATATTTTAC+AGG - chr1_4:72691676-72691695 None:intergenic 30.0%
GTAATATCCTGTAGATATAC+TGG - chr1_4:72691754-72691773 None:intergenic 30.0%
ATTACCTTACTATACACTGA+AGG - chr1_4:72691808-72691827 None:intergenic 30.0%
!!! GAATGGATCTGAGTTTTTTA+TGG + chr1_4:72691957-72691976 Msa0183710:three_prime_UTR 30.0%
TTTCTTCCATGAATCTCTTT+GGG - chr1_4:72690449-72690468 None:intergenic 30.0%
ATTTCTTCCATGAATCTCTT+TGG - chr1_4:72690450-72690469 None:intergenic 30.0%
AAGAAATGTGATTTCTCAGT+TGG + chr1_4:72690463-72690482 Msa0183710:CDS 30.0%
! TAACTTGTCAAAAGAATGGA+CGG + chr1_4:72690551-72690570 Msa0183710:CDS 30.0%
CATTTCTCATAATCTGAATC+CGG - chr1_4:72690577-72690596 None:intergenic 30.0%
TAATGTTTCATCATCACCTT+GGG - chr1_4:72690627-72690646 None:intergenic 30.0%
TTAATGTTTCATCATCACCT+TGG - chr1_4:72690628-72690647 None:intergenic 30.0%
! TGCAACATTTTTGACATGTA+TGG + chr1_4:72690694-72690713 Msa0183710:intron 30.0%
AGAAGCTAAATTTATCAGCA+TGG - chr1_4:72690819-72690838 None:intergenic 30.0%
AAGTATCTTGGTAAAATGAG+AGG + chr1_4:72690867-72690886 Msa0183710:CDS 30.0%
ATAGCATGGAAAGACATTAA+AGG - chr1_4:72691005-72691024 None:intergenic 30.0%
TTTAATGTCTTTCCATGCTA+TGG + chr1_4:72691004-72691023 Msa0183710:CDS 30.0%
ATTAATATCCTACCATAGCA+TGG - chr1_4:72691019-72691038 None:intergenic 30.0%
ACATGTTGTTCACTTATTAC+AGG + chr1_4:72691081-72691100 Msa0183710:intron 30.0%
TATTGGTAGAACTGAAGAAA+GGG + chr1_4:72691140-72691159 Msa0183710:CDS 30.0%
ATTTGATTGAAGAGAATGCA+AGG + chr1_4:72691191-72691210 Msa0183710:CDS 30.0%
AATCTTGATTAATACCAGGT+GGG + chr1_4:72691371-72691390 Msa0183710:intron 30.0%
CATCACAAACATGAATCAAA+TGG + chr1_4:72691419-72691438 Msa0183710:CDS 30.0%
TAAATTGTAGGCAAAATGGT+TGG + chr1_4:72691629-72691648 Msa0183710:intron 30.0%
GTTGGAAATGTTACAATCAA+AGG + chr1_4:72691647-72691666 Msa0183710:CDS 30.0%
! ATGTGGCTGAAATATTTTAC+AGG - chr1_4:72691676-72691695 None:intergenic 30.0%
GTAATATCCTGTAGATATAC+TGG - chr1_4:72691754-72691773 None:intergenic 30.0%
ATTACCTTACTATACACTGA+AGG - chr1_4:72691808-72691827 None:intergenic 30.0%
!!! GAATGGATCTGAGTTTTTTA+TGG + chr1_4:72691957-72691976 Msa0183710:three_prime_UTR 30.0%
ATTATCACTGATCAATCCAG+AGG + chr1_4:72690369-72690388 Msa0183710:CDS 35.0%
GTGATTTCTCAGTTGGAAAA+TGG + chr1_4:72690470-72690489 Msa0183710:CDS 35.0%
! GCAGTAACTTGTCAAAAGAA+TGG + chr1_4:72690547-72690566 Msa0183710:CDS 35.0%
CGGATTCAGATTATGAGAAA+TGG + chr1_4:72690575-72690594 Msa0183710:CDS 35.0%
CAGATTATGAGAAATGGAAG+TGG + chr1_4:72690581-72690600 Msa0183710:CDS 35.0%
! TTTGATGCACTGAAGTATCT+TGG + chr1_4:72690855-72690874 Msa0183710:CDS 35.0%
TCTCTTGTATGCTTAGTTCA+AGG + chr1_4:72690939-72690958 Msa0183710:CDS 35.0%
TATTCCAACTGACAGGAAAA+AGG + chr1_4:72690965-72690984 Msa0183710:CDS 35.0%
AGACATTAAAGGACCATCAT+AGG - chr1_4:72690994-72691013 None:intergenic 35.0%
AGACATCAATTGAGTTCTTC+TGG + chr1_4:72691110-72691129 Msa0183710:CDS 35.0%
GACATCAATTGAGTTCTTCT+GGG + chr1_4:72691111-72691130 Msa0183710:CDS 35.0%
TTCTTCAGTTCTACCAATAG+TGG - chr1_4:72691139-72691158 None:intergenic 35.0%
CTATTGGTAGAACTGAAGAA+AGG + chr1_4:72691139-72691158 Msa0183710:CDS 35.0%
TTGAAGAGAATGCAAGGTAT+TGG + chr1_4:72691197-72691216 Msa0183710:CDS 35.0%
TTGCATTTGATTCAGCTCAT+TGG + chr1_4:72691236-72691255 Msa0183710:CDS 35.0%
CAATCTTGATTAATACCAGG+TGG + chr1_4:72691370-72691389 Msa0183710:intron 35.0%
TGTATTGAGTCCTTTCTCAT+AGG - chr1_4:72691448-72691467 None:intergenic 35.0%
ATGAGAAAGGACTCAATACA+TGG + chr1_4:72691448-72691467 Msa0183710:CDS 35.0%
TGAGAAAGGACTCAATACAT+GGG + chr1_4:72691449-72691468 Msa0183710:CDS 35.0%
! AAAGTGGGTGGATTTGAATT+TGG + chr1_4:72691473-72691492 Msa0183710:CDS 35.0%
! CATACTTCTAAAAACGACTC+GGG - chr1_4:72691511-72691530 None:intergenic 35.0%
! CCATACTTCTAAAAACGACT+CGG - chr1_4:72691512-72691531 None:intergenic 35.0%
GAGATTTCCAGTATATCTAC+AGG + chr1_4:72691744-72691763 Msa0183710:CDS 35.0%
ATGACTGCATTTAGAAGAGA+TGG + chr1_4:72691778-72691797 Msa0183710:CDS 35.0%
ACATCCTTCAGTGTATAGTA+AGG + chr1_4:72691801-72691820 Msa0183710:CDS 35.0%
AGGTAATAAGTGAAGAAGAG+AGG + chr1_4:72691821-72691840 Msa0183710:CDS 35.0%
AGCATTTCGTTCCAAATATC+AGG - chr1_4:72691904-72691923 None:intergenic 35.0%
GGATTGTAAGATCAGTAAGT+CGG - chr1_4:72692069-72692088 None:intergenic 35.0%
ATTATCACTGATCAATCCAG+AGG + chr1_4:72690369-72690388 Msa0183710:CDS 35.0%
GTGATTTCTCAGTTGGAAAA+TGG + chr1_4:72690470-72690489 Msa0183710:CDS 35.0%
! GCAGTAACTTGTCAAAAGAA+TGG + chr1_4:72690547-72690566 Msa0183710:CDS 35.0%
CGGATTCAGATTATGAGAAA+TGG + chr1_4:72690575-72690594 Msa0183710:CDS 35.0%
CAGATTATGAGAAATGGAAG+TGG + chr1_4:72690581-72690600 Msa0183710:CDS 35.0%
! TTTGATGCACTGAAGTATCT+TGG + chr1_4:72690855-72690874 Msa0183710:CDS 35.0%
TCTCTTGTATGCTTAGTTCA+AGG + chr1_4:72690939-72690958 Msa0183710:CDS 35.0%
TATTCCAACTGACAGGAAAA+AGG + chr1_4:72690965-72690984 Msa0183710:CDS 35.0%
AGACATTAAAGGACCATCAT+AGG - chr1_4:72690994-72691013 None:intergenic 35.0%
AGACATCAATTGAGTTCTTC+TGG + chr1_4:72691110-72691129 Msa0183710:CDS 35.0%
GACATCAATTGAGTTCTTCT+GGG + chr1_4:72691111-72691130 Msa0183710:CDS 35.0%
TTCTTCAGTTCTACCAATAG+TGG - chr1_4:72691139-72691158 None:intergenic 35.0%
CTATTGGTAGAACTGAAGAA+AGG + chr1_4:72691139-72691158 Msa0183710:CDS 35.0%
TTGAAGAGAATGCAAGGTAT+TGG + chr1_4:72691197-72691216 Msa0183710:CDS 35.0%
TTGCATTTGATTCAGCTCAT+TGG + chr1_4:72691236-72691255 Msa0183710:CDS 35.0%
CAATCTTGATTAATACCAGG+TGG + chr1_4:72691370-72691389 Msa0183710:intron 35.0%
TGTATTGAGTCCTTTCTCAT+AGG - chr1_4:72691448-72691467 None:intergenic 35.0%
ATGAGAAAGGACTCAATACA+TGG + chr1_4:72691448-72691467 Msa0183710:CDS 35.0%
TGAGAAAGGACTCAATACAT+GGG + chr1_4:72691449-72691468 Msa0183710:CDS 35.0%
! AAAGTGGGTGGATTTGAATT+TGG + chr1_4:72691473-72691492 Msa0183710:CDS 35.0%
! CATACTTCTAAAAACGACTC+GGG - chr1_4:72691511-72691530 None:intergenic 35.0%
! CCATACTTCTAAAAACGACT+CGG - chr1_4:72691512-72691531 None:intergenic 35.0%
GAGATTTCCAGTATATCTAC+AGG + chr1_4:72691744-72691763 Msa0183710:CDS 35.0%
ATGACTGCATTTAGAAGAGA+TGG + chr1_4:72691778-72691797 Msa0183710:CDS 35.0%
ACATCCTTCAGTGTATAGTA+AGG + chr1_4:72691801-72691820 Msa0183710:CDS 35.0%
AGGTAATAAGTGAAGAAGAG+AGG + chr1_4:72691821-72691840 Msa0183710:CDS 35.0%
AGCATTTCGTTCCAAATATC+AGG - chr1_4:72691904-72691923 None:intergenic 35.0%
GGATTGTAAGATCAGTAAGT+CGG - chr1_4:72692069-72692088 None:intergenic 35.0%
AGAAACTGAAGACGTCAACA+TGG + chr1_4:72690417-72690436 Msa0183710:CDS 40.0%
TGCAAACCCAAAGAGATTCA+TGG + chr1_4:72690440-72690459 Msa0183710:CDS 40.0%
GACAGTTGGAATCATAGAGA+GGG - chr1_4:72690513-72690532 None:intergenic 40.0%
! CTTTTGACAAGTTACTGCAG+TGG - chr1_4:72690545-72690564 None:intergenic 40.0%
AAATGGAAGTGGAAGCCATT+AGG + chr1_4:72690592-72690611 Msa0183710:CDS 40.0%
AGCATGGTTTACGTGTGTTT+GGG - chr1_4:72690803-72690822 None:intergenic 40.0%
! AGCTTCTCGATGACATTTTC+AGG + chr1_4:72690832-72690851 Msa0183710:intron 40.0%
GAGAGGAAAGAGAATGATGT+TGG + chr1_4:72690884-72690903 Msa0183710:CDS 40.0%
AGGAAAGAGAATGATGTTGG+TGG + chr1_4:72690887-72690906 Msa0183710:CDS 40.0%
GGAAAGAGAATGATGTTGGT+GGG + chr1_4:72690888-72690907 Msa0183710:CDS 40.0%
AGCATACAAGAGATTCCCAT+TGG - chr1_4:72690932-72690951 None:intergenic 40.0%
AAGGAGTTATTCCAACTGAC+AGG + chr1_4:72690958-72690977 Msa0183710:CDS 40.0%
AGGAAAAAGGTCACCTATGA+TGG + chr1_4:72690978-72690997 Msa0183710:CDS 40.0%
ATGTCTTTCCATGCTATGGT+AGG + chr1_4:72691008-72691027 Msa0183710:intron 40.0%
!! GAGAATGCAAGGTATTGGAA+AGG + chr1_4:72691202-72691221 Msa0183710:CDS 40.0%
CATTTGATTCAGCTCATTGG+TGG + chr1_4:72691239-72691258 Msa0183710:CDS 40.0%
TACCAGGTGGGATTATTACA+TGG + chr1_4:72691383-72691402 Msa0183710:intron 40.0%
TTCCATGTAATAATCCCACC+TGG - chr1_4:72691388-72691407 None:intergenic 40.0%
AGGTGGGATTATTACATGGA+AGG + chr1_4:72691387-72691406 Msa0183710:intron 40.0%
CAAATGGTTGCCTATGAGAA+AGG + chr1_4:72691435-72691454 Msa0183710:CDS 40.0%
ACTCAATACATGGGCAAAGT+GGG + chr1_4:72691458-72691477 Msa0183710:CDS 40.0%
!!! CCGAGTCGTTTTTAGAAGTA+TGG + chr1_4:72691509-72691528 Msa0183710:CDS 40.0%
AGTACGTACCTGTTATGTCT+AGG - chr1_4:72691537-72691556 None:intergenic 40.0%
! ACTCCTTTTAGCACTACTAC+TGG - chr1_4:72691712-72691731 None:intergenic 40.0%
AGAAACTGAAGACGTCAACA+TGG + chr1_4:72690417-72690436 Msa0183710:CDS 40.0%
TGCAAACCCAAAGAGATTCA+TGG + chr1_4:72690440-72690459 Msa0183710:CDS 40.0%
GACAGTTGGAATCATAGAGA+GGG - chr1_4:72690513-72690532 None:intergenic 40.0%
! CTTTTGACAAGTTACTGCAG+TGG - chr1_4:72690545-72690564 None:intergenic 40.0%
AAATGGAAGTGGAAGCCATT+AGG + chr1_4:72690592-72690611 Msa0183710:CDS 40.0%
AGCATGGTTTACGTGTGTTT+GGG - chr1_4:72690803-72690822 None:intergenic 40.0%
! AGCTTCTCGATGACATTTTC+AGG + chr1_4:72690832-72690851 Msa0183710:intron 40.0%
GAGAGGAAAGAGAATGATGT+TGG + chr1_4:72690884-72690903 Msa0183710:CDS 40.0%
AGGAAAGAGAATGATGTTGG+TGG + chr1_4:72690887-72690906 Msa0183710:CDS 40.0%
GGAAAGAGAATGATGTTGGT+GGG + chr1_4:72690888-72690907 Msa0183710:CDS 40.0%
AGCATACAAGAGATTCCCAT+TGG - chr1_4:72690932-72690951 None:intergenic 40.0%
AAGGAGTTATTCCAACTGAC+AGG + chr1_4:72690958-72690977 Msa0183710:CDS 40.0%
AGGAAAAAGGTCACCTATGA+TGG + chr1_4:72690978-72690997 Msa0183710:CDS 40.0%
ATGTCTTTCCATGCTATGGT+AGG + chr1_4:72691008-72691027 Msa0183710:intron 40.0%
!! GAGAATGCAAGGTATTGGAA+AGG + chr1_4:72691202-72691221 Msa0183710:CDS 40.0%
CATTTGATTCAGCTCATTGG+TGG + chr1_4:72691239-72691258 Msa0183710:CDS 40.0%
TACCAGGTGGGATTATTACA+TGG + chr1_4:72691383-72691402 Msa0183710:intron 40.0%
TTCCATGTAATAATCCCACC+TGG - chr1_4:72691388-72691407 None:intergenic 40.0%
AGGTGGGATTATTACATGGA+AGG + chr1_4:72691387-72691406 Msa0183710:intron 40.0%
CAAATGGTTGCCTATGAGAA+AGG + chr1_4:72691435-72691454 Msa0183710:CDS 40.0%
ACTCAATACATGGGCAAAGT+GGG + chr1_4:72691458-72691477 Msa0183710:CDS 40.0%
!!! CCGAGTCGTTTTTAGAAGTA+TGG + chr1_4:72691509-72691528 Msa0183710:CDS 40.0%
AGTACGTACCTGTTATGTCT+AGG - chr1_4:72691537-72691556 None:intergenic 40.0%
! ACTCCTTTTAGCACTACTAC+TGG - chr1_4:72691712-72691731 None:intergenic 40.0%
TTCTTCCAATGCAAGCCAAC+TGG - chr1_4:72690401-72690420 None:intergenic 45.0%
GTTGGAATCATAGAGAGGGT+AGG - chr1_4:72690509-72690528 None:intergenic 45.0%
GGACAGTTGGAATCATAGAG+AGG - chr1_4:72690514-72690533 None:intergenic 45.0%
TTGTCAAAAGAATGGACGGC+CGG + chr1_4:72690555-72690574 Msa0183710:CDS 45.0%
CTTGGGATGGAACAACCTAA+TGG - chr1_4:72690610-72690629 None:intergenic 45.0%
! CATTAGGTTGTTCCATCCCA+AGG + chr1_4:72690608-72690627 Msa0183710:CDS 45.0%
GTTTCATCATCACCTTGGGA+TGG - chr1_4:72690623-72690642 None:intergenic 45.0%
CAGCATGGTTTACGTGTGTT+TGG - chr1_4:72690804-72690823 None:intergenic 45.0%
! GTGACCTTTTTCCTGTCAGT+TGG - chr1_4:72690972-72690991 None:intergenic 45.0%
GACTCAATACATGGGCAAAG+TGG + chr1_4:72691457-72691476 Msa0183710:CDS 45.0%
!! AAAACGACTCGGGTTTTTCG+AGG - chr1_4:72691501-72691520 None:intergenic 45.0%
GTATGGCACCTAGACATAAC+AGG + chr1_4:72691526-72691545 Msa0183710:CDS 45.0%
TTTAGCACTACTACTGGTCC+TGG - chr1_4:72691706-72691725 None:intergenic 45.0%
GGACCAGTAGTAGTGCTAAA+AGG + chr1_4:72691706-72691725 Msa0183710:CDS 45.0%
GAAGAAGAGAGGCAGAAACA+AGG + chr1_4:72691832-72691851 Msa0183710:CDS 45.0%
GAGAGGCAGAAACAAGGTAA+TGG + chr1_4:72691838-72691857 Msa0183710:CDS 45.0%
TCCAAATATCAGGCACACCA+GGG - chr1_4:72691894-72691913 None:intergenic 45.0%
TTCCAAATATCAGGCACACC+AGG - chr1_4:72691895-72691914 None:intergenic 45.0%
TTCTTCCAATGCAAGCCAAC+TGG - chr1_4:72690401-72690420 None:intergenic 45.0%
GTTGGAATCATAGAGAGGGT+AGG - chr1_4:72690509-72690528 None:intergenic 45.0%
GGACAGTTGGAATCATAGAG+AGG - chr1_4:72690514-72690533 None:intergenic 45.0%
TTGTCAAAAGAATGGACGGC+CGG + chr1_4:72690555-72690574 Msa0183710:CDS 45.0%
CTTGGGATGGAACAACCTAA+TGG - chr1_4:72690610-72690629 None:intergenic 45.0%
! CATTAGGTTGTTCCATCCCA+AGG + chr1_4:72690608-72690627 Msa0183710:CDS 45.0%
GTTTCATCATCACCTTGGGA+TGG - chr1_4:72690623-72690642 None:intergenic 45.0%
CAGCATGGTTTACGTGTGTT+TGG - chr1_4:72690804-72690823 None:intergenic 45.0%
! GTGACCTTTTTCCTGTCAGT+TGG - chr1_4:72690972-72690991 None:intergenic 45.0%
GACTCAATACATGGGCAAAG+TGG + chr1_4:72691457-72691476 Msa0183710:CDS 45.0%
!! AAAACGACTCGGGTTTTTCG+AGG - chr1_4:72691501-72691520 None:intergenic 45.0%
GTATGGCACCTAGACATAAC+AGG + chr1_4:72691526-72691545 Msa0183710:CDS 45.0%
TTTAGCACTACTACTGGTCC+TGG - chr1_4:72691706-72691725 None:intergenic 45.0%
GGACCAGTAGTAGTGCTAAA+AGG + chr1_4:72691706-72691725 Msa0183710:CDS 45.0%
GAAGAAGAGAGGCAGAAACA+AGG + chr1_4:72691832-72691851 Msa0183710:CDS 45.0%
GAGAGGCAGAAACAAGGTAA+TGG + chr1_4:72691838-72691857 Msa0183710:CDS 45.0%
TCCAAATATCAGGCACACCA+GGG - chr1_4:72691894-72691913 None:intergenic 45.0%
TTCCAAATATCAGGCACACC+AGG - chr1_4:72691895-72691914 None:intergenic 45.0%
!! ATCCAGAGGAAGTGTCCAGT+TGG + chr1_4:72690383-72690402 Msa0183710:CDS 50.0%
!! AGTGTCCAGTTGGCTTGCAT+TGG + chr1_4:72690393-72690412 Msa0183710:CDS 50.0%
AGTGGCGAGATAAGGACAGT+TGG - chr1_4:72690527-72690546 None:intergenic 50.0%
GTTACTGCAGTGGCGAGATA+AGG - chr1_4:72690535-72690554 None:intergenic 50.0%
GTTCTTCTGGGCACCACTAT+TGG + chr1_4:72691123-72691142 Msa0183710:CDS 50.0%
!! GCTCATTGGTGGACTCATTC+TGG + chr1_4:72691250-72691269 Msa0183710:CDS 50.0%
CAATACATGGGCAAAGTGGG+TGG + chr1_4:72691461-72691480 Msa0183710:CDS 50.0%
TTCAGCCACATGCATGTTCC+AGG + chr1_4:72691685-72691704 Msa0183710:CDS 50.0%
AATGGCTGCAATCAGAGGAC+TGG - chr1_4:72691864-72691883 None:intergenic 50.0%
AGTCCTCTGATTGCAGCCAT+TGG + chr1_4:72691863-72691882 Msa0183710:CDS 50.0%
AAATATCAGGCACACCAGGG+AGG - chr1_4:72691891-72691910 None:intergenic 50.0%
TCCCTGGTGTGCCTGATATT+TGG + chr1_4:72691890-72691909 Msa0183710:CDS 50.0%
GGAACGAAATGCTGAGTGCA+TGG + chr1_4:72691911-72691930 Msa0183710:CDS 50.0%
!! ATCCAGAGGAAGTGTCCAGT+TGG + chr1_4:72690383-72690402 Msa0183710:CDS 50.0%
!! AGTGTCCAGTTGGCTTGCAT+TGG + chr1_4:72690393-72690412 Msa0183710:CDS 50.0%
AGTGGCGAGATAAGGACAGT+TGG - chr1_4:72690527-72690546 None:intergenic 50.0%
GTTACTGCAGTGGCGAGATA+AGG - chr1_4:72690535-72690554 None:intergenic 50.0%
GTTCTTCTGGGCACCACTAT+TGG + chr1_4:72691123-72691142 Msa0183710:CDS 50.0%
!! GCTCATTGGTGGACTCATTC+TGG + chr1_4:72691250-72691269 Msa0183710:CDS 50.0%
CAATACATGGGCAAAGTGGG+TGG + chr1_4:72691461-72691480 Msa0183710:CDS 50.0%
TTCAGCCACATGCATGTTCC+AGG + chr1_4:72691685-72691704 Msa0183710:CDS 50.0%
AATGGCTGCAATCAGAGGAC+TGG - chr1_4:72691864-72691883 None:intergenic 50.0%
AGTCCTCTGATTGCAGCCAT+TGG + chr1_4:72691863-72691882 Msa0183710:CDS 50.0%
AAATATCAGGCACACCAGGG+AGG - chr1_4:72691891-72691910 None:intergenic 50.0%
TCCCTGGTGTGCCTGATATT+TGG + chr1_4:72691890-72691909 Msa0183710:CDS 50.0%
GGAACGAAATGCTGAGTGCA+TGG + chr1_4:72691911-72691930 Msa0183710:CDS 50.0%
AGCCAACTGGACACTTCCTC+TGG - chr1_4:72690388-72690407 None:intergenic 55.0%
CTGGTCCTGGAACATGCATG+TGG - chr1_4:72691693-72691712 None:intergenic 55.0%
GCACCAATGGCTGCAATCAG+AGG - chr1_4:72691869-72691888 None:intergenic 55.0%
AGCCAACTGGACACTTCCTC+TGG - chr1_4:72690388-72690407 None:intergenic 55.0%
CTGGTCCTGGAACATGCATG+TGG - chr1_4:72691693-72691712 None:intergenic 55.0%
GCACCAATGGCTGCAATCAG+AGG - chr1_4:72691869-72691888 None:intergenic 55.0%
! TGCAGCCATTGGTGCCTCCC+TGG + chr1_4:72691874-72691893 Msa0183710:CDS 65.0%
!! GCACACCAGGGAGGCACCAA+TGG - chr1_4:72691882-72691901 None:intergenic 65.0%
! TGCAGCCATTGGTGCCTCCC+TGG + chr1_4:72691874-72691893 Msa0183710:CDS 65.0%
!! GCACACCAGGGAGGCACCAA+TGG - chr1_4:72691882-72691901 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 72690307 72692102 72690307 ID=Msa0183710;Name=Msa0183710
chr1_4 mRNA 72690307 72692102 72690307 ID=Msa0183710-mRNA-1;Parent=Msa0183710;Name=Msa0183710-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.8|1|1|1|5|163|378
chr1_4 exon 72690307 72690629 72690307 ID=Msa0183710-mRNA-1:exon:24628;Parent=Msa0183710-mRNA-1
chr1_4 exon 72690854 72691025 72690854 ID=Msa0183710-mRNA-1:exon:24629;Parent=Msa0183710-mRNA-1
chr1_4 exon 72691103 72691284 72691103 ID=Msa0183710-mRNA-1:exon:24630;Parent=Msa0183710-mRNA-1
chr1_4 exon 72691389 72691547 72691389 ID=Msa0183710-mRNA-1:exon:24631;Parent=Msa0183710-mRNA-1
chr1_4 exon 72691639 72692102 72691639 ID=Msa0183710-mRNA-1:exon:24632;Parent=Msa0183710-mRNA-1
chr1_4 CDS 72690307 72690629 72690307 ID=Msa0183710-mRNA-1:cds;Parent=Msa0183710-mRNA-1
chr1_4 CDS 72690854 72691025 72690854 ID=Msa0183710-mRNA-1:cds;Parent=Msa0183710-mRNA-1
chr1_4 CDS 72691103 72691284 72691103 ID=Msa0183710-mRNA-1:cds;Parent=Msa0183710-mRNA-1
chr1_4 CDS 72691389 72691547 72691389 ID=Msa0183710-mRNA-1:cds;Parent=Msa0183710-mRNA-1
chr1_4 CDS 72691639 72691939 72691639 ID=Msa0183710-mRNA-1:cds;Parent=Msa0183710-mRNA-1
chr1_4 three_prime_UTR 72691940 72692102 72691940 ID=Msa0183710-mRNA-1:three_prime_utr;Parent=Msa0183710-mRNA-1
Gene Sequence

>Msa0183710

ATGGCAAAAACAAACCTTCATTTACTGTCATTTTTATTCTTCTTAGGCTTATTCAACTGCACATTATCACTGATCAATCCAGAGGAAGTGTCCAGTTGGCTTGCATTGGAAGAAACTGAAGACGTCAACATGGTGCAAACCCAAAGAGATTCATGGAAGAAATGTGATTTCTCAGTTGGAAAATGGATATTTGATCAAACCTACCCTCTCTATGATTCCAACTGTCCTTATCTCGCCACTGCAGTAACTTGTCAAAAGAATGGACGGCCGGATTCAGATTATGAGAAATGGAAGTGGAAGCCATTAGGTTGTTCCATCCCAAGGTTTGATGCACTGAAGTATCTTGGTAAAATGAGAGGAAAGAGAATGATGTTGGTGGGCGATTCTATAATGAGAAACCAATGGGAATCTCTTGTATGCTTAGTTCAAGGAGTTATTCCAACTGACAGGAAAAAGGTCACCTATGATGGTCCTTTAATGTCTTTCCATGCTATGGATTTTGAGACATCAATTGAGTTCTTCTGGGCACCACTATTGGTAGAACTGAAGAAAGGGTCTAATAATAAGAGAATTCTACATTTGGATTTGATTGAAGAGAATGCAAGGTATTGGAAAGGAGTTGATATTCTTGCATTTGATTCAGCTCATTGGTGGACTCATTCTGGTCAATCTAGCTCGTGGGATTATTACATGGAAGGAAATAGTATCATCACAAACATGAATCAAATGGTTGCCTATGAGAAAGGACTCAATACATGGGCAAAGTGGGTGGATTTGAATTTGGATCCTCGAAAAACCCGAGTCGTTTTTAGAAGTATGGCACCTAGACATAACAGGCAAAATGGTTGGAAATGTTACAATCAAAGGCAACCTGTAAAATATTTCAGCCACATGCATGTTCCAGGACCAGTAGTAGTGCTAAAAGGAGTGCTGAAGAGAATGAGATTTCCAGTATATCTACAGGATATTACAACAATGACTGCATTTAGAAGAGATGGACATCCTTCAGTGTATAGTAAGGTAATAAGTGAAGAAGAGAGGCAGAAACAAGGTAATGGCCAGTCCTCTGATTGCAGCCATTGGTGCCTCCCTGGTGTGCCTGATATTTGGAACGAAATGCTGAGTGCATGGCTTTAA

Protein sequence

>Msa0183710

MAKTNLHLLSFLFFLGLFNCTLSLINPEEVSSWLALEETEDVNMVQTQRDSWKKCDFSVGKWIFDQTYPLYDSNCPYLATAVTCQKNGRPDSDYEKWKWKPLGCSIPRFDALKYLGKMRGKRMMLVGDSIMRNQWESLVCLVQGVIPTDRKKVTYDGPLMSFHAMDFETSIEFFWAPLLVELKKGSNNKRILHLDLIEENARYWKGVDILAFDSAHWWTHSGQSSSWDYYMEGNSIITNMNQMVAYEKGLNTWAKWVDLNLDPRKTRVVFRSMAPRHNRQNGWKCYNQRQPVKYFSHMHVPGPVVVLKGVLKRMRFPVYLQDITTMTAFRRDGHPSVYSKVISEEERQKQGNGQSSDCSHWCLPGVPDIWNEMLSAWL*