AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476560 MtrunA17_Chr3g0136321 95.951 247 4 3 1 243 1 245 2.06e-168 464
Msa0476560 MtrunA17_Chr4g0000421 47.368 76 35 3 118 189 132 206 9.69e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476560 AT5G21920.1 60.656 183 60 2 48 230 64 234 5.97e-70 215
Msa0476560 AT5G21920.2 59.813 107 42 1 48 154 64 169 5.32e-36 125
Msa0476560 AT4G27990.1 50.000 78 34 3 118 191 135 211 2.30e-14 70.1
Msa0476560 AT3G07430.1 48.718 78 35 3 118 191 149 225 4.28e-14 69.7

Find 94 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGATGGAGGGGAGAAAT+TGG 0.246722 3_3:+80372043 None:intergenic
GCATGTATGTTCATTTAAAT+AGG 0.259403 3_3:-80370093 Msa0476560:three_prime_UTR
TTGGGGCAAACACAAATAAA+AGG 0.293594 3_3:+80369892 None:intergenic
CATTCTTACAGAATAGAAAA+TGG 0.329472 3_3:-80372186 Msa0476560:exon
AGAGAGTAGTTTGTTTAAGA+AGG 0.343444 3_3:+80371965 None:intergenic
AAGATTATCTATCTCATTGC+AGG 0.355844 3_3:-80372240 Msa0476560:five_prime_UTR
ATTATCGACGGCGTTGGAAA+TGG 0.365129 3_3:+80372025 None:intergenic
ACGGAGCTCAGACAGGATAA+TGG 0.369911 3_3:+80372215 None:intergenic
TTGAGAAAGGGGAATGCTAA+TGG 0.370536 3_3:+80372077 None:intergenic
GCTGGCTTAGTGGTGGCTAA+TGG 0.379478 3_3:-80371739 Msa0476560:CDS
AGCTAAGGAGTGGAGAAGTT+TGG 0.382379 3_3:+80371998 None:intergenic
TTACCTGGTGATTCCGTGGC+TGG 0.385685 3_3:-80371757 Msa0476560:CDS
GAGAGTAGTTTGTTTAAGAA+GGG 0.386231 3_3:+80371966 None:intergenic
TGAGAAAGGGGAATGCTAAT+GGG 0.387303 3_3:+80372078 None:intergenic
TAACCTGTAGGCACGTGTTA+TGG 0.398782 3_3:+80371928 None:intergenic
TCTGTGACTGGAAGCTCAGC+AGG 0.408614 3_3:+80370266 None:intergenic
TTACTTCTTCACAGAACAAA+TGG 0.426880 3_3:-80370196 Msa0476560:CDS
CTGCCATCGTTGCTCCTCTC+AGG 0.431185 3_3:-80371639 Msa0476560:intron
CGGAGCTCAGACAGGATAAT+GGG 0.435288 3_3:+80372216 None:intergenic
ACAACACCTTGCTCGTTGCC+AGG 0.436913 3_3:-80371693 Msa0476560:CDS
AGGGGAGAAATTGGAGATGG+GGG 0.451216 3_3:+80372052 None:intergenic
TTAAATAGTACGAGAATTCA+AGG 0.452730 3_3:+80369951 None:intergenic
TTGCCAGGCTTGTTCTTACC+TGG 0.458380 3_3:-80371678 Msa0476560:CDS
GAGGGGAGAAATTGGAGATG+GGG 0.461207 3_3:+80372051 None:intergenic
TGAGGCGGCTTCAAGGGATC+GGG 0.461867 3_3:-80370172 Msa0476560:CDS
TGATTCCGTGGCTGGCTTAG+TGG 0.463142 3_3:-80371749 Msa0476560:CDS
CCACGGAATACATTCAAATA+CGG 0.466648 3_3:+80370377 None:intergenic
ATGAGGCGGCTTCAAGGGAT+CGG 0.480718 3_3:-80370173 Msa0476560:CDS
AAATGGATGAGGCGGCTTCA+AGG 0.483527 3_3:-80370179 Msa0476560:CDS
ACGATGGCAGGAGGAGCGTT+AGG 0.485173 3_3:+80371652 None:intergenic
CAGAACAAGGAATGCAAGGA+TGG 0.486196 3_3:+80370319 None:intergenic
TGCTTAGATTGTTCTGTGAC+TGG 0.486287 3_3:+80370254 None:intergenic
AATGGATGAGGCGGCTTCAA+GGG 0.495750 3_3:-80370178 Msa0476560:CDS
GGAGGGGAGAAATTGGAGAT+GGG 0.501879 3_3:+80372050 None:intergenic
GATGTTCTAATTTGCAGAAG+TGG 0.505099 3_3:+80370139 None:intergenic
GAGAAAGGGGAATGCTAATG+GGG 0.512370 3_3:+80372079 None:intergenic
AGAGTAGTTTGTTTAAGAAG+GGG 0.518070 3_3:+80371967 None:intergenic
TGGAGGGGAGAAATTGGAGA+TGG 0.518639 3_3:+80372049 None:intergenic
CTGAGAGGAGCAACGATGGC+AGG 0.520472 3_3:+80371640 None:intergenic
GGAACAATTATCGACGGCGT+TGG 0.521064 3_3:+80372019 None:intergenic
ATTCCATAACACGTGCCTAC+AGG 0.524499 3_3:-80371931 Msa0476560:intron
CGATATGATTCTAATAAACT+CGG 0.528042 3_3:+80369986 None:intergenic
GTAACTACAGGAACAGTAGT+AGG 0.539864 3_3:-80371813 Msa0476560:CDS
TGCAGCAGCAGTGCTAGTGA+AGG 0.542097 3_3:+80370292 None:intergenic
AGGAGGAGCGTTAGGAAACC+AGG 0.547677 3_3:+80371660 None:intergenic
AAACCAGGTAAGAACAAGCC+TGG 0.548754 3_3:+80371675 None:intergenic
GAACTCTACGGAGCTCAGAC+AGG 0.548853 3_3:+80372208 None:intergenic
CTTCGTTTCTGTATCAGTGG+TGG 0.549154 3_3:+80372136 None:intergenic
TTCACAGTTATCATAGTCCT+AGG 0.551523 3_3:-80370057 Msa0476560:three_prime_UTR
GGCGTTGGAAATGGATGGAG+GGG 0.557766 3_3:+80372034 None:intergenic
CTTCTTCGTTTCTGTATCAG+TGG 0.559382 3_3:+80372133 None:intergenic
CGTATTTGAATGTATTCCGT+GGG 0.560273 3_3:-80370376 Msa0476560:CDS
GCTCGAAAATTGAGTTGCCT+AGG 0.562917 3_3:+80370040 None:intergenic
AACAAGCCTGGCAACGAGCA+AGG 0.565234 3_3:+80371687 None:intergenic
TAGAAAATGGCCGTTATGAA+CGG 0.567715 3_3:-80372173 Msa0476560:exon
TAAATAGTACGAGAATTCAA+GGG 0.568271 3_3:+80369952 None:intergenic
CCGTATTTGAATGTATTCCG+TGG 0.568529 3_3:-80370377 Msa0476560:CDS
CACGGAATACATTCAAATAC+GGG 0.572341 3_3:+80370378 None:intergenic
AGATTCGGTGCAGTAACTAC+AGG 0.574341 3_3:-80371825 Msa0476560:CDS
AGAGATCCAGTCCACCGAGA+GGG 0.575748 3_3:+80370345 None:intergenic
ATTCAAATACGGGTCACATA+CGG 0.577203 3_3:+80370388 None:intergenic
CGGCGTTGGAAATGGATGGA+GGG 0.581108 3_3:+80372033 None:intergenic
AGATCCAGTCCACCGAGAGG+GGG 0.582086 3_3:+80370347 None:intergenic
AGAACAAGGAATGCAAGGAT+GGG 0.585406 3_3:+80370320 None:intergenic
TCGACGGCGTTGGAAATGGA+TGG 0.585432 3_3:+80372029 None:intergenic
TAGTGAAGGCATTCAGAACA+AGG 0.586028 3_3:+80370306 None:intergenic
CATTCAGAACAAGGAATGCA+AGG 0.587879 3_3:+80370315 None:intergenic
CACAGAACAAATGGATGAGG+CGG 0.594547 3_3:-80370187 Msa0476560:CDS
AAGCCAGCCACGGAATCACC+AGG 0.598530 3_3:+80371754 None:intergenic
TTCTGTAAGAATGAACTCTA+CGG 0.599286 3_3:+80372196 None:intergenic
ACGGCGTTGGAAATGGATGG+AGG 0.600079 3_3:+80372032 None:intergenic
GTTCTAATTTGCAGAAGTGG+AGG 0.600682 3_3:+80370142 None:intergenic
GATCCAGTCCACCGAGAGGG+GGG 0.602974 3_3:+80370348 None:intergenic
TGTGAAGAAGTAACGTCGGT+AGG 0.608391 3_3:+80370206 None:intergenic
GGCAAACACAAATAAAAGGA+AGG 0.615144 3_3:+80369896 None:intergenic
CGAGTCGCAACCGTTCATAA+CGG 0.615766 3_3:+80372163 None:intergenic
CTTCACAGAACAAATGGATG+AGG 0.621441 3_3:-80370190 Msa0476560:CDS
TTCCGTGGCTGGCTTAGTGG+TGG 0.624704 3_3:-80371746 Msa0476560:CDS
TGACCTGAGAGGAGCAACGA+TGG 0.624970 3_3:+80371636 None:intergenic
GAGATCCAGTCCACCGAGAG+GGG 0.626757 3_3:+80370346 None:intergenic
AGAGGAGCAACGATGGCAGG+AGG 0.633054 3_3:+80371643 None:intergenic
CTGTGACTGGAAGCTCAGCA+GGG 0.634111 3_3:+80370267 None:intergenic
GTCACAGAACAATCTAAGCA+AGG 0.634902 3_3:-80370251 Msa0476560:CDS
ACTACAGGAACAGTAGTAGG+TGG 0.635762 3_3:-80371810 Msa0476560:CDS
AGCCACCACTAAGCCAGCCA+CGG 0.636007 3_3:+80371744 None:intergenic
AAGTTTGGAACAATTATCGA+CGG 0.638484 3_3:+80372013 None:intergenic
TTAAATGAACATACATGCAG+AGG 0.640529 3_3:+80370098 None:intergenic
AAATAGTACGAGAATTCAAG+GGG 0.649880 3_3:+80369953 None:intergenic
GCACGTGTTATGGAATTGAG+AGG 0.651865 3_3:+80371938 None:intergenic
GAGAGATCCAGTCCACCGAG+AGG 0.664113 3_3:+80370344 None:intergenic
CTACAGGAACAGTAGTAGGT+GGG 0.671134 3_3:-80371809 Msa0476560:CDS
GTTCTGTGAAGAAGTAACGT+CGG 0.698371 3_3:+80370202 None:intergenic
AGAAATGTGACTGACCTGAG+AGG 0.708018 3_3:+80371625 None:intergenic
GGAATCACCAGGTAAAACAG+CGG 0.751307 3_3:+80371765 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTTTCTATCAATATC+TGG + chr3_3:80370632-80370651 None:intergenic 15.0%
!! ATTGATAGAAAATTATAGAA+TGG - chr3_3:80370635-80370654 Msa0476560:intron 15.0%
!!! TATAATTTTCTATCAATATC+TGG + chr3_3:80370632-80370651 None:intergenic 15.0%
!! ATTGATAGAAAATTATAGAA+TGG - chr3_3:80370635-80370654 Msa0476560:intron 15.0%
!! ATAGAAAATTATAGAATGGT+TGG - chr3_3:80370639-80370658 Msa0476560:intron 20.0%
!!! TTTTTTTTTGTTGAAATGCA+AGG - chr3_3:80370726-80370745 Msa0476560:intron 20.0%
!! TTGAATTATTAACAAAGTCA+CGG + chr3_3:80370824-80370843 None:intergenic 20.0%
!!! TCAAATATTTTCTACGTAAA+TGG + chr3_3:80371559-80371578 None:intergenic 20.0%
!! CATTAAATAATTAGCTACAT+TGG + chr3_3:80371711-80371730 None:intergenic 20.0%
!! AAAAATATCATATGAATCAC+AGG + chr3_3:80372178-80372197 None:intergenic 20.0%
!! ATAGAAAATTATAGAATGGT+TGG - chr3_3:80370639-80370658 Msa0476560:intron 20.0%
!!! TTTTTTTTTGTTGAAATGCA+AGG - chr3_3:80370726-80370745 Msa0476560:intron 20.0%
!! TTGAATTATTAACAAAGTCA+CGG + chr3_3:80370824-80370843 None:intergenic 20.0%
!!! TCAAATATTTTCTACGTAAA+TGG + chr3_3:80371559-80371578 None:intergenic 20.0%
!! CATTAAATAATTAGCTACAT+TGG + chr3_3:80371711-80371730 None:intergenic 20.0%
!! AAAAATATCATATGAATCAC+AGG + chr3_3:80372178-80372197 None:intergenic 20.0%
! CATTCTTACAGAATAGAAAA+TGG - chr3_3:80370007-80370026 Msa0476560:three_prime_UTR 25.0%
!! AAAATTTTATCTTCCATGAG+TGG - chr3_3:80370678-80370697 Msa0476560:intron 25.0%
!!! AATGTTTTTGTCACATGATA+AGG - chr3_3:80370891-80370910 Msa0476560:intron 25.0%
!!! ATGTTTTTGTCACATGATAA+GGG - chr3_3:80370892-80370911 Msa0476560:intron 25.0%
! TTGTCAAAAGTTTCACAATT+GGG + chr3_3:80370919-80370938 None:intergenic 25.0%
!! CTAGTTTGAAATCTTAACAA+AGG - chr3_3:80370947-80370966 Msa0476560:intron 25.0%
!! AACTCTTTTCTAATTGAGTA+TGG + chr3_3:80371039-80371058 None:intergenic 25.0%
! TAGCATTTCTCTTAGAAAAA+TGG - chr3_3:80371236-80371255 Msa0476560:intron 25.0%
! AGCATTTCTCTTAGAAAAAT+GGG - chr3_3:80371237-80371256 Msa0476560:intron 25.0%
!! ACCATTTGATTTCAATCAAA+TGG + chr3_3:80371436-80371455 None:intergenic 25.0%
!! GCATCATACATCAAATATTT+TGG + chr3_3:80371634-80371653 None:intergenic 25.0%
! ACAACATACACAGATTTAAT+TGG - chr3_3:80371735-80371754 Msa0476560:CDS 25.0%
! GCATGTATGTTCATTTAAAT+AGG - chr3_3:80372100-80372119 Msa0476560:CDS 25.0%
! CGATATGATTCTAATAAACT+CGG + chr3_3:80372210-80372229 None:intergenic 25.0%
! TAAATAGTACGAGAATTCAA+GGG + chr3_3:80372244-80372263 None:intergenic 25.0%
! TTAAATAGTACGAGAATTCA+AGG + chr3_3:80372245-80372264 None:intergenic 25.0%
! CATTCTTACAGAATAGAAAA+TGG - chr3_3:80370007-80370026 Msa0476560:three_prime_UTR 25.0%
!! AAAATTTTATCTTCCATGAG+TGG - chr3_3:80370678-80370697 Msa0476560:intron 25.0%
!!! AATGTTTTTGTCACATGATA+AGG - chr3_3:80370891-80370910 Msa0476560:intron 25.0%
!!! ATGTTTTTGTCACATGATAA+GGG - chr3_3:80370892-80370911 Msa0476560:intron 25.0%
! TTGTCAAAAGTTTCACAATT+GGG + chr3_3:80370919-80370938 None:intergenic 25.0%
!! CTAGTTTGAAATCTTAACAA+AGG - chr3_3:80370947-80370966 Msa0476560:intron 25.0%
!! AACTCTTTTCTAATTGAGTA+TGG + chr3_3:80371039-80371058 None:intergenic 25.0%
! TAGCATTTCTCTTAGAAAAA+TGG - chr3_3:80371236-80371255 Msa0476560:intron 25.0%
! AGCATTTCTCTTAGAAAAAT+GGG - chr3_3:80371237-80371256 Msa0476560:intron 25.0%
!! ACCATTTGATTTCAATCAAA+TGG + chr3_3:80371436-80371455 None:intergenic 25.0%
!! GCATCATACATCAAATATTT+TGG + chr3_3:80371634-80371653 None:intergenic 25.0%
! ACAACATACACAGATTTAAT+TGG - chr3_3:80371735-80371754 Msa0476560:CDS 25.0%
! GCATGTATGTTCATTTAAAT+AGG - chr3_3:80372100-80372119 Msa0476560:CDS 25.0%
! CGATATGATTCTAATAAACT+CGG + chr3_3:80372210-80372229 None:intergenic 25.0%
! TAAATAGTACGAGAATTCAA+GGG + chr3_3:80372244-80372263 None:intergenic 25.0%
! TTAAATAGTACGAGAATTCA+AGG + chr3_3:80372245-80372264 None:intergenic 25.0%
AAGATTATCTATCTCATTGC+AGG - chr3_3:80369953-80369972 Msa0476560:three_prime_UTR 30.0%
TTCTGTAAGAATGAACTCTA+CGG + chr3_3:80370000-80370019 None:intergenic 30.0%
! AAGTTTGGAACAATTATCGA+CGG + chr3_3:80370183-80370202 None:intergenic 30.0%
!! AGAGTAGTTTGTTTAAGAAG+GGG + chr3_3:80370229-80370248 None:intergenic 30.0%
!! GAGAGTAGTTTGTTTAAGAA+GGG + chr3_3:80370230-80370249 None:intergenic 30.0%
!! AGAGAGTAGTTTGTTTAAGA+AGG + chr3_3:80370231-80370250 None:intergenic 30.0%
CTAACATGTTATTCACAATG+TGG - chr3_3:80370600-80370619 Msa0476560:intron 30.0%
GAAAATTATAGAATGGTTGG+AGG - chr3_3:80370642-80370661 Msa0476560:intron 30.0%
TACAAAGATAGGTACCAATT+TGG + chr3_3:80370783-80370802 None:intergenic 30.0%
! ACAAAGTCACGGATTAATTT+GGG + chr3_3:80370813-80370832 None:intergenic 30.0%
! AACAAAGTCACGGATTAATT+TGG + chr3_3:80370814-80370833 None:intergenic 30.0%
!! TTCAAACTAGTCTCTGTTTT+TGG - chr3_3:80370839-80370858 Msa0476560:intron 30.0%
GTGACAAAAACATTAAGACA+GGG + chr3_3:80370885-80370904 None:intergenic 30.0%
TGTGACAAAAACATTAAGAC+AGG + chr3_3:80370886-80370905 None:intergenic 30.0%
CTTGTCAAAAGTTTCACAAT+TGG + chr3_3:80370920-80370939 None:intergenic 30.0%
! AGTGTTTCACGAATTGTTTT+TGG - chr3_3:80371098-80371117 Msa0476560:intron 30.0%
! TAAGAGAAATGCTACTTGTA+GGG + chr3_3:80371230-80371249 None:intergenic 30.0%
ACATGTAAGTTCCATACTTA+AGG - chr3_3:80371308-80371327 Msa0476560:intron 30.0%
GCCATTTGATTGAAATCAAA+TGG - chr3_3:80371432-80371451 Msa0476560:intron 30.0%
! GATGATTGAAATTTTCTTGC+AGG - chr3_3:80371512-80371531 Msa0476560:intron 30.0%
GTAGAAAATATTTGAGTAGC+TGG - chr3_3:80371564-80371583 Msa0476560:intron 30.0%
CGTAGATAGTTAGATTCTAT+TGG + chr3_3:80371603-80371622 None:intergenic 30.0%
TTACTTCTTCACAGAACAAA+TGG - chr3_3:80371997-80372016 Msa0476560:CDS 30.0%
TTAAATGAACATACATGCAG+AGG + chr3_3:80372098-80372117 None:intergenic 30.0%
AAATAGTACGAGAATTCAAG+GGG + chr3_3:80372243-80372262 None:intergenic 30.0%
AAGATTATCTATCTCATTGC+AGG - chr3_3:80369953-80369972 Msa0476560:three_prime_UTR 30.0%
TTCTGTAAGAATGAACTCTA+CGG + chr3_3:80370000-80370019 None:intergenic 30.0%
! AAGTTTGGAACAATTATCGA+CGG + chr3_3:80370183-80370202 None:intergenic 30.0%
!! AGAGTAGTTTGTTTAAGAAG+GGG + chr3_3:80370229-80370248 None:intergenic 30.0%
!! GAGAGTAGTTTGTTTAAGAA+GGG + chr3_3:80370230-80370249 None:intergenic 30.0%
!! AGAGAGTAGTTTGTTTAAGA+AGG + chr3_3:80370231-80370250 None:intergenic 30.0%
CTAACATGTTATTCACAATG+TGG - chr3_3:80370600-80370619 Msa0476560:intron 30.0%
GAAAATTATAGAATGGTTGG+AGG - chr3_3:80370642-80370661 Msa0476560:intron 30.0%
TACAAAGATAGGTACCAATT+TGG + chr3_3:80370783-80370802 None:intergenic 30.0%
! ACAAAGTCACGGATTAATTT+GGG + chr3_3:80370813-80370832 None:intergenic 30.0%
! AACAAAGTCACGGATTAATT+TGG + chr3_3:80370814-80370833 None:intergenic 30.0%
!! TTCAAACTAGTCTCTGTTTT+TGG - chr3_3:80370839-80370858 Msa0476560:intron 30.0%
GTGACAAAAACATTAAGACA+GGG + chr3_3:80370885-80370904 None:intergenic 30.0%
TGTGACAAAAACATTAAGAC+AGG + chr3_3:80370886-80370905 None:intergenic 30.0%
CTTGTCAAAAGTTTCACAAT+TGG + chr3_3:80370920-80370939 None:intergenic 30.0%
! AGTGTTTCACGAATTGTTTT+TGG - chr3_3:80371098-80371117 Msa0476560:intron 30.0%
! TAAGAGAAATGCTACTTGTA+GGG + chr3_3:80371230-80371249 None:intergenic 30.0%
ACATGTAAGTTCCATACTTA+AGG - chr3_3:80371308-80371327 Msa0476560:intron 30.0%
GCCATTTGATTGAAATCAAA+TGG - chr3_3:80371432-80371451 Msa0476560:intron 30.0%
! GATGATTGAAATTTTCTTGC+AGG - chr3_3:80371512-80371531 Msa0476560:intron 30.0%
GTAGAAAATATTTGAGTAGC+TGG - chr3_3:80371564-80371583 Msa0476560:intron 30.0%
CGTAGATAGTTAGATTCTAT+TGG + chr3_3:80371603-80371622 None:intergenic 30.0%
TTACTTCTTCACAGAACAAA+TGG - chr3_3:80371997-80372016 Msa0476560:CDS 30.0%
TTAAATGAACATACATGCAG+AGG + chr3_3:80372098-80372117 None:intergenic 30.0%
AAATAGTACGAGAATTCAAG+GGG + chr3_3:80372243-80372262 None:intergenic 30.0%
TAGAAAATGGCCGTTATGAA+CGG - chr3_3:80370020-80370039 Msa0476560:three_prime_UTR 35.0%
! TGCAACTTTTACTAACCTGT+AGG + chr3_3:80370280-80370299 None:intergenic 35.0%
GAATGAGTAAACCACCAAAT+TGG - chr3_3:80370766-80370785 Msa0476560:intron 35.0%
AAAGATAGGTACCAATTTGG+TGG + chr3_3:80370780-80370799 None:intergenic 35.0%
TTGGCAAAAGTTTCTCGATT+CGG - chr3_3:80370858-80370877 Msa0476560:intron 35.0%
TACAAAGATAGGGACCAATT+TGG - chr3_3:80370993-80371012 Msa0476560:intron 35.0%
CTAAGAGTAAACCACCAAAT+TGG + chr3_3:80371010-80371029 None:intergenic 35.0%
! ATTTGGTGGTTTACTCTTAG+TGG - chr3_3:80371010-80371029 Msa0476560:intron 35.0%
TTCCACTTTAGTGGAATACA+TGG - chr3_3:80371131-80371150 Msa0476560:intron 35.0%
TCCACTTTAGTGGAATACAT+GGG - chr3_3:80371132-80371151 Msa0476560:intron 35.0%
GTGGTTACACAAGAATTACA+AGG - chr3_3:80371154-80371173 Msa0476560:intron 35.0%
ACACAAGAATTACAAGGTGA+AGG - chr3_3:80371160-80371179 Msa0476560:intron 35.0%
! CTAAGAGAAATGCTACTTGT+AGG + chr3_3:80371231-80371250 None:intergenic 35.0%
! AGAAAAATGGGATGCTTTTG+AGG - chr3_3:80371249-80371268 Msa0476560:intron 35.0%
ATTCAAATACGGGTCACATA+CGG + chr3_3:80371808-80371827 None:intergenic 35.0%
CACGGAATACATTCAAATAC+GGG + chr3_3:80371818-80371837 None:intergenic 35.0%
CCACGGAATACATTCAAATA+CGG + chr3_3:80371819-80371838 None:intergenic 35.0%
CGTATTTGAATGTATTCCGT+GGG - chr3_3:80371817-80371836 Msa0476560:CDS 35.0%
! GATGTTCTAATTTGCAGAAG+TGG + chr3_3:80372057-80372076 None:intergenic 35.0%
TTCACAGTTATCATAGTCCT+AGG - chr3_3:80372136-80372155 Msa0476560:CDS 35.0%
GGCAAACACAAATAAAAGGA+AGG + chr3_3:80372300-80372319 None:intergenic 35.0%
!!! TTTGAACGTGGCTTGTTTTA+AGG + chr3_3:80369897-80369916 None:intergenic 35.0%
TAGAAAATGGCCGTTATGAA+CGG - chr3_3:80370020-80370039 Msa0476560:three_prime_UTR 35.0%
! TGCAACTTTTACTAACCTGT+AGG + chr3_3:80370280-80370299 None:intergenic 35.0%
GAATGAGTAAACCACCAAAT+TGG - chr3_3:80370766-80370785 Msa0476560:intron 35.0%
AAAGATAGGTACCAATTTGG+TGG + chr3_3:80370780-80370799 None:intergenic 35.0%
TTGGCAAAAGTTTCTCGATT+CGG - chr3_3:80370858-80370877 Msa0476560:intron 35.0%
TACAAAGATAGGGACCAATT+TGG - chr3_3:80370993-80371012 Msa0476560:intron 35.0%
CTAAGAGTAAACCACCAAAT+TGG + chr3_3:80371010-80371029 None:intergenic 35.0%
! ATTTGGTGGTTTACTCTTAG+TGG - chr3_3:80371010-80371029 Msa0476560:intron 35.0%
TTCCACTTTAGTGGAATACA+TGG - chr3_3:80371131-80371150 Msa0476560:intron 35.0%
TCCACTTTAGTGGAATACAT+GGG - chr3_3:80371132-80371151 Msa0476560:intron 35.0%
GTGGTTACACAAGAATTACA+AGG - chr3_3:80371154-80371173 Msa0476560:intron 35.0%
ACACAAGAATTACAAGGTGA+AGG - chr3_3:80371160-80371179 Msa0476560:intron 35.0%
! CTAAGAGAAATGCTACTTGT+AGG + chr3_3:80371231-80371250 None:intergenic 35.0%
! AGAAAAATGGGATGCTTTTG+AGG - chr3_3:80371249-80371268 Msa0476560:intron 35.0%
ATTCAAATACGGGTCACATA+CGG + chr3_3:80371808-80371827 None:intergenic 35.0%
CACGGAATACATTCAAATAC+GGG + chr3_3:80371818-80371837 None:intergenic 35.0%
CCACGGAATACATTCAAATA+CGG + chr3_3:80371819-80371838 None:intergenic 35.0%
CGTATTTGAATGTATTCCGT+GGG - chr3_3:80371817-80371836 Msa0476560:CDS 35.0%
! GATGTTCTAATTTGCAGAAG+TGG + chr3_3:80372057-80372076 None:intergenic 35.0%
TTCACAGTTATCATAGTCCT+AGG - chr3_3:80372136-80372155 Msa0476560:CDS 35.0%
GGCAAACACAAATAAAAGGA+AGG + chr3_3:80372300-80372319 None:intergenic 35.0%
!! CACAGCTGTATTTTTGAACG+TGG + chr3_3:80369909-80369928 None:intergenic 40.0%
CACGTTCAAAAATACAGCTG+TGG - chr3_3:80369907-80369926 Msa0476560:three_prime_UTR 40.0%
TCAAAAATACAGCTGTGGTG+TGG - chr3_3:80369912-80369931 Msa0476560:three_prime_UTR 40.0%
CTTCTTCGTTTCTGTATCAG+TGG + chr3_3:80370063-80370082 None:intergenic 40.0%
! AGAAGAACGTCTCGTTTTGT+TGG - chr3_3:80370078-80370097 Msa0476560:three_prime_UTR 40.0%
!! GAAGAACGTCTCGTTTTGTT+GGG - chr3_3:80370079-80370098 Msa0476560:three_prime_UTR 40.0%
!! AAGAACGTCTCGTTTTGTTG+GGG - chr3_3:80370080-80370099 Msa0476560:three_prime_UTR 40.0%
TGAGAAAGGGGAATGCTAAT+GGG + chr3_3:80370118-80370137 None:intergenic 40.0%
TTGAGAAAGGGGAATGCTAA+TGG + chr3_3:80370119-80370138 None:intergenic 40.0%
TATGCTTCGTCTACCAGATT+CGG - chr3_3:80370353-80370372 Msa0476560:CDS 40.0%
GTAACTACAGGAACAGTAGT+AGG - chr3_3:80370380-80370399 Msa0476560:CDS 40.0%
!! AATTTTGCCGCTGTTTTACC+TGG - chr3_3:80370421-80370440 Msa0476560:intron 40.0%
TTTGTTGAAATGCAAGGACG+TGG - chr3_3:80370732-80370751 Msa0476560:intron 40.0%
TTGTTGAAATGCAAGGACGT+GGG - chr3_3:80370733-80370752 Msa0476560:intron 40.0%
TGGGAGTAGCTTACAAAGAT+AGG + chr3_3:80370794-80370813 None:intergenic 40.0%
TGAGAGAGGCTTACAAAGAT+AGG - chr3_3:80370982-80371001 Msa0476560:intron 40.0%
GAGAGAGGCTTACAAAGATA+GGG - chr3_3:80370983-80371002 Msa0476560:intron 40.0%
AAAGATAGGGACCAATTTGG+TGG - chr3_3:80370996-80371015 Msa0476560:intron 40.0%
!!! CACGAATTGTTTTTGGTCAC+TGG - chr3_3:80371105-80371124 Msa0476560:intron 40.0%
ACCCATGTATTCCACTAAAG+TGG + chr3_3:80371136-80371155 None:intergenic 40.0%
ACTTTAGTGGAATACATGGG+TGG - chr3_3:80371135-80371154 Msa0476560:intron 40.0%
!! AAAATGGGATGCTTTTGAGG+TGG - chr3_3:80371252-80371271 Msa0476560:intron 40.0%
TTGAGGTGGTTGTGTTGAAA+AGG - chr3_3:80371266-80371285 Msa0476560:intron 40.0%
TGAGGTGGTTGTGTTGAAAA+GGG - chr3_3:80371267-80371286 Msa0476560:intron 40.0%
TAAGTTCCATACTTAAGGCC+AGG - chr3_3:80371313-80371332 Msa0476560:intron 40.0%
AAGTTCCATACTTAAGGCCA+GGG - chr3_3:80371314-80371333 Msa0476560:intron 40.0%
! TAGGTTGGATGCTATTAGAG+AGG - chr3_3:80371362-80371381 Msa0476560:intron 40.0%
AGGTTGGATGCTATTAGAGA+GGG - chr3_3:80371363-80371382 Msa0476560:intron 40.0%
ACCTAGATTCTCTACGGTTA+GGG - chr3_3:80371386-80371405 Msa0476560:intron 40.0%
GAATCCTATCGTCAATGCAT+TGG - chr3_3:80371408-80371427 Msa0476560:intron 40.0%
TTTGAGTAGCTGGATGCAAT+TGG - chr3_3:80371574-80371593 Msa0476560:intron 40.0%
CTTCACGTTTCTTCACTTCT+CGG - chr3_3:80371665-80371684 Msa0476560:CDS 40.0%
CCGTATTTGAATGTATTCCG+TGG - chr3_3:80371816-80371835 Msa0476560:CDS 40.0%
AGAACAAGGAATGCAAGGAT+GGG + chr3_3:80371876-80371895 None:intergenic 40.0%
CATTCAGAACAAGGAATGCA+AGG + chr3_3:80371881-80371900 None:intergenic 40.0%
!! TAGTGAAGGCATTCAGAACA+AGG + chr3_3:80371890-80371909 None:intergenic 40.0%
TGCTTAGATTGTTCTGTGAC+TGG + chr3_3:80371942-80371961 None:intergenic 40.0%
GTCACAGAACAATCTAAGCA+AGG - chr3_3:80371942-80371961 Msa0476560:CDS 40.0%
GTTCTGTGAAGAAGTAACGT+CGG + chr3_3:80371994-80372013 None:intergenic 40.0%
CTTCACAGAACAAATGGATG+AGG - chr3_3:80372003-80372022 Msa0476560:CDS 40.0%
! GTTCTAATTTGCAGAAGTGG+AGG + chr3_3:80372054-80372073 None:intergenic 40.0%
!! CACAGCTGTATTTTTGAACG+TGG + chr3_3:80369909-80369928 None:intergenic 40.0%
CACGTTCAAAAATACAGCTG+TGG - chr3_3:80369907-80369926 Msa0476560:three_prime_UTR 40.0%
TCAAAAATACAGCTGTGGTG+TGG - chr3_3:80369912-80369931 Msa0476560:three_prime_UTR 40.0%
CTTCTTCGTTTCTGTATCAG+TGG + chr3_3:80370063-80370082 None:intergenic 40.0%
! AGAAGAACGTCTCGTTTTGT+TGG - chr3_3:80370078-80370097 Msa0476560:three_prime_UTR 40.0%
!! GAAGAACGTCTCGTTTTGTT+GGG - chr3_3:80370079-80370098 Msa0476560:three_prime_UTR 40.0%
!! AAGAACGTCTCGTTTTGTTG+GGG - chr3_3:80370080-80370099 Msa0476560:three_prime_UTR 40.0%
TGAGAAAGGGGAATGCTAAT+GGG + chr3_3:80370118-80370137 None:intergenic 40.0%
TTGAGAAAGGGGAATGCTAA+TGG + chr3_3:80370119-80370138 None:intergenic 40.0%
TATGCTTCGTCTACCAGATT+CGG - chr3_3:80370353-80370372 Msa0476560:CDS 40.0%
GTAACTACAGGAACAGTAGT+AGG - chr3_3:80370380-80370399 Msa0476560:CDS 40.0%
!! AATTTTGCCGCTGTTTTACC+TGG - chr3_3:80370421-80370440 Msa0476560:intron 40.0%
TTTGTTGAAATGCAAGGACG+TGG - chr3_3:80370732-80370751 Msa0476560:intron 40.0%
TTGTTGAAATGCAAGGACGT+GGG - chr3_3:80370733-80370752 Msa0476560:intron 40.0%
TGGGAGTAGCTTACAAAGAT+AGG + chr3_3:80370794-80370813 None:intergenic 40.0%
TGAGAGAGGCTTACAAAGAT+AGG - chr3_3:80370982-80371001 Msa0476560:intron 40.0%
GAGAGAGGCTTACAAAGATA+GGG - chr3_3:80370983-80371002 Msa0476560:intron 40.0%
AAAGATAGGGACCAATTTGG+TGG - chr3_3:80370996-80371015 Msa0476560:intron 40.0%
!!! CACGAATTGTTTTTGGTCAC+TGG - chr3_3:80371105-80371124 Msa0476560:intron 40.0%
ACCCATGTATTCCACTAAAG+TGG + chr3_3:80371136-80371155 None:intergenic 40.0%
ACTTTAGTGGAATACATGGG+TGG - chr3_3:80371135-80371154 Msa0476560:intron 40.0%
!! AAAATGGGATGCTTTTGAGG+TGG - chr3_3:80371252-80371271 Msa0476560:intron 40.0%
TTGAGGTGGTTGTGTTGAAA+AGG - chr3_3:80371266-80371285 Msa0476560:intron 40.0%
TGAGGTGGTTGTGTTGAAAA+GGG - chr3_3:80371267-80371286 Msa0476560:intron 40.0%
TAAGTTCCATACTTAAGGCC+AGG - chr3_3:80371313-80371332 Msa0476560:intron 40.0%
AAGTTCCATACTTAAGGCCA+GGG - chr3_3:80371314-80371333 Msa0476560:intron 40.0%
! TAGGTTGGATGCTATTAGAG+AGG - chr3_3:80371362-80371381 Msa0476560:intron 40.0%
AGGTTGGATGCTATTAGAGA+GGG - chr3_3:80371363-80371382 Msa0476560:intron 40.0%
ACCTAGATTCTCTACGGTTA+GGG - chr3_3:80371386-80371405 Msa0476560:intron 40.0%
GAATCCTATCGTCAATGCAT+TGG - chr3_3:80371408-80371427 Msa0476560:intron 40.0%
TTTGAGTAGCTGGATGCAAT+TGG - chr3_3:80371574-80371593 Msa0476560:intron 40.0%
CTTCACGTTTCTTCACTTCT+CGG - chr3_3:80371665-80371684 Msa0476560:CDS 40.0%
CCGTATTTGAATGTATTCCG+TGG - chr3_3:80371816-80371835 Msa0476560:CDS 40.0%
AGAACAAGGAATGCAAGGAT+GGG + chr3_3:80371876-80371895 None:intergenic 40.0%
CATTCAGAACAAGGAATGCA+AGG + chr3_3:80371881-80371900 None:intergenic 40.0%
!! TAGTGAAGGCATTCAGAACA+AGG + chr3_3:80371890-80371909 None:intergenic 40.0%
TGCTTAGATTGTTCTGTGAC+TGG + chr3_3:80371942-80371961 None:intergenic 40.0%
GTCACAGAACAATCTAAGCA+AGG - chr3_3:80371942-80371961 Msa0476560:CDS 40.0%
GTTCTGTGAAGAAGTAACGT+CGG + chr3_3:80371994-80372013 None:intergenic 40.0%
CTTCACAGAACAAATGGATG+AGG - chr3_3:80372003-80372022 Msa0476560:CDS 40.0%
! GTTCTAATTTGCAGAAGTGG+AGG + chr3_3:80372054-80372073 None:intergenic 40.0%
CTTCGTTTCTGTATCAGTGG+TGG + chr3_3:80370060-80370079 None:intergenic 45.0%
GAGAAAGGGGAATGCTAATG+GGG + chr3_3:80370117-80370136 None:intergenic 45.0%
AGATGGGGGATTTGAGAAAG+GGG + chr3_3:80370130-80370149 None:intergenic 45.0%
GAGATGGGGGATTTGAGAAA+GGG + chr3_3:80370131-80370150 None:intergenic 45.0%
AATGGATGGAGGGGAGAAAT+TGG + chr3_3:80370153-80370172 None:intergenic 45.0%
! ATTATCGACGGCGTTGGAAA+TGG + chr3_3:80370171-80370190 None:intergenic 45.0%
AGCTAAGGAGTGGAGAAGTT+TGG + chr3_3:80370198-80370217 None:intergenic 45.0%
!!! GGTTTTGAGAAGCTAAGGAG+TGG + chr3_3:80370208-80370227 None:intergenic 45.0%
!!! GAAGGGGTTTTGAGAAGCTA+AGG + chr3_3:80370213-80370232 None:intergenic 45.0%
GCACGTGTTATGGAATTGAG+AGG + chr3_3:80370258-80370277 None:intergenic 45.0%
ATTCCATAACACGTGCCTAC+AGG - chr3_3:80370262-80370281 Msa0476560:CDS 45.0%
TAACCTGTAGGCACGTGTTA+TGG + chr3_3:80370268-80370287 None:intergenic 45.0%
TGTAGTTACTGCACCGAATC+TGG + chr3_3:80370369-80370388 None:intergenic 45.0%
!! AGATTCGGTGCAGTAACTAC+AGG - chr3_3:80370368-80370387 Msa0476560:CDS 45.0%
ACTACAGGAACAGTAGTAGG+TGG - chr3_3:80370383-80370402 Msa0476560:CDS 45.0%
CTACAGGAACAGTAGTAGGT+GGG - chr3_3:80370384-80370403 Msa0476560:CDS 45.0%
GGAATCACCAGGTAAAACAG+CGG + chr3_3:80370431-80370450 None:intergenic 45.0%
! TGTTTTACCTGGTGATTCCG+TGG - chr3_3:80370432-80370451 Msa0476560:intron 45.0%
AAACCAGGTAAGAACAAGCC+TGG + chr3_3:80370521-80370540 None:intergenic 45.0%
AGAAATGTGACTGACCTGAG+AGG + chr3_3:80370571-80370590 None:intergenic 45.0%
GATGCACTGTTATCCACTCA+TGG + chr3_3:80370694-80370713 None:intergenic 45.0%
TGTTGAAATGCAAGGACGTG+GGG - chr3_3:80370734-80370753 Msa0476560:intron 45.0%
CACTGGATCTTCCACTTTAG+TGG - chr3_3:80371122-80371141 Msa0476560:intron 45.0%
!! CAATTCCCTGGCCTTAAGTA+TGG + chr3_3:80371322-80371341 None:intergenic 45.0%
TTAAGGCCAGGGAATTGCAA+TGG - chr3_3:80371325-80371344 Msa0476560:intron 45.0%
TAAGGCCAGGGAATTGCAAT+GGG - chr3_3:80371326-80371345 Msa0476560:intron 45.0%
!! AATGGGAGGTGTTGGATTGT+AGG - chr3_3:80371343-80371362 Msa0476560:intron 45.0%
AGAGGGACCTAGATTCTCTA+CGG - chr3_3:80371380-80371399 Msa0476560:intron 45.0%
GACCTAGATTCTCTACGGTT+AGG - chr3_3:80371385-80371404 Msa0476560:intron 45.0%
TCCCTAACCGTAGAGAATCT+AGG + chr3_3:80371390-80371409 None:intergenic 45.0%
GGATTCCCTAGATCAGATAG+TGG + chr3_3:80371538-80371557 None:intergenic 45.0%
CAGAACAAGGAATGCAAGGA+TGG + chr3_3:80371877-80371896 None:intergenic 45.0%
TGTGAAGAAGTAACGTCGGT+AGG + chr3_3:80371990-80372009 None:intergenic 45.0%
CACAGAACAAATGGATGAGG+CGG - chr3_3:80372006-80372025 Msa0476560:CDS 45.0%
! GCTCGAAAATTGAGTTGCCT+AGG + chr3_3:80372156-80372175 None:intergenic 45.0%
CTTCGTTTCTGTATCAGTGG+TGG + chr3_3:80370060-80370079 None:intergenic 45.0%
GAGAAAGGGGAATGCTAATG+GGG + chr3_3:80370117-80370136 None:intergenic 45.0%
AGATGGGGGATTTGAGAAAG+GGG + chr3_3:80370130-80370149 None:intergenic 45.0%
GAGATGGGGGATTTGAGAAA+GGG + chr3_3:80370131-80370150 None:intergenic 45.0%
AATGGATGGAGGGGAGAAAT+TGG + chr3_3:80370153-80370172 None:intergenic 45.0%
! ATTATCGACGGCGTTGGAAA+TGG + chr3_3:80370171-80370190 None:intergenic 45.0%
AGCTAAGGAGTGGAGAAGTT+TGG + chr3_3:80370198-80370217 None:intergenic 45.0%
!!! GGTTTTGAGAAGCTAAGGAG+TGG + chr3_3:80370208-80370227 None:intergenic 45.0%
!!! GAAGGGGTTTTGAGAAGCTA+AGG + chr3_3:80370213-80370232 None:intergenic 45.0%
GCACGTGTTATGGAATTGAG+AGG + chr3_3:80370258-80370277 None:intergenic 45.0%
ATTCCATAACACGTGCCTAC+AGG - chr3_3:80370262-80370281 Msa0476560:CDS 45.0%
TAACCTGTAGGCACGTGTTA+TGG + chr3_3:80370268-80370287 None:intergenic 45.0%
TGTAGTTACTGCACCGAATC+TGG + chr3_3:80370369-80370388 None:intergenic 45.0%
!! AGATTCGGTGCAGTAACTAC+AGG - chr3_3:80370368-80370387 Msa0476560:CDS 45.0%
ACTACAGGAACAGTAGTAGG+TGG - chr3_3:80370383-80370402 Msa0476560:CDS 45.0%
CTACAGGAACAGTAGTAGGT+GGG - chr3_3:80370384-80370403 Msa0476560:CDS 45.0%
GGAATCACCAGGTAAAACAG+CGG + chr3_3:80370431-80370450 None:intergenic 45.0%
! TGTTTTACCTGGTGATTCCG+TGG - chr3_3:80370432-80370451 Msa0476560:intron 45.0%
AAACCAGGTAAGAACAAGCC+TGG + chr3_3:80370521-80370540 None:intergenic 45.0%
AGAAATGTGACTGACCTGAG+AGG + chr3_3:80370571-80370590 None:intergenic 45.0%
GATGCACTGTTATCCACTCA+TGG + chr3_3:80370694-80370713 None:intergenic 45.0%
TGTTGAAATGCAAGGACGTG+GGG - chr3_3:80370734-80370753 Msa0476560:intron 45.0%
CACTGGATCTTCCACTTTAG+TGG - chr3_3:80371122-80371141 Msa0476560:intron 45.0%
!! CAATTCCCTGGCCTTAAGTA+TGG + chr3_3:80371322-80371341 None:intergenic 45.0%
TTAAGGCCAGGGAATTGCAA+TGG - chr3_3:80371325-80371344 Msa0476560:intron 45.0%
TAAGGCCAGGGAATTGCAAT+GGG - chr3_3:80371326-80371345 Msa0476560:intron 45.0%
!! AATGGGAGGTGTTGGATTGT+AGG - chr3_3:80371343-80371362 Msa0476560:intron 45.0%
AGAGGGACCTAGATTCTCTA+CGG - chr3_3:80371380-80371399 Msa0476560:intron 45.0%
GACCTAGATTCTCTACGGTT+AGG - chr3_3:80371385-80371404 Msa0476560:intron 45.0%
TCCCTAACCGTAGAGAATCT+AGG + chr3_3:80371390-80371409 None:intergenic 45.0%
GGATTCCCTAGATCAGATAG+TGG + chr3_3:80371538-80371557 None:intergenic 45.0%
CAGAACAAGGAATGCAAGGA+TGG + chr3_3:80371877-80371896 None:intergenic 45.0%
TGTGAAGAAGTAACGTCGGT+AGG + chr3_3:80371990-80372009 None:intergenic 45.0%
CACAGAACAAATGGATGAGG+CGG - chr3_3:80372006-80372025 Msa0476560:CDS 45.0%
! GCTCGAAAATTGAGTTGCCT+AGG + chr3_3:80372156-80372175 None:intergenic 45.0%
CGGAGCTCAGACAGGATAAT+GGG + chr3_3:80369980-80369999 None:intergenic 50.0%
ACGGAGCTCAGACAGGATAA+TGG + chr3_3:80369981-80370000 None:intergenic 50.0%
CGAGTCGCAACCGTTCATAA+CGG + chr3_3:80370033-80370052 None:intergenic 50.0%
GGAGATGGGGGATTTGAGAA+AGG + chr3_3:80370132-80370151 None:intergenic 50.0%
AGGGGAGAAATTGGAGATGG+GGG + chr3_3:80370144-80370163 None:intergenic 50.0%
GAGGGGAGAAATTGGAGATG+GGG + chr3_3:80370145-80370164 None:intergenic 50.0%
GGAGGGGAGAAATTGGAGAT+GGG + chr3_3:80370146-80370165 None:intergenic 50.0%
TGGAGGGGAGAAATTGGAGA+TGG + chr3_3:80370147-80370166 None:intergenic 50.0%
GGAACAATTATCGACGGCGT+TGG + chr3_3:80370177-80370196 None:intergenic 50.0%
! TTGCCAGGCTTGTTCTTACC+TGG - chr3_3:80370515-80370534 Msa0476560:intron 50.0%
CAAGGACGTGGGGTTATTAG+TGG - chr3_3:80370744-80370763 Msa0476560:intron 50.0%
!! GGCAGAGACTGATTTGAGAG+AGG - chr3_3:80370968-80370987 Msa0476560:intron 50.0%
! GGAATTGCAATGGGAGGTGT+TGG - chr3_3:80371335-80371354 Msa0476560:intron 50.0%
!! GGAGGTGTTGGATTGTAGGT+TGG - chr3_3:80371347-80371366 Msa0476560:intron 50.0%
! GGCTCCAATGCATTGACGAT+AGG + chr3_3:80371415-80371434 None:intergenic 50.0%
TGCAGGCCACTATCTGATCT+AGG - chr3_3:80371529-80371548 Msa0476560:intron 50.0%
GCAGGCCACTATCTGATCTA+GGG - chr3_3:80371530-80371549 Msa0476560:intron 50.0%
GAGTAGCTGGATGCAATTGG+TGG - chr3_3:80371577-80371596 Msa0476560:intron 50.0%
AAATGGATGAGGCGGCTTCA+AGG - chr3_3:80372014-80372033 Msa0476560:CDS 50.0%
AATGGATGAGGCGGCTTCAA+GGG - chr3_3:80372015-80372034 Msa0476560:CDS 50.0%
CGGAGCTCAGACAGGATAAT+GGG + chr3_3:80369980-80369999 None:intergenic 50.0%
ACGGAGCTCAGACAGGATAA+TGG + chr3_3:80369981-80370000 None:intergenic 50.0%
CGAGTCGCAACCGTTCATAA+CGG + chr3_3:80370033-80370052 None:intergenic 50.0%
GGAGATGGGGGATTTGAGAA+AGG + chr3_3:80370132-80370151 None:intergenic 50.0%
AGGGGAGAAATTGGAGATGG+GGG + chr3_3:80370144-80370163 None:intergenic 50.0%
GAGGGGAGAAATTGGAGATG+GGG + chr3_3:80370145-80370164 None:intergenic 50.0%
GGAGGGGAGAAATTGGAGAT+GGG + chr3_3:80370146-80370165 None:intergenic 50.0%
TGGAGGGGAGAAATTGGAGA+TGG + chr3_3:80370147-80370166 None:intergenic 50.0%
GGAACAATTATCGACGGCGT+TGG + chr3_3:80370177-80370196 None:intergenic 50.0%
! TTGCCAGGCTTGTTCTTACC+TGG - chr3_3:80370515-80370534 Msa0476560:intron 50.0%
CAAGGACGTGGGGTTATTAG+TGG - chr3_3:80370744-80370763 Msa0476560:intron 50.0%
!! GGCAGAGACTGATTTGAGAG+AGG - chr3_3:80370968-80370987 Msa0476560:intron 50.0%
! GGAATTGCAATGGGAGGTGT+TGG - chr3_3:80371335-80371354 Msa0476560:intron 50.0%
!! GGAGGTGTTGGATTGTAGGT+TGG - chr3_3:80371347-80371366 Msa0476560:intron 50.0%
! GGCTCCAATGCATTGACGAT+AGG + chr3_3:80371415-80371434 None:intergenic 50.0%
TGCAGGCCACTATCTGATCT+AGG - chr3_3:80371529-80371548 Msa0476560:intron 50.0%
GCAGGCCACTATCTGATCTA+GGG - chr3_3:80371530-80371549 Msa0476560:intron 50.0%
GAGTAGCTGGATGCAATTGG+TGG - chr3_3:80371577-80371596 Msa0476560:intron 50.0%
AAATGGATGAGGCGGCTTCA+AGG - chr3_3:80372014-80372033 Msa0476560:CDS 50.0%
AATGGATGAGGCGGCTTCAA+GGG - chr3_3:80372015-80372034 Msa0476560:CDS 50.0%
GAACTCTACGGAGCTCAGAC+AGG + chr3_3:80369988-80370007 None:intergenic 55.0%
! GGCGTTGGAAATGGATGGAG+GGG + chr3_3:80370162-80370181 None:intergenic 55.0%
! CGGCGTTGGAAATGGATGGA+GGG + chr3_3:80370163-80370182 None:intergenic 55.0%
! ACGGCGTTGGAAATGGATGG+AGG + chr3_3:80370164-80370183 None:intergenic 55.0%
! TCGACGGCGTTGGAAATGGA+TGG + chr3_3:80370167-80370186 None:intergenic 55.0%
TTACCTGGTGATTCCGTGGC+TGG - chr3_3:80370436-80370455 Msa0476560:intron 55.0%
!! TGATTCCGTGGCTGGCTTAG+TGG - chr3_3:80370444-80370463 Msa0476560:intron 55.0%
! GCTGGCTTAGTGGTGGCTAA+TGG - chr3_3:80370454-80370473 Msa0476560:intron 55.0%
ACAACACCTTGCTCGTTGCC+AGG - chr3_3:80370500-80370519 Msa0476560:intron 55.0%
AACAAGCCTGGCAACGAGCA+AGG + chr3_3:80370509-80370528 None:intergenic 55.0%
!! AGGAGGAGCGTTAGGAAACC+AGG + chr3_3:80370536-80370555 None:intergenic 55.0%
TGACCTGAGAGGAGCAACGA+TGG + chr3_3:80370560-80370579 None:intergenic 55.0%
CACCTCCCATTGCAATTCCC+TGG + chr3_3:80371334-80371353 None:intergenic 55.0%
AGAGATCCAGTCCACCGAGA+GGG + chr3_3:80371851-80371870 None:intergenic 55.0%
TGCAGCAGCAGTGCTAGTGA+AGG + chr3_3:80371904-80371923 None:intergenic 55.0%
CTGTGACTGGAAGCTCAGCA+GGG + chr3_3:80371929-80371948 None:intergenic 55.0%
TCTGTGACTGGAAGCTCAGC+AGG + chr3_3:80371930-80371949 None:intergenic 55.0%
ATGAGGCGGCTTCAAGGGAT+CGG - chr3_3:80372020-80372039 Msa0476560:CDS 55.0%
GAACTCTACGGAGCTCAGAC+AGG + chr3_3:80369988-80370007 None:intergenic 55.0%
! GGCGTTGGAAATGGATGGAG+GGG + chr3_3:80370162-80370181 None:intergenic 55.0%
! CGGCGTTGGAAATGGATGGA+GGG + chr3_3:80370163-80370182 None:intergenic 55.0%
! ACGGCGTTGGAAATGGATGG+AGG + chr3_3:80370164-80370183 None:intergenic 55.0%
! TCGACGGCGTTGGAAATGGA+TGG + chr3_3:80370167-80370186 None:intergenic 55.0%
TTACCTGGTGATTCCGTGGC+TGG - chr3_3:80370436-80370455 Msa0476560:intron 55.0%
!! TGATTCCGTGGCTGGCTTAG+TGG - chr3_3:80370444-80370463 Msa0476560:intron 55.0%
! GCTGGCTTAGTGGTGGCTAA+TGG - chr3_3:80370454-80370473 Msa0476560:intron 55.0%
ACAACACCTTGCTCGTTGCC+AGG - chr3_3:80370500-80370519 Msa0476560:intron 55.0%
AACAAGCCTGGCAACGAGCA+AGG + chr3_3:80370509-80370528 None:intergenic 55.0%
!! AGGAGGAGCGTTAGGAAACC+AGG + chr3_3:80370536-80370555 None:intergenic 55.0%
TGACCTGAGAGGAGCAACGA+TGG + chr3_3:80370560-80370579 None:intergenic 55.0%
CACCTCCCATTGCAATTCCC+TGG + chr3_3:80371334-80371353 None:intergenic 55.0%
AGAGATCCAGTCCACCGAGA+GGG + chr3_3:80371851-80371870 None:intergenic 55.0%
TGCAGCAGCAGTGCTAGTGA+AGG + chr3_3:80371904-80371923 None:intergenic 55.0%
CTGTGACTGGAAGCTCAGCA+GGG + chr3_3:80371929-80371948 None:intergenic 55.0%
TCTGTGACTGGAAGCTCAGC+AGG + chr3_3:80371930-80371949 None:intergenic 55.0%
ATGAGGCGGCTTCAAGGGAT+CGG - chr3_3:80372020-80372039 Msa0476560:CDS 55.0%
AAGCCAGCCACGGAATCACC+AGG + chr3_3:80370442-80370461 None:intergenic 60.0%
!! TTCCGTGGCTGGCTTAGTGG+TGG - chr3_3:80370447-80370466 Msa0476560:intron 60.0%
AGCCACCACTAAGCCAGCCA+CGG + chr3_3:80370452-80370471 None:intergenic 60.0%
!! ACGATGGCAGGAGGAGCGTT+AGG + chr3_3:80370544-80370563 None:intergenic 60.0%
AGAGGAGCAACGATGGCAGG+AGG + chr3_3:80370553-80370572 None:intergenic 60.0%
CTGAGAGGAGCAACGATGGC+AGG + chr3_3:80370556-80370575 None:intergenic 60.0%
CTGCCATCGTTGCTCCTCTC+AGG - chr3_3:80370554-80370573 Msa0476560:intron 60.0%
GGCCAGGGAATTGCAATGGG+AGG - chr3_3:80371329-80371348 Msa0476560:intron 60.0%
AGATCCAGTCCACCGAGAGG+GGG + chr3_3:80371849-80371868 None:intergenic 60.0%
GAGATCCAGTCCACCGAGAG+GGG + chr3_3:80371850-80371869 None:intergenic 60.0%
GAGAGATCCAGTCCACCGAG+AGG + chr3_3:80371852-80371871 None:intergenic 60.0%
TGAGGCGGCTTCAAGGGATC+GGG - chr3_3:80372021-80372040 Msa0476560:CDS 60.0%
AAGCCAGCCACGGAATCACC+AGG + chr3_3:80370442-80370461 None:intergenic 60.0%
!! TTCCGTGGCTGGCTTAGTGG+TGG - chr3_3:80370447-80370466 Msa0476560:intron 60.0%
AGCCACCACTAAGCCAGCCA+CGG + chr3_3:80370452-80370471 None:intergenic 60.0%
!! ACGATGGCAGGAGGAGCGTT+AGG + chr3_3:80370544-80370563 None:intergenic 60.0%
AGAGGAGCAACGATGGCAGG+AGG + chr3_3:80370553-80370572 None:intergenic 60.0%
CTGAGAGGAGCAACGATGGC+AGG + chr3_3:80370556-80370575 None:intergenic 60.0%
CTGCCATCGTTGCTCCTCTC+AGG - chr3_3:80370554-80370573 Msa0476560:intron 60.0%
GGCCAGGGAATTGCAATGGG+AGG - chr3_3:80371329-80371348 Msa0476560:intron 60.0%
AGATCCAGTCCACCGAGAGG+GGG + chr3_3:80371849-80371868 None:intergenic 60.0%
GAGATCCAGTCCACCGAGAG+GGG + chr3_3:80371850-80371869 None:intergenic 60.0%
GAGAGATCCAGTCCACCGAG+AGG + chr3_3:80371852-80371871 None:intergenic 60.0%
TGAGGCGGCTTCAAGGGATC+GGG - chr3_3:80372021-80372040 Msa0476560:CDS 60.0%
CGAGAGGGGGGATAAGCCCA+CGG + chr3_3:80371836-80371855 None:intergenic 65.0%
CGTGGGCTTATCCCCCCTCT+CGG - chr3_3:80371834-80371853 Msa0476560:intron 65.0%
TATCCCCCCTCTCGGTGGAC+TGG - chr3_3:80371842-80371861 Msa0476560:intron 65.0%
GATCCAGTCCACCGAGAGGG+GGG + chr3_3:80371848-80371867 None:intergenic 65.0%
CGAGAGGGGGGATAAGCCCA+CGG + chr3_3:80371836-80371855 None:intergenic 65.0%
CGTGGGCTTATCCCCCCTCT+CGG - chr3_3:80371834-80371853 Msa0476560:intron 65.0%
TATCCCCCCTCTCGGTGGAC+TGG - chr3_3:80371842-80371861 Msa0476560:intron 65.0%
GATCCAGTCCACCGAGAGGG+GGG + chr3_3:80371848-80371867 None:intergenic 65.0%
GGGCTTATCCCCCCTCTCGG+TGG - chr3_3:80371837-80371856 Msa0476560:intron 70.0%
GGGCTTATCCCCCCTCTCGG+TGG - chr3_3:80371837-80371856 Msa0476560:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80369896 80372319 80369896 ID=Msa0476560;Name=Msa0476560
chr3_3 mRNA 80369896 80372319 80369896 ID=Msa0476560-mRNA-1;Parent=Msa0476560;Name=Msa0476560-mRNA-1;_AED=0.18;_eAED=0.18;_QI=130|1|1|1|1|1|3|249|243
chr3_3 exon 80369896 80370412 80369896 ID=Msa0476560-mRNA-1:exon:21995;Parent=Msa0476560-mRNA-1
chr3_3 exon 80371640 80371845 80371640 ID=Msa0476560-mRNA-1:exon:21994;Parent=Msa0476560-mRNA-1
chr3_3 exon 80371932 80372319 80371932 ID=Msa0476560-mRNA-1:exon:21993;Parent=Msa0476560-mRNA-1
chr3_3 five_prime_UTR 80372190 80372319 80372190 ID=Msa0476560-mRNA-1:five_prime_utr;Parent=Msa0476560-mRNA-1
chr3_3 CDS 80371932 80372189 80371932 ID=Msa0476560-mRNA-1:cds;Parent=Msa0476560-mRNA-1
chr3_3 CDS 80371640 80371845 80371640 ID=Msa0476560-mRNA-1:cds;Parent=Msa0476560-mRNA-1
chr3_3 CDS 80370145 80370412 80370145 ID=Msa0476560-mRNA-1:cds;Parent=Msa0476560-mRNA-1
chr3_3 three_prime_UTR 80369896 80370144 80369896 ID=Msa0476560-mRNA-1:three_prime_utr;Parent=Msa0476560-mRNA-1
Gene Sequence

>Msa0476560

ATGGCCGTTATGAACGGTTGCGACTCGTCGTCCACCACTGATACAGAAACGAAGAAGAACGTCTCGTTTTGTTGGGGTAATTCTCAATCCCCATTAGCATTCCCCTTTCTCAAATCCCCCATCTCCAATTTCTCCCCTCCATCCATTTCCAACGCCGTCGATAATTGTTCCAAACTTCTCCACTCCTTAGCTTCTCAAAACCCCTTCTTAAACAAACTACTCTCTCTTTCCTCTCAATTCCATAACACGTGCCTACAGATTCGGTGCAGTAACTACAGGAACAGTAGTAGGTGGGTGAGTAATCATCACAATTTTGCCGCTGTTTTACCTGGTGATTCCGTGGCTGGCTTAGTGGTGGCTAATGGACTTAATAATTTCTTGAGTCTTTACAACACCTTGCTCGTTGCCAGGCTTGTTCTTACCTGGTTTCCTAACGCTCCTCCTGCCATCGTTGCTCCTCTCAGCACCGTATGTGACCCGTATTTGAATGTATTCCGTGGGCTTATCCCCCCTCTCGGTGGACTGGATCTCTCTCCCATCCTTGCATTCCTTGTTCTGAATGCCTTCACTAGCACTGCTGCTGCACTCCCTGCTGAGCTTCCAGTCACAGAACAATCTAAGCAAGGTCTTGAAGCAAGATTACAACAACCTACCGACGTTACTTCTTCACAGAACAAATGGATGAGGCGGCTTCAAGGGATCGGGTCAAAGACCTCCACTTCTGCAAATTAG

Protein sequence

>Msa0476560

MAVMNGCDSSSTTDTETKKNVSFCWGNSQSPLAFPFLKSPISNFSPPSISNAVDNCSKLLHSLASQNPFLNKLLSLSSQFHNTCLQIRCSNYRNSSRWVSNHHNFAAVLPGDSVAGLVVANGLNNFLSLYNTLLVARLVLTWFPNAPPAIVAPLSTVCDPYLNVFRGLIPPLGGLDLSPILAFLVLNAFTSTAAALPAELPVTEQSKQGLEARLQQPTDVTSSQNKWMRRLQGIGSKTSTSAN*