AlfalfaGEDB | Msa0211590

M. sativa cultivar zhongmu-4 / Msa0211590

KEGG: K00927
GO: GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006464 GO:0006468 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010319 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019253 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019538 GO:0019637 GO:0019685 GO:0019693 GO:0019752 GO:0030312 GO:0031347 GO:0031967 GO:0031975 GO:0032101 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0036211 GO:0042221 GO:0042866 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043900 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046939 GO:0048046 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0065007 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080134 GO:0090407 GO:0140096 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
PFAM: PF00162.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0211590	XP_003596091.1	99.374	479	3	0	1	479	1	479	0.0	939

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0211590	sp\|Q42961\|PGKH_TOBAC	84.298	484	68	4	1	479	1	481	0.0	800

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0211590	G7IT85	99.374	479	3	0	1	479	1	479	0.0	939

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0211590	-0.826597	2.486577e-54	-8.615850e-47
Msa0001510	Msa0211590	0.926145	7.002668e-91	-8.615850e-47
Msa0001540	Msa0211590	0.810797	9.641536e-51	-8.615850e-47
Msa0001550	Msa0211590	0.866490	2.744821e-65	-8.615850e-47
Msa0002110	Msa0211590	0.919137	6.556225e-87	-8.615850e-47
Msa0002690	Msa0211590	0.937778	1.991230e-98	-8.615850e-47
Msa0002700	Msa0211590	0.929091	1.141338e-92	-8.615850e-47
Msa0003340	Msa0211590	0.848193	7.165341e-60	-8.615850e-47
Msa0004180	Msa0211590	0.942460	6.910464e-102	-8.615850e-47
Msa0005190	Msa0211590	0.806824	6.820164e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0211590	MtrunA17_Chr2g0310601	99.374	479	3	0	1	479	1	479	0.0	939
Msa0211590	MtrunA17_Chr2g0310611	88.089	403	47	1	73	474	89	491	0.0	702
Msa0211590	MtrunA17_Chr2g0310621	85.678	398	57	0	77	474	4	401	0.0	686
Msa0211590	MtrunA17_Chr6g0457691	30.198	404	272	5	78	479	142	537	8.62e-49	178

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0211590	AT1G56190.1	87.472	439	54	1	42	479	40	478	775
Msa0211590	AT3G12780.1	82.438	484	77	4	1	479	1	481	763
Msa0211590	AT1G56190.2	90.123	405	40	0	75	479	1	405	738
Msa0211590	AT1G79550.1	86.181	398	55	0	77	474	4	401	697
Msa0211590	AT1G79550.2	86.181	398	55	0	77	474	4	401	697

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Find 195 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAACCAGCAACAGA+TGG	0.611850	2_1:+53022924	None:intergenic
AAAAGTGTGGGAGATTTGAG+TGG	0.703173	2_1:-53024698	Msa0211590:CDS
AAAATTTACACTAACAAACT+CGG	0.588917	2_1:+53021035	None:intergenic
AAACCTGGCTGTTTGCATCA+GGG	0.584272	2_1:+53022042	None:intergenic
AAACTTATGGCAGCGACTAA+TGG	0.381333	2_1:+53020929	None:intergenic
AAAGGAAGAACGATTGGGTG+TGG	0.584748	2_1:+53025061	None:intergenic
AAAGTTGACATCCTTCTTCT+CGG	0.456222	2_1:-53022230	Msa0211590:CDS
AAATTGTCTTACACGGCGAC+TGG	0.508972	2_1:+53021135	None:intergenic
AAATTTACACTAACAAACTC+GGG	0.584120	2_1:+53021036	None:intergenic
AAATTTGCAGGGAAGGCCAA+AGG	0.578585	2_1:-53023352	Msa0211590:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGAATGAATGAATGTAGA+GGG	+	chr2_1:53020935-53020954	None:intergenic	30.0%
AACTGAATGAATGAATGTAG+AGG	+	chr2_1:53020936-53020955	None:intergenic	30.0%
AAGTGAGTTGTTTGCTTTAA+AGG	-	chr2_1:53021730-53021749	Msa0211590:intron	30.0%
CTGATTTCCATTAACATATC+GGG	+	chr2_1:53021828-53021847	None:intergenic	30.0%
CACCTTAGATTGTAATGTTA+AGG	-	chr2_1:53022134-53022153	Msa0211590:CDS	30.0%
ACCCTTAACATTACAATCTA+AGG	+	chr2_1:53022139-53022158	None:intergenic	30.0%
AGCATTTAGATGATGAAACA+TGG	+	chr2_1:53022183-53022202	None:intergenic	30.0%
ATCATCTAAATGCTTTGCTT+TGG	-	chr2_1:53022189-53022208	Msa0211590:CDS	30.0%
TTATAACAATGCATGTTGGA+TGG	-	chr2_1:53022225-53022244	Msa0211590:CDS	30.0%
ATTTATATCAAGAGTAGGCA+TGG	+	chr2_1:53022475-53022494	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	53020818	53025141	53020818	ID=Msa0211590;Name=Msa0211590
chr2_1	mRNA	53020818	53025141	53020818	ID=Msa0211590-mRNA-1;Parent=Msa0211590;Name=Msa0211590-mRNA-1;_AED=0.33;_eAED=0.33;_QI=190\|1\|1\|1\|1\|1\|6\|325\|479
chr2_1	exon	53020818	53021352	53020818	ID=Msa0211590-mRNA-1:exon:14757;Parent=Msa0211590-mRNA-1
chr2_1	exon	53021778	53021936	53021778	ID=Msa0211590-mRNA-1:exon:14756;Parent=Msa0211590-mRNA-1
chr2_1	exon	53022046	53022363	53022046	ID=Msa0211590-mRNA-1:exon:14755;Parent=Msa0211590-mRNA-1
chr2_1	exon	53022917	53023177	53022917	ID=Msa0211590-mRNA-1:exon:14754;Parent=Msa0211590-mRNA-1
chr2_1	exon	53023287	53023364	53023287	ID=Msa0211590-mRNA-1:exon:14753;Parent=Msa0211590-mRNA-1
chr2_1	exon	53024538	53025141	53024538	ID=Msa0211590-mRNA-1:exon:14752;Parent=Msa0211590-mRNA-1
chr2_1	five_prime_UTR	53024952	53025141	53024952	ID=Msa0211590-mRNA-1:five_prime_utr;Parent=Msa0211590-mRNA-1
chr2_1	CDS	53024538	53024951	53024538	ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1	CDS	53023287	53023364	53023287	ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1	CDS	53022917	53023177	53022917	ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1	CDS	53022046	53022363	53022046	ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1	CDS	53021778	53021936	53021778	ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1	CDS	53021143	53021352	53021143	ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1	three_prime_UTR	53020818	53021142	53020818	ID=Msa0211590-mRNA-1:three_prime_utr;Parent=Msa0211590-mRNA-1

Gene Sequence

>Msa0211590

ATGGCTTCAGCTACAGCCCCCACAACCATCTCACTCCTCCCCACCACTAAATCCTCTTCCCCATCCACCACCCCATCCCCCTCCCGCATCCAACTCTCCTCATTCCTCGGCGCCCGCCCACTCCGCCGACTTGGCTTCGCTGCAGCTGACCCTTTGTTGGCCGTGCAGGTGGCGTCGAAGGTGAGGACAGTAAGCGGGAGAGGAGTAAGAGGAGTGGTGTCGATGGCGAAGAAAAGTGTGGGAGATTTGAGTGGTGCGGAGTTAAAGGGAAAGAAGGTTTTTGTGAGAGCTGACTTGAATGTTCCTCTTGATGATAATCAGAATATTACTGATGATACTAGGATCCGTGCTGCTATTCCAACTATTAAATATCTAATTCAAAATGGTGCTAAAGTCATTCTTTCTAGTCATTTGGGAAGGCCAAAGGGTGTCACTCCCAAATACAGCTTGGCACCTCTTGTTCCCAGGCTCTCTGAACTCATTGGAATTGAGGTTATTAAGGCCGAAGACAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCCCTTCCAGACGGAGGAGTTCTACTTCTCGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCTGAACATGCAAAAAAGCTTGCCGCACTCGCAGATCTGTATGTGAATGATGCATTCGGTACTGCTCACAGGGCCCATGCATCAACAGAGGGAGTCACTAAATATTTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGAACTTGACTACCTTGTTGGGGCAGTATCAAGCCCAAAAAGGCCATTTGCTGCAATTGTGGGTGGTTCTAAGGTCTCATCTAAAATTGGAGTGATTGAGTCACTTCTAGAAAAAGTTGACATCCTTCTTCTCGGTGGAGGAATGATCTTCACATTTTACAAGGCACAAGGTCTTGCAGTTGGTTCATCCCTTGTAGAGGAAGATAAGTTAGATCTTGCTACAACACTAATTGCTAAAGCCAAGGCAAAGGGTGTGTCACTCTTGCTGCCAAGTGATGTGGTGATTGCAGACAAATTCGCCCCTGATGCAAACAGCCAGATCGTGCCAGCATCTGCCATCCCTGATGGTTGGATGGGATTGGACATTGGTCCAGATTCTATTAAAACATTCAATGAAGCATTGGATACCACCCAAACTATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGAACAGAGTCTATTGCAAAGAAGTTGGCCGACCTAAGTGGAAAGGGGGTGACAACTATTATTGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCCGATGTCATGAGCCACATATCCACCGGTGGTGGTGCAAGTTTGGAGCTATTGGAAGGCAAAGAGCTTCCAGGTGTCCTCGCCCTTGATGAAGCCACACCAGTCGCCGTGTAA

Protein sequence

>Msa0211590

MASATAPTTISLLPTTKSSSPSTTPSPSRIQLSSFLGARPLRRLGFAAADPLLAVQVASKVRTVSGRGVRGVVSMAKKSVGDLSGAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLIQNGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELIGIEVIKAEDSIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNDPEHAKKLAALADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGMIFTFYKAQGLAVGSSLVEEDKLDLATTLIAKAKAKGVSLLLPSDVVIADKFAPDANSQIVPASAIPDGWMGLDIGPDSIKTFNEALDTTQTIIWNGPMGVFEFDKFAVGTESIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVLALDEATPVAV*