AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0211590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211590 MtrunA17_Chr2g0310601 99.374 479 3 0 1 479 1 479 0.0 939
Msa0211590 MtrunA17_Chr2g0310611 88.089 403 47 1 73 474 89 491 0.0 702
Msa0211590 MtrunA17_Chr2g0310621 85.678 398 57 0 77 474 4 401 0.0 686
Msa0211590 MtrunA17_Chr6g0457691 30.198 404 272 5 78 479 142 537 8.62e-49 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0211590 AT1G56190.1 87.472 439 54 1 42 479 40 478 0.0 775
Msa0211590 AT3G12780.1 82.438 484 77 4 1 479 1 481 0.0 763
Msa0211590 AT1G56190.2 90.123 405 40 0 75 479 1 405 0.0 738
Msa0211590 AT1G79550.1 86.181 398 55 0 77 474 4 401 0.0 697
Msa0211590 AT1G79550.2 86.181 398 55 0 77 474 4 401 0.0 697

Find 195 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGATTTATTTGAATTTA+TGG 0.071022 2_1:+53020950 None:intergenic
ACTTATTTGAACTTATTTAT+TGG 0.170941 2_1:-53020870 Msa0211590:three_prime_UTR
AAGAGGTGCCAAGCTGTATT+TGG 0.198091 2_1:+53023320 None:intergenic
AGAACGATTGGGTGTGGTTT+GGG 0.198355 2_1:+53025067 None:intergenic
TGGGTGTGGTTTGGGGATTT+TGG 0.203943 2_1:+53025075 None:intergenic
TTTGAGTGGTGCGGAGTTAA+AGG 0.229996 2_1:-53024684 Msa0211590:CDS
GTCCATTCCATATGATAGTT+TGG 0.250786 2_1:+53021822 None:intergenic
CGCTGCAGCTGACCCTTTGT+TGG 0.275215 2_1:-53024792 Msa0211590:CDS
GGGGAGGAGTGAGATGGTTG+TGG 0.281250 2_1:+53024910 None:intergenic
TCTAAGGTCTCATCTAAAAT+TGG 0.286199 2_1:-53022275 Msa0211590:CDS
AAGAACGATTGGGTGTGGTT+TGG 0.299575 2_1:+53025066 None:intergenic
TGCAATTGTGGGTGGTTCTA+AGG 0.307721 2_1:-53022291 Msa0211590:CDS
GGGAGGAGTGAGATGGTTGT+GGG 0.311165 2_1:+53024911 None:intergenic
GGATTATTGACAGGTTATTA+AGG 0.325099 2_1:-53023168 Msa0211590:intron
CACCGGTGGTGGTGCAAGTT+TGG 0.328292 2_1:-53021211 Msa0211590:CDS
ATTAAATATCTAATTCAAAA+TGG 0.335122 2_1:-53024566 Msa0211590:CDS
TCCATTCCATATGATAGTTT+GGG 0.338357 2_1:+53021823 None:intergenic
TGGGGTGGTGGATGGGGAAG+AGG 0.341920 2_1:+53024877 None:intergenic
TAGGAACTTGACTACCTTGT+TGG 0.343922 2_1:-53022344 Msa0211590:CDS
AGGAACTTGACTACCTTGTT+GGG 0.344781 2_1:-53022343 Msa0211590:CDS
AGTCATTCTTTCTAGTCATT+TGG 0.346742 2_1:-53024537 Msa0211590:intron
TGAATTAGATATTTAATAGT+TGG 0.368159 2_1:+53024572 None:intergenic
AAACTTATGGCAGCGACTAA+TGG 0.381333 2_1:+53020929 None:intergenic
CAAACCTGGCTGTTTGCATC+AGG 0.388375 2_1:+53022041 None:intergenic
TTGGAAGGCAAAGAGCTTCC+AGG 0.397132 2_1:-53021183 Msa0211590:CDS
TATTTGGGAGTGACACCCTT+TGG 0.399527 2_1:+53023336 None:intergenic
TATTTGAAGCCATCTGTTGC+TGG 0.401801 2_1:-53022933 Msa0211590:CDS
TCCAATGAGTTCAGAGAGCC+TGG 0.408008 2_1:+53023293 None:intergenic
AGGAGAGTTGGATGCGGGAG+GGG 0.411082 2_1:+53024852 None:intergenic
TCCAATCCCATCCAACCATC+AGG 0.411142 2_1:+53021893 None:intergenic
GGAGGAGTGAGATGGTTGTG+GGG 0.411898 2_1:+53024912 None:intergenic
TGAGGAGAGTTGGATGCGGG+AGG 0.417320 2_1:+53024850 None:intergenic
TGACCCTTTGTTGGCCGTGC+AGG 0.421965 2_1:-53024783 Msa0211590:CDS
TTGAGTGGTGCGGAGTTAAA+GGG 0.422517 2_1:-53024683 Msa0211590:CDS
AGAGGTGCCAAGCTGTATTT+GGG 0.433038 2_1:+53023321 None:intergenic
GCCCGCCCACTCCGCCGACT+TGG 0.433426 2_1:-53024818 Msa0211590:CDS
GAGGAGTGAGATGGTTGTGG+GGG 0.435325 2_1:+53024913 None:intergenic
GGAGAGTTGGATGCGGGAGG+GGG 0.435773 2_1:+53024853 None:intergenic
GAATTTATGGCTTTCAGCCT+AGG 0.440860 2_1:+53020963 None:intergenic
TTCTGGACCAATACTGTCTT+CGG 0.442920 2_1:+53023145 None:intergenic
GGGCAGTATCAAGCCCAAAA+AGG 0.443174 2_1:-53022322 Msa0211590:CDS
GACTCCCTCTGTTGATGCAT+GGG 0.445361 2_1:+53022962 None:intergenic
CGAAGCCAAGTCGGCGGAGT+GGG 0.446914 2_1:+53024813 None:intergenic
TCATCAAGGGCGAGGACACC+TGG 0.447264 2_1:+53021165 None:intergenic
GTAAGCGGGAGAGGAGTAAG+AGG 0.448191 2_1:-53024740 Msa0211590:CDS
ATGCATTCGGTACTGCTCAC+AGG 0.450363 2_1:-53022986 Msa0211590:CDS
TGGTGCAAGTTTGGAGCTAT+TGG 0.450844 2_1:-53021202 Msa0211590:CDS
AGCCAAGTCGGCGGAGTGGG+CGG 0.455059 2_1:+53024816 None:intergenic
AAAGTTGACATCCTTCTTCT+CGG 0.456222 2_1:-53022230 Msa0211590:CDS
TGCCATCCCTGATGGTTGGA+TGG 0.456434 2_1:-53021900 Msa0211590:CDS
GCCAAGTCGGCGGAGTGGGC+GGG 0.460638 2_1:+53024817 None:intergenic
AAGAGGATTTAGTGGTGGGG+AGG 0.466020 2_1:+53024894 None:intergenic
CCCAGGCTCTCTGAACTCAT+TGG 0.467134 2_1:-53023294 Msa0211590:CDS
GTGAGGACAGTAAGCGGGAG+AGG 0.473119 2_1:-53024749 Msa0211590:CDS
TCAGTCTATTGCAAAGAAGT+TGG 0.473203 2_1:-53021334 Msa0211590:intron
TAAAACATTCAATGAAGCAT+TGG 0.477391 2_1:-53021852 Msa0211590:CDS
CGCCGAGGAATGAGGAGAGT+TGG 0.479460 2_1:+53024840 None:intergenic
CTCTGAACTCATTGGAATTG+AGG 0.480026 2_1:-53023286 Msa0211590:intron
TGGGGAAGAGGATTTAGTGG+TGG 0.482996 2_1:+53024889 None:intergenic
ATACCACCCAAACTATCATA+TGG 0.484602 2_1:-53021829 Msa0211590:CDS
CCCTGATGGTTGGATGGGAT+TGG 0.487908 2_1:-53021894 Msa0211590:CDS
GCTTGGCACCTCTTGTTCCC+AGG 0.490709 2_1:-53023311 Msa0211590:CDS
GAACGATTGGGTGTGGTTTG+GGG 0.490748 2_1:+53025068 None:intergenic
AGAAGTAGAACTCCTCCGTC+TGG 0.491568 2_1:+53023098 None:intergenic
CGACTGGTGTGGCTTCATCA+AGG 0.491924 2_1:+53021151 None:intergenic
TCATTCCTCCACCGAGAAGA+AGG 0.493393 2_1:+53022219 None:intergenic
CCACCCACAATTGCAGCAAA+TGG 0.496096 2_1:+53022299 None:intergenic
CGCCCCTGATGCAAACAGCC+AGG 0.498814 2_1:-53022045 Msa0211590:intron
GAGGAGAGTTGGATGCGGGA+GGG 0.500293 2_1:+53024851 None:intergenic
GGTTGGATGGGATTGGACAT+TGG 0.502884 2_1:-53021887 Msa0211590:CDS
CACCACCACCGGTGGATATG+TGG 0.503719 2_1:+53021220 None:intergenic
GACATCCTTCTTCTCGGTGG+AGG 0.504587 2_1:-53022224 Msa0211590:CDS
TGACTCCCTCTGTTGATGCA+TGG 0.505501 2_1:+53022961 None:intergenic
ATCATATGGAATGGACCAAT+GGG 0.507151 2_1:-53021815 Msa0211590:CDS
CTAACTTATCTTCCTCTACA+AGG 0.507420 2_1:+53022153 None:intergenic
TGGGCGGGCGCCGAGGAATG+AGG 0.508092 2_1:+53024832 None:intergenic
AAATTGTCTTACACGGCGAC+TGG 0.508972 2_1:+53021135 None:intergenic
TGCGGAGTTAAAGGGAAAGA+AGG 0.510243 2_1:-53024675 Msa0211590:CDS
TTGGCCGACCTAAGTGGAAA+GGG 0.511148 2_1:-53021315 Msa0211590:CDS
AGGAACAAAGGAAGAACGAT+TGG 0.512865 2_1:+53025055 None:intergenic
CCATCAGGGATGGCAGATGC+TGG 0.516699 2_1:+53021908 None:intergenic
GGCCGTGCAGGTGGCGTCGA+AGG 0.517503 2_1:-53024771 Msa0211590:CDS
AGGAGATTCTGTTGCAGCTG+TGG 0.521058 2_1:-53021271 Msa0211590:CDS
AAGGCCATTTGCTGCAATTG+TGG 0.523726 2_1:-53022303 Msa0211590:CDS
GGGGAAGAGGATTTAGTGGT+GGG 0.524758 2_1:+53024890 None:intergenic
GAGTGACACACCCTTTGCCT+TGG 0.526454 2_1:+53022103 None:intergenic
CTCCAAACTTGCACCACCAC+CGG 0.527384 2_1:+53021209 None:intergenic
AGGCCATTTGCTGCAATTGT+GGG 0.527834 2_1:-53022302 Msa0211590:CDS
AACCTGGCTGTTTGCATCAG+GGG 0.528684 2_1:+53022043 None:intergenic
ATTAAGGCCGAAGACAGTAT+TGG 0.529102 2_1:-53023152 Msa0211590:CDS
TCTGCAATCACCACATCACT+TGG 0.530000 2_1:+53022074 None:intergenic
GGCGGAGTGGGCGGGCGCCG+AGG 0.530211 2_1:+53024825 None:intergenic
ATCCAACTCTCCTCATTCCT+CGG 0.531300 2_1:-53024842 Msa0211590:CDS
TATCATATGGAATGGACCAA+TGG 0.531791 2_1:-53021816 Msa0211590:CDS
TTGTGAGAACACTGAAACCG+AGG 0.535903 2_1:+53021090 None:intergenic
GCCACCTGCACGGCCAACAA+AGG 0.536009 2_1:+53024779 None:intergenic
GCCATCCCTGATGGTTGGAT+GGG 0.536052 2_1:-53021899 Msa0211590:CDS
CCACCTGCACGGCCAACAAA+GGG 0.536732 2_1:+53024780 None:intergenic
TGCAGGTGGCGTCGAAGGTG+AGG 0.538726 2_1:-53024766 Msa0211590:CDS
CATCTGCCATCCCTGATGGT+TGG 0.539191 2_1:-53021904 Msa0211590:CDS
ACCCAAACTATCATATGGAA+TGG 0.540873 2_1:-53021824 Msa0211590:CDS
AGAATATTACTGATGATACT+AGG 0.543997 2_1:-53024610 Msa0211590:CDS
GAGTTTGACAAGTTTGCTGT+TGG 0.546134 2_1:-53021785 Msa0211590:CDS
GTAGAACTCCTCCGTCTGGA+AGG 0.546631 2_1:+53023102 None:intergenic
CCATTTGCTGCAATTGTGGG+TGG 0.547865 2_1:-53022299 Msa0211590:CDS
CCCTTTGTTGGCCGTGCAGG+TGG 0.548579 2_1:-53024780 Msa0211590:CDS
AAGAAGTTGGCCGACCTAAG+TGG 0.552641 2_1:-53021321 Msa0211590:CDS
GTTGCAGCTGTGGAGAAAGT+AGG 0.554074 2_1:-53021261 Msa0211590:CDS
CGAAGGTGAGGACAGTAAGC+GGG 0.555356 2_1:-53024754 Msa0211590:CDS
TGGTCCAGAAGTAGAAAAGT+TGG 0.556192 2_1:-53023132 Msa0211590:CDS
ATTGCTAAAGCCAAGGCAAA+GGG 0.556209 2_1:-53022113 Msa0211590:CDS
AATTGCTAAAGCCAAGGCAA+AGG 0.556809 2_1:-53022114 Msa0211590:CDS
TGCATTCGGTACTGCTCACA+GGG 0.557008 2_1:-53022985 Msa0211590:CDS
GTCTTACACGGCGACTGGTG+TGG 0.558517 2_1:+53021140 None:intergenic
ACTCTTGCTGCCAAGTGATG+TGG 0.558831 2_1:-53022084 Msa0211590:CDS
GCGAAGCCAAGTCGGCGGAG+TGG 0.559227 2_1:+53024812 None:intergenic
AAGGCACAAGGTCTTGCAGT+TGG 0.559506 2_1:-53022182 Msa0211590:CDS
GACTGGTGTGGCTTCATCAA+GGG 0.559879 2_1:+53021152 None:intergenic
GAATGAGGAGAGTTGGATGC+GGG 0.560217 2_1:+53024847 None:intergenic
AGCCACATATCCACCGGTGG+TGG 0.561258 2_1:-53021222 Msa0211590:CDS
TCAAACTCAAACACTCCCAT+TGG 0.562382 2_1:+53021800 None:intergenic
CAAGTTTGCTGTTGGAACAG+AGG 0.563230 2_1:-53021777 Msa0211590:intron
TCGAAGGTGAGGACAGTAAG+CGG 0.566470 2_1:-53024755 Msa0211590:CDS
AGTGGTGGGGAGGAGTGAGA+TGG 0.566517 2_1:+53024904 None:intergenic
GGATGGGGAAGAGGATTTAG+TGG 0.567768 2_1:+53024886 None:intergenic
TCAGAGAGCCTGGGAACAAG+AGG 0.568936 2_1:+53023303 None:intergenic
CCAGCATCTGCCATCCCTGA+TGG 0.573732 2_1:-53021908 Msa0211590:CDS
TTCTACTTCTCGAAAATGTG+AGG 0.575840 2_1:-53023085 Msa0211590:CDS
AAATTTGCAGGGAAGGCCAA+AGG 0.578585 2_1:-53023352 Msa0211590:intron
AACACTAATTGCTAAAGCCA+AGG 0.581644 2_1:-53022120 Msa0211590:CDS
AGTAAGAGGAGTGGTGTCGA+TGG 0.583231 2_1:-53024726 Msa0211590:CDS
AAATTTACACTAACAAACTC+GGG 0.584120 2_1:+53021036 None:intergenic
AAACCTGGCTGTTTGCATCA+GGG 0.584272 2_1:+53022042 None:intergenic
CTGTATGTGAATGATGCATT+CGG 0.584611 2_1:-53022999 Msa0211590:CDS
TCCAGAAGTAGAAAAGTTGG+TGG 0.584684 2_1:-53023129 Msa0211590:CDS
AAAGGAAGAACGATTGGGTG+TGG 0.584748 2_1:+53025061 None:intergenic
CAGCTGCAGCGAAGCCAAGT+CGG 0.585809 2_1:+53024804 None:intergenic
GTTGGCCGACCTAAGTGGAA+AGG 0.587208 2_1:-53021316 Msa0211590:CDS
GGGAAGAGGATTTAGTGGTG+GGG 0.587400 2_1:+53024891 None:intergenic
AAAATTTACACTAACAAACT+CGG 0.588917 2_1:+53021035 None:intergenic
GTGTGGCTTCATCAAGGGCG+AGG 0.589679 2_1:+53021157 None:intergenic
TCCCATCCAACCATCAGGGA+TGG 0.591331 2_1:+53021898 None:intergenic
GATGTGGACGTGAGGAACAA+AGG 0.591498 2_1:+53025043 None:intergenic
CTGAATGAATGAATGTAGAG+GGG 0.592254 2_1:+53025006 None:intergenic
CACATACAGATCTGCGAGTG+CGG 0.592722 2_1:+53023013 None:intergenic
GCAAGTTTGGAGCTATTGGA+AGG 0.593757 2_1:-53021198 Msa0211590:CDS
GTCATGAGCCACATATCCAC+CGG 0.595301 2_1:-53021228 Msa0211590:CDS
GGGGTGACAACTATTATTGG+AGG 0.595480 2_1:-53021294 Msa0211590:CDS
AATTTGCAGGGAAGGCCAAA+GGG 0.596112 2_1:-53023351 Msa0211590:intron
GGAATGAGGAGAGTTGGATG+CGG 0.598775 2_1:+53024846 None:intergenic
GGAACAAAGGAAGAACGATT+GGG 0.599505 2_1:+53025056 None:intergenic
CGGGAGAGGAGTAAGAGGAG+TGG 0.599596 2_1:-53024735 Msa0211590:CDS
CACCTTCGACGCCACCTGCA+CGG 0.601291 2_1:+53024769 None:intergenic
ATTCCATATGATAGTTTGGG+TGG 0.602027 2_1:+53021826 None:intergenic
GGAACTTGACTACCTTGTTG+GGG 0.602846 2_1:-53022342 Msa0211590:CDS
AAGCTGAAAATTGTCTTACA+CGG 0.607490 2_1:+53021128 None:intergenic
TAGAACTCCTCCGTCTGGAA+GGG 0.608774 2_1:+53023103 None:intergenic
ATATTCTGATTATCATCAAG+AGG 0.609805 2_1:+53024626 None:intergenic
GTGACAACTATTATTGGAGG+AGG 0.610339 2_1:-53021291 Msa0211590:CDS
AAAAGAAAACCAGCAACAGA+TGG 0.611850 2_1:+53022924 None:intergenic
ACTGAATGAATGAATGTAGA+GGG 0.614323 2_1:+53025005 None:intergenic
TGTCTCTTATCGTTGAGATG+AGG 0.614873 2_1:+53025099 None:intergenic
AGTTGGTTCATCCCTTGTAG+AGG 0.617364 2_1:-53022165 Msa0211590:CDS
GGGAATATAGAAGAAAGATG+TGG 0.617404 2_1:+53025027 None:intergenic
GTGGCTTCCCTTCCAGACGG+AGG 0.619373 2_1:-53023110 Msa0211590:CDS
GGATATGTGGCTCATGACAT+CGG 0.619929 2_1:+53021233 None:intergenic
TTGCTTGTAACTGTAAACCT+AGG 0.624625 2_1:-53020980 Msa0211590:three_prime_UTR
CAAACTTGCACCACCACCGG+TGG 0.628444 2_1:+53021212 None:intergenic
TTTACACTAACAAACTCGGG+AGG 0.628511 2_1:+53021039 None:intergenic
CCAATCCCATCCAACCATCA+GGG 0.630024 2_1:+53021894 None:intergenic
TTACACTAACAAACTCGGGA+GGG 0.636995 2_1:+53021040 None:intergenic
TGTCACTCCCAAATACAGCT+TGG 0.637672 2_1:-53023328 Msa0211590:CDS
TCGATGGCGAAGAAAAGTGT+GGG 0.641299 2_1:-53024710 Msa0211590:CDS
ACAACATAAGCTCTTATACA+AGG 0.642791 2_1:+53021067 None:intergenic
AGAAGAAAGATGTGGACGTG+AGG 0.642909 2_1:+53025035 None:intergenic
GTTGACATCCTTCTTCTCGG+TGG 0.644584 2_1:-53022227 Msa0211590:CDS
TGAATGAATGAATGTAGAGG+GGG 0.644990 2_1:+53025007 None:intergenic
GGCTTGATACTGCCCCAACA+AGG 0.645353 2_1:+53022330 None:intergenic
GAGAACACTGAAACCGAGGG+TGG 0.647006 2_1:+53021094 None:intergenic
CTGCAGCGAAGCCAAGTCGG+CGG 0.647239 2_1:+53024807 None:intergenic
TAACTTATCTTCCTCTACAA+GGG 0.648032 2_1:+53022154 None:intergenic
TTGGTGGCTTCCCTTCCAGA+CGG 0.648069 2_1:-53023113 Msa0211590:CDS
TGGCCGACCTAAGTGGAAAG+GGG 0.648721 2_1:-53021314 Msa0211590:CDS
AGGGCCCATGCATCAACAGA+GGG 0.656285 2_1:-53022966 Msa0211590:CDS
GGCCGACCTAAGTGGAAAGG+GGG 0.657571 2_1:-53021313 Msa0211590:CDS
TGTGGGAGATTTGAGTGGTG+CGG 0.665857 2_1:-53024693 Msa0211590:CDS
TAATAGTTGGAATAGCAGCA+CGG 0.665962 2_1:+53024585 None:intergenic
AGAACACTGAAACCGAGGGT+GGG 0.674665 2_1:+53021095 None:intergenic
AACTGAATGAATGAATGTAG+AGG 0.674742 2_1:+53025004 None:intergenic
CCAATGAGTTCAGAGAGCCT+GGG 0.679856 2_1:+53023294 None:intergenic
GTCGATGGCGAAGAAAAGTG+TGG 0.682008 2_1:-53024711 Msa0211590:CDS
CAGGGCCCATGCATCAACAG+AGG 0.685126 2_1:-53022967 Msa0211590:CDS
TGTGAGAACACTGAAACCGA+GGG 0.688071 2_1:+53021091 None:intergenic
ATGAGCCACATATCCACCGG+TGG 0.700239 2_1:-53021225 Msa0211590:CDS
AAAAGTGTGGGAGATTTGAG+TGG 0.703173 2_1:-53024698 Msa0211590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATATCTAATTCAAAA+TGG - chr2_1:53021371-53021390 Msa0211590:intron 10.0%
!! AATTCAATTTAAGAAAATTA+AGG - chr2_1:53021607-53021626 Msa0211590:intron 10.0%
!! AAATGATAATTAATTAATTG+AGG + chr2_1:53023464-53023483 None:intergenic 10.0%
!! TGAATTAGATATTTAATAGT+TGG + chr2_1:53021368-53021387 None:intergenic 15.0%
!!! GTTATTAATTTGTTTATTAC+CGG - chr2_1:53021682-53021701 Msa0211590:intron 15.0%
!!! AGTAAAAATTAGATATTTTG+AGG - chr2_1:53021871-53021890 Msa0211590:CDS 15.0%
!! TCTATAATTATATCATTATC+TGG - chr2_1:53022263-53022282 Msa0211590:CDS 15.0%
!! TTAATATTTATATCAAGAGT+AGG + chr2_1:53022480-53022499 None:intergenic 15.0%
!!! AAAAGTATTGTTTTGAAATT+GGG - chr2_1:53024491-53024510 Msa0211590:intron 15.0%
!! AAAAATAGAATATGTAGTAA+CGG + chr2_1:53024537-53024556 None:intergenic 15.0%
!! AAATGTAAAAAACAAACTTA+TGG + chr2_1:53025024-53025043 None:intergenic 15.0%
!!! TGTTTTTTACATTTATCTTT+AGG - chr2_1:53025030-53025049 Msa0211590:five_prime_UTR 15.0%
!! ACTTATTTGAACTTATTTAT+TGG - chr2_1:53025067-53025086 Msa0211590:five_prime_UTR 15.0%
!!! TGTTTGTGTAAGATTTTTTT+TGG + chr2_1:53020969-53020988 None:intergenic 20.0%
!! TTCATACTTTAGTTATAATG+TGG - chr2_1:53021462-53021481 Msa0211590:intron 20.0%
!! CAAATATAACAAATCATAGA+TGG + chr2_1:53021651-53021670 None:intergenic 20.0%
!! GTAAAATAAGTAATATCAAC+CGG + chr2_1:53021704-53021723 None:intergenic 20.0%
!!! AAAATGTTTTGAATTTGAGT+TGG - chr2_1:53021905-53021924 Msa0211590:CDS 20.0%
!!! AAATGTTTTGAATTTGAGTT+GGG - chr2_1:53021906-53021925 Msa0211590:CDS 20.0%
!!! AATTTGAAGAAAAGTACAAT+AGG - chr2_1:53021936-53021955 Msa0211590:intron 20.0%
!!! ATTCTTACTCATAAAGTATT+TGG - chr2_1:53022079-53022098 Msa0211590:CDS 20.0%
!!! TTCTTACTCATAAAGTATTT+GGG - chr2_1:53022080-53022099 Msa0211590:CDS 20.0%
!! TAATTATATCATTATCTGGT+AGG - chr2_1:53022267-53022286 Msa0211590:CDS 20.0%
!! ATATAGGTTAATGATTATTG+AGG - chr2_1:53022681-53022700 Msa0211590:intron 20.0%
!!! TAGATAGTTTGCATAAAATT+TGG + chr2_1:53023091-53023110 None:intergenic 20.0%
!!! TATGCAAACTATCTAAAATA+AGG - chr2_1:53023096-53023115 Msa0211590:CDS 20.0%
!! AATTGTAAAAGAAAATAGTG+AGG + chr2_1:53023322-53023341 None:intergenic 20.0%
!!! TAATTGAAAATGTTTTCAGA+AGG - chr2_1:53023492-53023511 Msa0211590:intron 20.0%
!! GTGTAATTATTAGATATACA+TGG + chr2_1:53023550-53023569 None:intergenic 20.0%
!!! TTGAATGTTTTAATAGAATC+TGG + chr2_1:53024077-53024096 None:intergenic 20.0%
!!! CAAAAGTATTGTTTTGAAAT+TGG - chr2_1:53024490-53024509 Msa0211590:intron 20.0%
!! GAAAATGTAAATTATGTAAC+CGG + chr2_1:53024573-53024592 None:intergenic 20.0%
!! AAAATTTACACTAACAAACT+CGG + chr2_1:53024905-53024924 None:intergenic 20.0%
!! GGAAGATTTATTTGAATTTA+TGG + chr2_1:53024990-53025009 None:intergenic 20.0%
! ATATTCTGATTATCATCAAG+AGG + chr2_1:53021314-53021333 None:intergenic 25.0%
! AGAATATTACTGATGATACT+AGG - chr2_1:53021327-53021346 Msa0211590:CDS 25.0%
! TCTGATTTCCATTAACATAT+CGG + chr2_1:53021829-53021848 None:intergenic 25.0%
!!! AATGTTTTGAATTTGAGTTG+GGG - chr2_1:53021907-53021926 Msa0211590:CDS 25.0%
! ATTATGAAGATGATGAAGTT+TGG - chr2_1:53022016-53022035 Msa0211590:intron 25.0%
!!! ATTTGGGTTTTAATTTGAAC+TGG - chr2_1:53022096-53022115 Msa0211590:CDS 25.0%
! ACCTTAGATTGTAATGTTAA+GGG - chr2_1:53022135-53022154 Msa0211590:CDS 25.0%
! ATCTTTATAACAATGCATGT+TGG - chr2_1:53022221-53022240 Msa0211590:CDS 25.0%
! CCAACAAAAAATATGACAAA+AGG + chr2_1:53022331-53022350 None:intergenic 25.0%
!!! CCTTTTGTCATATTTTTTGT+TGG - chr2_1:53022328-53022347 Msa0211590:CDS 25.0%
! TGAAAATGTAATTACAGAGT+TGG + chr2_1:53022430-53022449 None:intergenic 25.0%
! TTAAATATGTATAAACGCTG+TGG - chr2_1:53022525-53022544 Msa0211590:intron 25.0%
! GAATTGAGGTATGTTTATAT+AGG - chr2_1:53022665-53022684 Msa0211590:intron 25.0%
! GTTAATGATTATTGAGGAAT+GGG - chr2_1:53022687-53022706 Msa0211590:intron 25.0%
! ATAATCCAAATGCAAGAAAA+GGG + chr2_1:53022756-53022775 None:intergenic 25.0%
! AATAATCCAAATGCAAGAAA+AGG + chr2_1:53022757-53022776 None:intergenic 25.0%
!! TTGATGTTATTTAGTAGAAG+AGG + chr2_1:53023060-53023079 None:intergenic 25.0%
! CTTCTACTAAATAACATCAA+TGG - chr2_1:53023060-53023079 Msa0211590:CDS 25.0%
!! ACTATCTAAAATAAGGTTTC+TGG - chr2_1:53023103-53023122 Msa0211590:CDS 25.0%
! TTGAGGAAAATAATTGTGAT+AGG + chr2_1:53023447-53023466 None:intergenic 25.0%
!! CATGCATATTTTCATGTTTT+AGG - chr2_1:53023574-53023593 Msa0211590:intron 25.0%
!! AATGATCTTCACATTTTACA+AGG - chr2_1:53023736-53023755 Msa0211590:intron 25.0%
! TAAAACATTCAATGAAGCAT+TGG - chr2_1:53024085-53024104 Msa0211590:intron 25.0%
! TGGATACTCTTATAAATATG+TGG - chr2_1:53024269-53024288 Msa0211590:intron 25.0%
!!! TTCTATTTTTCTACTTTGCA+CGG - chr2_1:53024547-53024566 Msa0211590:CDS 25.0%
! TTTGCAATAGACTGAAAAAA+GGG + chr2_1:53024598-53024617 None:intergenic 25.0%
! AAATTTACACTAACAAACTC+GGG + chr2_1:53024904-53024923 None:intergenic 25.0%
ACTGAATGAATGAATGTAGA+GGG + chr2_1:53020935-53020954 None:intergenic 30.0%
AACTGAATGAATGAATGTAG+AGG + chr2_1:53020936-53020955 None:intergenic 30.0%
! AGTCATTCTTTCTAGTCATT+TGG - chr2_1:53021400-53021419 Msa0211590:intron 30.0%
!! GTTTAATTTGTATGCACTGA+CGG - chr2_1:53021522-53021541 Msa0211590:intron 30.0%
AAGTGAGTTGTTTGCTTTAA+AGG - chr2_1:53021730-53021749 Msa0211590:intron 30.0%
CTGATTTCCATTAACATATC+GGG + chr2_1:53021828-53021847 None:intergenic 30.0%
CACCTTAGATTGTAATGTTA+AGG - chr2_1:53022134-53022153 Msa0211590:CDS 30.0%
ACCCTTAACATTACAATCTA+AGG + chr2_1:53022139-53022158 None:intergenic 30.0%
AGCATTTAGATGATGAAACA+TGG + chr2_1:53022183-53022202 None:intergenic 30.0%
ATCATCTAAATGCTTTGCTT+TGG - chr2_1:53022189-53022208 Msa0211590:CDS 30.0%
TTATAACAATGCATGTTGGA+TGG - chr2_1:53022225-53022244 Msa0211590:CDS 30.0%
!!! ATTTTTTGTTGGTGAAGTGA+AGG - chr2_1:53022339-53022358 Msa0211590:CDS 30.0%
ATTTATATCAAGAGTAGGCA+TGG + chr2_1:53022475-53022494 None:intergenic 30.0%
! TGACTTTTGATGAAATTTGC+AGG - chr2_1:53022573-53022592 Msa0211590:intron 30.0%
! GACTTTTGATGAAATTTGCA+GGG - chr2_1:53022574-53022593 Msa0211590:intron 30.0%
GGTTAATGATTATTGAGGAA+TGG - chr2_1:53022686-53022705 Msa0211590:intron 30.0%
TAATCCAAATGCAAGAAAAG+GGG + chr2_1:53022755-53022774 None:intergenic 30.0%
GGATTATTGACAGGTTATTA+AGG - chr2_1:53022769-53022788 Msa0211590:intron 30.0%
ATGAAACACGGAAAGTAAAT+GGG + chr2_1:53023243-53023262 None:intergenic 30.0%
AGAGATGAAAACATGAAACA+CGG + chr2_1:53023255-53023274 None:intergenic 30.0%
! AGACAAATGAAAACACGTTT+TGG + chr2_1:53023385-53023404 None:intergenic 30.0%
! ATGTTTTCAGAAGGTAAACA+AGG - chr2_1:53023501-53023520 Msa0211590:intron 30.0%
! TCTAAGGTCTCATCTAAAAT+TGG - chr2_1:53023662-53023681 Msa0211590:intron 30.0%
TAACTTATCTTCCTCTACAA+GGG + chr2_1:53023786-53023805 None:intergenic 30.0%
AAAGGGTTAATGCAGAATTT+AGG + chr2_1:53024000-53024019 None:intergenic 30.0%
TCCATTCCATATGATAGTTT+GGG + chr2_1:53024117-53024136 None:intergenic 30.0%
GAACCATCATATATAGAGTT+TGG - chr2_1:53024190-53024209 Msa0211590:intron 30.0%
GAACCAAACTCTATATATGA+TGG + chr2_1:53024196-53024215 None:intergenic 30.0%
!! TATAAGAGTATCCATCACTA+TGG + chr2_1:53024263-53024282 None:intergenic 30.0%
CTTTGCAATAGACTGAAAAA+AGG + chr2_1:53024599-53024618 None:intergenic 30.0%
AAGCTGAAAATTGTCTTACA+CGG + chr2_1:53024812-53024831 None:intergenic 30.0%
ACAACATAAGCTCTTATACA+AGG + chr2_1:53024873-53024892 None:intergenic 30.0%
GGGAATATAGAAGAAAGATG+TGG + chr2_1:53020913-53020932 None:intergenic 35.0%
TGAATGAATGAATGTAGAGG+GGG + chr2_1:53020933-53020952 None:intergenic 35.0%
CTGAATGAATGAATGTAGAG+GGG + chr2_1:53020934-53020953 None:intergenic 35.0%
TAATAGTTGGAATAGCAGCA+CGG + chr2_1:53021355-53021374 None:intergenic 35.0%
! TTTTACAAAGACATCCAACG+AGG + chr2_1:53021564-53021583 None:intergenic 35.0%
TTTCCTTCCCGATATGTTAA+TGG - chr2_1:53021818-53021837 Msa0211590:CDS 35.0%
TTTCCATTAACATATCGGGA+AGG + chr2_1:53021824-53021843 None:intergenic 35.0%
CTTAACATATCTCGCTTGAA+TGG - chr2_1:53021973-53021992 Msa0211590:intron 35.0%
AAGATGATGAAGTTTGGAGA+TGG - chr2_1:53022022-53022041 Msa0211590:intron 35.0%
ATCTAAATGCTTTGCTTTGG+AGG - chr2_1:53022192-53022211 Msa0211590:CDS 35.0%
TTTGATGAAATTTGCAGGGA+AGG - chr2_1:53022578-53022597 Msa0211590:intron 35.0%
CTTGCATTTGGATTATTGAC+AGG - chr2_1:53022760-53022779 Msa0211590:intron 35.0%
TTCTACTTCTCGAAAATGTG+AGG - chr2_1:53022852-53022871 Msa0211590:intron 35.0%
! CGAAAATGTGAGGTTTTACA+AGG - chr2_1:53022862-53022881 Msa0211590:intron 35.0%
! AAATGTGAGGTTTTACAAGG+AGG - chr2_1:53022865-53022884 Msa0211590:intron 35.0%
CTGTATGTGAATGATGCATT+CGG - chr2_1:53022938-53022957 Msa0211590:CDS 35.0%
AAAAGAAAACCAGCAACAGA+TGG + chr2_1:53023016-53023035 None:intergenic 35.0%
!!! TGCTGGTTTTCTTTTGCAAA+AGG - chr2_1:53023021-53023040 Msa0211590:CDS 35.0%
! GGTTTTCTTTTGCAAAAGGT+TGG - chr2_1:53023025-53023044 Msa0211590:CDS 35.0%
GCAGTAAAAACAGAAAGTAG+TGG + chr2_1:53023138-53023157 None:intergenic 35.0%
TCAAATGTGAATCATTCTCC+AGG - chr2_1:53023205-53023224 Msa0211590:intron 35.0%
CAAATGTGAATCATTCTCCA+GGG - chr2_1:53023206-53023225 Msa0211590:intron 35.0%
CATGAAACACGGAAAGTAAA+TGG + chr2_1:53023244-53023263 None:intergenic 35.0%
TAATTGTGATAGGCTGAAGA+CGG + chr2_1:53023437-53023456 None:intergenic 35.0%
AAAGTTGACATCCTTCTTCT+CGG - chr2_1:53023707-53023726 Msa0211590:intron 35.0%
! TTCACATTTTACAAGGCACA+AGG - chr2_1:53023743-53023762 Msa0211590:intron 35.0%
CTAACTTATCTTCCTCTACA+AGG + chr2_1:53023787-53023806 None:intergenic 35.0%
AACACTAATTGCTAAAGCCA+AGG - chr2_1:53023817-53023836 Msa0211590:intron 35.0%
AGTAGCTTAGAAAACAAACC+TGG + chr2_1:53023913-53023932 None:intergenic 35.0%
ATACCACCCAAACTATCATA+TGG - chr2_1:53024108-53024127 Msa0211590:intron 35.0%
ATTCCATATGATAGTTTGGG+TGG + chr2_1:53024114-53024133 None:intergenic 35.0%
ACCCAAACTATCATATGGAA+TGG - chr2_1:53024113-53024132 Msa0211590:intron 35.0%
GTCCATTCCATATGATAGTT+TGG + chr2_1:53024118-53024137 None:intergenic 35.0%
TATCATATGGAATGGACCAA+TGG - chr2_1:53024121-53024140 Msa0211590:intron 35.0%
ATCATATGGAATGGACCAAT+GGG - chr2_1:53024122-53024141 Msa0211590:intron 35.0%
TCAGTCTATTGCAAAGAAGT+TGG - chr2_1:53024603-53024622 Msa0211590:CDS 35.0%
!!! TTGTAATTTTTTCCCACCCT+CGG - chr2_1:53024830-53024849 Msa0211590:CDS 35.0%
TTGCTTGTAACTGTAAACCT+AGG - chr2_1:53024957-53024976 Msa0211590:five_prime_UTR 35.0%
TGTCTCTTATCGTTGAGATG+AGG + chr2_1:53020841-53020860 None:intergenic 40.0%
GGAACAAAGGAAGAACGATT+GGG + chr2_1:53020884-53020903 None:intergenic 40.0%
AGGAACAAAGGAAGAACGAT+TGG + chr2_1:53020885-53020904 None:intergenic 40.0%
! AAAAGTGTGGGAGATTTGAG+TGG - chr2_1:53021239-53021258 Msa0211590:CDS 40.0%
GAATCTGAGTAACTCATGCA+TGG - chr2_1:53021757-53021776 Msa0211590:intron 40.0%
ATCGGGAAGGAAAAAAGAAG+AGG + chr2_1:53021811-53021830 None:intergenic 40.0%
ATGATGAAGTTTGGAGATGG+AGG - chr2_1:53022025-53022044 Msa0211590:intron 40.0%
!! TAAATGCTTTGCTTTGGAGG+AGG - chr2_1:53022195-53022214 Msa0211590:CDS 40.0%
CTCTGAACTCATTGGAATTG+AGG - chr2_1:53022651-53022670 Msa0211590:intron 40.0%
!! AGGAATGGGTTGAAACATGT+TGG - chr2_1:53022701-53022720 Msa0211590:intron 40.0%
! CATTCCCCTTTTCTTGCATT+TGG - chr2_1:53022748-53022767 Msa0211590:intron 40.0%
ATTAAGGCCGAAGACAGTAT+TGG - chr2_1:53022785-53022804 Msa0211590:intron 40.0%
TTCTGGACCAATACTGTCTT+CGG + chr2_1:53022795-53022814 None:intergenic 40.0%
TGGTCCAGAAGTAGAAAAGT+TGG - chr2_1:53022805-53022824 Msa0211590:intron 40.0%
TCCAGAAGTAGAAAAGTTGG+TGG - chr2_1:53022808-53022827 Msa0211590:intron 40.0%
!!! GCAAGCTTTTTTGCATGTTC+AGG + chr2_1:53022905-53022924 None:intergenic 40.0%
! TATTTGAAGCCATCTGTTGC+TGG - chr2_1:53023004-53023023 Msa0211590:CDS 40.0%
TCATTCTCCAGGGAAAACTT+AGG - chr2_1:53023216-53023235 Msa0211590:intron 40.0%
TAGGAACTTGACTACCTTGT+TGG - chr2_1:53023593-53023612 Msa0211590:intron 40.0%
AGGAACTTGACTACCTTGTT+GGG - chr2_1:53023594-53023613 Msa0211590:intron 40.0%
! TTGCAGCAAATGGCCTTTTT+GGG + chr2_1:53023631-53023650 None:intergenic 40.0%
! ATTGCAGCAAATGGCCTTTT+TGG + chr2_1:53023632-53023651 None:intergenic 40.0%
AATTGCTAAAGCCAAGGCAA+AGG - chr2_1:53023823-53023842 Msa0211590:intron 40.0%
ATTGCTAAAGCCAAGGCAAA+GGG - chr2_1:53023824-53023843 Msa0211590:intron 40.0%
TCAAACTCAAACACTCCCAT+TGG + chr2_1:53024140-53024159 None:intergenic 40.0%
!! GAGTTTGACAAGTTTGCTGT+TGG - chr2_1:53024152-53024171 Msa0211590:intron 40.0%
ATTTCTCCACTCCATAGTGA+TGG - chr2_1:53024249-53024268 Msa0211590:intron 40.0%
!! CTTTTGATTGAAGACACGTC+CGG - chr2_1:53024314-53024333 Msa0211590:intron 40.0%
CATGTGTTTATGTCAGACAC+CGG + chr2_1:53024344-53024363 None:intergenic 40.0%
!! TAGGAGTTGGTGTTCCTAAA+AGG - chr2_1:53024426-53024445 Msa0211590:intron 40.0%
!! AGGAGTTGGTGTTCCTAAAA+GGG - chr2_1:53024427-53024446 Msa0211590:intron 40.0%
! ATTTTTCTACTTTGCACGGC+CGG - chr2_1:53024551-53024570 Msa0211590:CDS 40.0%
AAGGGGGTGACAACTATTAT+TGG - chr2_1:53024640-53024659 Msa0211590:CDS 40.0%
GTGACAACTATTATTGGAGG+AGG - chr2_1:53024646-53024665 Msa0211590:CDS 40.0%
TTACACTAACAAACTCGGGA+GGG + chr2_1:53024900-53024919 None:intergenic 40.0%
TTTACACTAACAAACTCGGG+AGG + chr2_1:53024901-53024920 None:intergenic 40.0%
GAATTTATGGCTTTCAGCCT+AGG + chr2_1:53024977-53024996 None:intergenic 40.0%
AAACTTATGGCAGCGACTAA+TGG + chr2_1:53025011-53025030 None:intergenic 40.0%
AGAACGATTGGGTGTGGTTT+GGG + chr2_1:53020873-53020892 None:intergenic 45.0%
AAGAACGATTGGGTGTGGTT+TGG + chr2_1:53020874-53020893 None:intergenic 45.0%
AAAGGAAGAACGATTGGGTG+TGG + chr2_1:53020879-53020898 None:intergenic 45.0%
AGAAGAAAGATGTGGACGTG+AGG + chr2_1:53020905-53020924 None:intergenic 45.0%
CTCTCTCTCTCTCTCTACAA+TGG - chr2_1:53020989-53021008 Msa0211590:three_prime_UTR 45.0%
ATCCAACTCTCCTCATTCCT+CGG - chr2_1:53021095-53021114 Msa0211590:three_prime_UTR 45.0%
! TCGATGGCGAAGAAAAGTGT+GGG - chr2_1:53021227-53021246 Msa0211590:CDS 45.0%
TTTGAGTGGTGCGGAGTTAA+AGG - chr2_1:53021253-53021272 Msa0211590:CDS 45.0%
TTGAGTGGTGCGGAGTTAAA+GGG - chr2_1:53021254-53021273 Msa0211590:CDS 45.0%
TGCGGAGTTAAAGGGAAAGA+AGG - chr2_1:53021262-53021281 Msa0211590:CDS 45.0%
! TTTGATTCGAGTGTCCTCGT+TGG - chr2_1:53021547-53021566 Msa0211590:intron 45.0%
GGGAAGGAAAAAAGAAGAGG+TGG + chr2_1:53021808-53021827 None:intergenic 45.0%
AAATTTGCAGGGAAGGCCAA+AGG - chr2_1:53022585-53022604 Msa0211590:intron 45.0%
AATTTGCAGGGAAGGCCAAA+GGG - chr2_1:53022586-53022605 Msa0211590:intron 45.0%
TATTTGGGAGTGACACCCTT+TGG + chr2_1:53022604-53022623 None:intergenic 45.0%
TGTCACTCCCAAATACAGCT+TGG - chr2_1:53022609-53022628 Msa0211590:intron 45.0%
!! AGAGGTGCCAAGCTGTATTT+GGG + chr2_1:53022619-53022638 None:intergenic 45.0%
!! AAGAGGTGCCAAGCTGTATT+TGG + chr2_1:53022620-53022639 None:intergenic 45.0%
! GCCACCAACTTTTCTACTTC+TGG + chr2_1:53022812-53022831 None:intergenic 45.0%
! AATGGGACCTAAGTTTTCCC+TGG + chr2_1:53023226-53023245 None:intergenic 45.0%
GGAACTTGACTACCTTGTTG+GGG - chr2_1:53023595-53023614 Msa0211590:intron 45.0%
! AAGGCCATTTGCTGCAATTG+TGG - chr2_1:53023634-53023653 Msa0211590:intron 45.0%
! AGGCCATTTGCTGCAATTGT+GGG - chr2_1:53023635-53023654 Msa0211590:intron 45.0%
! TGCAATTGTGGGTGGTTCTA+AGG - chr2_1:53023646-53023665 Msa0211590:intron 45.0%
! AGTTGGTTCATCCCTTGTAG+AGG - chr2_1:53023772-53023791 Msa0211590:intron 45.0%
TCTGCAATCACCACATCACT+TGG + chr2_1:53023866-53023885 None:intergenic 45.0%
AAACCTGGCTGTTTGCATCA+GGG + chr2_1:53023898-53023917 None:intergenic 45.0%
!! CAAGTTTGCTGTTGGAACAG+AGG - chr2_1:53024160-53024179 Msa0211590:intron 45.0%
GAGTATCCATCACTATGGAG+TGG + chr2_1:53024258-53024277 None:intergenic 45.0%
! GCAAGATGTACGTCCCTTTT+AGG + chr2_1:53024443-53024462 None:intergenic 45.0%
GGGGTGACAACTATTATTGG+AGG - chr2_1:53024643-53024662 Msa0211590:CDS 45.0%
GGATATGTGGCTCATGACAT+CGG + chr2_1:53024707-53024726 None:intergenic 45.0%
! TGGTGCAAGTTTGGAGCTAT+TGG - chr2_1:53024735-53024754 Msa0211590:CDS 45.0%
! GCAAGTTTGGAGCTATTGGA+AGG - chr2_1:53024739-53024758 Msa0211590:CDS 45.0%
AAATTGTCTTACACGGCGAC+TGG + chr2_1:53024805-53024824 None:intergenic 45.0%
TGTGAGAACACTGAAACCGA+GGG + chr2_1:53024849-53024868 None:intergenic 45.0%
TTGTGAGAACACTGAAACCG+AGG + chr2_1:53024850-53024869 None:intergenic 45.0%
!! TGGGTGTGGTTTGGGGATTT+TGG + chr2_1:53020865-53020884 None:intergenic 50.0%
GAACGATTGGGTGTGGTTTG+GGG + chr2_1:53020872-53020891 None:intergenic 50.0%
GATGTGGACGTGAGGAACAA+AGG + chr2_1:53020897-53020916 None:intergenic 50.0%
! AAGAGGATTTAGTGGTGGGG+AGG + chr2_1:53021046-53021065 None:intergenic 50.0%
GGGAAGAGGATTTAGTGGTG+GGG + chr2_1:53021049-53021068 None:intergenic 50.0%
GGGGAAGAGGATTTAGTGGT+GGG + chr2_1:53021050-53021069 None:intergenic 50.0%
TGGGGAAGAGGATTTAGTGG+TGG + chr2_1:53021051-53021070 None:intergenic 50.0%
GGATGGGGAAGAGGATTTAG+TGG + chr2_1:53021054-53021073 None:intergenic 50.0%
GAATGAGGAGAGTTGGATGC+GGG + chr2_1:53021093-53021112 None:intergenic 50.0%
GGAATGAGGAGAGTTGGATG+CGG + chr2_1:53021094-53021113 None:intergenic 50.0%
TCGAAGGTGAGGACAGTAAG+CGG - chr2_1:53021182-53021201 Msa0211590:CDS 50.0%
! AGTAAGAGGAGTGGTGTCGA+TGG - chr2_1:53021211-53021230 Msa0211590:CDS 50.0%
GTCGATGGCGAAGAAAAGTG+TGG - chr2_1:53021226-53021245 Msa0211590:CDS 50.0%
TGTGGGAGATTTGAGTGGTG+CGG - chr2_1:53021244-53021263 Msa0211590:CDS 50.0%
CCAATGAGTTCAGAGAGCCT+GGG + chr2_1:53022646-53022665 None:intergenic 50.0%
TCCAATGAGTTCAGAGAGCC+TGG + chr2_1:53022647-53022666 None:intergenic 50.0%
TAGAACTCCTCCGTCTGGAA+GGG + chr2_1:53022837-53022856 None:intergenic 50.0%
AGAAGTAGAACTCCTCCGTC+TGG + chr2_1:53022842-53022861 None:intergenic 50.0%
CACATACAGATCTGCGAGTG+CGG + chr2_1:53022927-53022946 None:intergenic 50.0%
ATGCATTCGGTACTGCTCAC+AGG - chr2_1:53022951-53022970 Msa0211590:CDS 50.0%
TGCATTCGGTACTGCTCACA+GGG - chr2_1:53022952-53022971 Msa0211590:CDS 50.0%
GACTCCCTCTGTTGATGCAT+GGG + chr2_1:53022978-53022997 None:intergenic 50.0%
TGACTCCCTCTGTTGATGCA+TGG + chr2_1:53022979-53022998 None:intergenic 50.0%
GCTGAAGACGGAAGACAAGT+TGG + chr2_1:53023425-53023444 None:intergenic 50.0%
GGGCAGTATCAAGCCCAAAA+AGG - chr2_1:53023615-53023634 Msa0211590:intron 50.0%
CCACCCACAATTGCAGCAAA+TGG + chr2_1:53023641-53023660 None:intergenic 50.0%
! CCATTTGCTGCAATTGTGGG+TGG - chr2_1:53023638-53023657 Msa0211590:intron 50.0%
GTTGACATCCTTCTTCTCGG+TGG - chr2_1:53023710-53023729 Msa0211590:intron 50.0%
TCATTCCTCCACCGAGAAGA+AGG + chr2_1:53023721-53023740 None:intergenic 50.0%
AAGGCACAAGGTCTTGCAGT+TGG - chr2_1:53023755-53023774 Msa0211590:intron 50.0%
ACTCTTGCTGCCAAGTGATG+TGG - chr2_1:53023853-53023872 Msa0211590:intron 50.0%
AACCTGGCTGTTTGCATCAG+GGG + chr2_1:53023897-53023916 None:intergenic 50.0%
CAAACCTGGCTGTTTGCATC+AGG + chr2_1:53023899-53023918 None:intergenic 50.0%
GATGCTGGCACGATCTGAAA+GGG + chr2_1:53024017-53024036 None:intergenic 50.0%
AGATGCTGGCACGATCTGAA+AGG + chr2_1:53024018-53024037 None:intergenic 50.0%
CCAATCCCATCCAACCATCA+GGG + chr2_1:53024046-53024065 None:intergenic 50.0%
TCCAATCCCATCCAACCATC+AGG + chr2_1:53024047-53024066 None:intergenic 50.0%
GGTTGGATGGGATTGGACAT+TGG - chr2_1:53024050-53024069 Msa0211590:intron 50.0%
TATGTCAGACACCGGATGTC+CGG + chr2_1:53024336-53024355 None:intergenic 50.0%
GGTGACACAGTCACGAACAT+CGG + chr2_1:53024395-53024414 None:intergenic 50.0%
CCAACTCCTACTCGATGAAG+CGG + chr2_1:53024416-53024435 None:intergenic 50.0%
AAGAAGTTGGCCGACCTAAG+TGG - chr2_1:53024616-53024635 Msa0211590:CDS 50.0%
TTGGCCGACCTAAGTGGAAA+GGG - chr2_1:53024622-53024641 Msa0211590:CDS 50.0%
TTGTCACCCCCTTTCCACTT+AGG + chr2_1:53024633-53024652 None:intergenic 50.0%
AGGAGATTCTGTTGCAGCTG+TGG - chr2_1:53024666-53024685 Msa0211590:CDS 50.0%
GTTGCAGCTGTGGAGAAAGT+AGG - chr2_1:53024676-53024695 Msa0211590:CDS 50.0%
GTCATGAGCCACATATCCAC+CGG - chr2_1:53024709-53024728 Msa0211590:CDS 50.0%
TTGGAAGGCAAAGAGCTTCC+AGG - chr2_1:53024754-53024773 Msa0211590:CDS 50.0%
GACTGGTGTGGCTTCATCAA+GGG + chr2_1:53024788-53024807 None:intergenic 50.0%
AGAACACTGAAACCGAGGGT+GGG + chr2_1:53024845-53024864 None:intergenic 50.0%
GAGGAGTGAGATGGTTGTGG+GGG + chr2_1:53021027-53021046 None:intergenic 55.0%
GGAGGAGTGAGATGGTTGTG+GGG + chr2_1:53021028-53021047 None:intergenic 55.0%
GGGAGGAGTGAGATGGTTGT+GGG + chr2_1:53021029-53021048 None:intergenic 55.0%
CGAAGGTGAGGACAGTAAGC+GGG - chr2_1:53021183-53021202 Msa0211590:CDS 55.0%
GTAAGCGGGAGAGGAGTAAG+AGG - chr2_1:53021197-53021216 Msa0211590:CDS 55.0%
TCAGAGAGCCTGGGAACAAG+AGG + chr2_1:53022637-53022656 None:intergenic 55.0%
CCCAGGCTCTCTGAACTCAT+TGG - chr2_1:53022643-53022662 Msa0211590:intron 55.0%
! TTGGTGGCTTCCCTTCCAGA+CGG - chr2_1:53022824-53022843 Msa0211590:intron 55.0%
GTAGAACTCCTCCGTCTGGA+AGG + chr2_1:53022838-53022857 None:intergenic 55.0%
AGGGCCCATGCATCAACAGA+GGG - chr2_1:53022971-53022990 Msa0211590:CDS 55.0%
GGCTTGATACTGCCCCAACA+AGG + chr2_1:53023610-53023629 None:intergenic 55.0%
GACATCCTTCTTCTCGGTGG+AGG - chr2_1:53023713-53023732 Msa0211590:intron 55.0%
GAGTGACACACCCTTTGCCT+TGG + chr2_1:53023837-53023856 None:intergenic 55.0%
CATCTGCCATCCCTGATGGT+TGG - chr2_1:53024033-53024052 Msa0211590:intron 55.0%
TGCCATCCCTGATGGTTGGA+TGG - chr2_1:53024037-53024056 Msa0211590:intron 55.0%
GCCATCCCTGATGGTTGGAT+GGG - chr2_1:53024038-53024057 Msa0211590:intron 55.0%
TCCCATCCAACCATCAGGGA+TGG + chr2_1:53024042-53024061 None:intergenic 55.0%
CCCTGATGGTTGGATGGGAT+TGG - chr2_1:53024043-53024062 Msa0211590:intron 55.0%
TGAAGACACGTCCGGACATC+CGG - chr2_1:53024322-53024341 Msa0211590:intron 55.0%
GTGTCACCGCTTCATCGAGT+AGG - chr2_1:53024407-53024426 Msa0211590:intron 55.0%
CCGCTTCATCGAGTAGGAGT+TGG - chr2_1:53024413-53024432 Msa0211590:intron 55.0%
GTTGGCCGACCTAAGTGGAA+AGG - chr2_1:53024621-53024640 Msa0211590:CDS 55.0%
TGGCCGACCTAAGTGGAAAG+GGG - chr2_1:53024623-53024642 Msa0211590:CDS 55.0%
CACCCCCTTTCCACTTAGGT+CGG + chr2_1:53024629-53024648 None:intergenic 55.0%
ATGAGCCACATATCCACCGG+TGG - chr2_1:53024712-53024731 Msa0211590:CDS 55.0%
CTCCAAACTTGCACCACCAC+CGG + chr2_1:53024731-53024750 None:intergenic 55.0%
CGACTGGTGTGGCTTCATCA+AGG + chr2_1:53024789-53024808 None:intergenic 55.0%
GAGAACACTGAAACCGAGGG+TGG + chr2_1:53024846-53024865 None:intergenic 55.0%
GGGGAGGAGTGAGATGGTTG+TGG + chr2_1:53021030-53021049 None:intergenic 60.0%
! AGTGGTGGGGAGGAGTGAGA+TGG + chr2_1:53021036-53021055 None:intergenic 60.0%
AGGAGAGTTGGATGCGGGAG+GGG + chr2_1:53021088-53021107 None:intergenic 60.0%
GAGGAGAGTTGGATGCGGGA+GGG + chr2_1:53021089-53021108 None:intergenic 60.0%
TGAGGAGAGTTGGATGCGGG+AGG + chr2_1:53021090-53021109 None:intergenic 60.0%
CGCCGAGGAATGAGGAGAGT+TGG + chr2_1:53021100-53021119 None:intergenic 60.0%
CAGCTGCAGCGAAGCCAAGT+CGG + chr2_1:53021136-53021155 None:intergenic 60.0%
CGCTGCAGCTGACCCTTTGT+TGG - chr2_1:53021145-53021164 Msa0211590:CDS 60.0%
TGACCCTTTGTTGGCCGTGC+AGG - chr2_1:53021154-53021173 Msa0211590:CDS 60.0%
CCACCTGCACGGCCAACAAA+GGG + chr2_1:53021160-53021179 None:intergenic 60.0%
GTGAGGACAGTAAGCGGGAG+AGG - chr2_1:53021188-53021207 Msa0211590:CDS 60.0%
CGGGAGAGGAGTAAGAGGAG+TGG - chr2_1:53021202-53021221 Msa0211590:CDS 60.0%
GCTTGGCACCTCTTGTTCCC+AGG - chr2_1:53022626-53022645 Msa0211590:intron 60.0%
CAGGGCCCATGCATCAACAG+AGG - chr2_1:53022970-53022989 Msa0211590:CDS 60.0%
CCATCAGGGATGGCAGATGC+TGG + chr2_1:53024032-53024051 None:intergenic 60.0%
CCAGCATCTGCCATCCCTGA+TGG - chr2_1:53024029-53024048 Msa0211590:intron 60.0%
GGCCGACCTAAGTGGAAAGG+GGG - chr2_1:53024624-53024643 Msa0211590:CDS 60.0%
AGCCACATATCCACCGGTGG+TGG - chr2_1:53024715-53024734 Msa0211590:CDS 60.0%
CACCACCACCGGTGGATATG+TGG + chr2_1:53024720-53024739 None:intergenic 60.0%
CAAACTTGCACCACCACCGG+TGG + chr2_1:53024728-53024747 None:intergenic 60.0%
! CACCGGTGGTGGTGCAAGTT+TGG - chr2_1:53024726-53024745 Msa0211590:CDS 60.0%
TCATCAAGGGCGAGGACACC+TGG + chr2_1:53024775-53024794 None:intergenic 60.0%
GTGTGGCTTCATCAAGGGCG+AGG + chr2_1:53024783-53024802 None:intergenic 60.0%
GTCTTACACGGCGACTGGTG+TGG + chr2_1:53024800-53024819 None:intergenic 60.0%
!! TGGGGTGGTGGATGGGGAAG+AGG + chr2_1:53021063-53021082 None:intergenic 65.0%
!! AGGGGGATGGGGTGGTGGAT+GGG + chr2_1:53021070-53021089 None:intergenic 65.0%
TTGGATGCGGGAGGGGGATG+GGG + chr2_1:53021081-53021100 None:intergenic 65.0%
GTTGGATGCGGGAGGGGGAT+GGG + chr2_1:53021082-53021101 None:intergenic 65.0%
AGTTGGATGCGGGAGGGGGA+TGG + chr2_1:53021083-53021102 None:intergenic 65.0%
GGAGAGTTGGATGCGGGAGG+GGG + chr2_1:53021087-53021106 None:intergenic 65.0%
CGAAGCCAAGTCGGCGGAGT+GGG + chr2_1:53021127-53021146 None:intergenic 65.0%
CTGCAGCGAAGCCAAGTCGG+CGG + chr2_1:53021133-53021152 None:intergenic 65.0%
CCCTTTGTTGGCCGTGCAGG+TGG - chr2_1:53021157-53021176 Msa0211590:CDS 65.0%
GCCACCTGCACGGCCAACAA+AGG + chr2_1:53021161-53021180 None:intergenic 65.0%
CACCTTCGACGCCACCTGCA+CGG + chr2_1:53021171-53021190 None:intergenic 65.0%
! TGCAGGTGGCGTCGAAGGTG+AGG - chr2_1:53021171-53021190 Msa0211590:CDS 65.0%
GTGGCTTCCCTTCCAGACGG+AGG - chr2_1:53022827-53022846 Msa0211590:intron 65.0%
CGCCCCTGATGCAAACAGCC+AGG - chr2_1:53023892-53023911 Msa0211590:intron 65.0%
!! GGGGGATGGGGTGGTGGATG+GGG + chr2_1:53021069-53021088 None:intergenic 70.0%
!! GAGGGGGATGGGGTGGTGGA+TGG + chr2_1:53021071-53021090 None:intergenic 70.0%
AGCCAAGTCGGCGGAGTGGG+CGG + chr2_1:53021124-53021143 None:intergenic 70.0%
GCGAAGCCAAGTCGGCGGAG+TGG + chr2_1:53021128-53021147 None:intergenic 70.0%
GATGCGGGAGGGGGATGGGG+TGG + chr2_1:53021078-53021097 None:intergenic 75.0%
!! TGGGCGGGCGCCGAGGAATG+AGG + chr2_1:53021108-53021127 None:intergenic 75.0%
GCCAAGTCGGCGGAGTGGGC+GGG + chr2_1:53021123-53021142 None:intergenic 75.0%
! GGCCGTGCAGGTGGCGTCGA+AGG - chr2_1:53021166-53021185 Msa0211590:CDS 75.0%
! GCGGGAGGGGGATGGGGTGG+TGG + chr2_1:53021075-53021094 None:intergenic 80.0%
!! GCCCGCCCACTCCGCCGACT+TGG - chr2_1:53021119-53021138 Msa0211590:three_prime_UTR 80.0%
!! GGCGGAGTGGGCGGGCGCCG+AGG + chr2_1:53021115-53021134 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 53020818 53025141 53020818 ID=Msa0211590;Name=Msa0211590
chr2_1 mRNA 53020818 53025141 53020818 ID=Msa0211590-mRNA-1;Parent=Msa0211590;Name=Msa0211590-mRNA-1;_AED=0.33;_eAED=0.33;_QI=190|1|1|1|1|1|6|325|479
chr2_1 exon 53020818 53021352 53020818 ID=Msa0211590-mRNA-1:exon:14757;Parent=Msa0211590-mRNA-1
chr2_1 exon 53021778 53021936 53021778 ID=Msa0211590-mRNA-1:exon:14756;Parent=Msa0211590-mRNA-1
chr2_1 exon 53022046 53022363 53022046 ID=Msa0211590-mRNA-1:exon:14755;Parent=Msa0211590-mRNA-1
chr2_1 exon 53022917 53023177 53022917 ID=Msa0211590-mRNA-1:exon:14754;Parent=Msa0211590-mRNA-1
chr2_1 exon 53023287 53023364 53023287 ID=Msa0211590-mRNA-1:exon:14753;Parent=Msa0211590-mRNA-1
chr2_1 exon 53024538 53025141 53024538 ID=Msa0211590-mRNA-1:exon:14752;Parent=Msa0211590-mRNA-1
chr2_1 five_prime_UTR 53024952 53025141 53024952 ID=Msa0211590-mRNA-1:five_prime_utr;Parent=Msa0211590-mRNA-1
chr2_1 CDS 53024538 53024951 53024538 ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1 CDS 53023287 53023364 53023287 ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1 CDS 53022917 53023177 53022917 ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1 CDS 53022046 53022363 53022046 ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1 CDS 53021778 53021936 53021778 ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1 CDS 53021143 53021352 53021143 ID=Msa0211590-mRNA-1:cds;Parent=Msa0211590-mRNA-1
chr2_1 three_prime_UTR 53020818 53021142 53020818 ID=Msa0211590-mRNA-1:three_prime_utr;Parent=Msa0211590-mRNA-1
Gene Sequence

>Msa0211590

ATGGCTTCAGCTACAGCCCCCACAACCATCTCACTCCTCCCCACCACTAAATCCTCTTCCCCATCCACCACCCCATCCCCCTCCCGCATCCAACTCTCCTCATTCCTCGGCGCCCGCCCACTCCGCCGACTTGGCTTCGCTGCAGCTGACCCTTTGTTGGCCGTGCAGGTGGCGTCGAAGGTGAGGACAGTAAGCGGGAGAGGAGTAAGAGGAGTGGTGTCGATGGCGAAGAAAAGTGTGGGAGATTTGAGTGGTGCGGAGTTAAAGGGAAAGAAGGTTTTTGTGAGAGCTGACTTGAATGTTCCTCTTGATGATAATCAGAATATTACTGATGATACTAGGATCCGTGCTGCTATTCCAACTATTAAATATCTAATTCAAAATGGTGCTAAAGTCATTCTTTCTAGTCATTTGGGAAGGCCAAAGGGTGTCACTCCCAAATACAGCTTGGCACCTCTTGTTCCCAGGCTCTCTGAACTCATTGGAATTGAGGTTATTAAGGCCGAAGACAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCCCTTCCAGACGGAGGAGTTCTACTTCTCGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCTGAACATGCAAAAAAGCTTGCCGCACTCGCAGATCTGTATGTGAATGATGCATTCGGTACTGCTCACAGGGCCCATGCATCAACAGAGGGAGTCACTAAATATTTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGAACTTGACTACCTTGTTGGGGCAGTATCAAGCCCAAAAAGGCCATTTGCTGCAATTGTGGGTGGTTCTAAGGTCTCATCTAAAATTGGAGTGATTGAGTCACTTCTAGAAAAAGTTGACATCCTTCTTCTCGGTGGAGGAATGATCTTCACATTTTACAAGGCACAAGGTCTTGCAGTTGGTTCATCCCTTGTAGAGGAAGATAAGTTAGATCTTGCTACAACACTAATTGCTAAAGCCAAGGCAAAGGGTGTGTCACTCTTGCTGCCAAGTGATGTGGTGATTGCAGACAAATTCGCCCCTGATGCAAACAGCCAGATCGTGCCAGCATCTGCCATCCCTGATGGTTGGATGGGATTGGACATTGGTCCAGATTCTATTAAAACATTCAATGAAGCATTGGATACCACCCAAACTATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGAACAGAGTCTATTGCAAAGAAGTTGGCCGACCTAAGTGGAAAGGGGGTGACAACTATTATTGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCCGATGTCATGAGCCACATATCCACCGGTGGTGGTGCAAGTTTGGAGCTATTGGAAGGCAAAGAGCTTCCAGGTGTCCTCGCCCTTGATGAAGCCACACCAGTCGCCGTGTAA

Protein sequence

>Msa0211590

MASATAPTTISLLPTTKSSSPSTTPSPSRIQLSSFLGARPLRRLGFAAADPLLAVQVASKVRTVSGRGVRGVVSMAKKSVGDLSGAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLIQNGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELIGIEVIKAEDSIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNDPEHAKKLAALADLYVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGMIFTFYKAQGLAVGSSLVEEDKLDLATTLIAKAKAKGVSLLLPSDVVIADKFAPDANSQIVPASAIPDGWMGLDIGPDSIKTFNEALDTTQTIIWNGPMGVFEFDKFAVGTESIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVLALDEATPVAV*