AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0431550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431550 MtrunA17_Chr3g0136321 95.951 247 4 3 1 243 1 245 2.06e-168 464
Msa0431550 MtrunA17_Chr4g0000421 47.368 76 35 3 118 189 132 206 9.69e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431550 AT5G21920.1 60.656 183 60 2 48 230 64 234 5.97e-70 215
Msa0431550 AT5G21920.2 59.813 107 42 1 48 154 64 169 5.32e-36 125
Msa0431550 AT4G27990.1 50.000 78 34 3 118 191 135 211 2.30e-14 70.1
Msa0431550 AT3G07430.1 48.718 78 35 3 118 191 149 225 4.28e-14 69.7

Find 93 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGATGGAGGGGAGAAAT+TGG 0.246722 3_2:+83581938 None:intergenic
GCATGTATGTTCATTTAAAT+AGG 0.259403 3_2:-83579987 Msa0431550:three_prime_UTR
CATTCTTACAGAATAGAAAA+TGG 0.329472 3_2:-83582081 Msa0431550:exon
AGAGAGTAGTTTGTTTAAGA+AGG 0.343444 3_2:+83581860 None:intergenic
AAGATTATCTATCTCATTGC+AGG 0.355844 3_2:-83582135 Msa0431550:five_prime_UTR
ATTATCGACGGCGTTGGAAA+TGG 0.365129 3_2:+83581920 None:intergenic
ACGGAGCTCAGACAGGATAA+TGG 0.369911 3_2:+83582110 None:intergenic
TTGAGAAAGGGGAATGCTAA+TGG 0.370536 3_2:+83581972 None:intergenic
GCTGGCTTAGTGGTGGCTAA+TGG 0.379478 3_2:-83581631 Msa0431550:CDS
AGCTAAGGAGTGGAGAAGTT+TGG 0.382379 3_2:+83581893 None:intergenic
TTACCTGGTGATTCCGTGGC+TGG 0.385685 3_2:-83581649 Msa0431550:CDS
GAGAGTAGTTTGTTTAAGAA+GGG 0.386231 3_2:+83581861 None:intergenic
TGAGAAAGGGGAATGCTAAT+GGG 0.387303 3_2:+83581973 None:intergenic
CGATATGATTCTAATAAACT+TGG 0.390295 3_2:+83579880 None:intergenic
TAACCTGTAGGCACGTGTTA+TGG 0.398782 3_2:+83581823 None:intergenic
TCTGTGACTGGAAGCTCAGC+AGG 0.408614 3_2:+83580160 None:intergenic
TTACTTCTTCACAGAACAAA+TGG 0.426880 3_2:-83580090 Msa0431550:CDS
CTGCCATCGTTGCTCCTCTC+AGG 0.431185 3_2:-83581531 Msa0431550:intron
CGGAGCTCAGACAGGATAAT+GGG 0.435288 3_2:+83582111 None:intergenic
ACAACACCTTGCTCGTTGCC+AGG 0.436913 3_2:-83581585 Msa0431550:CDS
AGGGGAGAAATTGGAGATGG+GGG 0.451216 3_2:+83581947 None:intergenic
TTAAATAGTACGAGAATTCA+AGG 0.452730 3_2:+83579846 None:intergenic
TTGCCAGGCTTGTTCTTACC+TGG 0.458380 3_2:-83581570 Msa0431550:CDS
GAGGGGAGAAATTGGAGATG+GGG 0.461207 3_2:+83581946 None:intergenic
TGAGGCGGCTTCAAGGGATC+GGG 0.461867 3_2:-83580066 Msa0431550:CDS
TGATTCCGTGGCTGGCTTAG+TGG 0.463142 3_2:-83581641 Msa0431550:CDS
CCACGGAATACATTCAAATA+CGG 0.466648 3_2:+83580271 None:intergenic
ATGAGGCGGCTTCAAGGGAT+CGG 0.480718 3_2:-83580067 Msa0431550:CDS
AAATGGATGAGGCGGCTTCA+AGG 0.483527 3_2:-83580073 Msa0431550:CDS
ACGATGGCAGGAGGAGCGTT+AGG 0.485173 3_2:+83581544 None:intergenic
CAGAACAAGGAATGCAAGGA+TGG 0.486196 3_2:+83580213 None:intergenic
TGCTTAGATTGTTCTGTGAC+TGG 0.486287 3_2:+83580148 None:intergenic
AATGGATGAGGCGGCTTCAA+GGG 0.495750 3_2:-83580072 Msa0431550:CDS
GGAGGGGAGAAATTGGAGAT+GGG 0.501879 3_2:+83581945 None:intergenic
GATGTTCTAATTTGCAGAAG+TGG 0.505099 3_2:+83580033 None:intergenic
GAGAAAGGGGAATGCTAATG+GGG 0.512370 3_2:+83581974 None:intergenic
AGAGTAGTTTGTTTAAGAAG+GGG 0.518070 3_2:+83581862 None:intergenic
TGGAGGGGAGAAATTGGAGA+TGG 0.518639 3_2:+83581944 None:intergenic
CTGAGAGGAGCAACGATGGC+AGG 0.520472 3_2:+83581532 None:intergenic
GGAACAATTATCGACGGCGT+TGG 0.521064 3_2:+83581914 None:intergenic
ATTCCATAACACGTGCCTAC+AGG 0.524499 3_2:-83581826 Msa0431550:intron
GTAACTACAGGAACAGTAGT+AGG 0.539864 3_2:-83581705 Msa0431550:CDS
TGCAGCAGCAGTGCTAGTGA+AGG 0.542097 3_2:+83580186 None:intergenic
AGGAGGAGCGTTAGGAAACC+AGG 0.547677 3_2:+83581552 None:intergenic
AAACCAGGTAAGAACAAGCC+TGG 0.548754 3_2:+83581567 None:intergenic
GAACTCTACGGAGCTCAGAC+AGG 0.548853 3_2:+83582103 None:intergenic
CTTCGTTTCTGTATCAGTGG+TGG 0.549154 3_2:+83582031 None:intergenic
TTCACAGTTATCATAGTCCT+AGG 0.551523 3_2:-83579951 Msa0431550:three_prime_UTR
GGCGTTGGAAATGGATGGAG+GGG 0.557766 3_2:+83581929 None:intergenic
CTTCTTCGTTTCTGTATCAG+TGG 0.559382 3_2:+83582028 None:intergenic
CGTATTTGAATGTATTCCGT+GGG 0.560273 3_2:-83580270 Msa0431550:CDS
GCTCGAAAATTGTGTTGCCT+AGG 0.560477 3_2:+83579934 None:intergenic
AACAAGCCTGGCAACGAGCA+AGG 0.565234 3_2:+83581579 None:intergenic
GGCAAACACAAATAAAATGA+AGG 0.565813 3_2:+83579791 None:intergenic
TAGAAAATGGCCGTTATGAA+CGG 0.567715 3_2:-83582068 Msa0431550:exon
TAAATAGTACGAGAATTCAA+GGG 0.568271 3_2:+83579847 None:intergenic
CCGTATTTGAATGTATTCCG+TGG 0.568529 3_2:-83580271 Msa0431550:CDS
CACGGAATACATTCAAATAC+GGG 0.572341 3_2:+83580272 None:intergenic
AGATTCGGTGCAGTAACTAC+AGG 0.574341 3_2:-83581717 Msa0431550:CDS
AGAGATCCAGTCCACCGAGA+GGG 0.575748 3_2:+83580239 None:intergenic
ATTCAAATACGGGTCACATA+CGG 0.577203 3_2:+83580282 None:intergenic
CGGCGTTGGAAATGGATGGA+GGG 0.581108 3_2:+83581928 None:intergenic
AGATCCAGTCCACCGAGAGG+GGG 0.582086 3_2:+83580241 None:intergenic
AGAACAAGGAATGCAAGGAT+GGG 0.585406 3_2:+83580214 None:intergenic
TCGACGGCGTTGGAAATGGA+TGG 0.585432 3_2:+83581924 None:intergenic
TAGTGAAGGCATTCAGAACA+AGG 0.586028 3_2:+83580200 None:intergenic
CATTCAGAACAAGGAATGCA+AGG 0.587879 3_2:+83580209 None:intergenic
CACAGAACAAATGGATGAGG+CGG 0.594547 3_2:-83580081 Msa0431550:CDS
AAGCCAGCCACGGAATCACC+AGG 0.598530 3_2:+83581646 None:intergenic
TTCTGTAAGAATGAACTCTA+CGG 0.599286 3_2:+83582091 None:intergenic
ACGGCGTTGGAAATGGATGG+AGG 0.600079 3_2:+83581927 None:intergenic
GTTCTAATTTGCAGAAGTGG+AGG 0.600682 3_2:+83580036 None:intergenic
GATCCAGTCCACCGAGAGGG+GGG 0.602974 3_2:+83580242 None:intergenic
TGTGAAGAAGTAACGTCGGT+AGG 0.608391 3_2:+83580100 None:intergenic
CGAGTCGCAACCGTTCATAA+CGG 0.615766 3_2:+83582058 None:intergenic
CTTCACAGAACAAATGGATG+AGG 0.621441 3_2:-83580084 Msa0431550:CDS
TTCCGTGGCTGGCTTAGTGG+TGG 0.624704 3_2:-83581638 Msa0431550:CDS
TGACCTGAGAGGAGCAACGA+TGG 0.624970 3_2:+83581528 None:intergenic
GAGATCCAGTCCACCGAGAG+GGG 0.626757 3_2:+83580240 None:intergenic
AGAGGAGCAACGATGGCAGG+AGG 0.633054 3_2:+83581535 None:intergenic
CTGTGACTGGAAGCTCAGCA+GGG 0.634111 3_2:+83580161 None:intergenic
GTCACAGAACAATCTAAGCA+AGG 0.634902 3_2:-83580145 Msa0431550:CDS
ACTACAGGAACAGTAGTAGG+TGG 0.635762 3_2:-83581702 Msa0431550:CDS
AGCCACCACTAAGCCAGCCA+CGG 0.636007 3_2:+83581636 None:intergenic
AAGTTTGGAACAATTATCGA+CGG 0.638484 3_2:+83581908 None:intergenic
TTAAATGAACATACATGCAG+AGG 0.640529 3_2:+83579992 None:intergenic
AAATAGTACGAGAATTCAAG+GGG 0.649880 3_2:+83579848 None:intergenic
GCACGTGTTATGGAATTGAG+AGG 0.651865 3_2:+83581833 None:intergenic
GAGAGATCCAGTCCACCGAG+AGG 0.664113 3_2:+83580238 None:intergenic
CTACAGGAACAGTAGTAGGT+GGG 0.671134 3_2:-83581701 Msa0431550:CDS
GTTCTGTGAAGAAGTAACGT+CGG 0.698371 3_2:+83580096 None:intergenic
AGAAATGTGACTGACCTGAG+AGG 0.708018 3_2:+83581517 None:intergenic
GGAATCACCAGGTAAAACAG+CGG 0.751307 3_2:+83581657 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTTTCTATCAATATC+TGG + chr3_2:83580530-83580549 None:intergenic 15.0%
!! ATTGATAGAAAATTATAGAA+TGG - chr3_2:83580533-83580552 Msa0431550:intron 15.0%
!!! TCAAATATTTTCTACATAAA+TGG + chr3_2:83581455-83581474 None:intergenic 15.0%
!!! TATAATTTTCTATCAATATC+TGG + chr3_2:83580530-83580549 None:intergenic 15.0%
!! ATTGATAGAAAATTATAGAA+TGG - chr3_2:83580533-83580552 Msa0431550:intron 15.0%
!!! TCAAATATTTTCTACATAAA+TGG + chr3_2:83581455-83581474 None:intergenic 15.0%
!! ATAGAAAATTATAGAATGGT+TGG - chr3_2:83580537-83580556 Msa0431550:intron 20.0%
!!! TTTTTTTTTGTTGAAATGCA+AGG - chr3_2:83580623-83580642 Msa0431550:intron 20.0%
!! TTGAATTATTAACAAAGTCA+CGG + chr3_2:83580721-83580740 None:intergenic 20.0%
!! CATTAAATAATTAGCTACAT+TGG + chr3_2:83581607-83581626 None:intergenic 20.0%
!! AAAAATATCATATGAATCAC+AGG + chr3_2:83582074-83582093 None:intergenic 20.0%
!! ATAGAAAATTATAGAATGGT+TGG - chr3_2:83580537-83580556 Msa0431550:intron 20.0%
!!! TTTTTTTTTGTTGAAATGCA+AGG - chr3_2:83580623-83580642 Msa0431550:intron 20.0%
!! TTGAATTATTAACAAAGTCA+CGG + chr3_2:83580721-83580740 None:intergenic 20.0%
!! CATTAAATAATTAGCTACAT+TGG + chr3_2:83581607-83581626 None:intergenic 20.0%
!! AAAAATATCATATGAATCAC+AGG + chr3_2:83582074-83582093 None:intergenic 20.0%
! CATTCTTACAGAATAGAAAA+TGG - chr3_2:83579902-83579921 Msa0431550:three_prime_UTR 25.0%
!! AAAATTTTATCTTCCATGAG+TGG - chr3_2:83580576-83580595 Msa0431550:intron 25.0%
!!! AATGTTTTTGTCACATGATA+TGG - chr3_2:83580788-83580807 Msa0431550:intron 25.0%
!!! ATGTTTTTGTCACATGATAT+GGG - chr3_2:83580789-83580808 Msa0431550:intron 25.0%
! TTGTCAAAAGTTTCACAATT+GGG + chr3_2:83580816-83580835 None:intergenic 25.0%
!! CTAGTTTGAAATCTTAACAA+AGG - chr3_2:83580844-83580863 Msa0431550:intron 25.0%
!! AACTCTTTTCTAATTGAGTA+TGG + chr3_2:83580936-83580955 None:intergenic 25.0%
! TAGCATTTCTCTTAGAAAAA+TGG - chr3_2:83581132-83581151 Msa0431550:intron 25.0%
! AGCATTTCTCTTAGAAAAAT+GGG - chr3_2:83581133-83581152 Msa0431550:intron 25.0%
!! ACCATTTGATTTCAATCAAA+TGG + chr3_2:83581332-83581351 None:intergenic 25.0%
! CGTAGATAGTTAAATTCTAT+TGG + chr3_2:83581499-83581518 None:intergenic 25.0%
!! GCATCATACATCAAATATTT+TGG + chr3_2:83581530-83581549 None:intergenic 25.0%
! ACAACATACTCAGATTTAAT+TGG - chr3_2:83581631-83581650 Msa0431550:CDS 25.0%
! GCATGTATGTTCATTTAAAT+AGG - chr3_2:83581996-83582015 Msa0431550:CDS 25.0%
! CGATATGATTCTAATAAACT+TGG + chr3_2:83582106-83582125 None:intergenic 25.0%
! TAAATAGTACGAGAATTCAA+GGG + chr3_2:83582139-83582158 None:intergenic 25.0%
! TTAAATAGTACGAGAATTCA+AGG + chr3_2:83582140-83582159 None:intergenic 25.0%
! CATTCTTACAGAATAGAAAA+TGG - chr3_2:83579902-83579921 Msa0431550:three_prime_UTR 25.0%
!! AAAATTTTATCTTCCATGAG+TGG - chr3_2:83580576-83580595 Msa0431550:intron 25.0%
!!! AATGTTTTTGTCACATGATA+TGG - chr3_2:83580788-83580807 Msa0431550:intron 25.0%
!!! ATGTTTTTGTCACATGATAT+GGG - chr3_2:83580789-83580808 Msa0431550:intron 25.0%
! TTGTCAAAAGTTTCACAATT+GGG + chr3_2:83580816-83580835 None:intergenic 25.0%
!! CTAGTTTGAAATCTTAACAA+AGG - chr3_2:83580844-83580863 Msa0431550:intron 25.0%
!! AACTCTTTTCTAATTGAGTA+TGG + chr3_2:83580936-83580955 None:intergenic 25.0%
! TAGCATTTCTCTTAGAAAAA+TGG - chr3_2:83581132-83581151 Msa0431550:intron 25.0%
! AGCATTTCTCTTAGAAAAAT+GGG - chr3_2:83581133-83581152 Msa0431550:intron 25.0%
!! ACCATTTGATTTCAATCAAA+TGG + chr3_2:83581332-83581351 None:intergenic 25.0%
! CGTAGATAGTTAAATTCTAT+TGG + chr3_2:83581499-83581518 None:intergenic 25.0%
!! GCATCATACATCAAATATTT+TGG + chr3_2:83581530-83581549 None:intergenic 25.0%
! ACAACATACTCAGATTTAAT+TGG - chr3_2:83581631-83581650 Msa0431550:CDS 25.0%
! GCATGTATGTTCATTTAAAT+AGG - chr3_2:83581996-83582015 Msa0431550:CDS 25.0%
! CGATATGATTCTAATAAACT+TGG + chr3_2:83582106-83582125 None:intergenic 25.0%
! TAAATAGTACGAGAATTCAA+GGG + chr3_2:83582139-83582158 None:intergenic 25.0%
! TTAAATAGTACGAGAATTCA+AGG + chr3_2:83582140-83582159 None:intergenic 25.0%
AAGATTATCTATCTCATTGC+AGG - chr3_2:83579848-83579867 Msa0431550:three_prime_UTR 30.0%
TTCTGTAAGAATGAACTCTA+CGG + chr3_2:83579895-83579914 None:intergenic 30.0%
! AAGTTTGGAACAATTATCGA+CGG + chr3_2:83580078-83580097 None:intergenic 30.0%
!! AGAGTAGTTTGTTTAAGAAG+GGG + chr3_2:83580124-83580143 None:intergenic 30.0%
!! GAGAGTAGTTTGTTTAAGAA+GGG + chr3_2:83580125-83580144 None:intergenic 30.0%
!! AGAGAGTAGTTTGTTTAAGA+AGG + chr3_2:83580126-83580145 None:intergenic 30.0%
GAAAATTATAGAATGGTTGG+AGG - chr3_2:83580540-83580559 Msa0431550:intron 30.0%
TACAAAGATAGGTACCAATT+TGG + chr3_2:83580680-83580699 None:intergenic 30.0%
!! TTCAAACTAGTCTCTGTTTT+TGG - chr3_2:83580736-83580755 Msa0431550:intron 30.0%
GTGACAAAAACATTAAGACA+GGG + chr3_2:83580782-83580801 None:intergenic 30.0%
TGTGACAAAAACATTAAGAC+AGG + chr3_2:83580783-83580802 None:intergenic 30.0%
CTTGTCAAAAGTTTCACAAT+TGG + chr3_2:83580817-83580836 None:intergenic 30.0%
! AGTGTTTCACGAATTGTTTT+TGG - chr3_2:83580994-83581013 Msa0431550:intron 30.0%
! TAAGAGAAATGCTACTTGTA+GGG + chr3_2:83581126-83581145 None:intergenic 30.0%
ACATGTAAGTTCCATACTTA+AGG - chr3_2:83581204-83581223 Msa0431550:intron 30.0%
GCCATTTGATTGAAATCAAA+TGG - chr3_2:83581328-83581347 Msa0431550:intron 30.0%
! GATGATTGAAATTTTCTTGC+AGG - chr3_2:83581408-83581427 Msa0431550:intron 30.0%
GTAGAAAATATTTGAGTAGC+TGG - chr3_2:83581460-83581479 Msa0431550:intron 30.0%
TTACTTCTTCACAGAACAAA+TGG - chr3_2:83581893-83581912 Msa0431550:CDS 30.0%
TTAAATGAACATACATGCAG+AGG + chr3_2:83581994-83582013 None:intergenic 30.0%
AAATAGTACGAGAATTCAAG+GGG + chr3_2:83582138-83582157 None:intergenic 30.0%
GGCAAACACAAATAAAATGA+AGG + chr3_2:83582195-83582214 None:intergenic 30.0%
AAGATTATCTATCTCATTGC+AGG - chr3_2:83579848-83579867 Msa0431550:three_prime_UTR 30.0%
TTCTGTAAGAATGAACTCTA+CGG + chr3_2:83579895-83579914 None:intergenic 30.0%
! AAGTTTGGAACAATTATCGA+CGG + chr3_2:83580078-83580097 None:intergenic 30.0%
!! AGAGTAGTTTGTTTAAGAAG+GGG + chr3_2:83580124-83580143 None:intergenic 30.0%
!! GAGAGTAGTTTGTTTAAGAA+GGG + chr3_2:83580125-83580144 None:intergenic 30.0%
!! AGAGAGTAGTTTGTTTAAGA+AGG + chr3_2:83580126-83580145 None:intergenic 30.0%
GAAAATTATAGAATGGTTGG+AGG - chr3_2:83580540-83580559 Msa0431550:intron 30.0%
TACAAAGATAGGTACCAATT+TGG + chr3_2:83580680-83580699 None:intergenic 30.0%
!! TTCAAACTAGTCTCTGTTTT+TGG - chr3_2:83580736-83580755 Msa0431550:intron 30.0%
GTGACAAAAACATTAAGACA+GGG + chr3_2:83580782-83580801 None:intergenic 30.0%
TGTGACAAAAACATTAAGAC+AGG + chr3_2:83580783-83580802 None:intergenic 30.0%
CTTGTCAAAAGTTTCACAAT+TGG + chr3_2:83580817-83580836 None:intergenic 30.0%
! AGTGTTTCACGAATTGTTTT+TGG - chr3_2:83580994-83581013 Msa0431550:intron 30.0%
! TAAGAGAAATGCTACTTGTA+GGG + chr3_2:83581126-83581145 None:intergenic 30.0%
ACATGTAAGTTCCATACTTA+AGG - chr3_2:83581204-83581223 Msa0431550:intron 30.0%
GCCATTTGATTGAAATCAAA+TGG - chr3_2:83581328-83581347 Msa0431550:intron 30.0%
! GATGATTGAAATTTTCTTGC+AGG - chr3_2:83581408-83581427 Msa0431550:intron 30.0%
GTAGAAAATATTTGAGTAGC+TGG - chr3_2:83581460-83581479 Msa0431550:intron 30.0%
TTACTTCTTCACAGAACAAA+TGG - chr3_2:83581893-83581912 Msa0431550:CDS 30.0%
TTAAATGAACATACATGCAG+AGG + chr3_2:83581994-83582013 None:intergenic 30.0%
AAATAGTACGAGAATTCAAG+GGG + chr3_2:83582138-83582157 None:intergenic 30.0%
GGCAAACACAAATAAAATGA+AGG + chr3_2:83582195-83582214 None:intergenic 30.0%
TAGAAAATGGCCGTTATGAA+CGG - chr3_2:83579915-83579934 Msa0431550:three_prime_UTR 35.0%
! TGCAACTTTTACTAACCTGT+AGG + chr3_2:83580175-83580194 None:intergenic 35.0%
CTAACATGTTAGTCACAATG+TGG - chr3_2:83580498-83580517 Msa0431550:intron 35.0%
GAATGAGTAAACCACCAAAT+TGG - chr3_2:83580663-83580682 Msa0431550:intron 35.0%
AAAGATAGGTACCAATTTGG+TGG + chr3_2:83580677-83580696 None:intergenic 35.0%
! ACAAAGTCACGGACTAATTT+GGG + chr3_2:83580710-83580729 None:intergenic 35.0%
! AACAAAGTCACGGACTAATT+TGG + chr3_2:83580711-83580730 None:intergenic 35.0%
TTGGCAAAAGTTTCTCGATT+CGG - chr3_2:83580755-83580774 Msa0431550:intron 35.0%
TACAAAGATAGGGACCAATT+TGG - chr3_2:83580890-83580909 Msa0431550:intron 35.0%
CTAAGAGTAAACCACCAAAT+TGG + chr3_2:83580907-83580926 None:intergenic 35.0%
! ATTTGGTGGTTTACTCTTAG+TGG - chr3_2:83580907-83580926 Msa0431550:intron 35.0%
!!! CACGAATTGTTTTTGGTCAT+TGG - chr3_2:83581001-83581020 Msa0431550:intron 35.0%
TTCCACTTTAGTGGAATACA+TGG - chr3_2:83581027-83581046 Msa0431550:intron 35.0%
TCCACTTTAGTGGAATACAT+GGG - chr3_2:83581028-83581047 Msa0431550:intron 35.0%
GTGGTTACACAAGAATTACA+AGG - chr3_2:83581050-83581069 Msa0431550:intron 35.0%
ACACAAGAATTACAAGGTGA+AGG - chr3_2:83581056-83581075 Msa0431550:intron 35.0%
! CTAAGAGAAATGCTACTTGT+AGG + chr3_2:83581127-83581146 None:intergenic 35.0%
! AGAAAAATGGGATGCTTTTG+AGG - chr3_2:83581145-83581164 Msa0431550:intron 35.0%
ATTCAAATACGGGTCACATA+CGG + chr3_2:83581704-83581723 None:intergenic 35.0%
CACGGAATACATTCAAATAC+GGG + chr3_2:83581714-83581733 None:intergenic 35.0%
CCACGGAATACATTCAAATA+CGG + chr3_2:83581715-83581734 None:intergenic 35.0%
CGTATTTGAATGTATTCCGT+GGG - chr3_2:83581713-83581732 Msa0431550:CDS 35.0%
! GATGTTCTAATTTGCAGAAG+TGG + chr3_2:83581953-83581972 None:intergenic 35.0%
TTCACAGTTATCATAGTCCT+AGG - chr3_2:83582032-83582051 Msa0431550:CDS 35.0%
!!! TTTGAACGTGGCTTGTTTTA+AGG + chr3_2:83579792-83579811 None:intergenic 35.0%
TAGAAAATGGCCGTTATGAA+CGG - chr3_2:83579915-83579934 Msa0431550:three_prime_UTR 35.0%
! TGCAACTTTTACTAACCTGT+AGG + chr3_2:83580175-83580194 None:intergenic 35.0%
CTAACATGTTAGTCACAATG+TGG - chr3_2:83580498-83580517 Msa0431550:intron 35.0%
GAATGAGTAAACCACCAAAT+TGG - chr3_2:83580663-83580682 Msa0431550:intron 35.0%
AAAGATAGGTACCAATTTGG+TGG + chr3_2:83580677-83580696 None:intergenic 35.0%
! ACAAAGTCACGGACTAATTT+GGG + chr3_2:83580710-83580729 None:intergenic 35.0%
! AACAAAGTCACGGACTAATT+TGG + chr3_2:83580711-83580730 None:intergenic 35.0%
TTGGCAAAAGTTTCTCGATT+CGG - chr3_2:83580755-83580774 Msa0431550:intron 35.0%
TACAAAGATAGGGACCAATT+TGG - chr3_2:83580890-83580909 Msa0431550:intron 35.0%
CTAAGAGTAAACCACCAAAT+TGG + chr3_2:83580907-83580926 None:intergenic 35.0%
! ATTTGGTGGTTTACTCTTAG+TGG - chr3_2:83580907-83580926 Msa0431550:intron 35.0%
!!! CACGAATTGTTTTTGGTCAT+TGG - chr3_2:83581001-83581020 Msa0431550:intron 35.0%
TTCCACTTTAGTGGAATACA+TGG - chr3_2:83581027-83581046 Msa0431550:intron 35.0%
TCCACTTTAGTGGAATACAT+GGG - chr3_2:83581028-83581047 Msa0431550:intron 35.0%
GTGGTTACACAAGAATTACA+AGG - chr3_2:83581050-83581069 Msa0431550:intron 35.0%
ACACAAGAATTACAAGGTGA+AGG - chr3_2:83581056-83581075 Msa0431550:intron 35.0%
! CTAAGAGAAATGCTACTTGT+AGG + chr3_2:83581127-83581146 None:intergenic 35.0%
! AGAAAAATGGGATGCTTTTG+AGG - chr3_2:83581145-83581164 Msa0431550:intron 35.0%
ATTCAAATACGGGTCACATA+CGG + chr3_2:83581704-83581723 None:intergenic 35.0%
CACGGAATACATTCAAATAC+GGG + chr3_2:83581714-83581733 None:intergenic 35.0%
CCACGGAATACATTCAAATA+CGG + chr3_2:83581715-83581734 None:intergenic 35.0%
CGTATTTGAATGTATTCCGT+GGG - chr3_2:83581713-83581732 Msa0431550:CDS 35.0%
! GATGTTCTAATTTGCAGAAG+TGG + chr3_2:83581953-83581972 None:intergenic 35.0%
TTCACAGTTATCATAGTCCT+AGG - chr3_2:83582032-83582051 Msa0431550:CDS 35.0%
!! CACAGCTGTATTTTTGAACG+TGG + chr3_2:83579804-83579823 None:intergenic 40.0%
CACGTTCAAAAATACAGCTG+TGG - chr3_2:83579802-83579821 Msa0431550:three_prime_UTR 40.0%
TCAAAAATACAGCTGTGGTG+TGG - chr3_2:83579807-83579826 Msa0431550:three_prime_UTR 40.0%
CTTCTTCGTTTCTGTATCAG+TGG + chr3_2:83579958-83579977 None:intergenic 40.0%
! AGAAGAACGTCTCGTTTTGT+TGG - chr3_2:83579973-83579992 Msa0431550:three_prime_UTR 40.0%
!! GAAGAACGTCTCGTTTTGTT+GGG - chr3_2:83579974-83579993 Msa0431550:three_prime_UTR 40.0%
!! AAGAACGTCTCGTTTTGTTG+GGG - chr3_2:83579975-83579994 Msa0431550:three_prime_UTR 40.0%
TGAGAAAGGGGAATGCTAAT+GGG + chr3_2:83580013-83580032 None:intergenic 40.0%
TTGAGAAAGGGGAATGCTAA+TGG + chr3_2:83580014-83580033 None:intergenic 40.0%
TATGCTTCGTCTACCAGATT+CGG - chr3_2:83580251-83580270 Msa0431550:CDS 40.0%
GTAACTACAGGAACAGTAGT+AGG - chr3_2:83580278-83580297 Msa0431550:CDS 40.0%
!! AATTTTGCCGCTGTTTTACC+TGG - chr3_2:83580319-83580338 Msa0431550:intron 40.0%
AATGCACTGTTATCCACTCA+TGG + chr3_2:83580592-83580611 None:intergenic 40.0%
TTTGTTGAAATGCAAGGACG+TGG - chr3_2:83580629-83580648 Msa0431550:intron 40.0%
TTGTTGAAATGCAAGGACGT+GGG - chr3_2:83580630-83580649 Msa0431550:intron 40.0%
TGGGAGTAGCTTACAAAGAT+AGG + chr3_2:83580691-83580710 None:intergenic 40.0%
TGAGAGAGGCTTACAAAGAT+AGG - chr3_2:83580879-83580898 Msa0431550:intron 40.0%
GAGAGAGGCTTACAAAGATA+GGG - chr3_2:83580880-83580899 Msa0431550:intron 40.0%
AAAGATAGGGACCAATTTGG+TGG - chr3_2:83580893-83580912 Msa0431550:intron 40.0%
CATTGGATCTTCCACTTTAG+TGG - chr3_2:83581018-83581037 Msa0431550:intron 40.0%
ACCCATGTATTCCACTAAAG+TGG + chr3_2:83581032-83581051 None:intergenic 40.0%
ACTTTAGTGGAATACATGGG+TGG - chr3_2:83581031-83581050 Msa0431550:intron 40.0%
!! AAAATGGGATGCTTTTGAGG+TGG - chr3_2:83581148-83581167 Msa0431550:intron 40.0%
TTGAGGTGGTTGTGTTGAAA+AGG - chr3_2:83581162-83581181 Msa0431550:intron 40.0%
TGAGGTGGTTGTGTTGAAAA+GGG - chr3_2:83581163-83581182 Msa0431550:intron 40.0%
TAAGTTCCATACTTAAGGCC+AGG - chr3_2:83581209-83581228 Msa0431550:intron 40.0%
AAGTTCCATACTTAAGGCCA+GGG - chr3_2:83581210-83581229 Msa0431550:intron 40.0%
! TAGGTTGGATGCTATTAGAG+AGG - chr3_2:83581258-83581277 Msa0431550:intron 40.0%
AGGTTGGATGCTATTAGAGA+GGG - chr3_2:83581259-83581278 Msa0431550:intron 40.0%
ACCTAGATTCTCTACGGTTA+GGG - chr3_2:83581282-83581301 Msa0431550:intron 40.0%
GAATCCTATCGTCAATGCAT+TGG - chr3_2:83581304-83581323 Msa0431550:intron 40.0%
TTTGAGTAGCTGGATGCAAT+TGG - chr3_2:83581470-83581489 Msa0431550:intron 40.0%
CTTCACGTTTCTTCACTTCT+CGG - chr3_2:83581561-83581580 Msa0431550:CDS 40.0%
CCGTATTTGAATGTATTCCG+TGG - chr3_2:83581712-83581731 Msa0431550:CDS 40.0%
AGAACAAGGAATGCAAGGAT+GGG + chr3_2:83581772-83581791 None:intergenic 40.0%
CATTCAGAACAAGGAATGCA+AGG + chr3_2:83581777-83581796 None:intergenic 40.0%
!! TAGTGAAGGCATTCAGAACA+AGG + chr3_2:83581786-83581805 None:intergenic 40.0%
TGCTTAGATTGTTCTGTGAC+TGG + chr3_2:83581838-83581857 None:intergenic 40.0%
GTCACAGAACAATCTAAGCA+AGG - chr3_2:83581838-83581857 Msa0431550:CDS 40.0%
GTTCTGTGAAGAAGTAACGT+CGG + chr3_2:83581890-83581909 None:intergenic 40.0%
CTTCACAGAACAAATGGATG+AGG - chr3_2:83581899-83581918 Msa0431550:CDS 40.0%
! GTTCTAATTTGCAGAAGTGG+AGG + chr3_2:83581950-83581969 None:intergenic 40.0%
!! CACAGCTGTATTTTTGAACG+TGG + chr3_2:83579804-83579823 None:intergenic 40.0%
CACGTTCAAAAATACAGCTG+TGG - chr3_2:83579802-83579821 Msa0431550:three_prime_UTR 40.0%
TCAAAAATACAGCTGTGGTG+TGG - chr3_2:83579807-83579826 Msa0431550:three_prime_UTR 40.0%
CTTCTTCGTTTCTGTATCAG+TGG + chr3_2:83579958-83579977 None:intergenic 40.0%
! AGAAGAACGTCTCGTTTTGT+TGG - chr3_2:83579973-83579992 Msa0431550:three_prime_UTR 40.0%
!! GAAGAACGTCTCGTTTTGTT+GGG - chr3_2:83579974-83579993 Msa0431550:three_prime_UTR 40.0%
!! AAGAACGTCTCGTTTTGTTG+GGG - chr3_2:83579975-83579994 Msa0431550:three_prime_UTR 40.0%
TGAGAAAGGGGAATGCTAAT+GGG + chr3_2:83580013-83580032 None:intergenic 40.0%
TTGAGAAAGGGGAATGCTAA+TGG + chr3_2:83580014-83580033 None:intergenic 40.0%
TATGCTTCGTCTACCAGATT+CGG - chr3_2:83580251-83580270 Msa0431550:CDS 40.0%
GTAACTACAGGAACAGTAGT+AGG - chr3_2:83580278-83580297 Msa0431550:CDS 40.0%
!! AATTTTGCCGCTGTTTTACC+TGG - chr3_2:83580319-83580338 Msa0431550:intron 40.0%
AATGCACTGTTATCCACTCA+TGG + chr3_2:83580592-83580611 None:intergenic 40.0%
TTTGTTGAAATGCAAGGACG+TGG - chr3_2:83580629-83580648 Msa0431550:intron 40.0%
TTGTTGAAATGCAAGGACGT+GGG - chr3_2:83580630-83580649 Msa0431550:intron 40.0%
TGGGAGTAGCTTACAAAGAT+AGG + chr3_2:83580691-83580710 None:intergenic 40.0%
TGAGAGAGGCTTACAAAGAT+AGG - chr3_2:83580879-83580898 Msa0431550:intron 40.0%
GAGAGAGGCTTACAAAGATA+GGG - chr3_2:83580880-83580899 Msa0431550:intron 40.0%
AAAGATAGGGACCAATTTGG+TGG - chr3_2:83580893-83580912 Msa0431550:intron 40.0%
CATTGGATCTTCCACTTTAG+TGG - chr3_2:83581018-83581037 Msa0431550:intron 40.0%
ACCCATGTATTCCACTAAAG+TGG + chr3_2:83581032-83581051 None:intergenic 40.0%
ACTTTAGTGGAATACATGGG+TGG - chr3_2:83581031-83581050 Msa0431550:intron 40.0%
!! AAAATGGGATGCTTTTGAGG+TGG - chr3_2:83581148-83581167 Msa0431550:intron 40.0%
TTGAGGTGGTTGTGTTGAAA+AGG - chr3_2:83581162-83581181 Msa0431550:intron 40.0%
TGAGGTGGTTGTGTTGAAAA+GGG - chr3_2:83581163-83581182 Msa0431550:intron 40.0%
TAAGTTCCATACTTAAGGCC+AGG - chr3_2:83581209-83581228 Msa0431550:intron 40.0%
AAGTTCCATACTTAAGGCCA+GGG - chr3_2:83581210-83581229 Msa0431550:intron 40.0%
! TAGGTTGGATGCTATTAGAG+AGG - chr3_2:83581258-83581277 Msa0431550:intron 40.0%
AGGTTGGATGCTATTAGAGA+GGG - chr3_2:83581259-83581278 Msa0431550:intron 40.0%
ACCTAGATTCTCTACGGTTA+GGG - chr3_2:83581282-83581301 Msa0431550:intron 40.0%
GAATCCTATCGTCAATGCAT+TGG - chr3_2:83581304-83581323 Msa0431550:intron 40.0%
TTTGAGTAGCTGGATGCAAT+TGG - chr3_2:83581470-83581489 Msa0431550:intron 40.0%
CTTCACGTTTCTTCACTTCT+CGG - chr3_2:83581561-83581580 Msa0431550:CDS 40.0%
CCGTATTTGAATGTATTCCG+TGG - chr3_2:83581712-83581731 Msa0431550:CDS 40.0%
AGAACAAGGAATGCAAGGAT+GGG + chr3_2:83581772-83581791 None:intergenic 40.0%
CATTCAGAACAAGGAATGCA+AGG + chr3_2:83581777-83581796 None:intergenic 40.0%
!! TAGTGAAGGCATTCAGAACA+AGG + chr3_2:83581786-83581805 None:intergenic 40.0%
TGCTTAGATTGTTCTGTGAC+TGG + chr3_2:83581838-83581857 None:intergenic 40.0%
GTCACAGAACAATCTAAGCA+AGG - chr3_2:83581838-83581857 Msa0431550:CDS 40.0%
GTTCTGTGAAGAAGTAACGT+CGG + chr3_2:83581890-83581909 None:intergenic 40.0%
CTTCACAGAACAAATGGATG+AGG - chr3_2:83581899-83581918 Msa0431550:CDS 40.0%
! GTTCTAATTTGCAGAAGTGG+AGG + chr3_2:83581950-83581969 None:intergenic 40.0%
CTTCGTTTCTGTATCAGTGG+TGG + chr3_2:83579955-83579974 None:intergenic 45.0%
GAGAAAGGGGAATGCTAATG+GGG + chr3_2:83580012-83580031 None:intergenic 45.0%
AGATGGGGGATTTGAGAAAG+GGG + chr3_2:83580025-83580044 None:intergenic 45.0%
GAGATGGGGGATTTGAGAAA+GGG + chr3_2:83580026-83580045 None:intergenic 45.0%
AATGGATGGAGGGGAGAAAT+TGG + chr3_2:83580048-83580067 None:intergenic 45.0%
! ATTATCGACGGCGTTGGAAA+TGG + chr3_2:83580066-83580085 None:intergenic 45.0%
AGCTAAGGAGTGGAGAAGTT+TGG + chr3_2:83580093-83580112 None:intergenic 45.0%
!!! GGTTTTGAGAAGCTAAGGAG+TGG + chr3_2:83580103-83580122 None:intergenic 45.0%
!!! GAAGGGGTTTTGAGAAGCTA+AGG + chr3_2:83580108-83580127 None:intergenic 45.0%
GCACGTGTTATGGAATTGAG+AGG + chr3_2:83580153-83580172 None:intergenic 45.0%
ATTCCATAACACGTGCCTAC+AGG - chr3_2:83580157-83580176 Msa0431550:CDS 45.0%
TAACCTGTAGGCACGTGTTA+TGG + chr3_2:83580163-83580182 None:intergenic 45.0%
TGTAGTTACTGCACCGAATC+TGG + chr3_2:83580267-83580286 None:intergenic 45.0%
!! AGATTCGGTGCAGTAACTAC+AGG - chr3_2:83580266-83580285 Msa0431550:CDS 45.0%
ACTACAGGAACAGTAGTAGG+TGG - chr3_2:83580281-83580300 Msa0431550:CDS 45.0%
CTACAGGAACAGTAGTAGGT+GGG - chr3_2:83580282-83580301 Msa0431550:CDS 45.0%
GGAATCACCAGGTAAAACAG+CGG + chr3_2:83580329-83580348 None:intergenic 45.0%
! TGTTTTACCTGGTGATTCCG+TGG - chr3_2:83580330-83580349 Msa0431550:intron 45.0%
AAACCAGGTAAGAACAAGCC+TGG + chr3_2:83580419-83580438 None:intergenic 45.0%
AGAAATGTGACTGACCTGAG+AGG + chr3_2:83580469-83580488 None:intergenic 45.0%
TGTTGAAATGCAAGGACGTG+GGG - chr3_2:83580631-83580650 Msa0431550:intron 45.0%
!! CAATTCCCTGGCCTTAAGTA+TGG + chr3_2:83581218-83581237 None:intergenic 45.0%
TTAAGGCCAGGGAATTGCAA+TGG - chr3_2:83581221-83581240 Msa0431550:intron 45.0%
TAAGGCCAGGGAATTGCAAT+GGG - chr3_2:83581222-83581241 Msa0431550:intron 45.0%
!! AATGGGAGGTGTTGGATTGT+AGG - chr3_2:83581239-83581258 Msa0431550:intron 45.0%
AGAGGGACCTAGATTCTCTA+CGG - chr3_2:83581276-83581295 Msa0431550:intron 45.0%
GACCTAGATTCTCTACGGTT+AGG - chr3_2:83581281-83581300 Msa0431550:intron 45.0%
TCCCTAACCGTAGAGAATCT+AGG + chr3_2:83581286-83581305 None:intergenic 45.0%
GGATTCCCTAGATCAGATAG+TGG + chr3_2:83581434-83581453 None:intergenic 45.0%
CAGAACAAGGAATGCAAGGA+TGG + chr3_2:83581773-83581792 None:intergenic 45.0%
TGTGAAGAAGTAACGTCGGT+AGG + chr3_2:83581886-83581905 None:intergenic 45.0%
CACAGAACAAATGGATGAGG+CGG - chr3_2:83581902-83581921 Msa0431550:CDS 45.0%
GCTCGAAAATTGTGTTGCCT+AGG + chr3_2:83582052-83582071 None:intergenic 45.0%
CTTCGTTTCTGTATCAGTGG+TGG + chr3_2:83579955-83579974 None:intergenic 45.0%
GAGAAAGGGGAATGCTAATG+GGG + chr3_2:83580012-83580031 None:intergenic 45.0%
AGATGGGGGATTTGAGAAAG+GGG + chr3_2:83580025-83580044 None:intergenic 45.0%
GAGATGGGGGATTTGAGAAA+GGG + chr3_2:83580026-83580045 None:intergenic 45.0%
AATGGATGGAGGGGAGAAAT+TGG + chr3_2:83580048-83580067 None:intergenic 45.0%
! ATTATCGACGGCGTTGGAAA+TGG + chr3_2:83580066-83580085 None:intergenic 45.0%
AGCTAAGGAGTGGAGAAGTT+TGG + chr3_2:83580093-83580112 None:intergenic 45.0%
!!! GGTTTTGAGAAGCTAAGGAG+TGG + chr3_2:83580103-83580122 None:intergenic 45.0%
!!! GAAGGGGTTTTGAGAAGCTA+AGG + chr3_2:83580108-83580127 None:intergenic 45.0%
GCACGTGTTATGGAATTGAG+AGG + chr3_2:83580153-83580172 None:intergenic 45.0%
ATTCCATAACACGTGCCTAC+AGG - chr3_2:83580157-83580176 Msa0431550:CDS 45.0%
TAACCTGTAGGCACGTGTTA+TGG + chr3_2:83580163-83580182 None:intergenic 45.0%
TGTAGTTACTGCACCGAATC+TGG + chr3_2:83580267-83580286 None:intergenic 45.0%
!! AGATTCGGTGCAGTAACTAC+AGG - chr3_2:83580266-83580285 Msa0431550:CDS 45.0%
ACTACAGGAACAGTAGTAGG+TGG - chr3_2:83580281-83580300 Msa0431550:CDS 45.0%
CTACAGGAACAGTAGTAGGT+GGG - chr3_2:83580282-83580301 Msa0431550:CDS 45.0%
GGAATCACCAGGTAAAACAG+CGG + chr3_2:83580329-83580348 None:intergenic 45.0%
! TGTTTTACCTGGTGATTCCG+TGG - chr3_2:83580330-83580349 Msa0431550:intron 45.0%
AAACCAGGTAAGAACAAGCC+TGG + chr3_2:83580419-83580438 None:intergenic 45.0%
AGAAATGTGACTGACCTGAG+AGG + chr3_2:83580469-83580488 None:intergenic 45.0%
TGTTGAAATGCAAGGACGTG+GGG - chr3_2:83580631-83580650 Msa0431550:intron 45.0%
!! CAATTCCCTGGCCTTAAGTA+TGG + chr3_2:83581218-83581237 None:intergenic 45.0%
TTAAGGCCAGGGAATTGCAA+TGG - chr3_2:83581221-83581240 Msa0431550:intron 45.0%
TAAGGCCAGGGAATTGCAAT+GGG - chr3_2:83581222-83581241 Msa0431550:intron 45.0%
!! AATGGGAGGTGTTGGATTGT+AGG - chr3_2:83581239-83581258 Msa0431550:intron 45.0%
AGAGGGACCTAGATTCTCTA+CGG - chr3_2:83581276-83581295 Msa0431550:intron 45.0%
GACCTAGATTCTCTACGGTT+AGG - chr3_2:83581281-83581300 Msa0431550:intron 45.0%
TCCCTAACCGTAGAGAATCT+AGG + chr3_2:83581286-83581305 None:intergenic 45.0%
GGATTCCCTAGATCAGATAG+TGG + chr3_2:83581434-83581453 None:intergenic 45.0%
CAGAACAAGGAATGCAAGGA+TGG + chr3_2:83581773-83581792 None:intergenic 45.0%
TGTGAAGAAGTAACGTCGGT+AGG + chr3_2:83581886-83581905 None:intergenic 45.0%
CACAGAACAAATGGATGAGG+CGG - chr3_2:83581902-83581921 Msa0431550:CDS 45.0%
GCTCGAAAATTGTGTTGCCT+AGG + chr3_2:83582052-83582071 None:intergenic 45.0%
CGGAGCTCAGACAGGATAAT+GGG + chr3_2:83579875-83579894 None:intergenic 50.0%
ACGGAGCTCAGACAGGATAA+TGG + chr3_2:83579876-83579895 None:intergenic 50.0%
CGAGTCGCAACCGTTCATAA+CGG + chr3_2:83579928-83579947 None:intergenic 50.0%
GGAGATGGGGGATTTGAGAA+AGG + chr3_2:83580027-83580046 None:intergenic 50.0%
AGGGGAGAAATTGGAGATGG+GGG + chr3_2:83580039-83580058 None:intergenic 50.0%
GAGGGGAGAAATTGGAGATG+GGG + chr3_2:83580040-83580059 None:intergenic 50.0%
GGAGGGGAGAAATTGGAGAT+GGG + chr3_2:83580041-83580060 None:intergenic 50.0%
TGGAGGGGAGAAATTGGAGA+TGG + chr3_2:83580042-83580061 None:intergenic 50.0%
GGAACAATTATCGACGGCGT+TGG + chr3_2:83580072-83580091 None:intergenic 50.0%
! TTGCCAGGCTTGTTCTTACC+TGG - chr3_2:83580413-83580432 Msa0431550:intron 50.0%
CAAGGACGTGGGGTTATTAG+TGG - chr3_2:83580641-83580660 Msa0431550:intron 50.0%
!! GGCAGAGACTGATTTGAGAG+AGG - chr3_2:83580865-83580884 Msa0431550:intron 50.0%
! GGAATTGCAATGGGAGGTGT+TGG - chr3_2:83581231-83581250 Msa0431550:intron 50.0%
!! GGAGGTGTTGGATTGTAGGT+TGG - chr3_2:83581243-83581262 Msa0431550:intron 50.0%
! GGCTCCAATGCATTGACGAT+AGG + chr3_2:83581311-83581330 None:intergenic 50.0%
TGCAGGCCACTATCTGATCT+AGG - chr3_2:83581425-83581444 Msa0431550:intron 50.0%
GCAGGCCACTATCTGATCTA+GGG - chr3_2:83581426-83581445 Msa0431550:intron 50.0%
GAGTAGCTGGATGCAATTGG+TGG - chr3_2:83581473-83581492 Msa0431550:intron 50.0%
AAATGGATGAGGCGGCTTCA+AGG - chr3_2:83581910-83581929 Msa0431550:CDS 50.0%
AATGGATGAGGCGGCTTCAA+GGG - chr3_2:83581911-83581930 Msa0431550:CDS 50.0%
CGGAGCTCAGACAGGATAAT+GGG + chr3_2:83579875-83579894 None:intergenic 50.0%
ACGGAGCTCAGACAGGATAA+TGG + chr3_2:83579876-83579895 None:intergenic 50.0%
CGAGTCGCAACCGTTCATAA+CGG + chr3_2:83579928-83579947 None:intergenic 50.0%
GGAGATGGGGGATTTGAGAA+AGG + chr3_2:83580027-83580046 None:intergenic 50.0%
AGGGGAGAAATTGGAGATGG+GGG + chr3_2:83580039-83580058 None:intergenic 50.0%
GAGGGGAGAAATTGGAGATG+GGG + chr3_2:83580040-83580059 None:intergenic 50.0%
GGAGGGGAGAAATTGGAGAT+GGG + chr3_2:83580041-83580060 None:intergenic 50.0%
TGGAGGGGAGAAATTGGAGA+TGG + chr3_2:83580042-83580061 None:intergenic 50.0%
GGAACAATTATCGACGGCGT+TGG + chr3_2:83580072-83580091 None:intergenic 50.0%
! TTGCCAGGCTTGTTCTTACC+TGG - chr3_2:83580413-83580432 Msa0431550:intron 50.0%
CAAGGACGTGGGGTTATTAG+TGG - chr3_2:83580641-83580660 Msa0431550:intron 50.0%
!! GGCAGAGACTGATTTGAGAG+AGG - chr3_2:83580865-83580884 Msa0431550:intron 50.0%
! GGAATTGCAATGGGAGGTGT+TGG - chr3_2:83581231-83581250 Msa0431550:intron 50.0%
!! GGAGGTGTTGGATTGTAGGT+TGG - chr3_2:83581243-83581262 Msa0431550:intron 50.0%
! GGCTCCAATGCATTGACGAT+AGG + chr3_2:83581311-83581330 None:intergenic 50.0%
TGCAGGCCACTATCTGATCT+AGG - chr3_2:83581425-83581444 Msa0431550:intron 50.0%
GCAGGCCACTATCTGATCTA+GGG - chr3_2:83581426-83581445 Msa0431550:intron 50.0%
GAGTAGCTGGATGCAATTGG+TGG - chr3_2:83581473-83581492 Msa0431550:intron 50.0%
AAATGGATGAGGCGGCTTCA+AGG - chr3_2:83581910-83581929 Msa0431550:CDS 50.0%
AATGGATGAGGCGGCTTCAA+GGG - chr3_2:83581911-83581930 Msa0431550:CDS 50.0%
GAACTCTACGGAGCTCAGAC+AGG + chr3_2:83579883-83579902 None:intergenic 55.0%
! GGCGTTGGAAATGGATGGAG+GGG + chr3_2:83580057-83580076 None:intergenic 55.0%
! CGGCGTTGGAAATGGATGGA+GGG + chr3_2:83580058-83580077 None:intergenic 55.0%
! ACGGCGTTGGAAATGGATGG+AGG + chr3_2:83580059-83580078 None:intergenic 55.0%
! TCGACGGCGTTGGAAATGGA+TGG + chr3_2:83580062-83580081 None:intergenic 55.0%
TTACCTGGTGATTCCGTGGC+TGG - chr3_2:83580334-83580353 Msa0431550:intron 55.0%
!! TGATTCCGTGGCTGGCTTAG+TGG - chr3_2:83580342-83580361 Msa0431550:intron 55.0%
! GCTGGCTTAGTGGTGGCTAA+TGG - chr3_2:83580352-83580371 Msa0431550:intron 55.0%
ACAACACCTTGCTCGTTGCC+AGG - chr3_2:83580398-83580417 Msa0431550:intron 55.0%
AACAAGCCTGGCAACGAGCA+AGG + chr3_2:83580407-83580426 None:intergenic 55.0%
!! AGGAGGAGCGTTAGGAAACC+AGG + chr3_2:83580434-83580453 None:intergenic 55.0%
TGACCTGAGAGGAGCAACGA+TGG + chr3_2:83580458-83580477 None:intergenic 55.0%
CACCTCCCATTGCAATTCCC+TGG + chr3_2:83581230-83581249 None:intergenic 55.0%
AGAGATCCAGTCCACCGAGA+GGG + chr3_2:83581747-83581766 None:intergenic 55.0%
TGCAGCAGCAGTGCTAGTGA+AGG + chr3_2:83581800-83581819 None:intergenic 55.0%
CTGTGACTGGAAGCTCAGCA+GGG + chr3_2:83581825-83581844 None:intergenic 55.0%
TCTGTGACTGGAAGCTCAGC+AGG + chr3_2:83581826-83581845 None:intergenic 55.0%
ATGAGGCGGCTTCAAGGGAT+CGG - chr3_2:83581916-83581935 Msa0431550:CDS 55.0%
GAACTCTACGGAGCTCAGAC+AGG + chr3_2:83579883-83579902 None:intergenic 55.0%
! GGCGTTGGAAATGGATGGAG+GGG + chr3_2:83580057-83580076 None:intergenic 55.0%
! CGGCGTTGGAAATGGATGGA+GGG + chr3_2:83580058-83580077 None:intergenic 55.0%
! ACGGCGTTGGAAATGGATGG+AGG + chr3_2:83580059-83580078 None:intergenic 55.0%
! TCGACGGCGTTGGAAATGGA+TGG + chr3_2:83580062-83580081 None:intergenic 55.0%
TTACCTGGTGATTCCGTGGC+TGG - chr3_2:83580334-83580353 Msa0431550:intron 55.0%
!! TGATTCCGTGGCTGGCTTAG+TGG - chr3_2:83580342-83580361 Msa0431550:intron 55.0%
! GCTGGCTTAGTGGTGGCTAA+TGG - chr3_2:83580352-83580371 Msa0431550:intron 55.0%
ACAACACCTTGCTCGTTGCC+AGG - chr3_2:83580398-83580417 Msa0431550:intron 55.0%
AACAAGCCTGGCAACGAGCA+AGG + chr3_2:83580407-83580426 None:intergenic 55.0%
!! AGGAGGAGCGTTAGGAAACC+AGG + chr3_2:83580434-83580453 None:intergenic 55.0%
TGACCTGAGAGGAGCAACGA+TGG + chr3_2:83580458-83580477 None:intergenic 55.0%
CACCTCCCATTGCAATTCCC+TGG + chr3_2:83581230-83581249 None:intergenic 55.0%
AGAGATCCAGTCCACCGAGA+GGG + chr3_2:83581747-83581766 None:intergenic 55.0%
TGCAGCAGCAGTGCTAGTGA+AGG + chr3_2:83581800-83581819 None:intergenic 55.0%
CTGTGACTGGAAGCTCAGCA+GGG + chr3_2:83581825-83581844 None:intergenic 55.0%
TCTGTGACTGGAAGCTCAGC+AGG + chr3_2:83581826-83581845 None:intergenic 55.0%
ATGAGGCGGCTTCAAGGGAT+CGG - chr3_2:83581916-83581935 Msa0431550:CDS 55.0%
AAGCCAGCCACGGAATCACC+AGG + chr3_2:83580340-83580359 None:intergenic 60.0%
!! TTCCGTGGCTGGCTTAGTGG+TGG - chr3_2:83580345-83580364 Msa0431550:intron 60.0%
AGCCACCACTAAGCCAGCCA+CGG + chr3_2:83580350-83580369 None:intergenic 60.0%
!! ACGATGGCAGGAGGAGCGTT+AGG + chr3_2:83580442-83580461 None:intergenic 60.0%
AGAGGAGCAACGATGGCAGG+AGG + chr3_2:83580451-83580470 None:intergenic 60.0%
CTGAGAGGAGCAACGATGGC+AGG + chr3_2:83580454-83580473 None:intergenic 60.0%
CTGCCATCGTTGCTCCTCTC+AGG - chr3_2:83580452-83580471 Msa0431550:intron 60.0%
GGCCAGGGAATTGCAATGGG+AGG - chr3_2:83581225-83581244 Msa0431550:intron 60.0%
AGATCCAGTCCACCGAGAGG+GGG + chr3_2:83581745-83581764 None:intergenic 60.0%
GAGATCCAGTCCACCGAGAG+GGG + chr3_2:83581746-83581765 None:intergenic 60.0%
GAGAGATCCAGTCCACCGAG+AGG + chr3_2:83581748-83581767 None:intergenic 60.0%
TGAGGCGGCTTCAAGGGATC+GGG - chr3_2:83581917-83581936 Msa0431550:CDS 60.0%
AAGCCAGCCACGGAATCACC+AGG + chr3_2:83580340-83580359 None:intergenic 60.0%
!! TTCCGTGGCTGGCTTAGTGG+TGG - chr3_2:83580345-83580364 Msa0431550:intron 60.0%
AGCCACCACTAAGCCAGCCA+CGG + chr3_2:83580350-83580369 None:intergenic 60.0%
!! ACGATGGCAGGAGGAGCGTT+AGG + chr3_2:83580442-83580461 None:intergenic 60.0%
AGAGGAGCAACGATGGCAGG+AGG + chr3_2:83580451-83580470 None:intergenic 60.0%
CTGAGAGGAGCAACGATGGC+AGG + chr3_2:83580454-83580473 None:intergenic 60.0%
CTGCCATCGTTGCTCCTCTC+AGG - chr3_2:83580452-83580471 Msa0431550:intron 60.0%
GGCCAGGGAATTGCAATGGG+AGG - chr3_2:83581225-83581244 Msa0431550:intron 60.0%
AGATCCAGTCCACCGAGAGG+GGG + chr3_2:83581745-83581764 None:intergenic 60.0%
GAGATCCAGTCCACCGAGAG+GGG + chr3_2:83581746-83581765 None:intergenic 60.0%
GAGAGATCCAGTCCACCGAG+AGG + chr3_2:83581748-83581767 None:intergenic 60.0%
TGAGGCGGCTTCAAGGGATC+GGG - chr3_2:83581917-83581936 Msa0431550:CDS 60.0%
CGAGAGGGGGGATAAGCCCA+CGG + chr3_2:83581732-83581751 None:intergenic 65.0%
CGTGGGCTTATCCCCCCTCT+CGG - chr3_2:83581730-83581749 Msa0431550:intron 65.0%
TATCCCCCCTCTCGGTGGAC+TGG - chr3_2:83581738-83581757 Msa0431550:intron 65.0%
GATCCAGTCCACCGAGAGGG+GGG + chr3_2:83581744-83581763 None:intergenic 65.0%
CGAGAGGGGGGATAAGCCCA+CGG + chr3_2:83581732-83581751 None:intergenic 65.0%
CGTGGGCTTATCCCCCCTCT+CGG - chr3_2:83581730-83581749 Msa0431550:intron 65.0%
TATCCCCCCTCTCGGTGGAC+TGG - chr3_2:83581738-83581757 Msa0431550:intron 65.0%
GATCCAGTCCACCGAGAGGG+GGG + chr3_2:83581744-83581763 None:intergenic 65.0%
GGGCTTATCCCCCCTCTCGG+TGG - chr3_2:83581733-83581752 Msa0431550:intron 70.0%
GGGCTTATCCCCCCTCTCGG+TGG - chr3_2:83581733-83581752 Msa0431550:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 83579791 83582214 83579791 ID=Msa0431550;Name=Msa0431550
chr3_2 mRNA 83579791 83582214 83579791 ID=Msa0431550-mRNA-1;Parent=Msa0431550;Name=Msa0431550-mRNA-1;_AED=0.16;_eAED=0.16;_QI=130|1|1|1|1|1|3|248|243
chr3_2 exon 83579791 83580306 83579791 ID=Msa0431550-mRNA-1:exon:23411;Parent=Msa0431550-mRNA-1
chr3_2 exon 83581532 83581737 83581532 ID=Msa0431550-mRNA-1:exon:23410;Parent=Msa0431550-mRNA-1
chr3_2 exon 83581827 83582214 83581827 ID=Msa0431550-mRNA-1:exon:23409;Parent=Msa0431550-mRNA-1
chr3_2 five_prime_UTR 83582085 83582214 83582085 ID=Msa0431550-mRNA-1:five_prime_utr;Parent=Msa0431550-mRNA-1
chr3_2 CDS 83581827 83582084 83581827 ID=Msa0431550-mRNA-1:cds;Parent=Msa0431550-mRNA-1
chr3_2 CDS 83581532 83581737 83581532 ID=Msa0431550-mRNA-1:cds;Parent=Msa0431550-mRNA-1
chr3_2 CDS 83580039 83580306 83580039 ID=Msa0431550-mRNA-1:cds;Parent=Msa0431550-mRNA-1
chr3_2 three_prime_UTR 83579791 83580038 83579791 ID=Msa0431550-mRNA-1:three_prime_utr;Parent=Msa0431550-mRNA-1
Gene Sequence

>Msa0431550

ATGGCCGTTATGAACGGTTGCGACTCGTCGTCCACCACTGATACAGAAACGAAGAAGAACGTCTCGTTTTGTTGGGGTAATTCTCAATCCCCATTAGCATTCCCCTTTCTCAAATCCCCCATCTCCAATTTCTCCCCTCCATCCATTTCCAACGCCGTCGATAATTGTTCCAAACTTCTCCACTCCTTAGCTTCTCAAAACCCCTTCTTAAACAAACTACTCTCTCTTTCCTCTCAATTCCATAACACGTGCCTACAGATTCGGTGCAGTAACTACAGGAACAGTAGTAGGTGGGTGAGTAATCATCACAATTTTGCCGCTGTTTTACCTGGTGATTCCGTGGCTGGCTTAGTGGTGGCTAATGGACTTAATAATTTCTTGAGTCTTTACAACACCTTGCTCGTTGCCAGGCTTGTTCTTACCTGGTTTCCTAACGCTCCTCCTGCCATCGTTGCTCCTCTCAGCACCGTATGTGACCCGTATTTGAATGTATTCCGTGGGCTTATCCCCCCTCTCGGTGGACTGGATCTCTCTCCCATCCTTGCATTCCTTGTTCTGAATGCCTTCACTAGCACTGCTGCTGCACTCCCTGCTGAGCTTCCAGTCACAGAACAATCTAAGCAAGGTCTTGAAGCAAGATTACAACAACCTACCGACGTTACTTCTTCACAGAACAAATGGATGAGGCGGCTTCAAGGGATCGGGTCAAAGACCTCCACTTCTGCAAATTAG

Protein sequence

>Msa0431550

MAVMNGCDSSSTTDTETKKNVSFCWGNSQSPLAFPFLKSPISNFSPPSISNAVDNCSKLLHSLASQNPFLNKLLSLSSQFHNTCLQIRCSNYRNSSRWVSNHHNFAAVLPGDSVAGLVVANGLNNFLSLYNTLLVARLVLTWFPNAPPAIVAPLSTVCDPYLNVFRGLIPPLGGLDLSPILAFLVLNAFTSTAAALPAELPVTEQSKQGLEARLQQPTDVTSSQNKWMRRLQGIGSKTSTSAN*