Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa0702440 | 0.830206 | 3.347111e-55 | -8.615850e-47 |
| Msa0069330 | Msa0702440 | 0.817500 | 3.192708e-52 | -8.615850e-47 |
| Msa0104550 | Msa0702440 | 0.813846 | 2.081665e-51 | -8.615850e-47 |
| Msa0643890 | Msa0702440 | 0.802085 | 6.632138e-49 | -8.615850e-47 |
| Msa0683730 | Msa0702440 | 0.801178 | 1.017853e-48 | -8.615850e-47 |
| Msa0702440 | Msa0702470 | 0.926065 | 7.811980e-91 | -8.615850e-47 |
| Msa0702440 | Msa1374040 | 0.800067 | 1.715123e-48 | -8.615850e-47 |
| Msa0702440 | Msa1382540 | 0.824007 | 1.019074e-53 | -8.615850e-47 |
| Msa0150570 | Msa0702440 | 0.801307 | 9.577275e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGTTGTTGTTTGGGTTGT+TGG | 0.206196 | 4_4:-74077926 | Msa0702440:CDS |
| CGCGGCTGGTGGTTGTTGTT+TGG | 0.226310 | 4_4:-74077934 | Msa0702440:CDS |
| GGCACTTGGTGGTTCAGTTT+TGG | 0.271381 | 4_4:-74078022 | Msa0702440:CDS |
| TCTGAACTTGGCTGCTTCTC+TGG | 0.282117 | 4_4:-74078197 | Msa0702440:CDS |
| TTGGGTTGTGGATCCAGTTT+TGG | 0.329080 | 4_4:-74078103 | Msa0702440:CDS |
| GCGGCTGGTGGTTGTTGTTT+GGG | 0.345102 | 4_4:-74077933 | Msa0702440:CDS |
| GTCATCACCAAACCCCTTCC+AGG | 0.351873 | 4_4:-74078231 | Msa0702440:CDS |
| GTGGGTTTGCGACCCATGTT+TGG | 0.352625 | 4_4:-74078122 | Msa0702440:CDS |
| TTCGGATCTGTCCGGACTCT+TGG | 0.357000 | 4_4:-74078151 | Msa0702440:CDS |
| AGAAAACCCTGGAAGGGGTT+TGG | 0.403011 | 4_4:+74078224 | None:intergenic |
| GTAAACTCAAGATCCAAAAC+TGG | 0.420910 | 4_4:+74078090 | None:intergenic |
| CTCTTCTTCGTCGGTGAGGG+AGG | 0.430698 | 4_4:-74078051 | Msa0702440:CDS |
| CTGTCCGGACTCTTGGTTTG+TGG | 0.435938 | 4_4:-74078144 | Msa0702440:CDS |
| CCGCCGCCGTTGGTGGTGTT+CGG | 0.437829 | 4_4:-74078169 | Msa0702440:CDS |
| TGCGACCCATGTTTGGGTTG+TGG | 0.438665 | 4_4:-74078115 | Msa0702440:CDS |
| CACCTCTTCTTCGTCGGTGA+GGG | 0.441642 | 4_4:-74078054 | Msa0702440:CDS |
| CGCCTACTGTTTGGTGTTGG+TGG | 0.444694 | 4_4:-74077966 | Msa0702440:CDS |
| CGTCGGTGAGGGAGGGTGGT+TGG | 0.445111 | 4_4:-74078043 | Msa0702440:CDS |
| GGAGGGTGGTTGGCACTTGG+TGG | 0.456364 | 4_4:-74078033 | Msa0702440:CDS |
| CAGTGGTTCGTCGTCGGCGC+TGG | 0.457337 | 4_4:-74077886 | Msa0702440:CDS |
| TGTTGTTCGTGATCAAAGAT+TGG | 0.462849 | 4_4:-74077844 | Msa0702440:CDS |
| GAGGGAGGGTGGTTGGCACT+TGG | 0.465408 | 4_4:-74078036 | Msa0702440:CDS |
| TCCGGACTCTTGGTTTGTGG+TGG | 0.465413 | 4_4:-74078141 | Msa0702440:CDS |
| GTTGTTGTTTGGGTTGTTGG+TGG | 0.466360 | 4_4:-74077923 | Msa0702440:CDS |
| CCGGACTCTTGGTTTGTGGT+GGG | 0.466578 | 4_4:-74078140 | Msa0702440:CDS |
| GGTGGAGCAACTGCCGCGGC+TGG | 0.468308 | 4_4:-74077948 | Msa0702440:CDS |
| GGTCTCGCCGCCGCCGTTGG+TGG | 0.470754 | 4_4:-74078176 | Msa0702440:CDS |
| TCTGGTCTCGCCGCCGCCGT+TGG | 0.480533 | 4_4:-74078179 | Msa0702440:CDS |
| TGGGTTTGCGACCCATGTTT+GGG | 0.487442 | 4_4:-74078121 | Msa0702440:CDS |
| AGAAGCAGCCAAGTTCAGAT+TGG | 0.492369 | 4_4:+74078201 | None:intergenic |
| GGGTTTGTGCGCCTACTGTT+TGG | 0.492673 | 4_4:-74077975 | Msa0702440:CDS |
| CCCACCACAAACCAAGAGTC+CGG | 0.515983 | 4_4:+74078140 | None:intergenic |
| CTGGATCCACAACCCAAACA+TGG | 0.517117 | 4_4:+74078109 | None:intergenic |
| CAAACAACAACCACCAGCCG+CGG | 0.525074 | 4_4:+74077935 | None:intergenic |
| CCGAACACCACCAACGGCGG+CGG | 0.526351 | 4_4:+74078169 | None:intergenic |
| GTGCGCCTACTGTTTGGTGT+TGG | 0.529177 | 4_4:-74077969 | Msa0702440:CDS |
| CTCCCTCACCGACGAAGAAG+AGG | 0.531471 | 4_4:+74078052 | None:intergenic |
| TTTGTGCACCTCTTCTTCGT+CGG | 0.537547 | 4_4:-74078060 | Msa0702440:CDS |
| GATTGGAGAAAACCCTGGAA+GGG | 0.539411 | 4_4:+74078218 | None:intergenic |
| TCTTCTTCGTCGGTGAGGGA+GGG | 0.540340 | 4_4:-74078050 | Msa0702440:CDS |
| TCTTCGTCGGTGAGGGAGGG+TGG | 0.542017 | 4_4:-74078047 | Msa0702440:CDS |
| GTTGTTCGTGATCAAAGATT+GGG | 0.543436 | 4_4:-74077843 | Msa0702440:CDS |
| ATTGGAGAAAACCCTGGAAG+GGG | 0.547109 | 4_4:+74078219 | None:intergenic |
| TGGTGGTGTTCGGATCTGTC+CGG | 0.558043 | 4_4:-74078159 | Msa0702440:CDS |
| GGAGCAACTGCCGCGGCTGG+TGG | 0.559416 | 4_4:-74077945 | Msa0702440:CDS |
| GCACCTCTTCTTCGTCGGTG+AGG | 0.566165 | 4_4:-74078055 | Msa0702440:CDS |
| CAGCGCCGACGACGAACCAC+TGG | 0.566575 | 4_4:+74077887 | None:intergenic |
| ACAGATCCGAACACCACCAA+CGG | 0.569454 | 4_4:+74078163 | None:intergenic |
| TCATCACCAAACCCCTTCCA+GGG | 0.570445 | 4_4:-74078230 | Msa0702440:CDS |
| TGTTATGCAACAAATGGCAA+TGG | 0.572039 | 4_4:-74081783 | None:intergenic |
| TGTTACCAGTGGTTCGTCGT+CGG | 0.577873 | 4_4:-74077892 | Msa0702440:CDS |
| AGATTGGAGAAAACCCTGGA+AGG | 0.580272 | 4_4:+74078217 | None:intergenic |
| TGGTGTTGCTGTGTTACCAG+TGG | 0.627914 | 4_4:-74077903 | Msa0702440:CDS |
| GTTCGTGATCAAAGATTGGG+TGG | 0.638453 | 4_4:-74077840 | Msa0702440:CDS |
| TGGATCCACAACCCAAACAT+GGG | 0.643461 | 4_4:+74078110 | None:intergenic |
| GTTCAGATTGGAGAAAACCC+TGG | 0.651450 | 4_4:+74078213 | None:intergenic |
| GATCCGAACACCACCAACGG+CGG | 0.654668 | 4_4:+74078166 | None:intergenic |
| CTCCACCAACACCAAACAGT+AGG | 0.659959 | 4_4:+74077964 | None:intergenic |
| TGTTGGTGGAGCAACTGCCG+CGG | 0.660907 | 4_4:-74077952 | Msa0702440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTAAATATTTAAA+TGG | + | chr4_4:74079220-74079239 | None:intergenic | 0.0% |
| !!! | TTAAATATTTAATTTTTTTT+TGG | - | chr4_4:74079221-74079240 | Msa0702440:intron | 0.0% |
| !!! | TGAGTAATTTTTATTTTTTA+AGG | - | chr4_4:74078212-74078231 | Msa0702440:CDS | 10.0% |
| !!! | ACGTTTTTATTTAAATTTTT+AGG | - | chr4_4:74078712-74078731 | Msa0702440:intron | 10.0% |
| !! | ATATATATAAAGAAATGTAA+GGG | + | chr4_4:74079395-74079414 | None:intergenic | 10.0% |
| !! | AATATATATAAAGAAATGTA+AGG | + | chr4_4:74079396-74079415 | None:intergenic | 10.0% |
| !!! | TTTTGAATATCTAATGTTTT+GGG | + | chr4_4:74079163-74079182 | None:intergenic | 15.0% |
| !!! | TTTTGAATATCTAATGTTTT+GGG | + | chr4_4:74079163-74079182 | None:intergenic | 15.0% |
| !!! | TTATTATTTTTTTCGTTGAA+AGG | - | chr4_4:74079499-74079518 | Msa0702440:intron | 15.0% |
| !!! | AGTATAAAAATTTACTTTTG+CGG | + | chr4_4:74080222-74080241 | None:intergenic | 15.0% |
| !! | TGCATTAATATATTTCTTAT+TGG | - | chr4_4:74080270-74080289 | Msa0702440:intron | 15.0% |
| !!! | TTATCAAACCTATTATTTTA+TGG | - | chr4_4:74080414-74080433 | Msa0702440:intron | 15.0% |
| !!! | ATTTTTTTATCTCTACTTTT+TGG | + | chr4_4:74080772-74080791 | None:intergenic | 15.0% |
| !! | AACTCAAATGATTAAATTTA+AGG | + | chr4_4:74080795-74080814 | None:intergenic | 15.0% |
| !!! | AAATTTTTAAGTATGAAAGA+TGG | - | chr4_4:74080901-74080920 | Msa0702440:intron | 15.0% |
| !!! | ACCTTTTCTTCTATAAAAAA+GGG | + | chr4_4:74078069-74078088 | None:intergenic | 20.0% |
| !!! | AACCTTTTCTTCTATAAAAA+AGG | + | chr4_4:74078070-74078089 | None:intergenic | 20.0% |
| !!! | ATAATTTTGGAGTTTTTTGT+CGG | - | chr4_4:74078449-74078468 | Msa0702440:intron | 20.0% |
| !! | TGTAGTATACTTTCTTAATT+AGG | + | chr4_4:74078578-74078597 | None:intergenic | 20.0% |
| !!! | ATTAAGAAAGTATACTACAT+AGG | - | chr4_4:74078579-74078598 | Msa0702440:intron | 20.0% |
| !!! | AATTGCTAATTTTTTGCTTT+TGG | - | chr4_4:74078822-74078841 | Msa0702440:intron | 20.0% |
| !! | TTAAGTCTTTCATACTATTA+AGG | - | chr4_4:74078906-74078925 | Msa0702440:intron | 20.0% |
| !! | GGACTAAAATGAATATTATA+AGG | - | chr4_4:74079025-74079044 | Msa0702440:intron | 20.0% |
| !! | AAAATCCATTTGTACAAAAT+TGG | + | chr4_4:74079052-74079071 | None:intergenic | 20.0% |
| !!! | CTTTTGAATATCTAATGTTT+TGG | + | chr4_4:74079164-74079183 | None:intergenic | 20.0% |
| !!! | CTTTTGAATATCTAATGTTT+TGG | + | chr4_4:74079164-74079183 | None:intergenic | 20.0% |
| !! | AAGTAGAAAAAAAACTACAA+TGG | - | chr4_4:74079530-74079549 | Msa0702440:intron | 20.0% |
| !! | AGTAGAAAAAAAACTACAAT+GGG | - | chr4_4:74079531-74079550 | Msa0702440:intron | 20.0% |
| !!! | CAAAAATATTCGGTTTTTTA+CGG | + | chr4_4:74080111-74080130 | None:intergenic | 20.0% |
| !! | AAAAATTACATATTGCACTT+TGG | - | chr4_4:74080464-74080483 | Msa0702440:intron | 20.0% |
| !!! | AATTCGTGAACATTTTATTT+TGG | - | chr4_4:74080858-74080877 | Msa0702440:intron | 20.0% |
| !! | TAAATAACACAACCAATTTA+AGG | + | chr4_4:74080985-74081004 | None:intergenic | 20.0% |
| !!! | TTTTTTCAACATAACATTGA+CGG | - | chr4_4:74081052-74081071 | Msa0702440:intron | 20.0% |
| !!! | TTAGATTAGTTTATTCAGTT+TGG | + | chr4_4:74081178-74081197 | None:intergenic | 20.0% |
| !!! | ACCCTTTTTTATAGAAGAAA+AGG | - | chr4_4:74078065-74078084 | Msa0702440:CDS | 25.0% |
| ! | TCTAGTACTCATATTTCAAA+AGG | + | chr4_4:74078093-74078112 | None:intergenic | 25.0% |
| !!! | TTTTGAAATATGAGTACTAG+AGG | - | chr4_4:74078092-74078111 | Msa0702440:CDS | 25.0% |
| ! | TACTAGAGGTTAAATTTCAT+CGG | - | chr4_4:74078106-74078125 | Msa0702440:CDS | 25.0% |
| ! | TTGACAAGAGTTATTCATAA+AGG | - | chr4_4:74078308-74078327 | Msa0702440:intron | 25.0% |
| !!! | GGCATTTGACTTAATAATTT+TGG | - | chr4_4:74078436-74078455 | Msa0702440:intron | 25.0% |
| !! | TTTTGTGAGTTCAACTTTTT+AGG | - | chr4_4:74078656-74078675 | Msa0702440:intron | 25.0% |
| ! | AAAAACGTTTGATATGTACA+AGG | + | chr4_4:74078700-74078719 | None:intergenic | 25.0% |
| !!! | TTCATTTTAGTCCTTTTTTG+TGG | + | chr4_4:74079018-74079037 | None:intergenic | 25.0% |
| !!! | TTTGTACAAATGGATTTTAC+AGG | - | chr4_4:74079054-74079073 | Msa0702440:intron | 25.0% |
| !!! | TTGTACAAATGGATTTTACA+GGG | - | chr4_4:74079055-74079074 | Msa0702440:intron | 25.0% |
| ! | CAAAAGATTATACATTTGCA+AGG | - | chr4_4:74079105-74079124 | Msa0702440:intron | 25.0% |
| ! | CAAAAGATTATACATTTGCA+AGG | - | chr4_4:74079105-74079124 | Msa0702440:intron | 25.0% |
| !!! | TATTTTTTTCGTTGAAAGGT+AGG | - | chr4_4:74079503-74079522 | Msa0702440:intron | 25.0% |
| !!! | ATTTTTTTCGTTGAAAGGTA+GGG | - | chr4_4:74079504-74079523 | Msa0702440:intron | 25.0% |
| !!! | AATCGTGTGTTATTTCTTAT+TGG | - | chr4_4:74079707-74079726 | Msa0702440:intron | 25.0% |
| !! | TTTCAAATAACTCTCTAAAG+CGG | + | chr4_4:74079766-74079785 | None:intergenic | 25.0% |
| ! | TATTACATGACACTTCAATT+AGG | - | chr4_4:74079906-74079925 | Msa0702440:intron | 25.0% |
| ! | ATTACATGACACTTCAATTA+GGG | - | chr4_4:74079907-74079926 | Msa0702440:intron | 25.0% |
| !! | CGTAAAAAACCGAATATTTT+TGG | - | chr4_4:74080109-74080128 | Msa0702440:intron | 25.0% |
| ! | CAAACACATCCAAAAATATT+CGG | + | chr4_4:74080121-74080140 | None:intergenic | 25.0% |
| !!! | AAAAATTTACTTTTGCGGTT+CGG | + | chr4_4:74080217-74080236 | None:intergenic | 25.0% |
| ! | CTCATACACCATAAAATAAT+AGG | + | chr4_4:74080425-74080444 | None:intergenic | 25.0% |
| ! | CAAATATATGCGGTTTAATT+TGG | + | chr4_4:74080506-74080525 | None:intergenic | 25.0% |
| ! | CAAATTAAACCGCATATATT+TGG | - | chr4_4:74080504-74080523 | Msa0702440:intron | 25.0% |
| !! | ACATGATTTTTACTTTGGAT+CGG | - | chr4_4:74080580-74080599 | Msa0702440:intron | 25.0% |
| !!! | AGTTTCATGATTTTAGTCTT+AGG | - | chr4_4:74080811-74080830 | Msa0702440:intron | 25.0% |
| !! | GTTTCTAATAGTTTGTCAAT+TGG | - | chr4_4:74080833-74080852 | Msa0702440:intron | 25.0% |
| !!! | TTTTATTTTGGTTTTCGTGT+TGG | - | chr4_4:74080870-74080889 | Msa0702440:intron | 25.0% |
| ! | GACTTATTAGTAACATAGTT+TGG | - | chr4_4:74080956-74080975 | Msa0702440:intron | 25.0% |
| ! | ATTGAGTCTTTAGATTCATT+AGG | + | chr4_4:74081112-74081131 | None:intergenic | 25.0% |
| !! | TTCATATATTTTTCCAAGCT+CGG | - | chr4_4:74081150-74081169 | Msa0702440:intron | 25.0% |
| !!! | TGCTTTTGTTTTTGAGTTAT+GGG | - | chr4_4:74081611-74081630 | Msa0702440:intron | 25.0% |
| ACTTTCGAATCTGTATGATA+TGG | + | chr4_4:74078043-74078062 | None:intergenic | 30.0% | |
| ACAAGAGTTATTCATAAAGG+AGG | - | chr4_4:74078311-74078330 | Msa0702440:intron | 30.0% | |
| CAAGAGTTATTCATAAAGGA+GGG | - | chr4_4:74078312-74078331 | Msa0702440:intron | 30.0% | |
| AAGAGTTATTCATAAAGGAG+GGG | - | chr4_4:74078313-74078332 | Msa0702440:intron | 30.0% | |
| ! | TAGGTTTCAAATCTCGATTT+TGG | - | chr4_4:74078415-74078434 | Msa0702440:intron | 30.0% |
| GTCGGTTGAATTAAGAATTA+TGG | - | chr4_4:74078467-74078486 | Msa0702440:intron | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr4_4:74078970-74078989 | Msa0702440:intron | 30.0% | |
| !! | ATTTTAGTCCTTTTTTGTGG+TGG | + | chr4_4:74079015-74079034 | None:intergenic | 30.0% |
| ! | AAGGACCAATTTTGTACAAA+TGG | - | chr4_4:74079044-74079063 | Msa0702440:intron | 30.0% |
| GGGATTAAAACAAAATGTCA+AGG | - | chr4_4:74079075-74079094 | Msa0702440:intron | 30.0% | |
| !! | GGTTGTTTTATGAGTTTTGT+CGG | + | chr4_4:74079557-74079576 | None:intergenic | 30.0% |
| !! | TCGTTATTTTCACGAAACTA+TGG | + | chr4_4:74079578-74079597 | None:intergenic | 30.0% |
| CAACTAAATTGCTTATTGTG+AGG | + | chr4_4:74079833-74079852 | None:intergenic | 30.0% | |
| CTCACAATAAGCAATTTAGT+TGG | - | chr4_4:74079831-74079850 | Msa0702440:intron | 30.0% | |
| CTTTACAATCATTGCATAGA+TGG | + | chr4_4:74079875-74079894 | None:intergenic | 30.0% | |
| CATCTATGCAATGATTGTAA+AGG | - | chr4_4:74079873-74079892 | Msa0702440:intron | 30.0% | |
| TTTAGTCTCTCTTCTATGTA+AGG | - | chr4_4:74079965-74079984 | Msa0702440:intron | 30.0% | |
| TTAGTCTCTCTTCTATGTAA+GGG | - | chr4_4:74079966-74079985 | Msa0702440:intron | 30.0% | |
| ! | TTTACGGTTTTCGGTTTTTT+TGG | + | chr4_4:74080095-74080114 | None:intergenic | 30.0% |
| !!! | ATTCGGTTTTTTACGGTTTT+CGG | + | chr4_4:74080104-74080123 | None:intergenic | 30.0% |
| !!! | CGAATATTTTTGGATGTGTT+TGG | - | chr4_4:74080119-74080138 | Msa0702440:intron | 30.0% |
| !!! | GTTTAATTTGGATCGGTTTT+TGG | + | chr4_4:74080494-74080513 | None:intergenic | 30.0% |
| !! | ATATGCGGTTTAATTTGGAT+CGG | + | chr4_4:74080501-74080520 | None:intergenic | 30.0% |
| TAAACCGCATATATTTGGAT+CGG | - | chr4_4:74080509-74080528 | Msa0702440:intron | 30.0% | |
| TCCAAAGTAAAAATCATGTG+CGG | + | chr4_4:74080579-74080598 | None:intergenic | 30.0% | |
| AAAAGAAGAGTTTATTGACC+TGG | + | chr4_4:74080703-74080722 | None:intergenic | 30.0% | |
| ATGAAAGATGGATGTTTGAA+TGG | - | chr4_4:74080913-74080932 | Msa0702440:intron | 30.0% | |
| !! | ATAGTTTGGTGTCCTTAAAT+TGG | - | chr4_4:74080970-74080989 | Msa0702440:intron | 30.0% |
| ! | TCATATATTTTTCCAAGCTC+GGG | - | chr4_4:74081151-74081170 | Msa0702440:intron | 30.0% |
| !!! | GTGCTTTTGTTTTTGAGTTA+TGG | - | chr4_4:74081610-74081629 | Msa0702440:intron | 30.0% |
| !!! | TTCCAATGTTGCTTTTGACA+TGG | - | chr4_4:74077875-74077894 | Msa0702440:CDS | 35.0% |
| ! | GCTTCATTGGTGATTCATAT+TGG | - | chr4_4:74077901-74077920 | Msa0702440:CDS | 35.0% |
| TCGAATCTGTATGATATGGT+TGG | + | chr4_4:74078039-74078058 | None:intergenic | 35.0% | |
| AGAGTTATTCATAAAGGAGG+GGG | - | chr4_4:74078314-74078333 | Msa0702440:intron | 35.0% | |
| CATAGACAAGTAGAGAAGTT+AGG | - | chr4_4:74078396-74078415 | Msa0702440:intron | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr4_4:74078975-74078994 | Msa0702440:intron | 35.0% | |
| TAGGGATAATACGATGAGTT+AGG | - | chr4_4:74079925-74079944 | Msa0702440:intron | 35.0% | |
| ATTCGCCACTATTAGTTGAT+AGG | - | chr4_4:74080005-74080024 | Msa0702440:intron | 35.0% | |
| TTGGACCTATCAACTAATAG+TGG | + | chr4_4:74080013-74080032 | None:intergenic | 35.0% | |
| !!! | TTTGCGGTCTTATTTTGGAT+CGG | + | chr4_4:74080067-74080086 | None:intergenic | 35.0% |
| !!! | GGTTTTCGGTTTTTTTGGAT+CGG | + | chr4_4:74080090-74080109 | None:intergenic | 35.0% |
| !! | GATGTGTTTGGATGTTGTTT+TGG | - | chr4_4:74080131-74080150 | Msa0702440:intron | 35.0% |
| TTTGGAAAAACCGCTATGAT+CGG | - | chr4_4:74080149-74080168 | Msa0702440:intron | 35.0% | |
| AGTAAAAATCATGTGCGGTT+CGG | + | chr4_4:74080574-74080593 | None:intergenic | 35.0% | |
| ! | ACCGCACATGATTTTTACTT+TGG | - | chr4_4:74080575-74080594 | Msa0702440:intron | 35.0% |
| !! | CGTTATTTTACTGGGATTAG+GGG | + | chr4_4:74080649-74080668 | None:intergenic | 35.0% |
| !! | GCGTTATTTTACTGGGATTA+GGG | + | chr4_4:74080650-74080669 | None:intergenic | 35.0% |
| CTAATCCCAGTAAAATAACG+CGG | - | chr4_4:74080649-74080668 | Msa0702440:intron | 35.0% | |
| GATTCATTAGGTCATTGCTT+TGG | + | chr4_4:74081100-74081119 | None:intergenic | 35.0% | |
| TAATCTAATCCGACCTCAAT+CGG | - | chr4_4:74081190-74081209 | Msa0702440:intron | 35.0% | |
| AAAAAGTTAGAGAGAGAGAG+TGG | + | chr4_4:74081233-74081252 | None:intergenic | 35.0% | |
| TGTTGGGGTTAAAGGTTATA+CGG | + | chr4_4:74081294-74081313 | None:intergenic | 35.0% | |
| TGTAGAAGGATTTGGATGTT+GGG | + | chr4_4:74081310-74081329 | None:intergenic | 35.0% | |
| GTAAACTCAAGATCCAAAAC+TGG | + | chr4_4:74081519-74081538 | None:intergenic | 35.0% | |
| TGTTGTTCGTGATCAAAGAT+TGG | - | chr4_4:74081762-74081781 | Msa0702440:intron | 35.0% | |
| GTTGTTCGTGATCAAAGATT+GGG | - | chr4_4:74081763-74081782 | Msa0702440:intron | 35.0% | |
| !! | GGCAATGGTATTGGCTTATT+AGG | - | chr4_4:74077838-74077857 | Msa0702440:CDS | 40.0% |
| CACCATGTCAAAAGCAACAT+TGG | + | chr4_4:74077880-74077899 | None:intergenic | 40.0% | |
| TTTGACATGGTGTGCTTCAT+TGG | - | chr4_4:74077888-74077907 | Msa0702440:CDS | 40.0% | |
| TGTGCATATTGCGATTGTAG+TGG | - | chr4_4:74077996-74078015 | Msa0702440:CDS | 40.0% | |
| !! | CTTTAGAATTGTGCGAACGT+GGG | - | chr4_4:74078542-74078561 | Msa0702440:intron | 40.0% |
| GCATAAAATATGCAAGGTCC+GGG | - | chr4_4:74078976-74078995 | Msa0702440:intron | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr4_4:74078977-74078996 | Msa0702440:intron | 40.0% | |
| !!! | TAGTCCTTTTTTGTGGTGGT+CGG | + | chr4_4:74079011-74079030 | None:intergenic | 40.0% |
| CAATGACACGTTTATCACTG+AGG | - | chr4_4:74079245-74079264 | Msa0702440:intron | 40.0% | |
| !!! | GGTCTTATTTTGGATCGGTT+TGG | + | chr4_4:74080062-74080081 | None:intergenic | 40.0% |
| !!! | ATCGGTTTGCGGTCTTATTT+TGG | + | chr4_4:74080072-74080091 | None:intergenic | 40.0% |
| !!! | GGTTTTTTTGGATCGGTTTG+CGG | + | chr4_4:74080083-74080102 | None:intergenic | 40.0% |
| GAAATTCGATCCGATCATAG+CGG | + | chr4_4:74080162-74080181 | None:intergenic | 40.0% | |
| GCTATGATCGGATCGAATTT+CGG | - | chr4_4:74080161-74080180 | Msa0702440:intron | 40.0% | |
| !!! | TTTACTTTTGCGGTTCGGTT+TGG | + | chr4_4:74080212-74080231 | None:intergenic | 40.0% |
| CGATCCGATCCAAATATATG+CGG | + | chr4_4:74080516-74080535 | None:intergenic | 40.0% | |
| CGCATATATTTGGATCGGAT+CGG | - | chr4_4:74080514-74080533 | Msa0702440:intron | 40.0% | |
| ATATTTGGATCGGATCGGTT+CGG | - | chr4_4:74080519-74080538 | Msa0702440:intron | 40.0% | |
| !! | CGCGTTATTTTACTGGGATT+AGG | + | chr4_4:74080651-74080670 | None:intergenic | 40.0% |
| ! | ACTAGTATACCGATTGAGGT+CGG | + | chr4_4:74081202-74081221 | None:intergenic | 40.0% |
| AAGTTGTAGAGAGAGGTTAG+AGG | + | chr4_4:74081257-74081276 | None:intergenic | 40.0% | |
| GATTTGGATGTTGGGGTTAA+AGG | + | chr4_4:74081302-74081321 | None:intergenic | 40.0% | |
| GTAGAAGGATTTGGATGTTG+GGG | + | chr4_4:74081309-74081328 | None:intergenic | 40.0% | |
| CTGTAGAAGGATTTGGATGT+TGG | + | chr4_4:74081311-74081330 | None:intergenic | 40.0% | |
| TACATGGCTGTAGAAGGATT+TGG | + | chr4_4:74081318-74081337 | None:intergenic | 40.0% | |
| ! | GGTTTTCTCCAATCTGAACT+TGG | - | chr4_4:74081397-74081416 | Msa0702440:intron | 40.0% |
| !! | GCTTTAGAATTGTGCGAACG+TGG | - | chr4_4:74078541-74078560 | Msa0702440:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr4_4:74078948-74078967 | Msa0702440:intron | 45.0% |
| AATCCCGACCACCACAAAAA+AGG | - | chr4_4:74079004-74079023 | Msa0702440:intron | 45.0% | |
| !!! | AGTCCTTTTTTGTGGTGGTC+GGG | + | chr4_4:74079010-74079029 | None:intergenic | 45.0% |
| CGTTTATCACTGAGGAAAGC+TGG | - | chr4_4:74079253-74079272 | Msa0702440:intron | 45.0% | |
| ATACGATGAGTTAGGTCCAC+TGG | - | chr4_4:74079933-74079952 | Msa0702440:intron | 45.0% | |
| GACTAAACAGATCGATCCAG+TGG | + | chr4_4:74079952-74079971 | None:intergenic | 45.0% | |
| GGATTTGAACACCCCTAACT+GGG | + | chr4_4:74080041-74080060 | None:intergenic | 45.0% | |
| TGGATTTGAACACCCCTAAC+TGG | + | chr4_4:74080042-74080061 | None:intergenic | 45.0% | |
| !!! | GGTTCGGTTCGGTTTTGAAA+AGG | + | chr4_4:74080191-74080210 | None:intergenic | 45.0% |
| !!! | TTTTGCGGTTCGGTTTGGTT+CGG | + | chr4_4:74080207-74080226 | None:intergenic | 45.0% |
| !! | AAATCATGTGCGGTTCGGTT+CGG | + | chr4_4:74080569-74080588 | None:intergenic | 45.0% |
| !!! | TTCGGTTTGGATCGGTTTTG+AGG | + | chr4_4:74080617-74080636 | None:intergenic | 45.0% |
| ATCCCAGTAAAATAACGCGG+TGG | - | chr4_4:74080652-74080671 | Msa0702440:intron | 45.0% | |
| !! | CTCCACCGCGTTATTTTACT+GGG | + | chr4_4:74080657-74080676 | None:intergenic | 45.0% |
| ! | ACATTGACGGATCAACCCTA+TGG | - | chr4_4:74081065-74081084 | Msa0702440:intron | 45.0% |
| ! | CATTGACGGATCAACCCTAT+GGG | - | chr4_4:74081066-74081085 | Msa0702440:intron | 45.0% |
| !! | CTTTGGCTCTTACACCCATA+GGG | + | chr4_4:74081083-74081102 | None:intergenic | 45.0% |
| GACCTCAATCGGTATACTAG+TGG | - | chr4_4:74081201-74081220 | Msa0702440:intron | 45.0% | |
| ! | CACCACTAGTATACCGATTG+AGG | + | chr4_4:74081206-74081225 | None:intergenic | 45.0% |
| GAAGGGAAAGTTGTAGAGAG+AGG | + | chr4_4:74081264-74081283 | None:intergenic | 45.0% | |
| TGGGGTTAAAGGTTATACGG+CGG | + | chr4_4:74081291-74081310 | None:intergenic | 45.0% | |
| AGCCATGTAGCTACCACTTA+TGG | - | chr4_4:74081329-74081348 | Msa0702440:intron | 45.0% | |
| CACCATAAGTGGTAGCTACA+TGG | + | chr4_4:74081334-74081353 | None:intergenic | 45.0% | |
| ATTGGAGAAAACCCTGGAAG+GGG | + | chr4_4:74081390-74081409 | None:intergenic | 45.0% | |
| GATTGGAGAAAACCCTGGAA+GGG | + | chr4_4:74081391-74081410 | None:intergenic | 45.0% | |
| AGATTGGAGAAAACCCTGGA+AGG | + | chr4_4:74081392-74081411 | None:intergenic | 45.0% | |
| GTTCAGATTGGAGAAAACCC+TGG | + | chr4_4:74081396-74081415 | None:intergenic | 45.0% | |
| AGAAGCAGCCAAGTTCAGAT+TGG | + | chr4_4:74081408-74081427 | None:intergenic | 45.0% | |
| TGGATCCACAACCCAAACAT+GGG | + | chr4_4:74081499-74081518 | None:intergenic | 45.0% | |
| !! | TTGGGTTGTGGATCCAGTTT+TGG | - | chr4_4:74081503-74081522 | Msa0702440:intron | 45.0% |
| TTTGTGCACCTCTTCTTCGT+CGG | - | chr4_4:74081546-74081565 | Msa0702440:intron | 45.0% | |
| !! | GTGGTTGTTGTTTGGGTTGT+TGG | - | chr4_4:74081680-74081699 | Msa0702440:intron | 45.0% |
| !! | GTTGTTGTTTGGGTTGTTGG+TGG | - | chr4_4:74081683-74081702 | Msa0702440:intron | 45.0% |
| GTTCGTGATCAAAGATTGGG+TGG | - | chr4_4:74081766-74081785 | Msa0702440:intron | 45.0% | |
| !!! | ATTAATTTTTTTTATTCAAT+AGG | - | chr4_4:74078505-74078524 | Msa0702440:intron | 5.0% |
| !! | AAAAAAATAAAATAAATAAC+TGG | + | chr4_4:74079624-74079643 | None:intergenic | 5.0% |
| !!! | ATAAAATAAATGAATAATTT+TGG | - | chr4_4:74079669-74079688 | Msa0702440:intron | 5.0% |
| AGGTCCAACCTATCCCAGTT+AGG | - | chr4_4:74080025-74080044 | Msa0702440:intron | 50.0% | |
| GGTCCAACCTATCCCAGTTA+GGG | - | chr4_4:74080026-74080045 | Msa0702440:intron | 50.0% | |
| GTCCAACCTATCCCAGTTAG+GGG | - | chr4_4:74080027-74080046 | Msa0702440:intron | 50.0% | |
| TGAACACCCCTAACTGGGAT+AGG | + | chr4_4:74080036-74080055 | None:intergenic | 50.0% | |
| !! | CCTCCACCGCGTTATTTTAC+TGG | + | chr4_4:74080658-74080677 | None:intergenic | 50.0% |
| CCAGTAAAATAACGCGGTGG+AGG | - | chr4_4:74080655-74080674 | Msa0702440:intron | 50.0% | |
| TAAAATAACGCGGTGGAGGC+AGG | - | chr4_4:74080659-74080678 | Msa0702440:intron | 50.0% | |
| AAAATAACGCGGTGGAGGCA+GGG | - | chr4_4:74080660-74080679 | Msa0702440:intron | 50.0% | |
| !! | GCTTTGGCTCTTACACCCAT+AGG | + | chr4_4:74081084-74081103 | None:intergenic | 50.0% |
| ATTCAGTTTGGACCCGAGCT+TGG | + | chr4_4:74081166-74081185 | None:intergenic | 50.0% | |
| GGTTAAAGGTTATACGGCGG+TGG | + | chr4_4:74081288-74081307 | None:intergenic | 50.0% | |
| GGTAGCTACATGGCTGTAGA+AGG | + | chr4_4:74081324-74081343 | None:intergenic | 50.0% | |
| GCTGAACGCATCACCATAAG+TGG | + | chr4_4:74081345-74081364 | None:intergenic | 50.0% | |
| TCATCACCAAACCCCTTCCA+GGG | - | chr4_4:74081376-74081395 | Msa0702440:intron | 50.0% | |
| AGAAAACCCTGGAAGGGGTT+TGG | + | chr4_4:74081385-74081404 | None:intergenic | 50.0% | |
| TCTGAACTTGGCTGCTTCTC+TGG | - | chr4_4:74081409-74081428 | Msa0702440:intron | 50.0% | |
| ACAGATCCGAACACCACCAA+CGG | + | chr4_4:74081446-74081465 | None:intergenic | 50.0% | |
| TGGGTTTGCGACCCATGTTT+GGG | - | chr4_4:74081485-74081504 | Msa0702440:intron | 50.0% | |
| CTGGATCCACAACCCAAACA+TGG | + | chr4_4:74081500-74081519 | None:intergenic | 50.0% | |
| !! | GGCACTTGGTGGTTCAGTTT+TGG | - | chr4_4:74081584-74081603 | Msa0702440:intron | 50.0% |
| CTCCACCAACACCAAACAGT+AGG | + | chr4_4:74081645-74081664 | None:intergenic | 50.0% | |
| !! | TGGTGTTGCTGTGTTACCAG+TGG | - | chr4_4:74081703-74081722 | Msa0702440:intron | 50.0% |
| TGTTACCAGTGGTTCGTCGT+CGG | - | chr4_4:74081714-74081733 | Msa0702440:intron | 50.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr4_4:74078946-74078965 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr4_4:74078943-74078962 | Msa0702440:intron | 55.0% | |
| CACCCCTAACTGGGATAGGT+TGG | + | chr4_4:74080032-74080051 | None:intergenic | 55.0% | |
| !! | CGGTTCGGTTTGGTTCGGTT+CGG | + | chr4_4:74080202-74080221 | None:intergenic | 55.0% |
| !! | ATGTGCGGTTCGGTTCGGTT+TGG | + | chr4_4:74080564-74080583 | None:intergenic | 55.0% |
| !! | GTTCGCGGTTCGGTTTGGAT+CGG | + | chr4_4:74080625-74080644 | None:intergenic | 55.0% |
| !! | GATTAGGGGTGTTCGCGGTT+CGG | + | chr4_4:74080635-74080654 | None:intergenic | 55.0% |
| !! | ACTGGGATTAGGGGTGTTCG+CGG | + | chr4_4:74080640-74080659 | None:intergenic | 55.0% |
| GGTTATACGGCGGTGGTGAA+GGG | + | chr4_4:74081281-74081300 | None:intergenic | 55.0% | |
| AGGTTATACGGCGGTGGTGA+AGG | + | chr4_4:74081282-74081301 | None:intergenic | 55.0% | |
| GTCATCACCAAACCCCTTCC+AGG | - | chr4_4:74081375-74081394 | Msa0702440:intron | 55.0% | |
| ! | TGGTGGTGTTCGGATCTGTC+CGG | - | chr4_4:74081447-74081466 | Msa0702440:intron | 55.0% |
| TTCGGATCTGTCCGGACTCT+TGG | - | chr4_4:74081455-74081474 | Msa0702440:intron | 55.0% | |
| ! | CTGTCCGGACTCTTGGTTTG+TGG | - | chr4_4:74081462-74081481 | Msa0702440:intron | 55.0% |
| !! | TCCGGACTCTTGGTTTGTGG+TGG | - | chr4_4:74081465-74081484 | Msa0702440:intron | 55.0% |
| CCCACCACAAACCAAGAGTC+CGG | + | chr4_4:74081469-74081488 | None:intergenic | 55.0% | |
| !! | CCGGACTCTTGGTTTGTGGT+GGG | - | chr4_4:74081466-74081485 | Msa0702440:intron | 55.0% |
| GTGGGTTTGCGACCCATGTT+TGG | - | chr4_4:74081484-74081503 | Msa0702440:intron | 55.0% | |
| !! | TGCGACCCATGTTTGGGTTG+TGG | - | chr4_4:74081491-74081510 | Msa0702440:intron | 55.0% |
| CACCTCTTCTTCGTCGGTGA+GGG | - | chr4_4:74081552-74081571 | Msa0702440:intron | 55.0% | |
| TCTTCTTCGTCGGTGAGGGA+GGG | - | chr4_4:74081556-74081575 | Msa0702440:intron | 55.0% | |
| GGGTTTGTGCGCCTACTGTT+TGG | - | chr4_4:74081631-74081650 | Msa0702440:intron | 55.0% | |
| !! | GTGCGCCTACTGTTTGGTGT+TGG | - | chr4_4:74081637-74081656 | Msa0702440:intron | 55.0% |
| !! | CGCCTACTGTTTGGTGTTGG+TGG | - | chr4_4:74081640-74081659 | Msa0702440:intron | 55.0% |
| CAAACAACAACCACCAGCCG+CGG | + | chr4_4:74081674-74081693 | None:intergenic | 55.0% | |
| !! | GCGGCTGGTGGTTGTTGTTT+GGG | - | chr4_4:74081673-74081692 | Msa0702440:intron | 55.0% |
| GATCCGAACACCACCAACGG+CGG | + | chr4_4:74081443-74081462 | None:intergenic | 60.0% | |
| GCACCTCTTCTTCGTCGGTG+AGG | - | chr4_4:74081551-74081570 | Msa0702440:intron | 60.0% | |
| CTCCCTCACCGACGAAGAAG+AGG | + | chr4_4:74081557-74081576 | None:intergenic | 60.0% | |
| CTCTTCTTCGTCGGTGAGGG+AGG | - | chr4_4:74081555-74081574 | Msa0702440:intron | 60.0% | |
| ! | TGTTGGTGGAGCAACTGCCG+CGG | - | chr4_4:74081654-74081673 | Msa0702440:intron | 60.0% |
| ! | CGCGGCTGGTGGTTGTTGTT+TGG | - | chr4_4:74081672-74081691 | Msa0702440:intron | 60.0% |
| GGTGGTCGGGATTCGAACCC+CGG | + | chr4_4:74078997-74079016 | None:intergenic | 65.0% | |
| !! | GGGGTGTTCGCGGTTCGGTT+TGG | + | chr4_4:74080630-74080649 | None:intergenic | 65.0% |
| ATAACGCGGTGGAGGCAGGG+CGG | - | chr4_4:74080663-74080682 | Msa0702440:intron | 65.0% | |
| TCTTCGTCGGTGAGGGAGGG+TGG | - | chr4_4:74081559-74081578 | Msa0702440:intron | 65.0% | |
| GAGGGAGGGTGGTTGGCACT+TGG | - | chr4_4:74081570-74081589 | Msa0702440:intron | 65.0% | |
| GGAGGGTGGTTGGCACTTGG+TGG | - | chr4_4:74081573-74081592 | Msa0702440:intron | 65.0% | |
| TAACGCGGTGGAGGCAGGGC+GGG | - | chr4_4:74080664-74080683 | Msa0702440:intron | 70.0% | |
| !! | GCGGGGCTAGCTGGCATTCC+AGG | - | chr4_4:74080682-74080701 | Msa0702440:intron | 70.0% |
| CCGAACACCACCAACGGCGG+CGG | + | chr4_4:74081440-74081459 | None:intergenic | 70.0% | |
| !! | CCGCCGCCGTTGGTGGTGTT+CGG | - | chr4_4:74081437-74081456 | Msa0702440:intron | 70.0% |
| CGTCGGTGAGGGAGGGTGGT+TGG | - | chr4_4:74081563-74081582 | Msa0702440:intron | 70.0% | |
| !! | CAGCGCCGACGACGAACCAC+TGG | + | chr4_4:74081722-74081741 | None:intergenic | 70.0% |
| CAGTGGTTCGTCGTCGGCGC+TGG | - | chr4_4:74081720-74081739 | Msa0702440:intron | 70.0% | |
| AACGCGGTGGAGGCAGGGCG+GGG | - | chr4_4:74080665-74080684 | Msa0702440:intron | 75.0% | |
| TCTGGTCTCGCCGCCGCCGT+TGG | - | chr4_4:74081427-74081446 | Msa0702440:intron | 75.0% | |
| GGTGGAGCAACTGCCGCGGC+TGG | - | chr4_4:74081658-74081677 | Msa0702440:intron | 75.0% | |
| GGAGCAACTGCCGCGGCTGG+TGG | - | chr4_4:74081661-74081680 | Msa0702440:intron | 75.0% | |
| !! | GGAGGCAGGGCGGGGCTAGC+TGG | - | chr4_4:74080673-74080692 | Msa0702440:intron | 80.0% |
| ! | GGTCTCGCCGCCGCCGTTGG+TGG | - | chr4_4:74081430-74081449 | Msa0702440:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 74077836 | 74081792 | 74077836 | ID=Msa0702440;Name=Msa0702440 |
| chr4_4 | mRNA | 74077836 | 74081792 | 74077836 | ID=Msa0702440-mRNA-1;Parent=Msa0702440;Name=Msa0702440-mRNA-1;_AED=0.99;_eAED=1.00;_QI=0|0|0|0.5|1|0.5|2|0|145 |
| chr4_4 | exon | 74081784 | 74081792 | 74081784 | ID=Msa0702440-mRNA-1:exon:22954;Parent=Msa0702440-mRNA-1 |
| chr4_4 | exon | 74077836 | 74078264 | 74077836 | ID=Msa0702440-mRNA-1:exon:22953;Parent=Msa0702440-mRNA-1 |
| chr4_4 | CDS | 74081784 | 74081792 | 74081784 | ID=Msa0702440-mRNA-1:cds;Parent=Msa0702440-mRNA-1 |
| chr4_4 | CDS | 74077836 | 74078264 | 74077836 | ID=Msa0702440-mRNA-1:cds;Parent=Msa0702440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
