AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1382540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382540 MtrunA17_Chr1g0155251 99.226 646 2 1 1 646 1 643 0.0 1311
Msa1382540 MtrunA17_Chr5g0437031 88.479 651 67 2 1 646 1 648 0.0 1110
Msa1382540 MtrunA17_Chr3g0143991 44.681 94 47 3 539 630 25 115 2.65e-11 62.4
Msa1382540 MtrunA17_Chr7g0242251 43.750 80 41 2 554 632 47 123 7.75e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382540 AT3G28730.1 75.501 649 151 6 1 645 1 645 0.0 927
Msa1382540 AT3G51880.2 45.455 88 44 2 545 631 40 124 1.51e-13 70.1
Msa1382540 AT3G51880.4 45.455 88 44 2 545 631 40 124 1.81e-13 68.9
Msa1382540 AT3G51880.5 45.455 88 44 2 545 631 40 124 2.07e-13 69.3
Msa1382540 AT3G51880.1 45.455 88 44 2 545 631 40 124 2.07e-13 69.3
Msa1382540 AT3G51880.3 45.455 88 44 2 545 631 40 124 2.07e-13 69.3
Msa1382540 AT1G20693.2 46.835 79 38 2 553 630 33 108 1.81e-11 62.8
Msa1382540 AT1G20693.3 46.835 79 38 2 553 630 33 108 1.88e-11 62.8
Msa1382540 AT1G20693.1 46.835 79 38 2 553 630 33 108 1.93e-11 62.8

Find 208 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGTTGCCTTAATATTAA+TGG 0.236445 tig0020520:+38769 Msa1382540:exon
ATCCTTCTTTGGTTCCTTCT+TGG 0.242213 tig0020520:-38181 None:intergenic
GTCCTGCCCATGCAGTTCTA+AGG 0.253010 tig0020520:+37407 Msa1382540:intron
TTACCAAGCCTGGAAAATTT+AGG 0.253732 tig0020520:+36937 Msa1382540:CDS
CGGGAATACCATTAATATTA+AGG 0.257243 tig0020520:-38777 None:intergenic
AGAAAGAGGTCCCACAATTT+TGG 0.272086 tig0020520:-39202 None:intergenic
AGAATAAGAGTGGGAGGTTT+AGG 0.278835 tig0020520:-37047 None:intergenic
AGGAAATATGCTGGCTTTCA+TGG 0.282409 tig0020520:+35463 Msa1382540:intron
AAAGAAGGATTTGCCTTCTA+AGG 0.286151 tig0020520:+38194 Msa1382540:CDS
CCGTGATAAAATAATGTCTA+TGG 0.288359 tig0020520:+35958 Msa1382540:CDS
TTTCTGTTACTGGGCGCAAT+TGG 0.293918 tig0020520:+34801 Msa1382540:CDS
TTAGAAGGCAAATCCTTCTT+TGG 0.294241 tig0020520:-38192 None:intergenic
CAGTTACTCCGAAGGTGTTT+TGG 0.314648 tig0020520:-34763 None:intergenic
GAGAAGCAACTTTCTGTTAC+TGG 0.317850 tig0020520:+34791 Msa1382540:CDS
TTCTGTTACTGGGCGCAATT+GGG 0.318614 tig0020520:+34802 Msa1382540:CDS
ATTCATTTCTCTGAATATTT+CGG 0.320481 tig0020520:-37293 None:intergenic
CAACCCATGAATATTGATTC+AGG 0.326088 tig0020520:+38727 Msa1382540:CDS
ACACCAAGTTGATTCGTCTT+TGG 0.335862 tig0020520:-34460 None:intergenic
TTCTTTGGTTCCTTCTTGGC+AGG 0.345422 tig0020520:-38177 None:intergenic
TAATCCTGGAATTTCATTTA+CGG 0.345587 tig0020520:+38452 Msa1382540:CDS
CTTTCTAGACCCTGCTCATC+CGG 0.350701 tig0020520:+39219 Msa1382540:three_prime_UTR
TCTTGGGCTTTGGCCTCATA+AGG 0.353348 tig0020520:-38655 None:intergenic
GAAGAAACAGAAGAAGAAAA+AGG 0.353379 tig0020520:+38269 Msa1382540:CDS
TTTCCCTTGAAGGTTTGTTT+GGG 0.354507 tig0020520:-35528 None:intergenic
ATCTCAGAAAGATTCTTTGA+TGG 0.362156 tig0020520:+35779 Msa1382540:intron
AAACCAGACAGTGCCCTCTT+AGG 0.362568 tig0020520:-38303 None:intergenic
GATCTTCATCACCAACAAAC+TGG 0.364930 tig0020520:-35833 None:intergenic
AATGAATACCACAATTTGTA+TGG 0.365076 tig0020520:+37309 Msa1382540:CDS
ATTTCCTGAATCAATATTCA+TGG 0.371026 tig0020520:-38731 None:intergenic
GGTTCTCCTACTGATGATTC+TGG 0.376502 tig0020520:+38016 Msa1382540:CDS
TGTCGATTTACCGTTACAAT+AGG 0.381736 tig0020520:-38885 None:intergenic
GATGCTGTTGTTACATTTGA+GGG 0.383536 tig0020520:+36004 Msa1382540:CDS
AGTGCCCTCTTAGGTGCATT+TGG 0.384070 tig0020520:-38294 None:intergenic
TTAGTCTTGATCCTCCTATT+CGG 0.386509 tig0020520:+36445 Msa1382540:CDS
TTAGAAGTAGATGCCTTAGA+AGG 0.388977 tig0020520:-38207 None:intergenic
TAACGGGCTGCTTGTTTGAA+TGG 0.396951 tig0020520:+38969 Msa1382540:three_prime_UTR
TGGTAAGGACACTTGATAAA+GGG 0.401651 tig0020520:-39264 None:intergenic
ATTACCTGCATCACGATATG+AGG 0.403729 tig0020520:-36486 None:intergenic
CTATGTCCCCGGGGTTATAA+CGG 0.410143 tig0020520:+38952 Msa1382540:three_prime_UTR
GTTGATAAGGCGGACATAAC+GGG 0.414369 tig0020520:+34418 Msa1382540:CDS
ATCACCAACAAACTGGGTAT+TGG 0.417370 tig0020520:-35826 None:intergenic
ACAATATTGCGTGGTTTGTC+CGG 0.417906 tig0020520:+36906 Msa1382540:CDS
CAATACATTACCTTGGTGTA+AGG 0.418775 tig0020520:-36036 None:intergenic
GGCGAACCACACTGCCGTAC+TGG 0.419521 tig0020520:-36242 None:intergenic
GTTTGAGTGTTCTATGTCCC+CGG 0.420624 tig0020520:+38941 Msa1382540:three_prime_UTR
ATTCACTGGTTTCCGTGATC+AGG 0.421922 tig0020520:+34510 Msa1382540:CDS
TAAAACTGCAGCCAAGCAAT+CGG 0.425637 tig0020520:-38797 None:intergenic
AAAGTCTGCCCTTTCCGAAT+AGG 0.427601 tig0020520:-36459 None:intergenic
ATATTGTGGTAAACACTTCA+TGG 0.428597 tig0020520:-36890 None:intergenic
GGCCACACCAACAGTTGGTT+GGG 0.430545 tig0020520:-37457 None:intergenic
CGGTGCCGCCACGGCCGCCG+AGG 0.437836 tig0020520:-33167 None:intergenic
AGTTCCAATACCCAGTTTGT+TGG 0.440167 tig0020520:+35822 Msa1382540:CDS
ACGGACGTGGGAAGAGTACT+TGG 0.442183 tig0020520:+38471 Msa1382540:CDS
TTGGTAAGGACACTTGATAA+AGG 0.442416 tig0020520:-39265 None:intergenic
CTTGGTGTTCAGATCAAAGA+TGG 0.447302 tig0020520:+34475 Msa1382540:CDS
TCCTGCCCATGCAGTTCTAA+GGG 0.450476 tig0020520:+37408 Msa1382540:intron
TTTGTTCTCGACAAGGATGA+TGG 0.451598 tig0020520:+37992 Msa1382540:CDS
GTCTCCCAAACAAACCTTCA+AGG 0.458044 tig0020520:+35524 Msa1382540:CDS
ATTAATATTAAGGCAACCTT+AGG 0.458269 tig0020520:-38767 None:intergenic
CATGCAGCCATACCTTGATA+AGG 0.460314 tig0020520:-39172 None:intergenic
ACACCTTCGGAGTAACTGTT+GGG 0.460966 tig0020520:+34768 Msa1382540:CDS
AGATGCTGTTGTTACATTTG+AGG 0.462575 tig0020520:+36003 Msa1382540:CDS
AATCTAAAGAAAACTAATCC+TGG 0.464926 tig0020520:+38438 Msa1382540:CDS
TGAAGATCGCCCTCCTGCTC+AGG 0.466330 tig0020520:+35848 Msa1382540:CDS
TAATGGTATTCCCGATTGCT+TGG 0.467642 tig0020520:+38786 Msa1382540:three_prime_UTR
ACTAAAGCTCCCGGATGAGC+AGG 0.468194 tig0020520:-39229 None:intergenic
TGGAATTTCATTTACGGACG+TGG 0.473424 tig0020520:+38458 Msa1382540:CDS
GGAGGCAAAGTTACCAAGCC+TGG 0.474637 tig0020520:+36927 Msa1382540:CDS
TGTTGATAAGGCGGACATAA+CGG 0.474692 tig0020520:+34417 Msa1382540:CDS
TTATTGGTGCTGCAGAATCC+GGG 0.475067 tig0020520:+34331 Msa1382540:intron
TTGAATGGCTTGAGGAAGGC+TGG 0.475918 tig0020520:+38984 Msa1382540:three_prime_UTR
TGGGGAGAAGTTGATCTAAA+CGG 0.476817 tig0020520:+34821 Msa1382540:CDS
TTATGTGGTTGAAAGTGAAT+TGG 0.478915 tig0020520:+36612 Msa1382540:CDS
CAAATCAATTGATGTTGATA+AGG 0.479324 tig0020520:+34405 Msa1382540:CDS
TTTGAGTGTTCTATGTCCCC+GGG 0.479327 tig0020520:+38942 Msa1382540:three_prime_UTR
AACATTACCCTCGGCGGCCG+TGG 0.480494 tig0020520:+33159 Msa1382540:CDS
TATGTCCCCGGGGTTATAAC+GGG 0.482750 tig0020520:+38953 Msa1382540:three_prime_UTR
GAATCAATATTCATGGGTTG+AGG 0.486272 tig0020520:-38724 None:intergenic
TGGCCACACCAACAGTTGGT+TGG 0.488815 tig0020520:-37458 None:intergenic
TTTCATTTCAGGAAATATGC+TGG 0.489570 tig0020520:+35454 Msa1382540:intron
AGGCTTGGTAACTTTGCCTC+CGG 0.495486 tig0020520:-36925 None:intergenic
ACAGACAAACTCACCTGAGC+AGG 0.497300 tig0020520:-35861 None:intergenic
AGTTTCTTCCAAAACACCTT+CGG 0.497818 tig0020520:+34755 Msa1382540:CDS
CAGATTTGAGTCTGATAAGA+AGG 0.497842 tig0020520:-37254 None:intergenic
TTTCACGTGGATGACACAAC+TGG 0.498298 tig0020520:+35569 Msa1382540:CDS
CACTCTTATTCTTCATGAAG+AGG 0.498347 tig0020520:+37058 Msa1382540:CDS
GCACCTAAGAGGGCACTGTC+TGG 0.501489 tig0020520:+38300 Msa1382540:CDS
AGAAGCAACTTTCTGTTACT+GGG 0.502319 tig0020520:+34792 Msa1382540:CDS
GGGTTGTTCTACAAATTCAC+TGG 0.502970 tig0020520:+34496 Msa1382540:CDS
AGGATCCAAATGCACCTAAG+AGG 0.505192 tig0020520:+38289 Msa1382540:CDS
CTTCCAGAAACCTGCCAAGA+AGG 0.506566 tig0020520:+38167 Msa1382540:intron
TGCCAAGAAGGAACCAAAGA+AGG 0.508120 tig0020520:+38179 Msa1382540:CDS
TCTATGGCTGATGTTGGTGC+TGG 0.508943 tig0020520:+35974 Msa1382540:CDS
TTTCTGATGCGCTCGAGATG+TGG 0.509278 tig0020520:-37516 None:intergenic
CCTCTGTCTCACCACCACTT+TGG 0.510686 tig0020520:-38060 None:intergenic
TCATCTTTGAAAGCTGAAGA+TGG 0.512966 tig0020520:+36987 Msa1382540:CDS
GGAGGAGAAGGAACCTTATG+AGG 0.513515 tig0020520:+38642 Msa1382540:CDS
AATATGCTGGCTTTCATGGT+TGG 0.513596 tig0020520:+35467 Msa1382540:CDS
ACGTCCGTAAATGAAATTCC+AGG 0.513793 tig0020520:-38456 None:intergenic
CAAGTTGGAGCTGTCTTACA+AGG 0.514183 tig0020520:+36672 Msa1382540:CDS
GTACCCTCATATCGTGATGC+AGG 0.515876 tig0020520:+36482 Msa1382540:CDS
CTGCTTGTTTGAATGGCTTG+AGG 0.516394 tig0020520:+38976 Msa1382540:three_prime_UTR
ACAAACTGGGTATTGGAACT+TGG 0.516545 tig0020520:-35819 None:intergenic
TTGTTTGAATGGCTTGAGGA+AGG 0.518576 tig0020520:+38980 Msa1382540:three_prime_UTR
ATGCAGCCATACCTTGATAA+GGG 0.518872 tig0020520:-39171 None:intergenic
TTTCCTGAATCAATATTCAT+GGG 0.520202 tig0020520:-38730 None:intergenic
GGGTATTGGAACTTGGTACA+TGG 0.520299 tig0020520:-35812 None:intergenic
AGGAAGGCTGGAGAAGGATG+AGG 0.522393 tig0020520:+38996 Msa1382540:three_prime_UTR
GTAGTTTGAAACTGATTATG+TGG 0.523537 tig0020520:+36597 Msa1382540:intron
TTCCTACTAGATTGACTATG+TGG 0.523757 tig0020520:+37185 Msa1382540:intron
ATTACCCTCGGCGGCCGTGG+CGG 0.524515 tig0020520:+33162 Msa1382540:CDS
AAAACTGCAGCCAAGCAATC+GGG 0.526477 tig0020520:-38796 None:intergenic
CTCAAAGTACAAAGACAAGT+TGG 0.526767 tig0020520:+36657 Msa1382540:CDS
ACCAACTGTTGGTGTGGCCA+AGG 0.529642 tig0020520:+37461 Msa1382540:CDS
CGGACATAACGGGCGTAACA+TGG 0.530617 tig0020520:+34428 Msa1382540:CDS
AATGAATCTGACAGTGCCTA+AGG 0.531097 tig0020520:+38751 Msa1382540:CDS
ATGGCTGATGTTGGTGCTGG+AGG 0.532027 tig0020520:+35977 Msa1382540:CDS
TGATAAAACCATACAAATTG+TGG 0.532500 tig0020520:-37317 None:intergenic
GTAATTCAGTAATAACATAC+TGG 0.532948 tig0020520:+39054 Msa1382540:three_prime_UTR
TTTCTAGACCCTGCTCATCC+GGG 0.534065 tig0020520:+39220 Msa1382540:three_prime_UTR
AAGTATCCCTTATCAAGGTA+TGG 0.535971 tig0020520:+39165 Msa1382540:three_prime_UTR
TTGATCCTCCTATTCGGAAA+GGG 0.536206 tig0020520:+36451 Msa1382540:CDS
CTCTTCAACAACATTACCCT+CGG 0.540205 tig0020520:+33150 Msa1382540:CDS
ATGCAATACACCAAAATTGT+GGG 0.542628 tig0020520:+39192 Msa1382540:three_prime_UTR
GGTGCCGCCACGGCCGCCGA+GGG 0.543217 tig0020520:-33166 None:intergenic
GAATTTGAGCGACATGCTGC+TGG 0.545421 tig0020520:+37207 Msa1382540:CDS
AACACCTTCGGAGTAACTGT+TGG 0.545941 tig0020520:+34767 Msa1382540:CDS
CATGCAATACACCAAAATTG+TGG 0.547983 tig0020520:+39191 Msa1382540:three_prime_UTR
AAATTTAGGAGTTGTCAAGA+TGG 0.550659 tig0020520:+36951 Msa1382540:CDS
ATCTTCATCACCAACAAACT+GGG 0.552179 tig0020520:-35832 None:intergenic
GGCTTGAGGAAGGCTGGAGA+AGG 0.552278 tig0020520:+38990 Msa1382540:three_prime_UTR
TTGATATTTCTTAAATGTGG+TGG 0.556537 tig0020520:+38857 Msa1382540:three_prime_UTR
GAAAGAAGAAGCTCTTCTCA+AGG 0.556630 tig0020520:-37022 None:intergenic
AAGCAGCCCGTTATAACCCC+GGG 0.558730 tig0020520:-38959 None:intergenic
GGATCCAAATGCACCTAAGA+GGG 0.559964 tig0020520:+38290 Msa1382540:CDS
ACATGGTGCACTAAAGCTCC+CGG 0.562056 tig0020520:-39238 None:intergenic
ATATCAAGTATCCCTTATCA+AGG 0.563880 tig0020520:+39160 Msa1382540:three_prime_UTR
AAAGAAGAAGCTCTTCTCAA+GGG 0.564045 tig0020520:-37021 None:intergenic
GTTCTTATCAAGTATCTGAT+CGG 0.564175 tig0020520:+39090 Msa1382540:three_prime_UTR
TCTCTTTCTCGCCACCATGA+CGG 0.565013 tig0020520:+33119 Msa1382540:exon
GTCTGCCCTTTCCGAATAGG+AGG 0.565917 tig0020520:-36456 None:intergenic
GTTCCAAAGACGAATCAACT+TGG 0.567452 tig0020520:+34457 Msa1382540:CDS
GACAAACTCACCTGAGCAGG+AGG 0.567937 tig0020520:-35858 None:intergenic
TGACACAACTGGAGCAAATG+AGG 0.569007 tig0020520:+35580 Msa1382540:CDS
ACCTTGGCCACACCAACAGT+TGG 0.570641 tig0020520:-37462 None:intergenic
GAGCGCATCAGAAATGAAGC+TGG 0.571748 tig0020520:+37525 Msa1382540:CDS
ATCATCATTCTCAAGCACCT+TGG 0.580790 tig0020520:-37478 None:intergenic
CTTGATCCTCCTATTCGGAA+AGG 0.581438 tig0020520:+36450 Msa1382540:CDS
TCAATACACAGCGGAGGAGA+AGG 0.582588 tig0020520:+38630 Msa1382540:intron
CACTTGATAAAGGGGCAACA+TGG 0.585823 tig0020520:-39255 None:intergenic
TTGTCTCTGCACACTGAGAG+AGG 0.586134 tig0020520:-33068 None:intergenic
AACGGGCGTAACATGGATGA+AGG 0.587136 tig0020520:+34435 Msa1382540:CDS
CTCTTCATGAAGAATAAGAG+TGG 0.590015 tig0020520:-37057 None:intergenic
ACTTGATAAGAACCACTAGC+AGG 0.590226 tig0020520:-39080 None:intergenic
TCTGTTACTGGGCGCAATTG+GGG 0.591812 tig0020520:+34803 Msa1382540:CDS
GGTAAGGACACTTGATAAAG+GGG 0.594577 tig0020520:-39263 None:intergenic
GATGAGCAGGGTCTAGAAAG+AGG 0.595240 tig0020520:-39216 None:intergenic
TCTCCCAAACAAACCTTCAA+GGG 0.596624 tig0020520:+35525 Msa1382540:CDS
ATCAATTGATGTTGATAAGG+CGG 0.597783 tig0020520:+34408 Msa1382540:CDS
CAAGCAGCCCGTTATAACCC+CGG 0.597907 tig0020520:-38960 None:intergenic
AACGATTTCAAAATCCAGTA+CGG 0.603043 tig0020520:+36228 Msa1382540:CDS
CGCATCAGAAATGAAGCTGG+TGG 0.603857 tig0020520:+37528 Msa1382540:CDS
CTAAAGCTCCCGGATGAGCA+GGG 0.606043 tig0020520:-39228 None:intergenic
GGACAAACCACGCAATATTG+TGG 0.607048 tig0020520:-36904 None:intergenic
TTATGGAAGAGACAGGGAGG+TGG 0.608219 tig0020520:+34382 Msa1382540:CDS
ATATTGCGTGGTTTGTCCGG+AGG 0.609437 tig0020520:+36909 Msa1382540:CDS
AAGAAGAAGCTCTTCTCAAG+GGG 0.618644 tig0020520:-37020 None:intergenic
TGTCTCTGCACACTGAGAGA+GGG 0.619084 tig0020520:-33067 None:intergenic
GGAATTTCATTTACGGACGT+GGG 0.619820 tig0020520:+38459 Msa1382540:CDS
TCAAAAGATGCTGATGACGA+AGG 0.621100 tig0020520:+38237 Msa1382540:CDS
GAGAGCTTACGGTGCCGCCA+CGG 0.622395 tig0020520:-33176 None:intergenic
GGTGGTATCTCCTATTGTAA+CGG 0.623791 tig0020520:+38875 Msa1382540:three_prime_UTR
TTGGTGTTCAGATCAAAGAT+GGG 0.623826 tig0020520:+34476 Msa1382540:CDS
CTCCCCAACAGTTACTCCGA+AGG 0.624094 tig0020520:-34771 None:intergenic
ACATACTGGTTACCTGCTAG+TGG 0.626603 tig0020520:+39068 Msa1382540:three_prime_UTR
TCATGAAGAATAAGAGTGGG+AGG 0.627094 tig0020520:-37053 None:intergenic
TTTGAGCGACATGCTGCTGG+TGG 0.628138 tig0020520:+37210 Msa1382540:CDS
GACTCTGATGCTAGCCAAAG+TGG 0.628895 tig0020520:+38046 Msa1382540:CDS
TGCCCAACCAACTGTTGGTG+TGG 0.630617 tig0020520:+37455 Msa1382540:CDS
GTTCTCGACAAGGATGATGG+AGG 0.634483 tig0020520:+37995 Msa1382540:CDS
GAAGAGATGACCGTCCGTCA+TGG 0.634783 tig0020520:-33133 None:intergenic
CCAAAGTGGTGGTGAGACAG+AGG 0.637450 tig0020520:+38060 Msa1382540:CDS
TATTGGTGCTGCAGAATCCG+GGG 0.638125 tig0020520:+34332 Msa1382540:intron
CTAATAATGACGAAGGTATG+CGG 0.638553 tig0020520:-36426 None:intergenic
GACGGAGAACTACCTGATCA+CGG 0.641013 tig0020520:-34522 None:intergenic
ATCAAGACTAATAATGACGA+AGG 0.641692 tig0020520:-36433 None:intergenic
TCTTCATGAAGAATAAGAGT+GGG 0.642579 tig0020520:-37056 None:intergenic
ATAATGTCTATGGCTGATGT+TGG 0.645958 tig0020520:+35968 Msa1382540:CDS
TTTCTCGCCACCATGACGGA+CGG 0.646406 tig0020520:+33123 Msa1382540:exon
GCGCTCGAGATGTGGATCGA+CGG 0.648144 tig0020520:-37508 None:intergenic
GTGTTTACCACAATATTGCG+TGG 0.650738 tig0020520:+36897 Msa1382540:CDS
GCTGATGCCCAACCAACTGT+TGG 0.651825 tig0020520:+37450 Msa1382540:CDS
TTACCTGCATCACGATATGA+GGG 0.656286 tig0020520:-36485 None:intergenic
AAAGATGCTGATGACGAAGG+AGG 0.658535 tig0020520:+38240 Msa1382540:CDS
TCTGCACCAGAATCATCAGT+AGG 0.661015 tig0020520:-38022 None:intergenic
CGTTACAAGGATGAGATGAG+TGG 0.662650 tig0020520:+38688 Msa1382540:CDS
CACCTTCGGAGTAACTGTTG+GGG 0.674663 tig0020520:+34769 Msa1382540:CDS
CAAAATCCAGTACGGCAGTG+TGG 0.675240 tig0020520:+36236 Msa1382540:CDS
GAGATGACCGTCCGTCATGG+TGG 0.684087 tig0020520:-33130 None:intergenic
ACAAACTCACCTGAGCAGGA+GGG 0.692093 tig0020520:-35857 None:intergenic
TGGTGGAGATGAAAGTGACG+AGG 0.704697 tig0020520:+37545 Msa1382540:CDS
TGTGATGTTGGAGTTTCACG+TGG 0.716384 tig0020520:+35556 Msa1382540:CDS
TTGAGTGTTCTATGTCCCCG+GGG 0.746581 tig0020520:+38943 Msa1382540:three_prime_UTR
TCTGATGCTAGCCAAAGTGG+TGG 0.752107 tig0020520:+38049 Msa1382540:CDS
TGGAGATGAAAGTGACGAGG+AGG 0.754949 tig0020520:+37548 Msa1382540:CDS
TTCAACAACATTACCCTCGG+CGG 0.763342 tig0020520:+33153 Msa1382540:CDS
GTATTGCAATCCTTACACCA+AGG 0.765044 tig0020520:+36026 Msa1382540:CDS
AGCAGCCCGTTATAACCCCG+GGG 0.772409 tig0020520:-38958 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATTTATTGAAAAAAAAT+GGG + tig0020520:33462-33481 Msa1382540:intron 10.0%
!!! AAATATTAGAGTTTTTTTTA+TGG + tig0020520:37153-37172 Msa1382540:intron 10.0%
!! GTAGATTTATTGAAAAAAAA+TGG + tig0020520:33461-33480 Msa1382540:intron 15.0%
!! AAAATAATAATGAAAAGATG+AGG + tig0020520:34235-34254 Msa1382540:intron 15.0%
!! TACACTTATATTTGTATTAT+TGG + tig0020520:34315-34334 Msa1382540:intron 15.0%
!!! AAATATCTTTGAAAATAGTA+GGG - tig0020520:35019-35038 None:intergenic 15.0%
!!! TAAATATCTTTGAAAATAGT+AGG - tig0020520:35020-35039 None:intergenic 15.0%
!!! GGTATATATATATATAGTTT+TGG + tig0020520:35601-35620 Msa1382540:intron 15.0%
!! TATATTAAAAACAAAAAGCA+AGG - tig0020520:36299-36318 None:intergenic 15.0%
!!! TGCTTTTGTATATATTAAAT+TGG + tig0020520:37944-37963 Msa1382540:intron 15.0%
!! AAAAGGAATTACAAAAGTTA+GGG - tig0020520:33287-33306 None:intergenic 20.0%
!! AAAAAGGAATTACAAAAGTT+AGG - tig0020520:33288-33307 None:intergenic 20.0%
!! AAATTAGGGATTAACAAAAA+TGG - tig0020520:33360-33379 None:intergenic 20.0%
!! TTAAATATCCATCTAGTATT+AGG + tig0020520:33625-33644 Msa1382540:intron 20.0%
!!! ATAAGTTTTGTAAGACTATT+TGG - tig0020520:34112-34131 None:intergenic 20.0%
!! AACATGTAAATACATATTCA+GGG - tig0020520:34549-34568 None:intergenic 20.0%
!! AAACATGTAAATACATATTC+AGG - tig0020520:34550-34569 None:intergenic 20.0%
!! ATCAAACACATAAATTTACT+CGG - tig0020520:34920-34939 None:intergenic 20.0%
!! TAAAAATGGGTACAAAAAAA+CGG - tig0020520:35134-35153 None:intergenic 20.0%
!! AATAGAACCAACTTAAAAAT+GGG - tig0020520:35147-35166 None:intergenic 20.0%
!! AAATAGAACCAACTTAAAAA+TGG - tig0020520:35148-35167 None:intergenic 20.0%
!!! TAAGTTGGTTCTATTTTTTT+TGG + tig0020520:35152-35171 Msa1382540:intron 20.0%
!!! AAGTTGGTTCTATTTTTTTT+GGG + tig0020520:35153-35172 Msa1382540:intron 20.0%
!! GAAATGAAAATAGAAACATA+AGG - tig0020520:35443-35462 None:intergenic 20.0%
!!! TATGTTTCTATTTTCATTTC+AGG + tig0020520:35443-35462 Msa1382540:intron 20.0%
!!! TGACATTTGTAAAATCATTT+TGG + tig0020520:35924-35943 Msa1382540:intron 20.0%
!!! TGTAAAATCATTTTGGTATT+AGG + tig0020520:35931-35950 Msa1382540:intron 20.0%
!! TAATTCACTATTCAATAATC+AGG + tig0020520:36860-36879 Msa1382540:intron 20.0%
!! AATTCACTATTCAATAATCA+GGG + tig0020520:36861-36880 Msa1382540:intron 20.0%
!! ATTCATTTCTCTGAATATTT+CGG - tig0020520:37296-37315 None:intergenic 20.0%
!!! CAAATATGTGTGATAAATTT+TGG - tig0020520:37362-37381 None:intergenic 20.0%
!! AATATAATAGGCTAAGATTA+TGG - tig0020520:38572-38591 None:intergenic 20.0%
!! CACAAACACAAAAATATAAT+AGG - tig0020520:38584-38603 None:intergenic 20.0%
!!! GTTTTGATATTTCTTAAATG+TGG + tig0020520:38854-38873 Msa1382540:three_prime_UTR 20.0%
!!! AGGGTTTATGATTTTGAAAA+AGG - tig0020520:33304-33323 None:intergenic 25.0%
! AAATCATAAACCCTAATACT+AGG + tig0020520:33310-33329 Msa1382540:intron 25.0%
! AATCATAAACCCTAATACTA+GGG + tig0020520:33311-33330 Msa1382540:intron 25.0%
!! AATCACACTTTACACATTTT+TGG - tig0020520:33550-33569 None:intergenic 25.0%
! TGAAAACAACTTATGAACAA+TGG + tig0020520:33817-33836 Msa1382540:intron 25.0%
! CAGATAAAAATATATTCTGG+AGG + tig0020520:34355-34374 Msa1382540:CDS 25.0%
!!! TATATTCTGGAGGAATTTTA+TGG + tig0020520:34365-34384 Msa1382540:CDS 25.0%
! CAAATCAATTGATGTTGATA+AGG + tig0020520:34405-34424 Msa1382540:CDS 25.0%
! ACATGTAAATACATATTCAG+GGG - tig0020520:34548-34567 None:intergenic 25.0%
!!! CATGTTTTTGATGTTGAAAA+AGG + tig0020520:34563-34582 Msa1382540:intron 25.0%
! GAAAAAGGAATTCAATTGTT+TGG + tig0020520:34578-34597 Msa1382540:intron 25.0%
!!! ACGTTTTATACTTATTTTGC+AGG + tig0020520:34715-34734 Msa1382540:intron 25.0%
! GAGTAAATTTATGTGTTTGA+TGG + tig0020520:34919-34938 Msa1382540:intron 25.0%
! ATGTTTGACATCGTTTATAA+TGG + tig0020520:34947-34966 Msa1382540:intron 25.0%
!! AATTACCCTGAATTTTACAA+AGG - tig0020520:35078-35097 None:intergenic 25.0%
! TTCCTTATAAAAAGAAACAC+CGG + tig0020520:35097-35116 Msa1382540:intron 25.0%
!!! TTTTGTACCCATTTTTAAGT+TGG + tig0020520:35137-35156 Msa1382540:intron 25.0%
! TCTAATGAATTGATACAGTT+TGG + tig0020520:35628-35647 Msa1382540:intron 25.0%
!!! TTTTGGAATTGCGTTTTTTA+TGG + tig0020520:35735-35754 Msa1382540:intron 25.0%
! ATCTTGTTACAGCAAATTAT+AGG + tig0020520:35897-35916 Msa1382540:intron 25.0%
!!! CCATAGACATTATTTTATCA+CGG - tig0020520:35961-35980 None:intergenic 25.0%
!! AGATCAATCTTTTTCTTGAA+AGG - tig0020520:36129-36148 None:intergenic 25.0%
!!! AATTACACTTGTCATTTTTG+CGG + tig0020520:36190-36209 Msa1382540:CDS 25.0%
! AAACCTTAGGAAGTAAAAAT+AGG - tig0020520:36266-36285 None:intergenic 25.0%
! AAAAACAAAAAGCAAGGATT+AGG - tig0020520:36293-36312 None:intergenic 25.0%
! AAAGAATCAATTTACATGTG+TGG - tig0020520:36335-36354 None:intergenic 25.0%
!!! TGTAAATTGATTCTTTTCTC+TGG + tig0020520:36339-36358 Msa1382540:intron 25.0%
!!! TTGACTAAACTGTTGATAAT+TGG + tig0020520:36697-36716 Msa1382540:intron 25.0%
!!! TGACTAAACTGTTGATAATT+GGG + tig0020520:36698-36717 Msa1382540:intron 25.0%
! ATTCACTATTCAATAATCAG+GGG + tig0020520:36862-36881 Msa1382540:intron 25.0%
!! GAAACTAACATTTGGTATTT+TGG - tig0020520:37110-37129 None:intergenic 25.0%
!! AAATACCAAATGTTAGTTTC+TGG + tig0020520:37110-37129 Msa1382540:intron 25.0%
! AATGAATACCACAATTTGTA+TGG + tig0020520:37309-37328 Msa1382540:CDS 25.0%
! TGATAAAACCATACAAATTG+TGG - tig0020520:37320-37339 None:intergenic 25.0%
!!! ACAATTTGTATGGTTTTATC+AGG + tig0020520:37319-37338 Msa1382540:CDS 25.0%
! TGTTCTAATTTAAGTGATTG+AGG + tig0020520:37646-37665 Msa1382540:intron 25.0%
! TAGATATATTCAAATGAGGT+TGG - tig0020520:37691-37710 None:intergenic 25.0%
! TGCTTAGATATATTCAAATG+AGG - tig0020520:37695-37714 None:intergenic 25.0%
! AATCTAAAGAAAACTAATCC+TGG + tig0020520:38438-38457 Msa1382540:CDS 25.0%
! TAATCCTGGAATTTCATTTA+CGG + tig0020520:38452-38471 Msa1382540:CDS 25.0%
! AGAAAAATGGAAAAATCTGT+CGG + tig0020520:38494-38513 Msa1382540:CDS 25.0%
! TTTCCTGAATCAATATTCAT+GGG - tig0020520:38733-38752 None:intergenic 25.0%
! ATTTCCTGAATCAATATTCA+TGG - tig0020520:38734-38753 None:intergenic 25.0%
! ATTAATATTAAGGCAACCTT+AGG - tig0020520:38770-38789 None:intergenic 25.0%
! TAAGGTTGCCTTAATATTAA+TGG + tig0020520:38769-38788 Msa1382540:exon 25.0%
! TTGATATTTCTTAAATGTGG+TGG + tig0020520:38857-38876 Msa1382540:three_prime_UTR 25.0%
! GTAATTCAGTAATAACATAC+TGG + tig0020520:39054-39073 Msa1382540:three_prime_UTR 25.0%
GGTTATTCAAAAAGAGGAAA+TGG - tig0020520:33266-33285 None:intergenic 30.0%
AGTTAGGGTTATTCAAAAAG+AGG - tig0020520:33272-33291 None:intergenic 30.0%
TAGAGAAAACCCTAGTATTA+GGG - tig0020520:33323-33342 None:intergenic 30.0%
ATAGAGAAAACCCTAGTATT+AGG - tig0020520:33324-33343 None:intergenic 30.0%
ACAAATTGCACACAATAACT+AGG - tig0020520:33605-33624 None:intergenic 30.0%
ATAAGCTGATTATCCAAACA+GGG - tig0020520:33651-33670 None:intergenic 30.0%
TAAGCGCATATCATGATAAA+TGG - tig0020520:33692-33711 None:intergenic 30.0%
GCTGTTTATGTATGCTATAT+TGG + tig0020520:33775-33794 Msa1382540:intron 30.0%
! AAAACAATTCAGCGTTTTGT+GGG - tig0020520:33854-33873 None:intergenic 30.0%
GCTGTTTATGTATGCTATAT+TGG + tig0020520:33775-33794 Msa1382540:intron 30.0%
!! TCAACTAACGTAAGTTTTGT+GGG - tig0020520:33967-33986 None:intergenic 30.0%
! ATCAACTAACGTAAGTTTTG+TGG - tig0020520:33968-33987 None:intergenic 30.0%
! AGTGTTTTCATTAGCTATCT+TGG + tig0020520:34020-34039 Msa1382540:intron 30.0%
!! GAATATATTTTTATCTGCCC+CGG - tig0020520:34352-34371 None:intergenic 30.0%
GGGCAGATAAAAATATATTC+TGG + tig0020520:34352-34371 Msa1382540:CDS 30.0%
! ATCAATTGATGTTGATAAGG+CGG + tig0020520:34408-34427 Msa1382540:CDS 30.0%
CATGTAAATACATATTCAGG+GGG - tig0020520:34547-34566 None:intergenic 30.0%
AGGAATTCAATTGTTTGGTT+TGG + tig0020520:34583-34602 Msa1382540:intron 30.0%
! TTGGTCAAAGTGTTAATCAA+AGG - tig0020520:34634-34653 None:intergenic 30.0%
CAAATCATCAACGTTTAGAT+TGG - tig0020520:34653-34672 None:intergenic 30.0%
!! CAATCTAAACGTTGATGATT+TGG + tig0020520:34651-34670 Msa1382540:intron 30.0%
!! AAACGTTGATGATTTGGATT+TGG + tig0020520:34657-34676 Msa1382540:intron 30.0%
TAAGTATAAAACGTCAACAC+AGG - tig0020520:34709-34728 None:intergenic 30.0%
AAATTTACTCGGAGTATAGT+AGG - tig0020520:34909-34928 None:intergenic 30.0%
CACTCAAAATACAAACTGAA+TGG - tig0020520:35050-35069 None:intergenic 30.0%
TCCTTATAAAAAGAAACACC+GGG + tig0020520:35098-35117 Msa1382540:intron 30.0%
AAAGTGAGAAGTTGTTAAGA+TGG + tig0020520:35245-35264 Msa1382540:intron 30.0%
AAGTTGTTAAGATGGAAATG+TGG + tig0020520:35253-35272 Msa1382540:intron 30.0%
AGTTGTTAAGATGGAAATGT+GGG + tig0020520:35254-35273 Msa1382540:intron 30.0%
!!! AAATGTGGGTTCTTTTTTTC+AGG + tig0020520:35268-35287 Msa1382540:intron 30.0%
!!! AATGTGGGTTCTTTTTTTCA+GGG + tig0020520:35269-35288 Msa1382540:intron 30.0%
TCAAAAAGATCCACCATAAA+GGG - tig0020520:35373-35392 None:intergenic 30.0%
ATCAAAAAGATCCACCATAA+AGG - tig0020520:35374-35393 None:intergenic 30.0%
!!! TTTATGGTGGATCTTTTTGA+TGG + tig0020520:35373-35392 Msa1382540:intron 30.0%
TTTCATTTCAGGAAATATGC+TGG + tig0020520:35454-35473 Msa1382540:intron 30.0%
ATCTCAGAAAGATTCTTTGA+TGG + tig0020520:35779-35798 Msa1382540:intron 30.0%
CCGTGATAAAATAATGTCTA+TGG + tig0020520:35958-35977 Msa1382540:CDS 30.0%
TGTTGTACAATACATTACCT+TGG - tig0020520:36046-36065 None:intergenic 30.0%
! AAATTTGCTTTATTGTGCAG+AGG + tig0020520:36153-36172 Msa1382540:intron 30.0%
AACGATTTCAAAATCCAGTA+CGG + tig0020520:36228-36247 Msa1382540:CDS 30.0%
ATCAAGACTAATAATGACGA+AGG - tig0020520:36436-36455 None:intergenic 30.0%
! GATATACATTTTGCTTGCTT+CGG + tig0020520:36546-36565 Msa1382540:intron 30.0%
! GTAGTTTGAAACTGATTATG+TGG + tig0020520:36597-36616 Msa1382540:intron 30.0%
TTATGTGGTTGAAAGTGAAT+TGG + tig0020520:36612-36631 Msa1382540:CDS 30.0%
!!! AAGGGCATATTTTAGTTGAT+TGG + tig0020520:36775-36794 Msa1382540:intron 30.0%
!!! GCATATTTTAGTTGATTGGT+TGG + tig0020520:36779-36798 Msa1382540:intron 30.0%
ATATTGTGGTAAACACTTCA+TGG - tig0020520:36893-36912 None:intergenic 30.0%
AAATTTAGGAGTTGTCAAGA+TGG + tig0020520:36951-36970 Msa1382540:CDS 30.0%
ATCAACCAGAAACTAACATT+TGG - tig0020520:37118-37137 None:intergenic 30.0%
ATAGTCAATCTAGTAGGAAA+TGG - tig0020520:37184-37203 None:intergenic 30.0%
! CTTTATTCATGAGTAGCTTT+TGG + tig0020520:37615-37634 Msa1382540:intron 30.0%
! GTCTACTTACATTTCAGTTT+TGG + tig0020520:37746-37765 Msa1382540:intron 30.0%
AATTGGTGTAAAATGTCTAC+AGG + tig0020520:37961-37980 Msa1382540:intron 30.0%
ACCTCTACTCTTTAAATCTT+TGG + tig0020520:38117-38136 Msa1382540:intron 30.0%
ACCAAAGATTTAAAGAGTAG+AGG - tig0020520:38121-38140 None:intergenic 30.0%
GAAGAAACAGAAGAAGAAAA+AGG + tig0020520:38269-38288 Msa1382540:CDS 30.0%
! TTTCATGTTCTTTTCTCAGA+TGG + tig0020520:38323-38342 Msa1382540:CDS 30.0%
GTACATACATATTAGTGATG+TGG + tig0020520:38368-38387 Msa1382540:intron 30.0%
GAAAAATGGAAAAATCTGTC+GGG + tig0020520:38495-38514 Msa1382540:CDS 30.0%
ATGGAACTGCAATGAAATAA+TGG - tig0020520:38533-38552 None:intergenic 30.0%
ATGCAAAGAAACAGAAAACT+TGG - tig0020520:38608-38627 None:intergenic 30.0%
!! GTAACGCTTTTTATCTTCTT+GGG - tig0020520:38674-38693 None:intergenic 30.0%
!! TGTAACGCTTTTTATCTTCT+TGG - tig0020520:38675-38694 None:intergenic 30.0%
!! AGAAGATAAAAAGCGTTACA+AGG + tig0020520:38675-38694 Msa1382540:CDS 30.0%
CGGGAATACCATTAATATTA+AGG - tig0020520:38780-38799 None:intergenic 30.0%
GTTCTTATCAAGTATCTGAT+CGG + tig0020520:39090-39109 Msa1382540:three_prime_UTR 30.0%
ATATCAAGTATCCCTTATCA+AGG + tig0020520:39160-39179 Msa1382540:three_prime_UTR 30.0%
ATGCAATACACCAAAATTGT+GGG + tig0020520:39192-39211 Msa1382540:three_prime_UTR 30.0%
TAAGAAGGGGAAAAAAGATT+TGG - tig0020520:39287-39306 None:intergenic 30.0%
TGAGGAAAGAAGATCGAAAA+TGG - tig0020520:33235-33254 None:intergenic 35.0%
TCAAAAAGAGGAAATGGTGA+AGG - tig0020520:33260-33279 None:intergenic 35.0%
! ACAATAACTAGGTTTGAAGC+TGG - tig0020520:33594-33613 None:intergenic 35.0%
GATAAGCTGATTATCCAAAC+AGG - tig0020520:33652-33671 None:intergenic 35.0%
! GAAAACAATTCAGCGTTTTG+TGG - tig0020520:33855-33874 None:intergenic 35.0%
TCATTAGCTGTTATGTGTCA+AGG + tig0020520:34180-34199 Msa1382540:intron 35.0%
! AGGAATTTTATGGAAGAGAC+AGG + tig0020520:34375-34394 Msa1382540:CDS 35.0%
! GGAATTTTATGGAAGAGACA+GGG + tig0020520:34376-34395 Msa1382540:CDS 35.0%
! TTGGTGTTCAGATCAAAGAT+GGG + tig0020520:34476-34495 Msa1382540:CDS 35.0%
TAAATACATATTCAGGGGGA+CGG - tig0020520:34543-34562 None:intergenic 35.0%
!! TTCAATTGTTTGGTTTGGCT+TGG + tig0020520:34588-34607 Msa1382540:intron 35.0%
AGTTTCTTCCAAAACACCTT+CGG + tig0020520:34755-34774 Msa1382540:CDS 35.0%
AGAAGCAACTTTCTGTTACT+GGG + tig0020520:34792-34811 Msa1382540:CDS 35.0%
! TACCCTGAATTTTACAAAGG+CGG - tig0020520:35075-35094 None:intergenic 35.0%
TGATGTAACAACCAGATTGA+AGG - tig0020520:35214-35233 None:intergenic 35.0%
TTCATTCATGCTTTCTTCTC+TGG + tig0020520:35328-35347 Msa1382540:intron 35.0%
AAATGCAGTCTTTCCCTTTA+TGG + tig0020520:35357-35376 Msa1382540:intron 35.0%
!! CTGACTTGACTGCTTTTATA+CGG + tig0020520:35398-35417 Msa1382540:intron 35.0%
! TTTCCCTTGAAGGTTTGTTT+GGG - tig0020520:35531-35550 None:intergenic 35.0%
!! TTTTCCCTTGAAGGTTTGTT+TGG - tig0020520:35532-35551 None:intergenic 35.0%
!! TCACATCATTTTTCCCTTGA+AGG - tig0020520:35541-35560 None:intergenic 35.0%
AGGGAAAAATGATGTGATGT+TGG + tig0020520:35544-35563 Msa1382540:CDS 35.0%
ATACTATTCAAGCCCAAGTT+TGG - tig0020520:35691-35710 None:intergenic 35.0%
TTGGGCTTGAATAGTATTGT+AGG + tig0020520:35694-35713 Msa1382540:intron 35.0%
TATTGTAGGCTGCAGTTAAT+AGG + tig0020520:35708-35727 Msa1382540:intron 35.0%
! TGCAGTTAATAGGCTCATTT+TGG + tig0020520:35718-35737 Msa1382540:intron 35.0%
ATCTTCATCACCAACAAACT+GGG - tig0020520:35835-35854 None:intergenic 35.0%
ATAATGTCTATGGCTGATGT+TGG + tig0020520:35968-35987 Msa1382540:CDS 35.0%
AGATGCTGTTGTTACATTTG+AGG + tig0020520:36003-36022 Msa1382540:CDS 35.0%
GATGCTGTTGTTACATTTGA+GGG + tig0020520:36004-36023 Msa1382540:CDS 35.0%
! CAATACATTACCTTGGTGTA+AGG - tig0020520:36039-36058 None:intergenic 35.0%
!!! TCGCCTATTTTTACTTCCTA+AGG + tig0020520:36260-36279 Msa1382540:CDS 35.0%
AGGATTAGGAGATAAACCTT+AGG - tig0020520:36279-36298 None:intergenic 35.0%
! CTAATAATGACGAAGGTATG+CGG - tig0020520:36429-36448 None:intergenic 35.0%
!! TTAGTCTTGATCCTCCTATT+CGG + tig0020520:36445-36464 Msa1382540:CDS 35.0%
! CAGGTAATGTTTTACTTCGT+TGG + tig0020520:36501-36520 Msa1382540:intron 35.0%
CAGTTTCAAACTACACAGAA+AGG - tig0020520:36591-36610 None:intergenic 35.0%
CTCAAAGTACAAAGACAAGT+TGG + tig0020520:36657-36676 Msa1382540:CDS 35.0%
!! AGCTGCTTTGGAAATGAAAA+AGG + tig0020520:36756-36775 Msa1382540:intron 35.0%
!! GCTGCTTTGGAAATGAAAAA+GGG + tig0020520:36757-36776 Msa1382540:intron 35.0%
TTACCAAGCCTGGAAAATTT+AGG + tig0020520:36937-36956 Msa1382540:CDS 35.0%
! TGACAACTCCTAAATTTTCC+AGG - tig0020520:36948-36967 None:intergenic 35.0%
! TCATCTTTGAAAGCTGAAGA+TGG + tig0020520:36987-37006 Msa1382540:CDS 35.0%
AAAGAAGAAGCTCTTCTCAA+GGG - tig0020520:37024-37043 None:intergenic 35.0%
TTCCTACTAGATTGACTATG+TGG + tig0020520:37185-37204 Msa1382540:intron 35.0%
TTCCACATAGTCAATCTAGT+AGG - tig0020520:37190-37209 None:intergenic 35.0%
CAGATTTGAGTCTGATAAGA+AGG - tig0020520:37257-37276 None:intergenic 35.0%
CAAGTAGTCAAGTACAGATT+AGG - tig0020520:37576-37595 None:intergenic 35.0%
GCTACTCATGAATAAAGAAG+AGG - tig0020520:37612-37631 None:intergenic 35.0%
! TTCAGATTTTGTTCTCGACA+AGG + tig0020520:37985-38004 Msa1382540:CDS 35.0%
AGATTTAAAGAGTAGAGGTG+AGG - tig0020520:38116-38135 None:intergenic 35.0%
! TGGTCATCATTAAGGTGTTA+CGG - tig0020520:38146-38165 None:intergenic 35.0%
TTAGAAGGCAAATCCTTCTT+TGG - tig0020520:38195-38214 None:intergenic 35.0%
AAAGAAGGATTTGCCTTCTA+AGG + tig0020520:38194-38213 Msa1382540:CDS 35.0%
TTAGAAGTAGATGCCTTAGA+AGG - tig0020520:38210-38229 None:intergenic 35.0%
!! GAAGAGTACTTGGAGAAAAA+TGG + tig0020520:38481-38500 Msa1382540:CDS 35.0%
TTTGCATGTTCAATACACAG+CGG + tig0020520:38621-38640 Msa1382540:intron 35.0%
! CTTTTTATCTTCTTGGGCTT+TGG - tig0020520:38668-38687 None:intergenic 35.0%
! GAATCAATATTCATGGGTTG+AGG - tig0020520:38727-38746 None:intergenic 35.0%
!! CAACCCATGAATATTGATTC+AGG + tig0020520:38727-38746 Msa1382540:CDS 35.0%
!! TGTCGATTTACCGTTACAAT+AGG - tig0020520:38888-38907 None:intergenic 35.0%
! GGTAAATCGACAGAGTTTTA+TGG + tig0020520:38896-38915 Msa1382540:three_prime_UTR 35.0%
AAGTATCCCTTATCAAGGTA+TGG + tig0020520:39165-39184 Msa1382540:three_prime_UTR 35.0%
CATGCAATACACCAAAATTG+TGG + tig0020520:39191-39210 Msa1382540:three_prime_UTR 35.0%
TGGTAAGGACACTTGATAAA+GGG - tig0020520:39267-39286 None:intergenic 35.0%
TTGGTAAGGACACTTGATAA+AGG - tig0020520:39268-39287 None:intergenic 35.0%
! AGGGGAAAAAAGATTTGGTA+AGG - tig0020520:39282-39301 None:intergenic 35.0%
CTCTTCAACAACATTACCCT+CGG + tig0020520:33150-33169 Msa1382540:CDS 40.0%
AAACAGGGCCTAATACTAGA+TGG - tig0020520:33636-33655 None:intergenic 40.0%
ATCTAGTATTAGGCCCTGTT+TGG + tig0020520:33635-33654 Msa1382540:intron 40.0%
! TGAAACACTCAGAGCTTGTT+TGG - tig0020520:34163-34182 None:intergenic 40.0%
!! ATTATTGGTGCTGCAGAATC+CGG + tig0020520:34330-34349 Msa1382540:intron 40.0%
! ATTTTATGGAAGAGACAGGG+AGG + tig0020520:34379-34398 Msa1382540:CDS 40.0%
! TGTTGATAAGGCGGACATAA+CGG + tig0020520:34417-34436 Msa1382540:CDS 40.0%
GTTCCAAAGACGAATCAACT+TGG + tig0020520:34457-34476 Msa1382540:CDS 40.0%
!! ACACCAAGTTGATTCGTCTT+TGG - tig0020520:34463-34482 None:intergenic 40.0%
!! CTTGGTGTTCAGATCAAAGA+TGG + tig0020520:34475-34494 Msa1382540:CDS 40.0%
GGGTTGTTCTACAAATTCAC+TGG + tig0020520:34496-34515 Msa1382540:CDS 40.0%
!! TTGTTTGGTTTGGCTTGGTT+TGG + tig0020520:34593-34612 Msa1382540:intron 40.0%
GAGAAGCAACTTTCTGTTAC+TGG + tig0020520:34791-34810 Msa1382540:CDS 40.0%
! TGGGGAGAAGTTGATCTAAA+CGG + tig0020520:34821-34840 Msa1382540:CDS 40.0%
! GAGAAGTTGATCTAAACGGT+TGG + tig0020520:34825-34844 Msa1382540:intron 40.0%
CACCGCCTTTGTAAAATTCA+GGG + tig0020520:35070-35089 Msa1382540:intron 40.0%
! GCCCGGTGTTTCTTTTTATA+AGG - tig0020520:35102-35121 None:intergenic 40.0%
AACAACCAGATTGAAGGTAG+TGG - tig0020520:35208-35227 None:intergenic 40.0%
!!! TGGGTTCTTTTTTTCAGGGT+GGG + tig0020520:35273-35292 Msa1382540:intron 40.0%
TTATACGGCTATACTACCAG+TGG + tig0020520:35413-35432 Msa1382540:intron 40.0%
AGAAACATAAGGACATCCAC+TGG - tig0020520:35432-35451 None:intergenic 40.0%
!! AGGAAATATGCTGGCTTTCA+TGG + tig0020520:35463-35482 Msa1382540:intron 40.0%
!! AATATGCTGGCTTTCATGGT+TGG + tig0020520:35467-35486 Msa1382540:CDS 40.0%
! TGGTTCAAAGCAAGCTTTTG+AGG + tig0020520:35487-35506 Msa1382540:CDS 40.0%
TCTCCCAAACAAACCTTCAA+GGG + tig0020520:35525-35544 Msa1382540:CDS 40.0%
AAACCTTCCTCATCCAAACT+TGG + tig0020520:35675-35694 Msa1382540:intron 40.0%
AACCTTCCTCATCCAAACTT+GGG + tig0020520:35676-35695 Msa1382540:intron 40.0%
!! ACAAACTGGGTATTGGAACT+TGG - tig0020520:35822-35841 None:intergenic 40.0%
AGTTCCAATACCCAGTTTGT+TGG + tig0020520:35822-35841 Msa1382540:CDS 40.0%
ATCACCAACAAACTGGGTAT+TGG - tig0020520:35829-35848 None:intergenic 40.0%
GATCTTCATCACCAACAAAC+TGG - tig0020520:35836-35855 None:intergenic 40.0%
GTATTGCAATCCTTACACCA+AGG + tig0020520:36026-36045 Msa1382540:CDS 40.0%
!!! TTGTCATTTTTGCGGCTTCA+GGG + tig0020520:36198-36217 Msa1382540:CDS 40.0%
TGACAGCTTATCATGTCTGT+TGG + tig0020520:36378-36397 Msa1382540:intron 40.0%
TTGATCCTCCTATTCGGAAA+GGG + tig0020520:36451-36470 Msa1382540:CDS 40.0%
TTACCTGCATCACGATATGA+GGG - tig0020520:36488-36507 None:intergenic 40.0%
ATTACCTGCATCACGATATG+AGG - tig0020520:36489-36508 None:intergenic 40.0%
! GAAAGGAGCACAACATTGTT+AGG - tig0020520:36574-36593 None:intergenic 40.0%
! GATTGGTTGGTGTGAGAATT+TGG + tig0020520:36792-36811 Msa1382540:intron 40.0%
! TGTGAGAATTTGGTAACTCG+TGG + tig0020520:36802-36821 Msa1382540:intron 40.0%
! GTGAGAATTTGGTAACTCGT+GGG + tig0020520:36803-36822 Msa1382540:intron 40.0%
GTGTTTACCACAATATTGCG+TGG + tig0020520:36897-36916 Msa1382540:CDS 40.0%
! ACAATATTGCGTGGTTTGTC+CGG + tig0020520:36906-36925 Msa1382540:CDS 40.0%
! ACTCCTAAATTTTCCAGGCT+TGG - tig0020520:36943-36962 None:intergenic 40.0%
AAGAAGAAGCTCTTCTCAAG+GGG - tig0020520:37023-37042 None:intergenic 40.0%
GAAAGAAGAAGCTCTTCTCA+AGG - tig0020520:37025-37044 None:intergenic 40.0%
TGGTTATCAGCAAAAGCAAC+TGG - tig0020520:37090-37109 None:intergenic 40.0%
ATCATCATTCTCAAGCACCT+TGG - tig0020520:37481-37500 None:intergenic 40.0%
AAAGGGATAGATGGACAAAC+AGG - tig0020520:37817-37836 None:intergenic 40.0%
GACAAACTGAAAGGGATAGA+TGG - tig0020520:37826-37845 None:intergenic 40.0%
! GAGAGCATGACAAACTGAAA+GGG - tig0020520:37834-37853 None:intergenic 40.0%
! AGAGAGCATGACAAACTGAA+AGG - tig0020520:37835-37854 None:intergenic 40.0%
CTCTGTATTGCTTACTGTTG+TGG + tig0020520:37851-37870 Msa1382540:intron 40.0%
TGTCATATGCGTATGTCTTG+TGG + tig0020520:37883-37902 Msa1382540:intron 40.0%
GTCATATGCGTATGTCTTGT+GGG + tig0020520:37884-37903 Msa1382540:intron 40.0%
TTTGTTCTCGACAAGGATGA+TGG + tig0020520:37992-38011 Msa1382540:CDS 40.0%
! CTGGAAGTTGGTCATCATTA+AGG - tig0020520:38154-38173 None:intergenic 40.0%
! ATCCTTCTTTGGTTCCTTCT+TGG - tig0020520:38184-38203 None:intergenic 40.0%
! TCAAAAGATGCTGATGACGA+AGG + tig0020520:38237-38256 Msa1382540:CDS 40.0%
! CTTTTCTCAGATGGAAAGAG+AGG + tig0020520:38332-38351 Msa1382540:CDS 40.0%
ACGTCCGTAAATGAAATTCC+AGG - tig0020520:38459-38478 None:intergenic 40.0%
TGGAATTTCATTTACGGACG+TGG + tig0020520:38458-38477 Msa1382540:CDS 40.0%
GGAATTTCATTTACGGACGT+GGG + tig0020520:38459-38478 Msa1382540:CDS 40.0%
ATGGAAAAATCTGTCGGGTA+TGG + tig0020520:38500-38519 Msa1382540:CDS 40.0%
TGGTCACAAATGACACTAGA+TGG - tig0020520:38552-38571 None:intergenic 40.0%
AATGAATCTGACAGTGCCTA+AGG + tig0020520:38751-38770 Msa1382540:CDS 40.0%
TAATGGTATTCCCGATTGCT+TGG + tig0020520:38786-38805 Msa1382540:three_prime_UTR 40.0%
TAAAACTGCAGCCAAGCAAT+CGG - tig0020520:38800-38819 None:intergenic 40.0%
GGTGGTATCTCCTATTGTAA+CGG + tig0020520:38875-38894 Msa1382540:three_prime_UTR 40.0%
TTGTTTGAATGGCTTGAGGA+AGG + tig0020520:38980-38999 Msa1382540:three_prime_UTR 40.0%
ACTTGATAAGAACCACTAGC+AGG - tig0020520:39083-39102 None:intergenic 40.0%
ATGCAGCCATACCTTGATAA+GGG - tig0020520:39174-39193 None:intergenic 40.0%
! AGAAAGAGGTCCCACAATTT+TGG - tig0020520:39205-39224 None:intergenic 40.0%
GGTAAGGACACTTGATAAAG+GGG - tig0020520:39266-39285 None:intergenic 40.0%
TTCAACAACATTACCCTCGG+CGG + tig0020520:33153-33172 Msa1382540:CDS 45.0%
AGAGAGAGAGAGAGAGCTTA+CGG - tig0020520:33190-33209 None:intergenic 45.0%
GAGGAAATGGTGAAGGTTTG+AGG - tig0020520:33253-33272 None:intergenic 45.0%
! CACTCAGAGCTTGTTTGGAT+TGG - tig0020520:34158-34177 None:intergenic 45.0%
!! TTATTGGTGCTGCAGAATCC+GGG + tig0020520:34331-34350 Msa1382540:intron 45.0%
! GTTGATAAGGCGGACATAAC+GGG + tig0020520:34418-34437 Msa1382540:CDS 45.0%
!! ATTCACTGGTTTCCGTGATC+AGG + tig0020520:34510-34529 Msa1382540:CDS 45.0%
!!! CAGTTACTCCGAAGGTGTTT+TGG - tig0020520:34766-34785 None:intergenic 45.0%
AACACCTTCGGAGTAACTGT+TGG + tig0020520:34767-34786 Msa1382540:CDS 45.0%
ACACCTTCGGAGTAACTGTT+GGG + tig0020520:34768-34787 Msa1382540:CDS 45.0%
TTTCTGTTACTGGGCGCAAT+TGG + tig0020520:34801-34820 Msa1382540:CDS 45.0%
TTCTGTTACTGGGCGCAATT+GGG + tig0020520:34802-34821 Msa1382540:CDS 45.0%
ATGGCAGCATCATGAAGACA+TGG + tig0020520:34966-34985 Msa1382540:intron 45.0%
GCACCGCCTTTGTAAAATTC+AGG + tig0020520:35069-35088 Msa1382540:intron 45.0%
AAAAACGGCAGATAACTGCC+CGG - tig0020520:35119-35138 None:intergenic 45.0%
AAGCACCACTACCTTCAATC+TGG + tig0020520:35200-35219 Msa1382540:intron 45.0%
!!! GTGGGTTCTTTTTTTCAGGG+TGG + tig0020520:35272-35291 Msa1382540:intron 45.0%
!!! GGGTTCTTTTTTTCAGGGTG+GGG + tig0020520:35274-35293 Msa1382540:intron 45.0%
!!! TCTTTTTTTCAGGGTGGGGA+TGG + tig0020520:35278-35297 Msa1382540:intron 45.0%
!!! CTTTTTTTCAGGGTGGGGAT+GGG + tig0020520:35279-35298 Msa1382540:intron 45.0%
!!! TTTTTTTCAGGGTGGGGATG+GGG + tig0020520:35280-35299 Msa1382540:intron 45.0%
! ATGGGGTTTGCTTCTCAAAC+AGG + tig0020520:35297-35316 Msa1382540:intron 45.0%
TGCAGTCTTTCCCTTTATGG+TGG + tig0020520:35360-35379 Msa1382540:intron 45.0%
GTCTCCCAAACAAACCTTCA+AGG + tig0020520:35524-35543 Msa1382540:CDS 45.0%
TGTGATGTTGGAGTTTCACG+TGG + tig0020520:35556-35575 Msa1382540:CDS 45.0%
TTTCACGTGGATGACACAAC+TGG + tig0020520:35569-35588 Msa1382540:CDS 45.0%
TGACACAACTGGAGCAAATG+AGG + tig0020520:35580-35599 Msa1382540:CDS 45.0%
! AGTTTGGAACAACTTGCAGC+TGG + tig0020520:35644-35663 Msa1382540:intron 45.0%
TTCAAGCCCAAGTTTGGATG+AGG - tig0020520:35685-35704 None:intergenic 45.0%
!! GGGTATTGGAACTTGGTACA+TGG - tig0020520:35815-35834 None:intergenic 45.0%
GACACAATCGAACAGAAGCA+TGG - tig0020520:36107-36126 None:intergenic 45.0%
!!! CTTGTCATTTTTGCGGCTTC+AGG + tig0020520:36197-36216 Msa1382540:CDS 45.0%
CTTGATCCTCCTATTCGGAA+AGG + tig0020520:36450-36469 Msa1382540:CDS 45.0%
AAAGTCTGCCCTTTCCGAAT+AGG - tig0020520:36462-36481 None:intergenic 45.0%
! CAAGTTGGAGCTGTCTTACA+AGG + tig0020520:36672-36691 Msa1382540:CDS 45.0%
CATTTCCAAAGCAGCTCTTG+AGG - tig0020520:36752-36771 None:intergenic 45.0%
GGACAAACCACGCAATATTG+TGG - tig0020520:36907-36926 None:intergenic 45.0%
TCAAGCCCTTAGAACTGCAT+GGG - tig0020520:37416-37435 None:intergenic 45.0%
TTCAAGCCCTTAGAACTGCA+TGG - tig0020520:37417-37436 None:intergenic 45.0%
ATATGCGTATGTCTTGTGGG+AGG + tig0020520:37887-37906 Msa1382540:intron 45.0%
GGTTCTCCTACTGATGATTC+TGG + tig0020520:38016-38035 Msa1382540:CDS 45.0%
TCTGCACCAGAATCATCAGT+AGG - tig0020520:38025-38044 None:intergenic 45.0%
! TTCTTTGGTTCCTTCTTGGC+AGG - tig0020520:38180-38199 None:intergenic 45.0%
TGCCAAGAAGGAACCAAAGA+AGG + tig0020520:38179-38198 Msa1382540:CDS 45.0%
! AAAGATGCTGATGACGAAGG+AGG + tig0020520:38240-38259 Msa1382540:CDS 45.0%
AGGATCCAAATGCACCTAAG+AGG + tig0020520:38289-38308 Msa1382540:CDS 45.0%
GGATCCAAATGCACCTAAGA+GGG + tig0020520:38290-38309 Msa1382540:CDS 45.0%
AAAAATCTGTCGGGTATGGC+TGG + tig0020520:38504-38523 Msa1382540:CDS 45.0%
CGTTACAAGGATGAGATGAG+TGG + tig0020520:38688-38707 Msa1382540:CDS 45.0%
AAAACTGCAGCCAAGCAATC+GGG - tig0020520:38799-38818 None:intergenic 45.0%
GTTTGAGTGTTCTATGTCCC+CGG + tig0020520:38941-38960 Msa1382540:three_prime_UTR 45.0%
TTTGAGTGTTCTATGTCCCC+GGG + tig0020520:38942-38961 Msa1382540:three_prime_UTR 45.0%
!! TAACGGGCTGCTTGTTTGAA+TGG + tig0020520:38969-38988 Msa1382540:three_prime_UTR 45.0%
CTGCTTGTTTGAATGGCTTG+AGG + tig0020520:38976-38995 Msa1382540:three_prime_UTR 45.0%
! ACATACTGGTTACCTGCTAG+TGG + tig0020520:39068-39087 Msa1382540:three_prime_UTR 45.0%
CATGCAGCCATACCTTGATA+AGG - tig0020520:39175-39194 None:intergenic 45.0%
CACTTGATAAAGGGGCAACA+TGG - tig0020520:39258-39277 None:intergenic 45.0%
!! AATTACAATAATAAAAATTA+GGG - tig0020520:33374-33393 None:intergenic 5.0%
!! TAATTACAATAATAAAAATT+AGG - tig0020520:33375-33394 None:intergenic 5.0%
TGTCTCTGCACACTGAGAGA+GGG - tig0020520:33070-33089 None:intergenic 50.0%
TTGTCTCTGCACACTGAGAG+AGG - tig0020520:33071-33090 None:intergenic 50.0%
TCTCTTTCTCGCCACCATGA+CGG + tig0020520:33119-33138 Msa1382540:exon 50.0%
!! TATTGGTGCTGCAGAATCCG+GGG + tig0020520:34332-34351 Msa1382540:intron 50.0%
TTATGGAAGAGACAGGGAGG+TGG + tig0020520:34382-34401 Msa1382540:CDS 50.0%
AACGGGCGTAACATGGATGA+AGG + tig0020520:34435-34454 Msa1382540:CDS 50.0%
GACGGAGAACTACCTGATCA+CGG - tig0020520:34525-34544 None:intergenic 50.0%
CACCTTCGGAGTAACTGTTG+GGG + tig0020520:34769-34788 Msa1382540:CDS 50.0%
TCTGTTACTGGGCGCAATTG+GGG + tig0020520:34803-34822 Msa1382540:CDS 50.0%
AGCCCAAGTTTGGATGAGGA+AGG - tig0020520:35681-35700 None:intergenic 50.0%
ACAAACTCACCTGAGCAGGA+GGG - tig0020520:35860-35879 None:intergenic 50.0%
ACAGACAAACTCACCTGAGC+AGG - tig0020520:35864-35883 None:intergenic 50.0%
TCTATGGCTGATGTTGGTGC+TGG + tig0020520:35974-35993 Msa1382540:CDS 50.0%
! ATTTTTGCGGCTTCAGGGAC+AGG + tig0020520:36203-36222 Msa1382540:CDS 50.0%
CAAAATCCAGTACGGCAGTG+TGG + tig0020520:36236-36255 Msa1382540:CDS 50.0%
GTACCCTCATATCGTGATGC+AGG + tig0020520:36482-36501 Msa1382540:CDS 50.0%
CTCTTGAGGAGCAGTATCTC+AGG - tig0020520:36738-36757 None:intergenic 50.0%
! ATATTGCGTGGTTTGTCCGG+AGG + tig0020520:36909-36928 Msa1382540:CDS 50.0%
! AGGCTTGGTAACTTTGCCTC+CGG - tig0020520:36928-36947 None:intergenic 50.0%
GAATTTGAGCGACATGCTGC+TGG + tig0020520:37207-37226 Msa1382540:CDS 50.0%
! TCCTGCCCATGCAGTTCTAA+GGG + tig0020520:37408-37427 Msa1382540:intron 50.0%
TTTCTGATGCGCTCGAGATG+TGG - tig0020520:37519-37538 None:intergenic 50.0%
GAGCGCATCAGAAATGAAGC+TGG + tig0020520:37525-37544 Msa1382540:CDS 50.0%
CGCATCAGAAATGAAGCTGG+TGG + tig0020520:37528-37547 Msa1382540:CDS 50.0%
TGGTGGAGATGAAAGTGACG+AGG + tig0020520:37545-37564 Msa1382540:CDS 50.0%
TGGAGATGAAAGTGACGAGG+AGG + tig0020520:37548-37567 Msa1382540:CDS 50.0%
! GTTCTCGACAAGGATGATGG+AGG + tig0020520:37995-38014 Msa1382540:CDS 50.0%
GACTCTGATGCTAGCCAAAG+TGG + tig0020520:38046-38065 Msa1382540:CDS 50.0%
TCTGATGCTAGCCAAAGTGG+TGG + tig0020520:38049-38068 Msa1382540:CDS 50.0%
! CTTGGCAGGTTTCTGGAAGT+TGG - tig0020520:38166-38185 None:intergenic 50.0%
CTTCCAGAAACCTGCCAAGA+AGG + tig0020520:38167-38186 Msa1382540:intron 50.0%
GTTCCTTCTTGGCAGGTTTC+TGG - tig0020520:38173-38192 None:intergenic 50.0%
AGTGCCCTCTTAGGTGCATT+TGG - tig0020520:38297-38316 None:intergenic 50.0%
AAACCAGACAGTGCCCTCTT+AGG - tig0020520:38306-38325 None:intergenic 50.0%
GCATGTTCAATACACAGCGG+AGG + tig0020520:38624-38643 Msa1382540:intron 50.0%
TCAATACACAGCGGAGGAGA+AGG + tig0020520:38630-38649 Msa1382540:intron 50.0%
GGAGGAGAAGGAACCTTATG+AGG + tig0020520:38642-38661 Msa1382540:CDS 50.0%
! TCTTGGGCTTTGGCCTCATA+AGG - tig0020520:38658-38677 None:intergenic 50.0%
TTGAGTGTTCTATGTCCCCG+GGG + tig0020520:38943-38962 Msa1382540:three_prime_UTR 50.0%
CTATGTCCCCGGGGTTATAA+CGG + tig0020520:38952-38971 Msa1382540:three_prime_UTR 50.0%
TATGTCCCCGGGGTTATAAC+GGG + tig0020520:38953-38972 Msa1382540:three_prime_UTR 50.0%
TTGAATGGCTTGAGGAAGGC+TGG + tig0020520:38984-39003 Msa1382540:three_prime_UTR 50.0%
GATGAGCAGGGTCTAGAAAG+AGG - tig0020520:39219-39238 None:intergenic 50.0%
CTTTCTAGACCCTGCTCATC+CGG + tig0020520:39219-39238 Msa1382540:three_prime_UTR 50.0%
TTTCTAGACCCTGCTCATCC+GGG + tig0020520:39220-39239 Msa1382540:three_prime_UTR 50.0%
ACATGGTGCACTAAAGCTCC+CGG - tig0020520:39241-39260 None:intergenic 50.0%
! TTTCTCGCCACCATGACGGA+CGG + tig0020520:33123-33142 Msa1382540:exon 55.0%
GAAGAGATGACCGTCCGTCA+TGG - tig0020520:33136-33155 None:intergenic 55.0%
!! CGGACATAACGGGCGTAACA+TGG + tig0020520:34428-34447 Msa1382540:CDS 55.0%
CTCCCCAACAGTTACTCCGA+AGG - tig0020520:34774-34793 None:intergenic 55.0%
GACAAACTCACCTGAGCAGG+AGG - tig0020520:35861-35880 None:intergenic 55.0%
!! ATGGCTGATGTTGGTGCTGG+AGG + tig0020520:35977-35996 Msa1382540:CDS 55.0%
GTCTGCCCTTTCCGAATAGG+AGG - tig0020520:36459-36478 None:intergenic 55.0%
CTGCTCCTCAAGAGCTGCTT+TGG + tig0020520:36744-36763 Msa1382540:intron 55.0%
GGAGGCAAAGTTACCAAGCC+TGG + tig0020520:36927-36946 Msa1382540:CDS 55.0%
TTTGAGCGACATGCTGCTGG+TGG + tig0020520:37210-37229 Msa1382540:CDS 55.0%
GTCCTGCCCATGCAGTTCTA+AGG + tig0020520:37407-37426 Msa1382540:intron 55.0%
GCTGATGCCCAACCAACTGT+TGG + tig0020520:37450-37469 Msa1382540:CDS 55.0%
TGCCCAACCAACTGTTGGTG+TGG + tig0020520:37455-37474 Msa1382540:CDS 55.0%
GGCCACACCAACAGTTGGTT+GGG - tig0020520:37460-37479 None:intergenic 55.0%
TGGCCACACCAACAGTTGGT+TGG - tig0020520:37461-37480 None:intergenic 55.0%
ACCAACTGTTGGTGTGGCCA+AGG + tig0020520:37461-37480 Msa1382540:CDS 55.0%
ACCTTGGCCACACCAACAGT+TGG - tig0020520:37465-37484 None:intergenic 55.0%
CCTCTGTCTCACCACCACTT+TGG - tig0020520:38063-38082 None:intergenic 55.0%
! CCAAAGTGGTGGTGAGACAG+AGG + tig0020520:38060-38079 Msa1382540:CDS 55.0%
!! ACGGACGTGGGAAGAGTACT+TGG + tig0020520:38471-38490 Msa1382540:CDS 55.0%
AAGCAGCCCGTTATAACCCC+GGG - tig0020520:38962-38981 None:intergenic 55.0%
CAAGCAGCCCGTTATAACCC+CGG - tig0020520:38963-38982 None:intergenic 55.0%
AGGAAGGCTGGAGAAGGATG+AGG + tig0020520:38996-39015 Msa1382540:three_prime_UTR 55.0%
CTAAAGCTCCCGGATGAGCA+GGG - tig0020520:39231-39250 None:intergenic 55.0%
ACTAAAGCTCCCGGATGAGC+AGG - tig0020520:39232-39251 None:intergenic 55.0%
GAGATGACCGTCCGTCATGG+TGG - tig0020520:33133-33152 None:intergenic 60.0%
TGAAGATCGCCCTCCTGCTC+AGG + tig0020520:35848-35867 Msa1382540:CDS 60.0%
GCCCTTAGAACTGCATGGGC+AGG - tig0020520:37412-37431 None:intergenic 60.0%
GCGCTCGAGATGTGGATCGA+CGG - tig0020520:37511-37530 None:intergenic 60.0%
GTCTTGTGGGAGGCTGCATG+TGG + tig0020520:37897-37916 Msa1382540:intron 60.0%
!! GCACCTAAGAGGGCACTGTC+TGG + tig0020520:38300-38319 Msa1382540:CDS 60.0%
AGCAGCCCGTTATAACCCCG+GGG - tig0020520:38961-38980 None:intergenic 60.0%
GGCTTGAGGAAGGCTGGAGA+AGG + tig0020520:38990-39009 Msa1382540:three_prime_UTR 60.0%
AACATTACCCTCGGCGGCCG+TGG + tig0020520:33159-33178 Msa1382540:CDS 65.0%
!! GAGAGCTTACGGTGCCGCCA+CGG - tig0020520:33179-33198 None:intergenic 65.0%
GGCGAACCACACTGCCGTAC+TGG - tig0020520:36245-36264 None:intergenic 65.0%
TGTGGGAGGCTGCATGTGGC+AGG + tig0020520:37901-37920 Msa1382540:intron 65.0%
ATTACCCTCGGCGGCCGTGG+CGG + tig0020520:33162-33181 Msa1382540:CDS 70.0%
!! GGTGCCGCCACGGCCGCCGA+GGG - tig0020520:33169-33188 None:intergenic 85.0%
!!! CGGTGCCGCCACGGCCGCCG+AGG - tig0020520:33170-33189 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
tig0020520 gene 33065 39310 33065 ID=Msa1382540;Name=Msa1382540
tig0020520 mRNA 33065 39310 33065 ID=Msa1382540-mRNA-1;Parent=Msa1382540;Name=Msa1382540-mRNA-1;_AED=0.11;_eAED=0.11;_QI=70|0.93|0.93|1|1|1|16|539|646
tig0020520 exon 33065 33188 33065 ID=Msa1382540-mRNA-1:exon:8180;Parent=Msa1382540-mRNA-1
tig0020520 exon 34346 34531 34346 ID=Msa1382540-mRNA-1:exon:8181;Parent=Msa1382540-mRNA-1
tig0020520 exon 34737 34842 34737 ID=Msa1382540-mRNA-1:exon:8182;Parent=Msa1382540-mRNA-1
tig0020520 exon 35465 35601 35465 ID=Msa1382540-mRNA-1:exon:8183;Parent=Msa1382540-mRNA-1
tig0020520 exon 35786 35869 35786 ID=Msa1382540-mRNA-1:exon:8184;Parent=Msa1382540-mRNA-1
tig0020520 exon 35953 36047 35953 ID=Msa1382540-mRNA-1:exon:8185;Parent=Msa1382540-mRNA-1
tig0020520 exon 36173 36281 36173 ID=Msa1382540-mRNA-1:exon:8186;Parent=Msa1382540-mRNA-1
tig0020520 exon 36417 36503 36417 ID=Msa1382540-mRNA-1:exon:8187;Parent=Msa1382540-mRNA-1
tig0020520 exon 36601 36693 36601 ID=Msa1382540-mRNA-1:exon:8188;Parent=Msa1382540-mRNA-1
tig0020520 exon 36882 37079 36882 ID=Msa1382540-mRNA-1:exon:8189;Parent=Msa1382540-mRNA-1
tig0020520 exon 37195 37340 37195 ID=Msa1382540-mRNA-1:exon:8190;Parent=Msa1382540-mRNA-1
tig0020520 exon 37422 37569 37422 ID=Msa1382540-mRNA-1:exon:8191;Parent=Msa1382540-mRNA-1
tig0020520 exon 37983 38081 37983 ID=Msa1382540-mRNA-1:exon:8192;Parent=Msa1382540-mRNA-1
tig0020520 exon 38174 38353 38174 ID=Msa1382540-mRNA-1:exon:8193;Parent=Msa1382540-mRNA-1
tig0020520 exon 38438 38525 38438 ID=Msa1382540-mRNA-1:exon:8194;Parent=Msa1382540-mRNA-1
tig0020520 exon 38641 39310 38641 ID=Msa1382540-mRNA-1:exon:8195;Parent=Msa1382540-mRNA-1
tig0020520 five_prime_UTR 33065 33134 33065 ID=Msa1382540-mRNA-1:five_prime_utr;Parent=Msa1382540-mRNA-1
tig0020520 CDS 33135 33188 33135 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 34346 34531 34346 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 34737 34842 34737 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 35465 35601 35465 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 35786 35869 35786 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 35953 36047 35953 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 36173 36281 36173 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 36417 36503 36417 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 36601 36693 36601 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 36882 37079 36882 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 37195 37340 37195 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 37422 37569 37422 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 37983 38081 37983 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 38174 38353 38174 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 38438 38525 38438 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 CDS 38641 38771 38641 ID=Msa1382540-mRNA-1:cds;Parent=Msa1382540-mRNA-1
tig0020520 three_prime_UTR 38772 39310 38772 ID=Msa1382540-mRNA-1:three_prime_utr;Parent=Msa1382540-mRNA-1
Gene Sequence

>Msa1382540

ATGACGGACGGTCATCTCTTCAACAACATTACCCTCGGCGGCCGTGGCGGCACCAATCCGGGGCAGATAAAAATATATTCTGGAGGAATTTTATGGAAGAGACAGGGAGGTGGCAAATCAATTGATGTTGATAAGGCGGACATAACGGGCGTAACATGGATGAAGGTTCCAAAGACGAATCAACTTGGTGTTCAGATCAAAGATGGGTTGTTCTACAAATTCACTGGTTTCCGTGATCAGGATGTTGTAAGCTTGACAAGTTTCTTCCAAAACACCTTCGGAGTAACTGTTGGGGAGAAGCAACTTTCTGTTACTGGGCGCAATTGGGGAGAAGTTGATCTAAACGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCCCAAACAAACCTTCAAGGGAAAAATGATGTGATGTTGGAGTTTCACGTGGATGACACAACTGGAGCAAATGAGAAAGATTCTTTGATGGAGATGAGTTTCCATGTACCAAGTTCCAATACCCAGTTTGTTGGTGATGAAGATCGCCCTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGAGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAATTACACTTGTCATTTTTGCGGCTTCAGGGACAGGCTAACGATTTCAAAATCCAGTACGGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAGCCGCATACCTTCGTCATTATTAGTCTTGATCCTCCTATTCGGAAAGGGCAGACTTTGTACCCTCATATCGTGATGCAGTTTGAAACTGATTATGTGGTTGAAAGTGAATTGGCAATGAGTGAAGATCTTTATAACTCAAAGTACAAAGACAAGTTGGAGCTGTCTTACAAGGGGCTTATCCATGAAGTGTTTACCACAATATTGCGTGGTTTGTCCGGAGGCAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAGTCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTGCCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAACATGCATTACTTTGACCTTCTTATCAGACTCAAATCTGAGCAAGAGCATCTCTTCCGAAATATTCAGAGAAATGAATACCACAATTTGTATGGTTTTATCAGTTCTAAGGGCTTGAAAATTATGAATTTAGCTGATGCCCAACCAACTGTTGGTGTGGCCAAGGTGCTTGAGAATGATGATGATGATGCCGTCGATCCACATCTCGAGCGCATCAGAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCAGATTTTGTTCTCGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGTGCAGATGACTCTGATGCTAGCCAAAGTGGTGGTGAGACAGAGAAACCTGCCAAGAAGGAACCAAAGAAGGATTTGCCTTCTAAGGCATCTACTTCTAAGAAGAAATCAAAAGATGCTGATGACGAAGGAGGAGTGAAGAAGAAACAGAAGAAGAAAAAGGATCCAAATGCACCTAAGAGGGCACTGTCTGGTTTCATGTTCTTTTCTCAGATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGACGTGGGAAGAGTACTTGGAGAAAAATGGAAAAATCTGTCGGGTATGGCTGCGGAGGAGAAGGAACCTTATGAGGCCAAAGCCCAAGAAGATAAAAAGCGTTACAAGGATGAGATGAGTGGTTACAACAAGAATCCTCAACCCATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA

Protein sequence

>Msa1382540

MTDGHLFNNITLGGRGGTNPGQIKIYSGGILWKRQGGGKSIDVDKADITGVTWMKVPKTNQLGVQIKDGLFYKFTGFRDQDVVSLTSFFQNTFGVTVGEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVMLEFHVDDTTGANEKDSLMEMSFHVPSSNTQFVGDEDRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYGSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVESELAMSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGGKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNLADAQPTVGVAKVLENDDDDAVDPHLERIRNEAGGDESDEEDSDFVLDKDDGGSPTDDSGADDSDASQSGGETEKPAKKEPKKDLPSKASTSKKKSKDADDEGGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSGMAAEEKEPYEAKAQEDKKRYKDEMSGYNKNPQPMNIDSGNESDSA*