AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374040 MtrunA17_Chr1g0155251 99.381 646 1 1 1 646 1 643 0.0 1313
Msa1374040 MtrunA17_Chr5g0437031 88.633 651 66 2 1 646 1 648 0.0 1113
Msa1374040 MtrunA17_Chr3g0143991 44.681 94 47 3 539 630 25 115 2.63e-11 62.4
Msa1374040 MtrunA17_Chr7g0242251 43.750 80 41 2 554 632 47 123 7.60e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374040 AT3G28730.1 75.655 649 150 6 1 645 1 645 0.0 929
Msa1374040 AT3G51880.2 45.455 88 44 2 545 631 40 124 1.43e-13 70.1
Msa1374040 AT3G51880.4 45.455 88 44 2 545 631 40 124 1.81e-13 68.9
Msa1374040 AT3G51880.5 45.455 88 44 2 545 631 40 124 2.09e-13 69.3
Msa1374040 AT3G51880.1 45.455 88 44 2 545 631 40 124 2.09e-13 69.3
Msa1374040 AT3G51880.3 45.455 88 44 2 545 631 40 124 2.09e-13 69.3
Msa1374040 AT1G20693.3 46.835 79 38 2 553 630 33 108 1.87e-11 62.8
Msa1374040 AT1G20693.2 46.835 79 38 2 553 630 33 108 1.90e-11 62.8
Msa1374040 AT1G20693.1 46.835 79 38 2 553 630 33 108 1.91e-11 62.8

Find 207 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGTTGCCTTAATATTAA+TGG 0.236445 tig0019465:+70726 Msa1374040:exon
ATCCTTCTTTGGTTCCTTCT+TGG 0.242213 tig0019465:-70138 None:intergenic
GTCCTGCCCATGCAGTTCTA+AGG 0.253010 tig0019465:+69364 Msa1374040:intron
TTACCAAGCCTGGAAAATTT+AGG 0.253732 tig0019465:+68892 Msa1374040:CDS
CGGGAATACCATTAATATTA+AGG 0.257243 tig0019465:-70734 None:intergenic
AGAAAGAGGTCCCACAATTT+TGG 0.272086 tig0019465:-71159 None:intergenic
AGAATAAGAGTGGGAGGTTT+AGG 0.278835 tig0019465:-69002 None:intergenic
AGGAAATATGCTGGCTTTCA+TGG 0.282409 tig0019465:+67414 Msa1374040:intron
AAAGAAGGATTTGCCTTCTA+AGG 0.286151 tig0019465:+70151 Msa1374040:CDS
CCGTGATAAAATAATGTCTA+TGG 0.288359 tig0019465:+67913 Msa1374040:CDS
TTTCTGTTACTGGGCGCAAT+TGG 0.293918 tig0019465:+66752 Msa1374040:CDS
TTAGAAGGCAAATCCTTCTT+TGG 0.294241 tig0019465:-70149 None:intergenic
CAGTTACTCCGAAGGTGTTT+TGG 0.314648 tig0019465:-66714 None:intergenic
GAGAAGCAACTTTCTGTTAC+TGG 0.317850 tig0019465:+66742 Msa1374040:CDS
TTCTGTTACTGGGCGCAATT+GGG 0.318614 tig0019465:+66753 Msa1374040:CDS
ATTCATTTCTCTGAATATTT+CGG 0.320481 tig0019465:-69250 None:intergenic
CAACCCATGAATATTGATTC+AGG 0.326088 tig0019465:+70684 Msa1374040:CDS
ACACCAAGTTGATTTGTCTT+TGG 0.327527 tig0019465:-66411 None:intergenic
TTCTTTGGTTCCTTCTTGGC+AGG 0.345422 tig0019465:-70134 None:intergenic
TAATCCTGGAATTTCATTTA+CGG 0.345587 tig0019465:+70409 Msa1374040:CDS
CTTTCTAGACCCTGCTCATC+CGG 0.350701 tig0019465:+71176 Msa1374040:three_prime_UTR
TCTTGGGCTTTGGCCTCATA+AGG 0.353348 tig0019465:-70612 None:intergenic
GAAGAAACAGAAGAAGAAAA+AGG 0.353379 tig0019465:+70226 Msa1374040:CDS
TTTCCCTTGAAGGTTTGTTT+GGG 0.354507 tig0019465:-67479 None:intergenic
ATCTCAGAAAGATTCTTTGA+TGG 0.362156 tig0019465:+67734 Msa1374040:intron
AAACCAGACAGTGCCCTCTT+AGG 0.362568 tig0019465:-70260 None:intergenic
GATCTTCATCACCAACAAAC+TGG 0.364930 tig0019465:-67788 None:intergenic
AATGAATACCACAATTTGTA+TGG 0.365076 tig0019465:+69266 Msa1374040:CDS
ATTTCCTGAATCAATATTCA+TGG 0.371026 tig0019465:-70688 None:intergenic
GGTTCTCCTACTGATGATTC+TGG 0.376502 tig0019465:+69973 Msa1374040:CDS
TGTCGATTTACCGTTACAAT+AGG 0.381736 tig0019465:-70842 None:intergenic
GATGCTGTTGTTACATTTGA+GGG 0.383536 tig0019465:+67959 Msa1374040:CDS
AGTGCCCTCTTAGGTGCATT+TGG 0.384070 tig0019465:-70251 None:intergenic
TTAGTCTTGATCCTCCTATT+CGG 0.386509 tig0019465:+68400 Msa1374040:CDS
TTAGAAGTAGATGCCTTAGA+AGG 0.388977 tig0019465:-70164 None:intergenic
TAACGGGCTGCTTGTTTGAA+TGG 0.399124 tig0019465:+70926 Msa1374040:three_prime_UTR
TGGTAAGGACACTTGATAAA+GGG 0.401651 tig0019465:-71221 None:intergenic
ATTACCTGCATCACGATATG+AGG 0.403729 tig0019465:-68441 None:intergenic
CTATGTCCCCGGGGTTATAA+CGG 0.410143 tig0019465:+70909 Msa1374040:three_prime_UTR
GGCGAACCACACTGCTGTAC+TGG 0.410835 tig0019465:-68197 None:intergenic
GTTGATAAGGCGGACATAAC+GGG 0.414369 tig0019465:+66369 Msa1374040:CDS
ATCACCAACAAACTGGGTAT+TGG 0.417370 tig0019465:-67781 None:intergenic
ACAATATTGCGTGGTTTGTC+CGG 0.417906 tig0019465:+68861 Msa1374040:CDS
CAATACATTACCTTGGTGTA+AGG 0.418775 tig0019465:-67991 None:intergenic
GTTTGAGTGTTCTATGTCCC+CGG 0.420624 tig0019465:+70898 Msa1374040:three_prime_UTR
ATTCACTGGTTTCCGTGATC+AGG 0.421922 tig0019465:+66461 Msa1374040:CDS
TAAAACTGCAGCCAAGCAAT+CGG 0.425637 tig0019465:-70754 None:intergenic
AAAGTCTGCCCTTTCCGAAT+AGG 0.427601 tig0019465:-68414 None:intergenic
ATATTGTGGTAAACACTTCA+TGG 0.428597 tig0019465:-68845 None:intergenic
GGCCACACCAACAGTTGGTT+GGG 0.430545 tig0019465:-69414 None:intergenic
CGGTGCCGCCACGGCCGCCG+AGG 0.437836 tig0019465:-65155 None:intergenic
AGTTCCAATACCCAGTTTGT+TGG 0.440167 tig0019465:+67777 Msa1374040:CDS
ACGGACGTGGGAAGAGTACT+TGG 0.442183 tig0019465:+70428 Msa1374040:CDS
TTGGTAAGGACACTTGATAA+AGG 0.442416 tig0019465:-71222 None:intergenic
CTTGGTGTTCAGATCAAAGA+TGG 0.447302 tig0019465:+66426 Msa1374040:CDS
TCCTGCCCATGCAGTTCTAA+GGG 0.450476 tig0019465:+69365 Msa1374040:intron
TTTGTTCTCGACAAGGATGA+TGG 0.451598 tig0019465:+69949 Msa1374040:CDS
GTCTCCCAAACAAACCTTCA+AGG 0.458044 tig0019465:+67475 Msa1374040:CDS
ATTAATATTAAGGCAACCTT+AGG 0.458269 tig0019465:-70724 None:intergenic
CATGCAGCCATACCTTGATA+AGG 0.460314 tig0019465:-71129 None:intergenic
ACACCTTCGGAGTAACTGTT+GGG 0.460966 tig0019465:+66719 Msa1374040:CDS
AGATGCTGTTGTTACATTTG+AGG 0.462575 tig0019465:+67958 Msa1374040:CDS
AATCTAAAGAAAACTAATCC+TGG 0.464926 tig0019465:+70395 Msa1374040:CDS
TGAAGATCGCCCTCCTGCTC+AGG 0.466330 tig0019465:+67803 Msa1374040:CDS
TAATGGTATTCCCGATTGCT+TGG 0.467642 tig0019465:+70743 Msa1374040:three_prime_UTR
ACTAAAGCTCCCGGATGAGC+AGG 0.468194 tig0019465:-71186 None:intergenic
TGGAATTTCATTTACGGACG+TGG 0.473424 tig0019465:+70415 Msa1374040:CDS
GGAGGCAAAGTTACCAAGCC+TGG 0.474637 tig0019465:+68882 Msa1374040:CDS
TGTTGATAAGGCGGACATAA+CGG 0.474692 tig0019465:+66368 Msa1374040:CDS
TTATTGGTGCTGCAGAATCC+GGG 0.475067 tig0019465:+66282 Msa1374040:intron
TGGGGAGAAGTTGATCTAAA+CGG 0.476817 tig0019465:+66772 Msa1374040:CDS
TTATGTGGTTGAAAGTGAAT+TGG 0.478915 tig0019465:+68567 Msa1374040:CDS
CAAATCAATTGATGTTGATA+AGG 0.479324 tig0019465:+66356 Msa1374040:CDS
TTTGAGTGTTCTATGTCCCC+GGG 0.479327 tig0019465:+70899 Msa1374040:three_prime_UTR
AACATTACCCTCGGCGGCCG+TGG 0.480494 tig0019465:+65147 Msa1374040:CDS
TATGTCCCCGGGGTTATAAC+GGG 0.482750 tig0019465:+70910 Msa1374040:three_prime_UTR
TTGAATGGCGTGAGGAAGGC+TGG 0.484793 tig0019465:+70941 Msa1374040:three_prime_UTR
GAATCAATATTCATGGGTTG+AGG 0.486272 tig0019465:-70681 None:intergenic
TGGCCACACCAACAGTTGGT+TGG 0.488815 tig0019465:-69415 None:intergenic
TTTCATTTCAGGAAATATGC+TGG 0.489570 tig0019465:+67405 Msa1374040:intron
AGGCTTGGTAACTTTGCCTC+CGG 0.495486 tig0019465:-68880 None:intergenic
ACAGACAAACTCACCTGAGC+AGG 0.497300 tig0019465:-67816 None:intergenic
AGTTTCTTCCAAAACACCTT+CGG 0.497818 tig0019465:+66706 Msa1374040:CDS
CAGATTTGAGTCTGATAAGA+AGG 0.497842 tig0019465:-69211 None:intergenic
TTTCACGTGGATGACACAAC+TGG 0.498298 tig0019465:+67520 Msa1374040:CDS
CACTCTTATTCTTCATGAAG+AGG 0.498347 tig0019465:+69013 Msa1374040:CDS
GCACCTAAGAGGGCACTGTC+TGG 0.501489 tig0019465:+70257 Msa1374040:CDS
AGAAGCAACTTTCTGTTACT+GGG 0.502319 tig0019465:+66743 Msa1374040:CDS
GGGTTGTTCTACAAATTCAC+TGG 0.502970 tig0019465:+66447 Msa1374040:CDS
AGGATCCAAATGCACCTAAG+AGG 0.505192 tig0019465:+70246 Msa1374040:CDS
CTTCCAGAAACCTGCCAAGA+AGG 0.506566 tig0019465:+70124 Msa1374040:intron
TGCCAAGAAGGAACCAAAGA+AGG 0.508120 tig0019465:+70136 Msa1374040:CDS
TCTATGGCTGATGTTGGTGC+TGG 0.508943 tig0019465:+67929 Msa1374040:CDS
TTTCTGATGCGCTCGAGATG+TGG 0.509278 tig0019465:-69473 None:intergenic
CCTCTGTCTCACCACCACTT+TGG 0.510686 tig0019465:-70017 None:intergenic
TCATCTTTGAAAGCTGAAGA+TGG 0.512966 tig0019465:+68942 Msa1374040:CDS
GGAGGAGAAGGAACCTTATG+AGG 0.513515 tig0019465:+70599 Msa1374040:CDS
AATATGCTGGCTTTCATGGT+TGG 0.513596 tig0019465:+67418 Msa1374040:CDS
ACGTCCGTAAATGAAATTCC+AGG 0.513793 tig0019465:-70413 None:intergenic
CAAGTTGGAGCTGTCTTACA+AGG 0.514183 tig0019465:+68627 Msa1374040:CDS
GTACCCTCATATCGTGATGC+AGG 0.515876 tig0019465:+68437 Msa1374040:CDS
ACAAACTGGGTATTGGAACT+TGG 0.516545 tig0019465:-67774 None:intergenic
ATGCAGCCATACCTTGATAA+GGG 0.518872 tig0019465:-71128 None:intergenic
TTTCCTGAATCAATATTCAT+GGG 0.520202 tig0019465:-70687 None:intergenic
GGGTATTGGAACTTGGTACA+TGG 0.520299 tig0019465:-67767 None:intergenic
GTAGTTTGAAACTGATTATG+TGG 0.523537 tig0019465:+68552 Msa1374040:intron
TTCCTACTAGATTGACTATG+TGG 0.523757 tig0019465:+69142 Msa1374040:intron
ATTACCCTCGGCGGCCGTGG+CGG 0.524515 tig0019465:+65150 Msa1374040:CDS
AAAACTGCAGCCAAGCAATC+GGG 0.526477 tig0019465:-70753 None:intergenic
CTCAAAGTACAAAGACAAGT+TGG 0.526767 tig0019465:+68612 Msa1374040:CDS
ACCAACTGTTGGTGTGGCCA+AGG 0.529642 tig0019465:+69418 Msa1374040:CDS
CGGACATAACGGGCGTAACA+TGG 0.530617 tig0019465:+66379 Msa1374040:CDS
AATGAATCTGACAGTGCCTA+AGG 0.531097 tig0019465:+70708 Msa1374040:CDS
ATGGCTGATGTTGGTGCTGG+AGG 0.532027 tig0019465:+67932 Msa1374040:CDS
TGATAAAACCATACAAATTG+TGG 0.532500 tig0019465:-69274 None:intergenic
GTAATTCAGTAATAACATAC+TGG 0.532948 tig0019465:+71011 Msa1374040:three_prime_UTR
TTTCTAGACCCTGCTCATCC+GGG 0.534065 tig0019465:+71177 Msa1374040:three_prime_UTR
AAGTATCCCTTATCAAGGTA+TGG 0.535971 tig0019465:+71122 Msa1374040:three_prime_UTR
TTGATCCTCCTATTCGGAAA+GGG 0.536206 tig0019465:+68406 Msa1374040:CDS
CTCTTCAACAACATTACCCT+CGG 0.540205 tig0019465:+65138 Msa1374040:CDS
ATGCAATACACCAAAATTGT+GGG 0.542628 tig0019465:+71149 Msa1374040:three_prime_UTR
GGTGCCGCCACGGCCGCCGA+GGG 0.543217 tig0019465:-65154 None:intergenic
GAATTTGAGCGACATGCTGC+TGG 0.545421 tig0019465:+69164 Msa1374040:CDS
AACACCTTCGGAGTAACTGT+TGG 0.545941 tig0019465:+66718 Msa1374040:CDS
CATGCAATACACCAAAATTG+TGG 0.547983 tig0019465:+71148 Msa1374040:three_prime_UTR
AAATTTAGGAGTTGTCAAGA+TGG 0.550659 tig0019465:+68906 Msa1374040:CDS
ATCTTCATCACCAACAAACT+GGG 0.552179 tig0019465:-67787 None:intergenic
TTTCTTTCTCGCCACCATGA+CGG 0.555642 tig0019465:+65107 Msa1374040:exon
TTGATATTTCTTAAATGTGG+TGG 0.556537 tig0019465:+70814 Msa1374040:three_prime_UTR
GAAAGAAGAAGCTCTTCTCA+AGG 0.556630 tig0019465:-68977 None:intergenic
AAGCAGCCCGTTATAACCCC+GGG 0.558730 tig0019465:-70916 None:intergenic
GGATCCAAATGCACCTAAGA+GGG 0.559964 tig0019465:+70247 Msa1374040:CDS
ACATGGTGCACTAAAGCTCC+CGG 0.562056 tig0019465:-71195 None:intergenic
GGCGTGAGGAAGGCTGGAGA+AGG 0.562775 tig0019465:+70947 Msa1374040:three_prime_UTR
TTGTTTGAATGGCGTGAGGA+AGG 0.563031 tig0019465:+70937 Msa1374040:three_prime_UTR
ATATCAAGTATCCCTTATCA+AGG 0.563880 tig0019465:+71117 Msa1374040:three_prime_UTR
AAAGAAGAAGCTCTTCTCAA+GGG 0.564045 tig0019465:-68976 None:intergenic
GTTCTTATCAAGTATCTGAT+CGG 0.564175 tig0019465:+71047 Msa1374040:three_prime_UTR
GTCTGCCCTTTCCGAATAGG+AGG 0.565917 tig0019465:-68411 None:intergenic
GACAAACTCACCTGAGCAGG+AGG 0.567937 tig0019465:-67813 None:intergenic
TGACACAACTGGAGCAAATG+AGG 0.569007 tig0019465:+67531 Msa1374040:CDS
ACCTTGGCCACACCAACAGT+TGG 0.570641 tig0019465:-69419 None:intergenic
GAGCGCATCAGAAATGAAGC+TGG 0.571748 tig0019465:+69482 Msa1374040:CDS
AGGAAGGCTGGAGAAGGATG+AGG 0.575261 tig0019465:+70953 Msa1374040:three_prime_UTR
ATCATCATTCTCAAGCACCT+TGG 0.580790 tig0019465:-69435 None:intergenic
CTTGATCCTCCTATTCGGAA+AGG 0.581438 tig0019465:+68405 Msa1374040:CDS
TCAATACACAGCGGAGGAGA+AGG 0.582588 tig0019465:+70587 Msa1374040:intron
CACTTGATAAAGGGGCAACA+TGG 0.585823 tig0019465:-71212 None:intergenic
TTGTCTCTGCACACTGAGAG+AGG 0.586134 tig0019465:-65056 None:intergenic
AACGGGCGTAACATGGATGA+AGG 0.587136 tig0019465:+66386 Msa1374040:CDS
CTCTTCATGAAGAATAAGAG+TGG 0.590015 tig0019465:-69012 None:intergenic
ACTTGATAAGAACCACTAGC+AGG 0.590226 tig0019465:-71037 None:intergenic
TCTGTTACTGGGCGCAATTG+GGG 0.591812 tig0019465:+66754 Msa1374040:CDS
GGTAAGGACACTTGATAAAG+GGG 0.594577 tig0019465:-71220 None:intergenic
GATGAGCAGGGTCTAGAAAG+AGG 0.595240 tig0019465:-71173 None:intergenic
TCTCCCAAACAAACCTTCAA+GGG 0.596624 tig0019465:+67476 Msa1374040:CDS
ATCAATTGATGTTGATAAGG+CGG 0.597783 tig0019465:+66359 Msa1374040:CDS
CAAGCAGCCCGTTATAACCC+CGG 0.597907 tig0019465:-70917 None:intergenic
CGCATCAGAAATGAAGCTGG+TGG 0.603857 tig0019465:+69485 Msa1374040:CDS
CTAAAGCTCCCGGATGAGCA+GGG 0.606043 tig0019465:-71185 None:intergenic
GGACAAACCACGCAATATTG+TGG 0.607048 tig0019465:-68859 None:intergenic
TTATGGAAGAGACAGGGAGG+TGG 0.608219 tig0019465:+66333 Msa1374040:CDS
ATATTGCGTGGTTTGTCCGG+AGG 0.609437 tig0019465:+68864 Msa1374040:CDS
AAGAAGAAGCTCTTCTCAAG+GGG 0.618644 tig0019465:-68975 None:intergenic
TGTCTCTGCACACTGAGAGA+GGG 0.619084 tig0019465:-65055 None:intergenic
GGAATTTCATTTACGGACGT+GGG 0.619820 tig0019465:+70416 Msa1374040:CDS
TTTCTCGCCACCATGACGGA+CGG 0.620285 tig0019465:+65111 Msa1374040:exon
TCAAAAGATGCTGATGACGA+AGG 0.621100 tig0019465:+70194 Msa1374040:CDS
GAGAGCTTACGGTGCCGCCA+CGG 0.622395 tig0019465:-65164 None:intergenic
GGTGGTATCTCCTATTGTAA+CGG 0.623791 tig0019465:+70832 Msa1374040:three_prime_UTR
TTGGTGTTCAGATCAAAGAT+GGG 0.623826 tig0019465:+66427 Msa1374040:CDS
CTCCCCAACAGTTACTCCGA+AGG 0.624094 tig0019465:-66722 None:intergenic
GTTCCAAAGACAAATCAACT+TGG 0.626047 tig0019465:+66408 Msa1374040:CDS
ACATACTGGTTACCTGCTAG+TGG 0.626603 tig0019465:+71025 Msa1374040:three_prime_UTR
TCATGAAGAATAAGAGTGGG+AGG 0.627094 tig0019465:-69008 None:intergenic
TTTGAGCGACATGCTGCTGG+TGG 0.628138 tig0019465:+69167 Msa1374040:CDS
GACTCTGATGCTAGCCAAAG+TGG 0.628895 tig0019465:+70003 Msa1374040:CDS
TGCCCAACCAACTGTTGGTG+TGG 0.630617 tig0019465:+69412 Msa1374040:CDS
GTTCTCGACAAGGATGATGG+AGG 0.634483 tig0019465:+69952 Msa1374040:CDS
GAAGAGATGACCGTCCGTCA+TGG 0.634783 tig0019465:-65121 None:intergenic
CCAAAGTGGTGGTGAGACAG+AGG 0.637450 tig0019465:+70017 Msa1374040:CDS
TATTGGTGCTGCAGAATCCG+GGG 0.638125 tig0019465:+66283 Msa1374040:intron
CTAATAATGACGAAGGTATG+CGG 0.638553 tig0019465:-68381 None:intergenic
GACGGAGAACTACCTGATCA+CGG 0.641013 tig0019465:-66473 None:intergenic
ATCAAGACTAATAATGACGA+AGG 0.641692 tig0019465:-68388 None:intergenic
TCTTCATGAAGAATAAGAGT+GGG 0.642579 tig0019465:-69011 None:intergenic
ATAATGTCTATGGCTGATGT+TGG 0.645958 tig0019465:+67923 Msa1374040:CDS
GCGCTCGAGATGTGGATCGA+CGG 0.648144 tig0019465:-69465 None:intergenic
GTGTTTACCACAATATTGCG+TGG 0.650738 tig0019465:+68852 Msa1374040:CDS
GCTGATGCCCAACCAACTGT+TGG 0.651825 tig0019465:+69407 Msa1374040:CDS
TTACCTGCATCACGATATGA+GGG 0.656286 tig0019465:-68440 None:intergenic
CTGCTTGTTTGAATGGCGTG+AGG 0.656311 tig0019465:+70933 Msa1374040:three_prime_UTR
AAAGATGCTGATGACGAAGG+AGG 0.658535 tig0019465:+70197 Msa1374040:CDS
TCTGCACCAGAATCATCAGT+AGG 0.661015 tig0019465:-69979 None:intergenic
CGTTACAAGGATGAGATGAG+TGG 0.662650 tig0019465:+70645 Msa1374040:CDS
CACCTTCGGAGTAACTGTTG+GGG 0.674663 tig0019465:+66720 Msa1374040:CDS
GAGATGACCGTCCGTCATGG+TGG 0.684087 tig0019465:-65118 None:intergenic
ACAAACTCACCTGAGCAGGA+GGG 0.692093 tig0019465:-67812 None:intergenic
CAAAATCCAGTACAGCAGTG+TGG 0.693832 tig0019465:+68191 Msa1374040:CDS
TGGTGGAGATGAAAGTGACG+AGG 0.704697 tig0019465:+69502 Msa1374040:CDS
TGTGATGTTGGAGTTTCACG+TGG 0.716384 tig0019465:+67507 Msa1374040:CDS
TTGAGTGTTCTATGTCCCCG+GGG 0.746581 tig0019465:+70900 Msa1374040:three_prime_UTR
TCTGATGCTAGCCAAAGTGG+TGG 0.752107 tig0019465:+70006 Msa1374040:CDS
TGGAGATGAAAGTGACGAGG+AGG 0.754949 tig0019465:+69505 Msa1374040:CDS
TTCAACAACATTACCCTCGG+CGG 0.763342 tig0019465:+65141 Msa1374040:CDS
GTATTGCAATCCTTACACCA+AGG 0.765044 tig0019465:+67981 Msa1374040:CDS
AGCAGCCCGTTATAACCCCG+GGG 0.772409 tig0019465:-70915 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAGAGTTTTTTTTTTA+TGG + tig0019465:69110-69129 Msa1374040:intron 10.0%
!! AGTAGATTTATTGAAAAAAA+TGG + tig0019465:65442-65461 Msa1374040:intron 15.0%
!! GTAGATTTATTGAAAAAAAT+GGG + tig0019465:65443-65462 Msa1374040:intron 15.0%
!! AAAATAATAATGAAAAGATG+AGG + tig0019465:66186-66205 Msa1374040:intron 15.0%
!! TACACTTATATTTGTATTAT+TGG + tig0019465:66266-66285 Msa1374040:intron 15.0%
!!! AAATATCTTTGAAAATAGTA+GGG - tig0019465:66970-66989 None:intergenic 15.0%
!!! TAAATATCTTTGAAAATAGT+AGG - tig0019465:66971-66990 None:intergenic 15.0%
!! TATATTAAAAACAAAAAGCA+AGG - tig0019465:68254-68273 None:intergenic 15.0%
!!! TGCTTTTGTATATATTAAAT+TGG + tig0019465:69901-69920 Msa1374040:intron 15.0%
!! AAATTAGGGATTAACAAAAA+TGG - tig0019465:65342-65361 None:intergenic 20.0%
!!! AATCACAATTTACACATTTT+TGG - tig0019465:65501-65520 None:intergenic 20.0%
!! TTAAATATCCATCTAGTATT+AGG + tig0019465:65576-65595 Msa1374040:intron 20.0%
!!! ATAAGTTTTGTAAGACTATT+TGG - tig0019465:66063-66082 None:intergenic 20.0%
!! AACATGTAAATACATATTCA+GGG - tig0019465:66500-66519 None:intergenic 20.0%
!! AAACATGTAAATACATATTC+AGG - tig0019465:66501-66520 None:intergenic 20.0%
!! ATCAAACACATAAATTTACT+CGG - tig0019465:66871-66890 None:intergenic 20.0%
!! TAAAAATGGGTACAAAAAAA+CGG - tig0019465:67085-67104 None:intergenic 20.0%
!! AATAGAACCAACTTAAAAAT+GGG - tig0019465:67098-67117 None:intergenic 20.0%
!! AAATAGAACCAACTTAAAAA+TGG - tig0019465:67099-67118 None:intergenic 20.0%
!!! TAAGTTGGTTCTATTTTTTT+TGG + tig0019465:67103-67122 Msa1374040:intron 20.0%
!!! AAGTTGGTTCTATTTTTTTT+GGG + tig0019465:67104-67123 Msa1374040:intron 20.0%
!! GAAATGAAAATAGAAACATA+AGG - tig0019465:67394-67413 None:intergenic 20.0%
!!! TATGTTTCTATTTTCATTTC+AGG + tig0019465:67394-67413 Msa1374040:intron 20.0%
!!! TGACATTTGTAAAATCATTT+TGG + tig0019465:67879-67898 Msa1374040:intron 20.0%
!!! TGTAAAATCATTTTGGTATT+AGG + tig0019465:67886-67905 Msa1374040:intron 20.0%
!! TAATTCACTATTCAATAATC+AGG + tig0019465:68815-68834 Msa1374040:intron 20.0%
!! AATTCACTATTCAATAATCA+GGG + tig0019465:68816-68835 Msa1374040:intron 20.0%
!! ATTCATTTCTCTGAATATTT+CGG - tig0019465:69253-69272 None:intergenic 20.0%
!!! CAAATATGTGTGATAAATTT+TGG - tig0019465:69319-69338 None:intergenic 20.0%
!! AATATAATAGGCTAAGATTA+TGG - tig0019465:70529-70548 None:intergenic 20.0%
!! CACAAACACAAAAATATAAT+AGG - tig0019465:70541-70560 None:intergenic 20.0%
!!! GTTTTGATATTTCTTAAATG+TGG + tig0019465:70811-70830 Msa1374040:three_prime_UTR 20.0%
! AAAAGGAGTTACAAAAGTTA+GGG - tig0019465:65269-65288 None:intergenic 25.0%
! AAAAAGGAGTTACAAAAGTT+AGG - tig0019465:65270-65289 None:intergenic 25.0%
!!! AGGGTTTATGATTTTGAAAA+AGG - tig0019465:65286-65305 None:intergenic 25.0%
! AAATCATAAACCCTAATACT+AGG + tig0019465:65292-65311 Msa1374040:intron 25.0%
! AATCATAAACCCTAATACTA+GGG + tig0019465:65293-65312 Msa1374040:intron 25.0%
! TGAAAACAACTTATGAACAA+TGG + tig0019465:65768-65787 Msa1374040:intron 25.0%
! CAGATAAAAATATATTCTGG+AGG + tig0019465:66306-66325 Msa1374040:CDS 25.0%
!!! TATATTCTGGAGGAATTTTA+TGG + tig0019465:66316-66335 Msa1374040:CDS 25.0%
! CAAATCAATTGATGTTGATA+AGG + tig0019465:66356-66375 Msa1374040:CDS 25.0%
! ACATGTAAATACATATTCAG+GGG - tig0019465:66499-66518 None:intergenic 25.0%
!!! CATGTTTTTGATGTTGAAAA+AGG + tig0019465:66514-66533 Msa1374040:intron 25.0%
! GAAAAAGGAATTCAATTGTT+TGG + tig0019465:66529-66548 Msa1374040:intron 25.0%
!!! ACGTTTTATACTTATTTTGC+AGG + tig0019465:66666-66685 Msa1374040:intron 25.0%
! GAGTAAATTTATGTGTTTGA+TGG + tig0019465:66870-66889 Msa1374040:intron 25.0%
! ATGTTTGACATCGTTTATAA+TGG + tig0019465:66898-66917 Msa1374040:intron 25.0%
!! AATTACCCTGAATTTTACAA+AGG - tig0019465:67029-67048 None:intergenic 25.0%
! TTCCTTATAAAAAGAAACAC+CGG + tig0019465:67048-67067 Msa1374040:intron 25.0%
!!! TTTTGTACCCATTTTTAAGT+TGG + tig0019465:67088-67107 Msa1374040:intron 25.0%
! TCTAATGAATTGATACAGTT+TGG + tig0019465:67583-67602 Msa1374040:intron 25.0%
!!! TTTTGGAATTGCGTTTTTTA+TGG + tig0019465:67690-67709 Msa1374040:intron 25.0%
! ATCTTGTTACAGCAAATTAT+AGG + tig0019465:67852-67871 Msa1374040:intron 25.0%
!!! CCATAGACATTATTTTATCA+CGG - tig0019465:67916-67935 None:intergenic 25.0%
!! AGATCAATCTTTTTCTTGAA+AGG - tig0019465:68084-68103 None:intergenic 25.0%
!!! AATTACACTTGTCATTTTTG+CGG + tig0019465:68145-68164 Msa1374040:CDS 25.0%
! AAACCTTAGGAAGTAAAAAT+AGG - tig0019465:68221-68240 None:intergenic 25.0%
! AAAAACAAAAAGCAAGGATT+AGG - tig0019465:68248-68267 None:intergenic 25.0%
! AAAGAATCAATTTACATGTG+TGG - tig0019465:68290-68309 None:intergenic 25.0%
!!! TGTAAATTGATTCTTTTCTC+TGG + tig0019465:68294-68313 Msa1374040:intron 25.0%
!!! TTGACTAAACTGTTGATAAT+TGG + tig0019465:68652-68671 Msa1374040:intron 25.0%
!!! TGACTAAACTGTTGATAATT+GGG + tig0019465:68653-68672 Msa1374040:intron 25.0%
! ATTCACTATTCAATAATCAG+GGG + tig0019465:68817-68836 Msa1374040:intron 25.0%
!! GAAACTAACATTTGGTATTT+TGG - tig0019465:69065-69084 None:intergenic 25.0%
!! AAATACCAAATGTTAGTTTC+TGG + tig0019465:69065-69084 Msa1374040:intron 25.0%
! AATGAATACCACAATTTGTA+TGG + tig0019465:69266-69285 Msa1374040:CDS 25.0%
! TGATAAAACCATACAAATTG+TGG - tig0019465:69277-69296 None:intergenic 25.0%
!!! ACAATTTGTATGGTTTTATC+AGG + tig0019465:69276-69295 Msa1374040:CDS 25.0%
! TGTTCTAATTTAAGTGATTG+AGG + tig0019465:69603-69622 Msa1374040:intron 25.0%
! TAGATATATTCAAATGAGGT+TGG - tig0019465:69648-69667 None:intergenic 25.0%
! TGCTTAGATATATTCAAATG+AGG - tig0019465:69652-69671 None:intergenic 25.0%
! AATCTAAAGAAAACTAATCC+TGG + tig0019465:70395-70414 Msa1374040:CDS 25.0%
! TAATCCTGGAATTTCATTTA+CGG + tig0019465:70409-70428 Msa1374040:CDS 25.0%
! AGAAAAATGGAAAAATCTGT+CGG + tig0019465:70451-70470 Msa1374040:CDS 25.0%
! TTTCCTGAATCAATATTCAT+GGG - tig0019465:70690-70709 None:intergenic 25.0%
! ATTTCCTGAATCAATATTCA+TGG - tig0019465:70691-70710 None:intergenic 25.0%
! ATTAATATTAAGGCAACCTT+AGG - tig0019465:70727-70746 None:intergenic 25.0%
! TAAGGTTGCCTTAATATTAA+TGG + tig0019465:70726-70745 Msa1374040:exon 25.0%
! TTGATATTTCTTAAATGTGG+TGG + tig0019465:70814-70833 Msa1374040:three_prime_UTR 25.0%
! GTAATTCAGTAATAACATAC+TGG + tig0019465:71011-71030 Msa1374040:three_prime_UTR 25.0%
GGTTATTCAAAAAGAGGAAA+TGG - tig0019465:65248-65267 None:intergenic 30.0%
AGTTAGGGTTATTCAAAAAG+AGG - tig0019465:65254-65273 None:intergenic 30.0%
TAGAGAAAACCCTAGTATTA+GGG - tig0019465:65305-65324 None:intergenic 30.0%
ATAGAGAAAACCCTAGTATT+AGG - tig0019465:65306-65325 None:intergenic 30.0%
ACAAATTGCACACAATAACT+AGG - tig0019465:65556-65575 None:intergenic 30.0%
ATAAGCTGATTATCCAAACA+GGG - tig0019465:65602-65621 None:intergenic 30.0%
TAAGCGCATATCATGATAAA+TGG - tig0019465:65643-65662 None:intergenic 30.0%
GCTGTTTATGTATGCTATAT+TGG + tig0019465:65726-65745 Msa1374040:intron 30.0%
! AAAACAATTCAGCGTTTTGT+GGG - tig0019465:65805-65824 None:intergenic 30.0%
GCTGTTTATGTATGCTATAT+TGG + tig0019465:65726-65745 Msa1374040:intron 30.0%
!! TCAACTAACGTAAGTTTTGT+GGG - tig0019465:65918-65937 None:intergenic 30.0%
! ATCAACTAACGTAAGTTTTG+TGG - tig0019465:65919-65938 None:intergenic 30.0%
!! GTTAGTTGATAAGCTCAAAT+AGG + tig0019465:65929-65948 Msa1374040:intron 30.0%
! AGTGTTTTCATTAGCTATCT+TGG + tig0019465:65971-65990 Msa1374040:intron 30.0%
!! GAATATATTTTTATCTGCCC+CGG - tig0019465:66303-66322 None:intergenic 30.0%
GGGCAGATAAAAATATATTC+TGG + tig0019465:66303-66322 Msa1374040:CDS 30.0%
! ATCAATTGATGTTGATAAGG+CGG + tig0019465:66359-66378 Msa1374040:CDS 30.0%
CATGTAAATACATATTCAGG+GGG - tig0019465:66498-66517 None:intergenic 30.0%
AGGAATTCAATTGTTTGGTT+TGG + tig0019465:66534-66553 Msa1374040:intron 30.0%
! TTGGTCAAAGTGTTAATCAA+AGG - tig0019465:66585-66604 None:intergenic 30.0%
CAAATCATCAACGTTTAGAT+TGG - tig0019465:66604-66623 None:intergenic 30.0%
!! CAATCTAAACGTTGATGATT+TGG + tig0019465:66602-66621 Msa1374040:intron 30.0%
!! AAACGTTGATGATTTGGATT+TGG + tig0019465:66608-66627 Msa1374040:intron 30.0%
TAAGTATAAAACGTCAACAC+AGG - tig0019465:66660-66679 None:intergenic 30.0%
AAATTTACTCGGAGTATAGT+AGG - tig0019465:66860-66879 None:intergenic 30.0%
CACTCAAAATACAAACTGAA+TGG - tig0019465:67001-67020 None:intergenic 30.0%
TCCTTATAAAAAGAAACACC+GGG + tig0019465:67049-67068 Msa1374040:intron 30.0%
AAAGTGAGAAGTTGTTAAGA+TGG + tig0019465:67196-67215 Msa1374040:intron 30.0%
AAGTTGTTAAGATGGAAATG+TGG + tig0019465:67204-67223 Msa1374040:intron 30.0%
AGTTGTTAAGATGGAAATGT+GGG + tig0019465:67205-67224 Msa1374040:intron 30.0%
!!! AAATGTGGGTTCTTTTTTTC+AGG + tig0019465:67219-67238 Msa1374040:intron 30.0%
!!! AATGTGGGTTCTTTTTTTCA+GGG + tig0019465:67220-67239 Msa1374040:intron 30.0%
TCAAAAAGATCCACCATAAA+GGG - tig0019465:67324-67343 None:intergenic 30.0%
ATCAAAAAGATCCACCATAA+AGG - tig0019465:67325-67344 None:intergenic 30.0%
!!! TTTATGGTGGATCTTTTTGA+TGG + tig0019465:67324-67343 Msa1374040:intron 30.0%
TTTCATTTCAGGAAATATGC+TGG + tig0019465:67405-67424 Msa1374040:intron 30.0%
ATCTCAGAAAGATTCTTTGA+TGG + tig0019465:67734-67753 Msa1374040:intron 30.0%
CCGTGATAAAATAATGTCTA+TGG + tig0019465:67913-67932 Msa1374040:CDS 30.0%
TGTTGTACAATACATTACCT+TGG - tig0019465:68001-68020 None:intergenic 30.0%
! AAATTTGCTTTATTGTGCAG+AGG + tig0019465:68108-68127 Msa1374040:intron 30.0%
ATCAAGACTAATAATGACGA+AGG - tig0019465:68391-68410 None:intergenic 30.0%
! GTAGTTTGAAACTGATTATG+TGG + tig0019465:68552-68571 Msa1374040:intron 30.0%
TTATGTGGTTGAAAGTGAAT+TGG + tig0019465:68567-68586 Msa1374040:CDS 30.0%
!!! AAGGGCATATTTTAGTTGAT+TGG + tig0019465:68730-68749 Msa1374040:intron 30.0%
!!! GCATATTTTAGTTGATTGGT+TGG + tig0019465:68734-68753 Msa1374040:intron 30.0%
ATATTGTGGTAAACACTTCA+TGG - tig0019465:68848-68867 None:intergenic 30.0%
AAATTTAGGAGTTGTCAAGA+TGG + tig0019465:68906-68925 Msa1374040:CDS 30.0%
TCTTCATGAAGAATAAGAGT+GGG - tig0019465:69014-69033 None:intergenic 30.0%
ATCAACCAGAAACTAACATT+TGG - tig0019465:69073-69092 None:intergenic 30.0%
ATAGTCAATCTAGTAGGAAA+TGG - tig0019465:69141-69160 None:intergenic 30.0%
! CTTTATTCATGAGTAGCTTT+TGG + tig0019465:69572-69591 Msa1374040:intron 30.0%
! GTCTACTTACATTTCAGTTT+TGG + tig0019465:69703-69722 Msa1374040:intron 30.0%
AATTGGTGTAAAATGTCTAC+AGG + tig0019465:69918-69937 Msa1374040:intron 30.0%
ACCTCTACTCTTTAAATCTT+TGG + tig0019465:70074-70093 Msa1374040:intron 30.0%
ACCAAAGATTTAAAGAGTAG+AGG - tig0019465:70078-70097 None:intergenic 30.0%
GAAGAAACAGAAGAAGAAAA+AGG + tig0019465:70226-70245 Msa1374040:CDS 30.0%
! TTTCATGTTCTTTTCTCAGA+TGG + tig0019465:70280-70299 Msa1374040:CDS 30.0%
GTACATACATATTAGTGATG+TGG + tig0019465:70325-70344 Msa1374040:intron 30.0%
GAAAAATGGAAAAATCTGTC+GGG + tig0019465:70452-70471 Msa1374040:CDS 30.0%
ATGGAACTGCAATGAAATAA+TGG - tig0019465:70490-70509 None:intergenic 30.0%
ATGCAAAGAAACAGAAAACT+TGG - tig0019465:70565-70584 None:intergenic 30.0%
!! GTAACGCTTTTTATCTTCTT+GGG - tig0019465:70631-70650 None:intergenic 30.0%
!! TGTAACGCTTTTTATCTTCT+TGG - tig0019465:70632-70651 None:intergenic 30.0%
!! AGAAGATAAAAAGCGTTACA+AGG + tig0019465:70632-70651 Msa1374040:CDS 30.0%
CGGGAATACCATTAATATTA+AGG - tig0019465:70737-70756 None:intergenic 30.0%
GTTCTTATCAAGTATCTGAT+CGG + tig0019465:71047-71066 Msa1374040:three_prime_UTR 30.0%
ATATCAAGTATCCCTTATCA+AGG + tig0019465:71117-71136 Msa1374040:three_prime_UTR 30.0%
ATGCAATACACCAAAATTGT+GGG + tig0019465:71149-71168 Msa1374040:three_prime_UTR 30.0%
TAAGAAGGGGAAAAAAGATT+TGG - tig0019465:71244-71263 None:intergenic 30.0%
TGAGGAAAGAAGATCGAAAA+TGG - tig0019465:65217-65236 None:intergenic 35.0%
TCAAAAAGAGGAAATGGTGA+AGG - tig0019465:65242-65261 None:intergenic 35.0%
! ACAATAACTAGGTTTGAAGC+TGG - tig0019465:65545-65564 None:intergenic 35.0%
GATAAGCTGATTATCCAAAC+AGG - tig0019465:65603-65622 None:intergenic 35.0%
! GAAAACAATTCAGCGTTTTG+TGG - tig0019465:65806-65825 None:intergenic 35.0%
TCATTAGCTGTTATGTGTCA+AGG + tig0019465:66131-66150 Msa1374040:intron 35.0%
! AGGAATTTTATGGAAGAGAC+AGG + tig0019465:66326-66345 Msa1374040:CDS 35.0%
! GGAATTTTATGGAAGAGACA+GGG + tig0019465:66327-66346 Msa1374040:CDS 35.0%
GTTCCAAAGACAAATCAACT+TGG + tig0019465:66408-66427 Msa1374040:CDS 35.0%
!! ACACCAAGTTGATTTGTCTT+TGG - tig0019465:66414-66433 None:intergenic 35.0%
! TTGGTGTTCAGATCAAAGAT+GGG + tig0019465:66427-66446 Msa1374040:CDS 35.0%
TAAATACATATTCAGGGGGA+CGG - tig0019465:66494-66513 None:intergenic 35.0%
!! TTCAATTGTTTGGTTTGGCT+TGG + tig0019465:66539-66558 Msa1374040:intron 35.0%
AGTTTCTTCCAAAACACCTT+CGG + tig0019465:66706-66725 Msa1374040:CDS 35.0%
AGAAGCAACTTTCTGTTACT+GGG + tig0019465:66743-66762 Msa1374040:CDS 35.0%
! TACCCTGAATTTTACAAAGG+CGG - tig0019465:67026-67045 None:intergenic 35.0%
TGATGTAACAACCAGATTGA+AGG - tig0019465:67165-67184 None:intergenic 35.0%
AAATGCAGTCTTTCCCTTTA+TGG + tig0019465:67308-67327 Msa1374040:intron 35.0%
!! CTGACTTGACTGCTTTTATA+CGG + tig0019465:67349-67368 Msa1374040:intron 35.0%
! TTTCCCTTGAAGGTTTGTTT+GGG - tig0019465:67482-67501 None:intergenic 35.0%
!! TTTTCCCTTGAAGGTTTGTT+TGG - tig0019465:67483-67502 None:intergenic 35.0%
!! TCACATCATTTTTCCCTTGA+AGG - tig0019465:67492-67511 None:intergenic 35.0%
AGGGAAAAATGATGTGATGT+TGG + tig0019465:67495-67514 Msa1374040:CDS 35.0%
ATACTATTCAAGCCCAAGTT+TGG - tig0019465:67646-67665 None:intergenic 35.0%
TTGGGCTTGAATAGTATTGT+AGG + tig0019465:67649-67668 Msa1374040:intron 35.0%
TATTGTAGGCTGCAGTTAAT+AGG + tig0019465:67663-67682 Msa1374040:intron 35.0%
! TGCAGTTAATAGGCTCATTT+TGG + tig0019465:67673-67692 Msa1374040:intron 35.0%
ATCTTCATCACCAACAAACT+GGG - tig0019465:67790-67809 None:intergenic 35.0%
ATAATGTCTATGGCTGATGT+TGG + tig0019465:67923-67942 Msa1374040:CDS 35.0%
AGATGCTGTTGTTACATTTG+AGG + tig0019465:67958-67977 Msa1374040:CDS 35.0%
GATGCTGTTGTTACATTTGA+GGG + tig0019465:67959-67978 Msa1374040:CDS 35.0%
! CAATACATTACCTTGGTGTA+AGG - tig0019465:67994-68013 None:intergenic 35.0%
!!! TCGCCTATTTTTACTTCCTA+AGG + tig0019465:68215-68234 Msa1374040:CDS 35.0%
AGGATTAGGAGATAAACCTT+AGG - tig0019465:68234-68253 None:intergenic 35.0%
! CTAATAATGACGAAGGTATG+CGG - tig0019465:68384-68403 None:intergenic 35.0%
!! TTAGTCTTGATCCTCCTATT+CGG + tig0019465:68400-68419 Msa1374040:CDS 35.0%
! CAGGTAATGTTTTACTTCGT+TGG + tig0019465:68456-68475 Msa1374040:intron 35.0%
CAGTTTCAAACTACACAGAA+AGG - tig0019465:68546-68565 None:intergenic 35.0%
CTCAAAGTACAAAGACAAGT+TGG + tig0019465:68612-68631 Msa1374040:CDS 35.0%
!! AGCTGCTTTGGAAATGAAAA+AGG + tig0019465:68711-68730 Msa1374040:intron 35.0%
!! GCTGCTTTGGAAATGAAAAA+GGG + tig0019465:68712-68731 Msa1374040:intron 35.0%
TTACCAAGCCTGGAAAATTT+AGG + tig0019465:68892-68911 Msa1374040:CDS 35.0%
! TGACAACTCCTAAATTTTCC+AGG - tig0019465:68903-68922 None:intergenic 35.0%
! TCATCTTTGAAAGCTGAAGA+TGG + tig0019465:68942-68961 Msa1374040:CDS 35.0%
AAAGAAGAAGCTCTTCTCAA+GGG - tig0019465:68979-68998 None:intergenic 35.0%
CTCTTCATGAAGAATAAGAG+TGG - tig0019465:69015-69034 None:intergenic 35.0%
CACTCTTATTCTTCATGAAG+AGG + tig0019465:69013-69032 Msa1374040:CDS 35.0%
TTCCTACTAGATTGACTATG+TGG + tig0019465:69142-69161 Msa1374040:intron 35.0%
TTCCACATAGTCAATCTAGT+AGG - tig0019465:69147-69166 None:intergenic 35.0%
CAGATTTGAGTCTGATAAGA+AGG - tig0019465:69214-69233 None:intergenic 35.0%
CAAGTAGTCAAGTACAGATT+AGG - tig0019465:69533-69552 None:intergenic 35.0%
GCTACTCATGAATAAAGAAG+AGG - tig0019465:69569-69588 None:intergenic 35.0%
! TTCAGATTTTGTTCTCGACA+AGG + tig0019465:69942-69961 Msa1374040:CDS 35.0%
AGATTTAAAGAGTAGAGGTG+AGG - tig0019465:70073-70092 None:intergenic 35.0%
! TGGTCATCATTAAGGTGTTA+CGG - tig0019465:70103-70122 None:intergenic 35.0%
TTAGAAGGCAAATCCTTCTT+TGG - tig0019465:70152-70171 None:intergenic 35.0%
AAAGAAGGATTTGCCTTCTA+AGG + tig0019465:70151-70170 Msa1374040:CDS 35.0%
TTAGAAGTAGATGCCTTAGA+AGG - tig0019465:70167-70186 None:intergenic 35.0%
!! GAAGAGTACTTGGAGAAAAA+TGG + tig0019465:70438-70457 Msa1374040:CDS 35.0%
TTTGCATGTTCAATACACAG+CGG + tig0019465:70578-70597 Msa1374040:intron 35.0%
! CTTTTTATCTTCTTGGGCTT+TGG - tig0019465:70625-70644 None:intergenic 35.0%
! GAATCAATATTCATGGGTTG+AGG - tig0019465:70684-70703 None:intergenic 35.0%
!! CAACCCATGAATATTGATTC+AGG + tig0019465:70684-70703 Msa1374040:CDS 35.0%
!! TGTCGATTTACCGTTACAAT+AGG - tig0019465:70845-70864 None:intergenic 35.0%
! GGTAAATCGACAGAGTTTTA+TGG + tig0019465:70853-70872 Msa1374040:three_prime_UTR 35.0%
AAGTATCCCTTATCAAGGTA+TGG + tig0019465:71122-71141 Msa1374040:three_prime_UTR 35.0%
CATGCAATACACCAAAATTG+TGG + tig0019465:71148-71167 Msa1374040:three_prime_UTR 35.0%
TGGTAAGGACACTTGATAAA+GGG - tig0019465:71224-71243 None:intergenic 35.0%
TTGGTAAGGACACTTGATAA+AGG - tig0019465:71225-71244 None:intergenic 35.0%
! AGGGGAAAAAAGATTTGGTA+AGG - tig0019465:71239-71258 None:intergenic 35.0%
CTCTTCAACAACATTACCCT+CGG + tig0019465:65138-65157 Msa1374040:CDS 40.0%
AAACAGGGCCTAATACTAGA+TGG - tig0019465:65587-65606 None:intergenic 40.0%
ATCTAGTATTAGGCCCTGTT+TGG + tig0019465:65586-65605 Msa1374040:intron 40.0%
! TGAAACACTCAGAGCTTGTT+TGG - tig0019465:66114-66133 None:intergenic 40.0%
!! ATTATTGGTGCTGCAGAATC+CGG + tig0019465:66281-66300 Msa1374040:intron 40.0%
! ATTTTATGGAAGAGACAGGG+AGG + tig0019465:66330-66349 Msa1374040:CDS 40.0%
! TGTTGATAAGGCGGACATAA+CGG + tig0019465:66368-66387 Msa1374040:CDS 40.0%
!! CTTGGTGTTCAGATCAAAGA+TGG + tig0019465:66426-66445 Msa1374040:CDS 40.0%
GGGTTGTTCTACAAATTCAC+TGG + tig0019465:66447-66466 Msa1374040:CDS 40.0%
!! TTGTTTGGTTTGGCTTGGTT+TGG + tig0019465:66544-66563 Msa1374040:intron 40.0%
GAGAAGCAACTTTCTGTTAC+TGG + tig0019465:66742-66761 Msa1374040:CDS 40.0%
! TGGGGAGAAGTTGATCTAAA+CGG + tig0019465:66772-66791 Msa1374040:CDS 40.0%
! GAGAAGTTGATCTAAACGGT+TGG + tig0019465:66776-66795 Msa1374040:intron 40.0%
CACCGCCTTTGTAAAATTCA+GGG + tig0019465:67021-67040 Msa1374040:intron 40.0%
! GCCCGGTGTTTCTTTTTATA+AGG - tig0019465:67053-67072 None:intergenic 40.0%
AACAACCAGATTGAAGGTAG+TGG - tig0019465:67159-67178 None:intergenic 40.0%
!!! TGGGTTCTTTTTTTCAGGGT+GGG + tig0019465:67224-67243 Msa1374040:intron 40.0%
CTCATTCATGCTTTCTTCTC+TGG + tig0019465:67279-67298 Msa1374040:intron 40.0%
TTATACGGCTATACTACCAG+TGG + tig0019465:67364-67383 Msa1374040:intron 40.0%
AGAAACATAAGGACATCCAC+TGG - tig0019465:67383-67402 None:intergenic 40.0%
!! AGGAAATATGCTGGCTTTCA+TGG + tig0019465:67414-67433 Msa1374040:intron 40.0%
!! AATATGCTGGCTTTCATGGT+TGG + tig0019465:67418-67437 Msa1374040:CDS 40.0%
! TGGTTCAAAGCAAGCTTTTG+AGG + tig0019465:67438-67457 Msa1374040:CDS 40.0%
TCTCCCAAACAAACCTTCAA+GGG + tig0019465:67476-67495 Msa1374040:CDS 40.0%
AAACCTTCCTCATCCAAACT+TGG + tig0019465:67630-67649 Msa1374040:intron 40.0%
AACCTTCCTCATCCAAACTT+GGG + tig0019465:67631-67650 Msa1374040:intron 40.0%
!! ACAAACTGGGTATTGGAACT+TGG - tig0019465:67777-67796 None:intergenic 40.0%
AGTTCCAATACCCAGTTTGT+TGG + tig0019465:67777-67796 Msa1374040:CDS 40.0%
ATCACCAACAAACTGGGTAT+TGG - tig0019465:67784-67803 None:intergenic 40.0%
GATCTTCATCACCAACAAAC+TGG - tig0019465:67791-67810 None:intergenic 40.0%
GTATTGCAATCCTTACACCA+AGG + tig0019465:67981-68000 Msa1374040:CDS 40.0%
!!! TTGTCATTTTTGCGGCTTCA+GGG + tig0019465:68153-68172 Msa1374040:CDS 40.0%
TGACAGCTTATCATGTCTGT+TGG + tig0019465:68333-68352 Msa1374040:intron 40.0%
TTGATCCTCCTATTCGGAAA+GGG + tig0019465:68406-68425 Msa1374040:CDS 40.0%
TTACCTGCATCACGATATGA+GGG - tig0019465:68443-68462 None:intergenic 40.0%
ATTACCTGCATCACGATATG+AGG - tig0019465:68444-68463 None:intergenic 40.0%
! GAAAGGAGCACAACATTGTT+AGG - tig0019465:68529-68548 None:intergenic 40.0%
! GATTGGTTGGTGTGAGAATT+TGG + tig0019465:68747-68766 Msa1374040:intron 40.0%
! TGTGAGAATTTGGTAACTCG+TGG + tig0019465:68757-68776 Msa1374040:intron 40.0%
! GTGAGAATTTGGTAACTCGT+GGG + tig0019465:68758-68777 Msa1374040:intron 40.0%
GTGTTTACCACAATATTGCG+TGG + tig0019465:68852-68871 Msa1374040:CDS 40.0%
! ACAATATTGCGTGGTTTGTC+CGG + tig0019465:68861-68880 Msa1374040:CDS 40.0%
! ACTCCTAAATTTTCCAGGCT+TGG - tig0019465:68898-68917 None:intergenic 40.0%
AAGAAGAAGCTCTTCTCAAG+GGG - tig0019465:68978-68997 None:intergenic 40.0%
GAAAGAAGAAGCTCTTCTCA+AGG - tig0019465:68980-68999 None:intergenic 40.0%
AGAATAAGAGTGGGAGGTTT+AGG - tig0019465:69005-69024 None:intergenic 40.0%
TCATGAAGAATAAGAGTGGG+AGG - tig0019465:69011-69030 None:intergenic 40.0%
ATCATCATTCTCAAGCACCT+TGG - tig0019465:69438-69457 None:intergenic 40.0%
AAAGGGATAGATGGACAAAC+AGG - tig0019465:69774-69793 None:intergenic 40.0%
GACAAACTGAAAGGGATAGA+TGG - tig0019465:69783-69802 None:intergenic 40.0%
! GAGAGCATGACAAACTGAAA+GGG - tig0019465:69791-69810 None:intergenic 40.0%
! AGAGAGCATGACAAACTGAA+AGG - tig0019465:69792-69811 None:intergenic 40.0%
CTCTGTATTGCTTACTGTTG+TGG + tig0019465:69808-69827 Msa1374040:intron 40.0%
TGTCATATGCGTATGTCTTG+TGG + tig0019465:69840-69859 Msa1374040:intron 40.0%
GTCATATGCGTATGTCTTGT+GGG + tig0019465:69841-69860 Msa1374040:intron 40.0%
TTTGTTCTCGACAAGGATGA+TGG + tig0019465:69949-69968 Msa1374040:CDS 40.0%
! CTGGAAGTTGGTCATCATTA+AGG - tig0019465:70111-70130 None:intergenic 40.0%
! ATCCTTCTTTGGTTCCTTCT+TGG - tig0019465:70141-70160 None:intergenic 40.0%
! TCAAAAGATGCTGATGACGA+AGG + tig0019465:70194-70213 Msa1374040:CDS 40.0%
! CTTTTCTCAGATGGAAAGAG+AGG + tig0019465:70289-70308 Msa1374040:CDS 40.0%
ACGTCCGTAAATGAAATTCC+AGG - tig0019465:70416-70435 None:intergenic 40.0%
TGGAATTTCATTTACGGACG+TGG + tig0019465:70415-70434 Msa1374040:CDS 40.0%
GGAATTTCATTTACGGACGT+GGG + tig0019465:70416-70435 Msa1374040:CDS 40.0%
ATGGAAAAATCTGTCGGGTA+TGG + tig0019465:70457-70476 Msa1374040:CDS 40.0%
TGGTCACAAATGACACTAGA+TGG - tig0019465:70509-70528 None:intergenic 40.0%
AATGAATCTGACAGTGCCTA+AGG + tig0019465:70708-70727 Msa1374040:CDS 40.0%
TAATGGTATTCCCGATTGCT+TGG + tig0019465:70743-70762 Msa1374040:three_prime_UTR 40.0%
TAAAACTGCAGCCAAGCAAT+CGG - tig0019465:70757-70776 None:intergenic 40.0%
GGTGGTATCTCCTATTGTAA+CGG + tig0019465:70832-70851 Msa1374040:three_prime_UTR 40.0%
ACTTGATAAGAACCACTAGC+AGG - tig0019465:71040-71059 None:intergenic 40.0%
ATGCAGCCATACCTTGATAA+GGG - tig0019465:71131-71150 None:intergenic 40.0%
! AGAAAGAGGTCCCACAATTT+TGG - tig0019465:71162-71181 None:intergenic 40.0%
GGTAAGGACACTTGATAAAG+GGG - tig0019465:71223-71242 None:intergenic 40.0%
TTTCTTTCTCGCCACCATGA+CGG + tig0019465:65107-65126 Msa1374040:exon 45.0%
TTCAACAACATTACCCTCGG+CGG + tig0019465:65141-65160 Msa1374040:CDS 45.0%
AGAGAGAGAGAGAGAGCTTA+CGG - tig0019465:65178-65197 None:intergenic 45.0%
GAGGAAATGGTGAAGGTTTG+AGG - tig0019465:65235-65254 None:intergenic 45.0%
! CACTCAGAGCTTGTTTGGAT+TGG - tig0019465:66109-66128 None:intergenic 45.0%
!! TTATTGGTGCTGCAGAATCC+GGG + tig0019465:66282-66301 Msa1374040:intron 45.0%
! GTTGATAAGGCGGACATAAC+GGG + tig0019465:66369-66388 Msa1374040:CDS 45.0%
!! ATTCACTGGTTTCCGTGATC+AGG + tig0019465:66461-66480 Msa1374040:CDS 45.0%
!!! CAGTTACTCCGAAGGTGTTT+TGG - tig0019465:66717-66736 None:intergenic 45.0%
AACACCTTCGGAGTAACTGT+TGG + tig0019465:66718-66737 Msa1374040:CDS 45.0%
ACACCTTCGGAGTAACTGTT+GGG + tig0019465:66719-66738 Msa1374040:CDS 45.0%
TTTCTGTTACTGGGCGCAAT+TGG + tig0019465:66752-66771 Msa1374040:CDS 45.0%
TTCTGTTACTGGGCGCAATT+GGG + tig0019465:66753-66772 Msa1374040:CDS 45.0%
ATGGCAGCATCATGAAGACA+TGG + tig0019465:66917-66936 Msa1374040:intron 45.0%
GCACCGCCTTTGTAAAATTC+AGG + tig0019465:67020-67039 Msa1374040:intron 45.0%
AAAAACGGCAGATAACTGCC+CGG - tig0019465:67070-67089 None:intergenic 45.0%
AAGCACCACTACCTTCAATC+TGG + tig0019465:67151-67170 Msa1374040:intron 45.0%
!!! GTGGGTTCTTTTTTTCAGGG+TGG + tig0019465:67223-67242 Msa1374040:intron 45.0%
!!! GGGTTCTTTTTTTCAGGGTG+GGG + tig0019465:67225-67244 Msa1374040:intron 45.0%
!!! TCTTTTTTTCAGGGTGGGGA+TGG + tig0019465:67229-67248 Msa1374040:intron 45.0%
!!! CTTTTTTTCAGGGTGGGGAT+GGG + tig0019465:67230-67249 Msa1374040:intron 45.0%
!!! TTTTTTTCAGGGTGGGGATG+GGG + tig0019465:67231-67250 Msa1374040:intron 45.0%
! ATGGGGTTTGCTTCTCAAAC+AGG + tig0019465:67248-67267 Msa1374040:intron 45.0%
TGCAGTCTTTCCCTTTATGG+TGG + tig0019465:67311-67330 Msa1374040:intron 45.0%
GTCTCCCAAACAAACCTTCA+AGG + tig0019465:67475-67494 Msa1374040:CDS 45.0%
TGTGATGTTGGAGTTTCACG+TGG + tig0019465:67507-67526 Msa1374040:CDS 45.0%
TTTCACGTGGATGACACAAC+TGG + tig0019465:67520-67539 Msa1374040:CDS 45.0%
TGACACAACTGGAGCAAATG+AGG + tig0019465:67531-67550 Msa1374040:CDS 45.0%
! AGTTTGGAACAACTTGCAGC+TGG + tig0019465:67599-67618 Msa1374040:intron 45.0%
TTCAAGCCCAAGTTTGGATG+AGG - tig0019465:67640-67659 None:intergenic 45.0%
!! GGGTATTGGAACTTGGTACA+TGG - tig0019465:67770-67789 None:intergenic 45.0%
GACACAATCGAACAGAAGCA+TGG - tig0019465:68062-68081 None:intergenic 45.0%
!!! CTTGTCATTTTTGCGGCTTC+AGG + tig0019465:68152-68171 Msa1374040:CDS 45.0%
CAAAATCCAGTACAGCAGTG+TGG + tig0019465:68191-68210 Msa1374040:CDS 45.0%
CTTGATCCTCCTATTCGGAA+AGG + tig0019465:68405-68424 Msa1374040:CDS 45.0%
AAAGTCTGCCCTTTCCGAAT+AGG - tig0019465:68417-68436 None:intergenic 45.0%
! CAAGTTGGAGCTGTCTTACA+AGG + tig0019465:68627-68646 Msa1374040:CDS 45.0%
CATTTCCAAAGCAGCTCTTG+AGG - tig0019465:68707-68726 None:intergenic 45.0%
GGACAAACCACGCAATATTG+TGG - tig0019465:68862-68881 None:intergenic 45.0%
TCAAGCCCTTAGAACTGCAT+GGG - tig0019465:69373-69392 None:intergenic 45.0%
TTCAAGCCCTTAGAACTGCA+TGG - tig0019465:69374-69393 None:intergenic 45.0%
ATATGCGTATGTCTTGTGGG+AGG + tig0019465:69844-69863 Msa1374040:intron 45.0%
GGTTCTCCTACTGATGATTC+TGG + tig0019465:69973-69992 Msa1374040:CDS 45.0%
TCTGCACCAGAATCATCAGT+AGG - tig0019465:69982-70001 None:intergenic 45.0%
! TTCTTTGGTTCCTTCTTGGC+AGG - tig0019465:70137-70156 None:intergenic 45.0%
TGCCAAGAAGGAACCAAAGA+AGG + tig0019465:70136-70155 Msa1374040:CDS 45.0%
! AAAGATGCTGATGACGAAGG+AGG + tig0019465:70197-70216 Msa1374040:CDS 45.0%
AGGATCCAAATGCACCTAAG+AGG + tig0019465:70246-70265 Msa1374040:CDS 45.0%
GGATCCAAATGCACCTAAGA+GGG + tig0019465:70247-70266 Msa1374040:CDS 45.0%
AAAAATCTGTCGGGTATGGC+TGG + tig0019465:70461-70480 Msa1374040:CDS 45.0%
CGTTACAAGGATGAGATGAG+TGG + tig0019465:70645-70664 Msa1374040:CDS 45.0%
AAAACTGCAGCCAAGCAATC+GGG - tig0019465:70756-70775 None:intergenic 45.0%
GTTTGAGTGTTCTATGTCCC+CGG + tig0019465:70898-70917 Msa1374040:three_prime_UTR 45.0%
TTTGAGTGTTCTATGTCCCC+GGG + tig0019465:70899-70918 Msa1374040:three_prime_UTR 45.0%
!! TAACGGGCTGCTTGTTTGAA+TGG + tig0019465:70926-70945 Msa1374040:three_prime_UTR 45.0%
TTGTTTGAATGGCGTGAGGA+AGG + tig0019465:70937-70956 Msa1374040:three_prime_UTR 45.0%
! ACATACTGGTTACCTGCTAG+TGG + tig0019465:71025-71044 Msa1374040:three_prime_UTR 45.0%
CATGCAGCCATACCTTGATA+AGG - tig0019465:71132-71151 None:intergenic 45.0%
CACTTGATAAAGGGGCAACA+TGG - tig0019465:71215-71234 None:intergenic 45.0%
!! AATTACAATAATAAAAATTA+GGG - tig0019465:65356-65375 None:intergenic 5.0%
!! TAATTACAATAATAAAAATT+AGG - tig0019465:65357-65376 None:intergenic 5.0%
!!! TATATATATATATATAGTTT+TGG + tig0019465:67556-67575 Msa1374040:intron 5.0%
TGTCTCTGCACACTGAGAGA+GGG - tig0019465:65058-65077 None:intergenic 50.0%
TTGTCTCTGCACACTGAGAG+AGG - tig0019465:65059-65078 None:intergenic 50.0%
!! TATTGGTGCTGCAGAATCCG+GGG + tig0019465:66283-66302 Msa1374040:intron 50.0%
TTATGGAAGAGACAGGGAGG+TGG + tig0019465:66333-66352 Msa1374040:CDS 50.0%
AACGGGCGTAACATGGATGA+AGG + tig0019465:66386-66405 Msa1374040:CDS 50.0%
GACGGAGAACTACCTGATCA+CGG - tig0019465:66476-66495 None:intergenic 50.0%
CACCTTCGGAGTAACTGTTG+GGG + tig0019465:66720-66739 Msa1374040:CDS 50.0%
TCTGTTACTGGGCGCAATTG+GGG + tig0019465:66754-66773 Msa1374040:CDS 50.0%
AGCCCAAGTTTGGATGAGGA+AGG - tig0019465:67636-67655 None:intergenic 50.0%
ACAAACTCACCTGAGCAGGA+GGG - tig0019465:67815-67834 None:intergenic 50.0%
ACAGACAAACTCACCTGAGC+AGG - tig0019465:67819-67838 None:intergenic 50.0%
TCTATGGCTGATGTTGGTGC+TGG + tig0019465:67929-67948 Msa1374040:CDS 50.0%
! ATTTTTGCGGCTTCAGGGAC+AGG + tig0019465:68158-68177 Msa1374040:CDS 50.0%
GTACCCTCATATCGTGATGC+AGG + tig0019465:68437-68456 Msa1374040:CDS 50.0%
CTCTTGAGGAGCAGTATCTC+AGG - tig0019465:68693-68712 None:intergenic 50.0%
! ATATTGCGTGGTTTGTCCGG+AGG + tig0019465:68864-68883 Msa1374040:CDS 50.0%
! AGGCTTGGTAACTTTGCCTC+CGG - tig0019465:68883-68902 None:intergenic 50.0%
GAATTTGAGCGACATGCTGC+TGG + tig0019465:69164-69183 Msa1374040:CDS 50.0%
! TCCTGCCCATGCAGTTCTAA+GGG + tig0019465:69365-69384 Msa1374040:intron 50.0%
TTTCTGATGCGCTCGAGATG+TGG - tig0019465:69476-69495 None:intergenic 50.0%
GAGCGCATCAGAAATGAAGC+TGG + tig0019465:69482-69501 Msa1374040:CDS 50.0%
CGCATCAGAAATGAAGCTGG+TGG + tig0019465:69485-69504 Msa1374040:CDS 50.0%
TGGTGGAGATGAAAGTGACG+AGG + tig0019465:69502-69521 Msa1374040:CDS 50.0%
TGGAGATGAAAGTGACGAGG+AGG + tig0019465:69505-69524 Msa1374040:CDS 50.0%
! GTTCTCGACAAGGATGATGG+AGG + tig0019465:69952-69971 Msa1374040:CDS 50.0%
GACTCTGATGCTAGCCAAAG+TGG + tig0019465:70003-70022 Msa1374040:CDS 50.0%
TCTGATGCTAGCCAAAGTGG+TGG + tig0019465:70006-70025 Msa1374040:CDS 50.0%
! CTTGGCAGGTTTCTGGAAGT+TGG - tig0019465:70123-70142 None:intergenic 50.0%
CTTCCAGAAACCTGCCAAGA+AGG + tig0019465:70124-70143 Msa1374040:intron 50.0%
GTTCCTTCTTGGCAGGTTTC+TGG - tig0019465:70130-70149 None:intergenic 50.0%
AGTGCCCTCTTAGGTGCATT+TGG - tig0019465:70254-70273 None:intergenic 50.0%
AAACCAGACAGTGCCCTCTT+AGG - tig0019465:70263-70282 None:intergenic 50.0%
GCATGTTCAATACACAGCGG+AGG + tig0019465:70581-70600 Msa1374040:intron 50.0%
TCAATACACAGCGGAGGAGA+AGG + tig0019465:70587-70606 Msa1374040:intron 50.0%
GGAGGAGAAGGAACCTTATG+AGG + tig0019465:70599-70618 Msa1374040:CDS 50.0%
! TCTTGGGCTTTGGCCTCATA+AGG - tig0019465:70615-70634 None:intergenic 50.0%
TTGAGTGTTCTATGTCCCCG+GGG + tig0019465:70900-70919 Msa1374040:three_prime_UTR 50.0%
CTATGTCCCCGGGGTTATAA+CGG + tig0019465:70909-70928 Msa1374040:three_prime_UTR 50.0%
TATGTCCCCGGGGTTATAAC+GGG + tig0019465:70910-70929 Msa1374040:three_prime_UTR 50.0%
CTGCTTGTTTGAATGGCGTG+AGG + tig0019465:70933-70952 Msa1374040:three_prime_UTR 50.0%
GATGAGCAGGGTCTAGAAAG+AGG - tig0019465:71176-71195 None:intergenic 50.0%
CTTTCTAGACCCTGCTCATC+CGG + tig0019465:71176-71195 Msa1374040:three_prime_UTR 50.0%
TTTCTAGACCCTGCTCATCC+GGG + tig0019465:71177-71196 Msa1374040:three_prime_UTR 50.0%
ACATGGTGCACTAAAGCTCC+CGG - tig0019465:71198-71217 None:intergenic 50.0%
! TTTCTCGCCACCATGACGGA+CGG + tig0019465:65111-65130 Msa1374040:exon 55.0%
GAAGAGATGACCGTCCGTCA+TGG - tig0019465:65124-65143 None:intergenic 55.0%
!! CGGACATAACGGGCGTAACA+TGG + tig0019465:66379-66398 Msa1374040:CDS 55.0%
CTCCCCAACAGTTACTCCGA+AGG - tig0019465:66725-66744 None:intergenic 55.0%
GACAAACTCACCTGAGCAGG+AGG - tig0019465:67816-67835 None:intergenic 55.0%
!! ATGGCTGATGTTGGTGCTGG+AGG + tig0019465:67932-67951 Msa1374040:CDS 55.0%
GTCTGCCCTTTCCGAATAGG+AGG - tig0019465:68414-68433 None:intergenic 55.0%
CTGCTCCTCAAGAGCTGCTT+TGG + tig0019465:68699-68718 Msa1374040:intron 55.0%
GGAGGCAAAGTTACCAAGCC+TGG + tig0019465:68882-68901 Msa1374040:CDS 55.0%
TTTGAGCGACATGCTGCTGG+TGG + tig0019465:69167-69186 Msa1374040:CDS 55.0%
GTCCTGCCCATGCAGTTCTA+AGG + tig0019465:69364-69383 Msa1374040:intron 55.0%
GCTGATGCCCAACCAACTGT+TGG + tig0019465:69407-69426 Msa1374040:CDS 55.0%
TGCCCAACCAACTGTTGGTG+TGG + tig0019465:69412-69431 Msa1374040:CDS 55.0%
GGCCACACCAACAGTTGGTT+GGG - tig0019465:69417-69436 None:intergenic 55.0%
TGGCCACACCAACAGTTGGT+TGG - tig0019465:69418-69437 None:intergenic 55.0%
ACCAACTGTTGGTGTGGCCA+AGG + tig0019465:69418-69437 Msa1374040:CDS 55.0%
ACCTTGGCCACACCAACAGT+TGG - tig0019465:69422-69441 None:intergenic 55.0%
CCTCTGTCTCACCACCACTT+TGG - tig0019465:70020-70039 None:intergenic 55.0%
! CCAAAGTGGTGGTGAGACAG+AGG + tig0019465:70017-70036 Msa1374040:CDS 55.0%
!! ACGGACGTGGGAAGAGTACT+TGG + tig0019465:70428-70447 Msa1374040:CDS 55.0%
AAGCAGCCCGTTATAACCCC+GGG - tig0019465:70919-70938 None:intergenic 55.0%
CAAGCAGCCCGTTATAACCC+CGG - tig0019465:70920-70939 None:intergenic 55.0%
TTGAATGGCGTGAGGAAGGC+TGG + tig0019465:70941-70960 Msa1374040:three_prime_UTR 55.0%
AGGAAGGCTGGAGAAGGATG+AGG + tig0019465:70953-70972 Msa1374040:three_prime_UTR 55.0%
CTAAAGCTCCCGGATGAGCA+GGG - tig0019465:71188-71207 None:intergenic 55.0%
ACTAAAGCTCCCGGATGAGC+AGG - tig0019465:71189-71208 None:intergenic 55.0%
GAGATGACCGTCCGTCATGG+TGG - tig0019465:65121-65140 None:intergenic 60.0%
TGAAGATCGCCCTCCTGCTC+AGG + tig0019465:67803-67822 Msa1374040:CDS 60.0%
GGCGAACCACACTGCTGTAC+TGG - tig0019465:68200-68219 None:intergenic 60.0%
GCCCTTAGAACTGCATGGGC+AGG - tig0019465:69369-69388 None:intergenic 60.0%
GCGCTCGAGATGTGGATCGA+CGG - tig0019465:69468-69487 None:intergenic 60.0%
GTCTTGTGGGAGGCTGCATG+TGG + tig0019465:69854-69873 Msa1374040:intron 60.0%
!! GCACCTAAGAGGGCACTGTC+TGG + tig0019465:70257-70276 Msa1374040:CDS 60.0%
AGCAGCCCGTTATAACCCCG+GGG - tig0019465:70918-70937 None:intergenic 60.0%
AACATTACCCTCGGCGGCCG+TGG + tig0019465:65147-65166 Msa1374040:CDS 65.0%
!! GAGAGCTTACGGTGCCGCCA+CGG - tig0019465:65167-65186 None:intergenic 65.0%
TGTGGGAGGCTGCATGTGGC+AGG + tig0019465:69858-69877 Msa1374040:intron 65.0%
GGCGTGAGGAAGGCTGGAGA+AGG + tig0019465:70947-70966 Msa1374040:three_prime_UTR 65.0%
ATTACCCTCGGCGGCCGTGG+CGG + tig0019465:65150-65169 Msa1374040:CDS 70.0%
!! GGTGCCGCCACGGCCGCCGA+GGG - tig0019465:65157-65176 None:intergenic 85.0%
!!! CGGTGCCGCCACGGCCGCCG+AGG - tig0019465:65158-65177 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
tig0019465 gene 65053 71267 65053 ID=Msa1374040;Name=Msa1374040
tig0019465 mRNA 65053 71267 65053 ID=Msa1374040-mRNA-1;Parent=Msa1374040;Name=Msa1374040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=70|0.93|0.93|1|1|1|16|539|646
tig0019465 exon 65053 65176 65053 ID=Msa1374040-mRNA-1:exon:3685;Parent=Msa1374040-mRNA-1
tig0019465 exon 66297 66482 66297 ID=Msa1374040-mRNA-1:exon:3686;Parent=Msa1374040-mRNA-1
tig0019465 exon 66688 66793 66688 ID=Msa1374040-mRNA-1:exon:3687;Parent=Msa1374040-mRNA-1
tig0019465 exon 67416 67552 67416 ID=Msa1374040-mRNA-1:exon:3688;Parent=Msa1374040-mRNA-1
tig0019465 exon 67741 67824 67741 ID=Msa1374040-mRNA-1:exon:3689;Parent=Msa1374040-mRNA-1
tig0019465 exon 67908 68002 67908 ID=Msa1374040-mRNA-1:exon:3690;Parent=Msa1374040-mRNA-1
tig0019465 exon 68128 68236 68128 ID=Msa1374040-mRNA-1:exon:3691;Parent=Msa1374040-mRNA-1
tig0019465 exon 68372 68458 68372 ID=Msa1374040-mRNA-1:exon:3692;Parent=Msa1374040-mRNA-1
tig0019465 exon 68556 68648 68556 ID=Msa1374040-mRNA-1:exon:3693;Parent=Msa1374040-mRNA-1
tig0019465 exon 68837 69034 68837 ID=Msa1374040-mRNA-1:exon:3694;Parent=Msa1374040-mRNA-1
tig0019465 exon 69152 69297 69152 ID=Msa1374040-mRNA-1:exon:3695;Parent=Msa1374040-mRNA-1
tig0019465 exon 69379 69526 69379 ID=Msa1374040-mRNA-1:exon:3696;Parent=Msa1374040-mRNA-1
tig0019465 exon 69940 70038 69940 ID=Msa1374040-mRNA-1:exon:3697;Parent=Msa1374040-mRNA-1
tig0019465 exon 70131 70310 70131 ID=Msa1374040-mRNA-1:exon:3698;Parent=Msa1374040-mRNA-1
tig0019465 exon 70395 70482 70395 ID=Msa1374040-mRNA-1:exon:3699;Parent=Msa1374040-mRNA-1
tig0019465 exon 70598 71267 70598 ID=Msa1374040-mRNA-1:exon:3700;Parent=Msa1374040-mRNA-1
tig0019465 five_prime_UTR 65053 65122 65053 ID=Msa1374040-mRNA-1:five_prime_utr;Parent=Msa1374040-mRNA-1
tig0019465 CDS 65123 65176 65123 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 66297 66482 66297 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 66688 66793 66688 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 67416 67552 67416 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 67741 67824 67741 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 67908 68002 67908 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 68128 68236 68128 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 68372 68458 68372 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 68556 68648 68556 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 68837 69034 68837 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 69152 69297 69152 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 69379 69526 69379 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 69940 70038 69940 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 70131 70310 70131 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 70395 70482 70395 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 CDS 70598 70728 70598 ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465 three_prime_UTR 70729 71267 70729 ID=Msa1374040-mRNA-1:three_prime_utr;Parent=Msa1374040-mRNA-1
Gene Sequence

>Msa1374040

ATGACGGACGGTCATCTCTTCAACAACATTACCCTCGGCGGCCGTGGCGGCACCAATCCGGGGCAGATAAAAATATATTCTGGAGGAATTTTATGGAAGAGACAGGGAGGTGGCAAATCAATTGATGTTGATAAGGCGGACATAACGGGCGTAACATGGATGAAGGTTCCAAAGACAAATCAACTTGGTGTTCAGATCAAAGATGGGTTGTTCTACAAATTCACTGGTTTCCGTGATCAGGATGTTGTAAGCTTGACAAGTTTCTTCCAAAACACCTTCGGAGTAACTGTTGGGGAGAAGCAACTTTCTGTTACTGGGCGCAATTGGGGAGAAGTTGATCTAAACGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCCCAAACAAACCTTCAAGGGAAAAATGATGTGATGTTGGAGTTTCACGTGGATGACACAACTGGAGCAAATGAGAAAGATTCTTTGATGGAGATGAGTTTCCATGTACCAAGTTCCAATACCCAGTTTGTTGGTGATGAAGATCGCCCTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGAGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAATTACACTTGTCATTTTTGCGGCTTCAGGGACAGGCTAACGATTTCAAAATCCAGTACAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAGCCGCATACCTTCGTCATTATTAGTCTTGATCCTCCTATTCGGAAAGGGCAGACTTTGTACCCTCATATCGTGATGCAGTTTGAAACTGATTATGTGGTTGAAAGTGAATTGGCAATGAGTGAAGATCTTTATAACTCAAAGTACAAAGACAAGTTGGAGCTGTCTTACAAGGGGCTTATCCATGAAGTGTTTACCACAATATTGCGTGGTTTGTCCGGAGGCAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAGTCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTGCCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAACATGCATTACTTTGACCTTCTTATCAGACTCAAATCTGAGCAAGAGCATCTCTTCCGAAATATTCAGAGAAATGAATACCACAATTTGTATGGTTTTATCAGTTCTAAGGGCTTGAAAATTATGAATTTAGCTGATGCCCAACCAACTGTTGGTGTGGCCAAGGTGCTTGAGAATGATGATGATGATGCCGTCGATCCACATCTCGAGCGCATCAGAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCAGATTTTGTTCTCGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGTGCAGATGACTCTGATGCTAGCCAAAGTGGTGGTGAGACAGAGAAACCTGCCAAGAAGGAACCAAAGAAGGATTTGCCTTCTAAGGCATCTACTTCTAAGAAGAAATCAAAAGATGCTGATGACGAAGGAGGAGTGAAGAAGAAACAGAAGAAGAAAAAGGATCCAAATGCACCTAAGAGGGCACTGTCTGGTTTCATGTTCTTTTCTCAGATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGACGTGGGAAGAGTACTTGGAGAAAAATGGAAAAATCTGTCGGGTATGGCTGCGGAGGAGAAGGAACCTTATGAGGCCAAAGCCCAAGAAGATAAAAAGCGTTACAAGGATGAGATGAGTGGTTACAACAAGAATCCTCAACCCATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA
Protein sequence

>Msa1374040

MTDGHLFNNITLGGRGGTNPGQIKIYSGGILWKRQGGGKSIDVDKADITGVTWMKVPKTNQLGVQIKDGLFYKFTGFRDQDVVSLTSFFQNTFGVTVGEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVMLEFHVDDTTGANEKDSLMEMSFHVPSSNTQFVGDEDRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVESELAMSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGGKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNLADAQPTVGVAKVLENDDDDAVDPHLERIRNEAGGDESDEEDSDFVLDKDDGGSPTDDSGADDSDASQSGGETEKPAKKEPKKDLPSKASTSKKKSKDADDEGGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSGMAAEEKEPYEAKAQEDKKRYKDEMSGYNKNPQPMNIDSGNESDSA*