AlfalfaGEDB | Msa1374040

M. sativa cultivar zhongmu-4 / Msa1374040

KEGG: K09272
GO: GO:0000003 GO:0000228 GO:0000741 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008023 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009791 GO:0009889 GO:0009987 GO:0010197 GO:0010228 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0035101 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0048229 GO:0048284 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF17292.5

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374040	XP_013466118.1	99.381	646	1	1	1	646	1	643	0.0	1313

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374040	sp\|O04235\|SSRP1_VICFA	94.281	647	31	4	1	646	1	642	0.0	1168

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374040	A0A072VEB0	99.381	646	1	1	1	646	1	643	0.0	1313

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TFs/TRs:

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Gene ID	Type	Classification
Msa1374040	TR	HMG

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000190	Msa1374040	0.804279	2.331692e-49	-8.615850e-47
Msa0001450	Msa1374040	0.816804	4.577303e-52	-8.615850e-47
Msa0001780	Msa1374040	0.844591	6.878121e-59	-8.615850e-47
Msa0002490	Msa1374040	0.805976	1.029059e-49	-8.615850e-47
Msa0003220	Msa1374040	0.819699	1.012743e-52	-8.615850e-47
Msa0003700	Msa1374040	0.960729	6.903786e-119	-8.615850e-47
Msa0003720	Msa1374040	0.826883	2.124499e-54	-8.615850e-47
Msa0007480	Msa1374040	0.855372	6.596363e-62	-8.615850e-47
Msa0007970	Msa1374040	0.817269	3.599314e-52	-8.615850e-47
Msa0008670	Msa1374040	0.833630	4.776895e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374040	MtrunA17_Chr1g0155251	99.381	646	1	1	1	646	1	643	0.0	1313
Msa1374040	MtrunA17_Chr5g0437031	88.633	651	66	2	1	646	1	648	0.0	1113
Msa1374040	MtrunA17_Chr3g0143991	44.681	94	47	3	539	630	25	115	2.63e-11	62.4
Msa1374040	MtrunA17_Chr7g0242251	43.750	80	41	2	554	632	47	123	7.60e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374040	AT3G28730.1	75.655	649	150	6	1	645	1	645	0.0	929
Msa1374040	AT3G51880.2	45.455	88	44	2	545	631	40	124	1.43e-13	70.1
Msa1374040	AT3G51880.4	45.455	88	44	2	545	631	40	124	1.81e-13	68.9
Msa1374040	AT3G51880.5	45.455	88	44	2	545	631	40	124	2.09e-13	69.3
Msa1374040	AT3G51880.1	45.455	88	44	2	545	631	40	124	2.09e-13	69.3
Msa1374040	AT3G51880.3	45.455	88	44	2	545	631	40	124	2.09e-13	69.3
Msa1374040	AT1G20693.3	46.835	79	38	2	553	630	33	108	1.87e-11	62.8
Msa1374040	AT1G20693.2	46.835	79	38	2	553	630	33	108	1.90e-11	62.8
Msa1374040	AT1G20693.1	46.835	79	38	2	553	630	33	108	1.91e-11	62.8

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Find 207 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCAGCCAAGCAATC+GGG	0.526477	tig0019465:-70753	None:intergenic
AAACCAGACAGTGCCCTCTT+AGG	0.362568	tig0019465:-70260	None:intergenic
AAAGAAGAAGCTCTTCTCAA+GGG	0.564045	tig0019465:-68976	None:intergenic
AAAGAAGGATTTGCCTTCTA+AGG	0.286151	tig0019465:+70151	Msa1374040:CDS
AAAGATGCTGATGACGAAGG+AGG	0.658535	tig0019465:+70197	Msa1374040:CDS
AAAGTCTGCCCTTTCCGAAT+AGG	0.427601	tig0019465:-68414	None:intergenic
AAATTTAGGAGTTGTCAAGA+TGG	0.550659	tig0019465:+68906	Msa1374040:CDS
AACACCTTCGGAGTAACTGT+TGG	0.545941	tig0019465:+66718	Msa1374040:CDS
AACATTACCCTCGGCGGCCG+TGG	0.480494	tig0019465:+65147	Msa1374040:CDS
AACGGGCGTAACATGGATGA+AGG	0.587136	tig0019465:+66386	Msa1374040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTTATTCAAAAAGAGGAAA+TGG	-	tig0019465:65248-65267	None:intergenic	30.0%
AGTTAGGGTTATTCAAAAAG+AGG	-	tig0019465:65254-65273	None:intergenic	30.0%
TAGAGAAAACCCTAGTATTA+GGG	-	tig0019465:65305-65324	None:intergenic	30.0%
ATAGAGAAAACCCTAGTATT+AGG	-	tig0019465:65306-65325	None:intergenic	30.0%
ACAAATTGCACACAATAACT+AGG	-	tig0019465:65556-65575	None:intergenic	30.0%
ATAAGCTGATTATCCAAACA+GGG	-	tig0019465:65602-65621	None:intergenic	30.0%
TAAGCGCATATCATGATAAA+TGG	-	tig0019465:65643-65662	None:intergenic	30.0%
GCTGTTTATGTATGCTATAT+TGG	+	tig0019465:65726-65745	Msa1374040:intron	30.0%
GCTGTTTATGTATGCTATAT+TGG	+	tig0019465:65726-65745	Msa1374040:intron	30.0%
GGGCAGATAAAAATATATTC+TGG	+	tig0019465:66303-66322	Msa1374040:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019465	gene	65053	71267	65053	ID=Msa1374040;Name=Msa1374040
tig0019465	mRNA	65053	71267	65053	ID=Msa1374040-mRNA-1;Parent=Msa1374040;Name=Msa1374040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=70\|0.93\|0.93\|1\|1\|1\|16\|539\|646
tig0019465	exon	65053	65176	65053	ID=Msa1374040-mRNA-1:exon:3685;Parent=Msa1374040-mRNA-1
tig0019465	exon	66297	66482	66297	ID=Msa1374040-mRNA-1:exon:3686;Parent=Msa1374040-mRNA-1
tig0019465	exon	66688	66793	66688	ID=Msa1374040-mRNA-1:exon:3687;Parent=Msa1374040-mRNA-1
tig0019465	exon	67416	67552	67416	ID=Msa1374040-mRNA-1:exon:3688;Parent=Msa1374040-mRNA-1
tig0019465	exon	67741	67824	67741	ID=Msa1374040-mRNA-1:exon:3689;Parent=Msa1374040-mRNA-1
tig0019465	exon	67908	68002	67908	ID=Msa1374040-mRNA-1:exon:3690;Parent=Msa1374040-mRNA-1
tig0019465	exon	68128	68236	68128	ID=Msa1374040-mRNA-1:exon:3691;Parent=Msa1374040-mRNA-1
tig0019465	exon	68372	68458	68372	ID=Msa1374040-mRNA-1:exon:3692;Parent=Msa1374040-mRNA-1
tig0019465	exon	68556	68648	68556	ID=Msa1374040-mRNA-1:exon:3693;Parent=Msa1374040-mRNA-1
tig0019465	exon	68837	69034	68837	ID=Msa1374040-mRNA-1:exon:3694;Parent=Msa1374040-mRNA-1
tig0019465	exon	69152	69297	69152	ID=Msa1374040-mRNA-1:exon:3695;Parent=Msa1374040-mRNA-1
tig0019465	exon	69379	69526	69379	ID=Msa1374040-mRNA-1:exon:3696;Parent=Msa1374040-mRNA-1
tig0019465	exon	69940	70038	69940	ID=Msa1374040-mRNA-1:exon:3697;Parent=Msa1374040-mRNA-1
tig0019465	exon	70131	70310	70131	ID=Msa1374040-mRNA-1:exon:3698;Parent=Msa1374040-mRNA-1
tig0019465	exon	70395	70482	70395	ID=Msa1374040-mRNA-1:exon:3699;Parent=Msa1374040-mRNA-1
tig0019465	exon	70598	71267	70598	ID=Msa1374040-mRNA-1:exon:3700;Parent=Msa1374040-mRNA-1
tig0019465	five_prime_UTR	65053	65122	65053	ID=Msa1374040-mRNA-1:five_prime_utr;Parent=Msa1374040-mRNA-1
tig0019465	CDS	65123	65176	65123	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	66297	66482	66297	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	66688	66793	66688	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	67416	67552	67416	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	67741	67824	67741	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	67908	68002	67908	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	68128	68236	68128	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	68372	68458	68372	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	68556	68648	68556	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	68837	69034	68837	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	69152	69297	69152	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	69379	69526	69379	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	69940	70038	69940	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	70131	70310	70131	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	70395	70482	70395	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	CDS	70598	70728	70598	ID=Msa1374040-mRNA-1:cds;Parent=Msa1374040-mRNA-1
tig0019465	three_prime_UTR	70729	71267	70729	ID=Msa1374040-mRNA-1:three_prime_utr;Parent=Msa1374040-mRNA-1

Gene Sequence

>Msa1374040

ATGACGGACGGTCATCTCTTCAACAACATTACCCTCGGCGGCCGTGGCGGCACCAATCCGGGGCAGATAAAAATATATTCTGGAGGAATTTTATGGAAGAGACAGGGAGGTGGCAAATCAATTGATGTTGATAAGGCGGACATAACGGGCGTAACATGGATGAAGGTTCCAAAGACAAATCAACTTGGTGTTCAGATCAAAGATGGGTTGTTCTACAAATTCACTGGTTTCCGTGATCAGGATGTTGTAAGCTTGACAAGTTTCTTCCAAAACACCTTCGGAGTAACTGTTGGGGAGAAGCAACTTTCTGTTACTGGGCGCAATTGGGGAGAAGTTGATCTAAACGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCCCAAACAAACCTTCAAGGGAAAAATGATGTGATGTTGGAGTTTCACGTGGATGACACAACTGGAGCAAATGAGAAAGATTCTTTGATGGAGATGAGTTTCCATGTACCAAGTTCCAATACCCAGTTTGTTGGTGATGAAGATCGCCCTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGAGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAATTACACTTGTCATTTTTGCGGCTTCAGGGACAGGCTAACGATTTCAAAATCCAGTACAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAGCCGCATACCTTCGTCATTATTAGTCTTGATCCTCCTATTCGGAAAGGGCAGACTTTGTACCCTCATATCGTGATGCAGTTTGAAACTGATTATGTGGTTGAAAGTGAATTGGCAATGAGTGAAGATCTTTATAACTCAAAGTACAAAGACAAGTTGGAGCTGTCTTACAAGGGGCTTATCCATGAAGTGTTTACCACAATATTGCGTGGTTTGTCCGGAGGCAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAGTCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTGCCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAACATGCATTACTTTGACCTTCTTATCAGACTCAAATCTGAGCAAGAGCATCTCTTCCGAAATATTCAGAGAAATGAATACCACAATTTGTATGGTTTTATCAGTTCTAAGGGCTTGAAAATTATGAATTTAGCTGATGCCCAACCAACTGTTGGTGTGGCCAAGGTGCTTGAGAATGATGATGATGATGCCGTCGATCCACATCTCGAGCGCATCAGAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCAGATTTTGTTCTCGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGTGCAGATGACTCTGATGCTAGCCAAAGTGGTGGTGAGACAGAGAAACCTGCCAAGAAGGAACCAAAGAAGGATTTGCCTTCTAAGGCATCTACTTCTAAGAAGAAATCAAAAGATGCTGATGACGAAGGAGGAGTGAAGAAGAAACAGAAGAAGAAAAAGGATCCAAATGCACCTAAGAGGGCACTGTCTGGTTTCATGTTCTTTTCTCAGATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGACGTGGGAAGAGTACTTGGAGAAAAATGGAAAAATCTGTCGGGTATGGCTGCGGAGGAGAAGGAACCTTATGAGGCCAAAGCCCAAGAAGATAAAAAGCGTTACAAGGATGAGATGAGTGGTTACAACAAGAATCCTCAACCCATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA

Protein sequence

>Msa1374040

MTDGHLFNNITLGGRGGTNPGQIKIYSGGILWKRQGGGKSIDVDKADITGVTWMKVPKTNQLGVQIKDGLFYKFTGFRDQDVVSLTSFFQNTFGVTVGEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVMLEFHVDDTTGANEKDSLMEMSFHVPSSNTQFVGDEDRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVESELAMSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGGKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNLADAQPTVGVAKVLENDDDDAVDPHLERIRNEAGGDESDEEDSDFVLDKDDGGSPTDDSGADDSDASQSGGETEKPAKKEPKKDLPSKASTSKKKSKDADDEGGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSGMAAEEKEPYEAKAQEDKKRYKDEMSGYNKNPQPMNIDSGNESDSA*