Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0702470 | 0.833475 | 5.221568e-56 | -8.615850e-47 |
| Msa0003700 | Msa0702470 | 0.823860 | 1.103452e-53 | -8.615850e-47 |
| Msa0044000 | Msa0702470 | 0.808653 | 2.785985e-50 | -8.615850e-47 |
| Msa0058490 | Msa0702470 | 0.804098 | 2.542754e-49 | -8.615850e-47 |
| Msa0058510 | Msa0702470 | 0.804165 | 2.462380e-49 | -8.615850e-47 |
| Msa0069330 | Msa0702470 | 0.810712 | 1.005857e-50 | -8.615850e-47 |
| Msa0104550 | Msa0702470 | 0.814337 | 1.622136e-51 | -8.615850e-47 |
| Msa0602870 | Msa0702470 | 0.806714 | 7.193336e-50 | -8.615850e-47 |
| Msa0615710 | Msa0702470 | 0.813971 | 1.953898e-51 | -8.615850e-47 |
| Msa0641190 | Msa0702470 | 0.800988 | 1.113273e-48 | -8.615850e-47 |
| Msa0643890 | Msa0702470 | 0.813869 | 2.057802e-51 | -8.615850e-47 |
| Msa0683730 | Msa0702470 | 0.806544 | 7.813486e-50 | -8.615850e-47 |
| Msa0702440 | Msa0702470 | 0.926065 | 7.811980e-91 | -8.615850e-47 |
| Msa0702470 | Msa0763020 | 0.831228 | 1.880590e-55 | -8.615850e-47 |
| Msa0702470 | Msa0763070 | 0.834522 | 2.854750e-56 | -8.615850e-47 |
| Msa0702470 | Msa0881460 | 0.802330 | 5.905213e-49 | -8.615850e-47 |
| Msa0702470 | Msa1081930 | 0.807301 | 5.405273e-50 | -8.615850e-47 |
| Msa0702470 | Msa1174040 | 0.808207 | 3.469572e-50 | -8.615850e-47 |
| Msa0702470 | Msa1190930 | 0.802170 | 6.368833e-49 | -8.615850e-47 |
| Msa0702470 | Msa1253020 | 0.814991 | 1.161911e-51 | -8.615850e-47 |
| Msa0702470 | Msa1256470 | 0.800068 | 1.714101e-48 | -8.615850e-47 |
| Msa0702470 | Msa1286800 | 0.803260 | 3.795690e-49 | -8.615850e-47 |
| Msa0702470 | Msa1367590 | 0.804231 | 2.385815e-49 | -8.615850e-47 |
| Msa0702470 | Msa1376650 | 0.807360 | 5.249635e-50 | -8.615850e-47 |
| Msa0702470 | Msa1377820 | 0.812157 | 4.881718e-51 | -8.615850e-47 |
| Msa0702470 | Msa1382540 | 0.822345 | 2.489553e-53 | -8.615850e-47 |
| Msa0702470 | Msa1433390 | 0.802705 | 4.941080e-49 | -8.615850e-47 |
| Msa0127800 | Msa0702470 | 0.809681 | 1.678177e-50 | -8.615850e-47 |
| Msa0220250 | Msa0702470 | 0.803987 | 2.681862e-49 | -8.615850e-47 |
| Msa0231980 | Msa0702470 | 0.816802 | 4.583917e-52 | -8.615850e-47 |
| Msa0232050 | Msa0702470 | 0.804009 | 2.653748e-49 | -8.615850e-47 |
| Msa0376310 | Msa0702470 | 0.801077 | 1.067220e-48 | -8.615850e-47 |
| Msa0380300 | Msa0702470 | 0.818324 | 2.080381e-52 | -8.615850e-47 |
| Msa0391690 | Msa0702470 | 0.814380 | 1.587147e-51 | -8.615850e-47 |
| Msa0346430 | Msa0702470 | 0.817096 | 3.937108e-52 | -8.615850e-47 |
| Msa0512750 | Msa0702470 | 0.802093 | 6.605360e-49 | -8.615850e-47 |
| Msa0524500 | Msa0702470 | 0.838382 | 2.973254e-57 | -8.615850e-47 |
| Msa0547160 | Msa0702470 | 0.804335 | 2.269793e-49 | -8.615850e-47 |
| Msa0547890 | Msa0702470 | 0.800521 | 1.386032e-48 | -8.615850e-47 |
| Msa0556060 | Msa0702470 | 0.804208 | 2.412626e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGTTGTTGTTTGGGTTGT+TGG | 0.206196 | 4_4:+74105053 | Msa0702470:CDS |
| CGCGGCTGGTGGTTGTTGTT+TGG | 0.226310 | 4_4:+74105045 | Msa0702470:CDS |
| GGCACTTGGTGGTTCAGTTT+TGG | 0.271381 | 4_4:+74104957 | Msa0702470:CDS |
| TCTGAACTTGGCTGCTTCTC+TGG | 0.282117 | 4_4:+74104782 | Msa0702470:CDS |
| TTGGGTTGTGGATCCAGTTT+TGG | 0.329080 | 4_4:+74104876 | Msa0702470:CDS |
| GCGGCTGGTGGTTGTTGTTT+GGG | 0.345102 | 4_4:+74105046 | Msa0702470:CDS |
| GTCATCACCAAACCCCTTCC+AGG | 0.351873 | 4_4:+74104748 | Msa0702470:CDS |
| GTGGGTTTGCGACCCATGTT+TGG | 0.352625 | 4_4:+74104857 | Msa0702470:CDS |
| TTCGGATCTGTCCGGACTCT+TGG | 0.357000 | 4_4:+74104828 | Msa0702470:CDS |
| AGAAAACCCTGGAAGGGGTT+TGG | 0.403011 | 4_4:-74104755 | None:intergenic |
| GTAAACTCAAGATCCAAAAC+TGG | 0.420910 | 4_4:-74104889 | None:intergenic |
| CTCTTCTTCGTCGGTGAGGG+AGG | 0.430698 | 4_4:+74104928 | Msa0702470:CDS |
| CTGTCCGGACTCTTGGTTTG+TGG | 0.435938 | 4_4:+74104835 | Msa0702470:CDS |
| CCGCCGCCGTTGGTGGTGTT+CGG | 0.437829 | 4_4:+74104810 | Msa0702470:CDS |
| TGCGACCCATGTTTGGGTTG+TGG | 0.438665 | 4_4:+74104864 | Msa0702470:CDS |
| CACCTCTTCTTCGTCGGTGA+GGG | 0.441642 | 4_4:+74104925 | Msa0702470:CDS |
| CGCCTACTGTTTGGTGTTGG+TGG | 0.444694 | 4_4:+74105013 | Msa0702470:CDS |
| CGTCGGTGAGGGAGGGTGGT+TGG | 0.445111 | 4_4:+74104936 | Msa0702470:CDS |
| GGAGGGTGGTTGGCACTTGG+TGG | 0.456364 | 4_4:+74104946 | Msa0702470:CDS |
| TGTTGTTCGTGATCAAAGAT+TGG | 0.462849 | 4_4:+74105135 | Msa0702470:CDS |
| GAGGGAGGGTGGTTGGCACT+TGG | 0.465408 | 4_4:+74104943 | Msa0702470:CDS |
| TCCGGACTCTTGGTTTGTGG+TGG | 0.465413 | 4_4:+74104838 | Msa0702470:CDS |
| GTTGTTGTTTGGGTTGTTGG+TGG | 0.466360 | 4_4:+74105056 | Msa0702470:CDS |
| CCGGACTCTTGGTTTGTGGT+GGG | 0.466578 | 4_4:+74104839 | Msa0702470:CDS |
| GGTGGAGCAACTGCCGCGGC+TGG | 0.468308 | 4_4:+74105031 | Msa0702470:CDS |
| GGTCTCGCCGCCGCCGTTGG+TGG | 0.470754 | 4_4:+74104803 | Msa0702470:CDS |
| TCTGGTCTCGCCGCCGCCGT+TGG | 0.480533 | 4_4:+74104800 | Msa0702470:CDS |
| TGGGTTTGCGACCCATGTTT+GGG | 0.487442 | 4_4:+74104858 | Msa0702470:CDS |
| AGAAGCAGCCAAGTTCAGAT+TGG | 0.492369 | 4_4:-74104778 | None:intergenic |
| GAGTTTGTGCGCCTACTGTT+TGG | 0.495338 | 4_4:+74105004 | Msa0702470:CDS |
| CCCACCACAAACCAAGAGTC+CGG | 0.515983 | 4_4:-74104839 | None:intergenic |
| CTGGATCCACAACCCAAACA+TGG | 0.517117 | 4_4:-74104870 | None:intergenic |
| CAAACAACAACCACCAGCCG+CGG | 0.525074 | 4_4:-74105044 | None:intergenic |
| CCGAACACCACCAACGGCGG+CGG | 0.526351 | 4_4:-74104810 | None:intergenic |
| GTGCGCCTACTGTTTGGTGT+TGG | 0.529177 | 4_4:+74105010 | Msa0702470:CDS |
| CTCCCTCACCGACGAAGAAG+AGG | 0.531471 | 4_4:-74104927 | None:intergenic |
| TTTGTGCACCTCTTCTTCGT+CGG | 0.537547 | 4_4:+74104919 | Msa0702470:CDS |
| GATTGGAGAAAACCCTGGAA+GGG | 0.539411 | 4_4:-74104761 | None:intergenic |
| TCTTCTTCGTCGGTGAGGGA+GGG | 0.540340 | 4_4:+74104929 | Msa0702470:CDS |
| TCTTCGTCGGTGAGGGAGGG+TGG | 0.542017 | 4_4:+74104932 | Msa0702470:CDS |
| GTTGTTCGTGATCAAAGATT+GGG | 0.543436 | 4_4:+74105136 | Msa0702470:CDS |
| ATTGGAGAAAACCCTGGAAG+GGG | 0.547109 | 4_4:-74104760 | None:intergenic |
| TGGTGGTGTTCGGATCTGTC+CGG | 0.558043 | 4_4:+74104820 | Msa0702470:CDS |
| GGAGCAACTGCCGCGGCTGG+TGG | 0.559416 | 4_4:+74105034 | Msa0702470:CDS |
| GCACCTCTTCTTCGTCGGTG+AGG | 0.566165 | 4_4:+74104924 | Msa0702470:CDS |
| CAGCGTCGACGACGAACCAC+TGG | 0.566575 | 4_4:-74105092 | None:intergenic |
| ACAGATCCGAACACCACCAA+CGG | 0.569454 | 4_4:-74104816 | None:intergenic |
| TCATCACCAAACCCCTTCCA+GGG | 0.570445 | 4_4:+74104749 | Msa0702470:CDS |
| TGTTATGCAACAAATGGCAA+TGG | 0.572039 | 4_4:+74101838 | None:intergenic |
| CAGTGGTTCGTCGTCGACGC+TGG | 0.580204 | 4_4:+74105093 | Msa0702470:CDS |
| AGATTGGAGAAAACCCTGGA+AGG | 0.580272 | 4_4:-74104762 | None:intergenic |
| TGGTGTTGCTGTGTTACCAG+TGG | 0.627914 | 4_4:+74105076 | Msa0702470:CDS |
| GTTCGTGATCAAAGATTGGG+TGG | 0.638453 | 4_4:+74105139 | Msa0702470:CDS |
| TGGATCCACAACCCAAACAT+GGG | 0.643461 | 4_4:-74104869 | None:intergenic |
| GTTCAGATTGGAGAAAACCC+TGG | 0.651450 | 4_4:-74104766 | None:intergenic |
| GATCCGAACACCACCAACGG+CGG | 0.654668 | 4_4:-74104813 | None:intergenic |
| CTCCACCAACACCAAACAGT+AGG | 0.659959 | 4_4:-74105015 | None:intergenic |
| TGTTGGTGGAGCAACTGCCG+CGG | 0.660907 | 4_4:+74105027 | Msa0702470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTAAATATTTAAA+TGG | - | chr4_4:74103209-74103228 | None:intergenic | 0.0% |
| !!! | TTAAATATTTAATTTTTTTT+TGG | + | chr4_4:74103210-74103229 | Msa0702470:intron | 0.0% |
| !!! | TGAGTAATTTTTATTTTTTA+AGG | + | chr4_4:74102227-74102246 | Msa0702470:intron | 10.0% |
| !!! | ACGTTTTTATTTAAATTTTT+AGG | + | chr4_4:74102727-74102746 | Msa0702470:intron | 10.0% |
| !! | ATATATATAAAGAAATGTAA+GGG | - | chr4_4:74103384-74103403 | None:intergenic | 10.0% |
| !! | AATATATATAAAGAAATGTA+AGG | - | chr4_4:74103385-74103404 | None:intergenic | 10.0% |
| !!! | TTTTGAATATCTAATGTTTT+GGG | - | chr4_4:74103152-74103171 | None:intergenic | 15.0% |
| !!! | TTTTGAATATCTAATGTTTT+GGG | - | chr4_4:74103152-74103171 | None:intergenic | 15.0% |
| !!! | TTATTATTTTTTTCGTTGAA+AGG | + | chr4_4:74103488-74103507 | Msa0702470:intron | 15.0% |
| !!! | ATTTTTTTATCTCTACTTTT+TGG | - | chr4_4:74104145-74104164 | None:intergenic | 15.0% |
| !! | AACTCAAATGATTAAATTTA+AGG | - | chr4_4:74104168-74104187 | None:intergenic | 15.0% |
| !!! | AAATTTTTAAGTATGAAAGA+TGG | + | chr4_4:74104274-74104293 | Msa0702470:intron | 15.0% |
| !!! | ACCTTTTCTTCTATAAAAAA+GGG | - | chr4_4:74102084-74102103 | None:intergenic | 20.0% |
| !!! | AACCTTTTCTTCTATAAAAA+AGG | - | chr4_4:74102085-74102104 | None:intergenic | 20.0% |
| !!! | ATAATTTTGGAGTTTTTTGT+CGG | + | chr4_4:74102464-74102483 | Msa0702470:intron | 20.0% |
| !! | TGTAGTATACTTTCTTAATT+AGG | - | chr4_4:74102593-74102612 | None:intergenic | 20.0% |
| !!! | ATTAAGAAAGTATACTACAT+AGG | + | chr4_4:74102594-74102613 | Msa0702470:intron | 20.0% |
| !!! | AATTGCTAATTTTTTGCTTT+TGG | + | chr4_4:74102837-74102856 | Msa0702470:intron | 20.0% |
| !! | TTAAGTCTTTCATACTATTA+AGG | + | chr4_4:74102921-74102940 | Msa0702470:intron | 20.0% |
| !! | GGACTAAAATGAATATTATA+AGG | + | chr4_4:74103040-74103059 | Msa0702470:intron | 20.0% |
| !! | AAAATCCATTTGTACAAAAT+TGG | - | chr4_4:74103067-74103086 | None:intergenic | 20.0% |
| !!! | CTTTTGAATATCTAATGTTT+TGG | - | chr4_4:74103153-74103172 | None:intergenic | 20.0% |
| !!! | CTTTTGAATATCTAATGTTT+TGG | - | chr4_4:74103153-74103172 | None:intergenic | 20.0% |
| !! | AAGTAGAAAAAAAACTACAA+TGG | + | chr4_4:74103519-74103538 | Msa0702470:intron | 20.0% |
| !! | AGTAGAAAAAAAACTACAAT+GGG | + | chr4_4:74103520-74103539 | Msa0702470:intron | 20.0% |
| !!! | AATTCGTGAACATTTTATTT+TGG | + | chr4_4:74104231-74104250 | Msa0702470:intron | 20.0% |
| !! | TAAATAACACAACCAATTTA+AGG | - | chr4_4:74104358-74104377 | None:intergenic | 20.0% |
| !!! | TTTTTTCAACATAACATTGA+CGG | + | chr4_4:74104425-74104444 | Msa0702470:intron | 20.0% |
| !!! | TTAGATTAGTTTATTCAGTT+TGG | - | chr4_4:74104551-74104570 | None:intergenic | 20.0% |
| !!! | ACCCTTTTTTATAGAAGAAA+AGG | + | chr4_4:74102080-74102099 | Msa0702470:intron | 25.0% |
| ! | TCTAGTACTCATATTTCAAA+AGG | - | chr4_4:74102108-74102127 | None:intergenic | 25.0% |
| !!! | TTTTGAAATATGAGTACTAG+AGG | + | chr4_4:74102107-74102126 | Msa0702470:intron | 25.0% |
| ! | TACTAGAGGTTAAATTTCAT+CGG | + | chr4_4:74102121-74102140 | Msa0702470:intron | 25.0% |
| ! | TTGACAAGAGTTATTCATAA+AGG | + | chr4_4:74102323-74102342 | Msa0702470:intron | 25.0% |
| !!! | GGCATTTGACTTAATAATTT+TGG | + | chr4_4:74102451-74102470 | Msa0702470:intron | 25.0% |
| !! | TTTTGTGAGTTCAACTTTTT+AGG | + | chr4_4:74102671-74102690 | Msa0702470:intron | 25.0% |
| ! | AAAAACGTTTGATATGTACA+AGG | - | chr4_4:74102715-74102734 | None:intergenic | 25.0% |
| !!! | TTCATTTTAGTCCTTTTTTG+TGG | - | chr4_4:74103033-74103052 | None:intergenic | 25.0% |
| !!! | TTTGTACAAATGGATTTTAC+AGG | + | chr4_4:74103069-74103088 | Msa0702470:intron | 25.0% |
| !!! | TTGTACAAATGGATTTTACA+GGG | + | chr4_4:74103070-74103089 | Msa0702470:intron | 25.0% |
| ! | CAAAAGATTATACATTTGCA+AGG | + | chr4_4:74103120-74103139 | Msa0702470:intron | 25.0% |
| !!! | TATTTTTTTCGTTGAAAGGT+AGG | + | chr4_4:74103492-74103511 | Msa0702470:intron | 25.0% |
| !!! | ATTTTTTTCGTTGAAAGGTA+GGG | + | chr4_4:74103493-74103512 | Msa0702470:intron | 25.0% |
| !!! | AATCGTGTGTTATTTCTTAT+TGG | + | chr4_4:74103696-74103715 | Msa0702470:intron | 25.0% |
| !! | TTTCAAATAACTCTCTAAAG+CGG | - | chr4_4:74103755-74103774 | None:intergenic | 25.0% |
| ! | TATTACATGACACTTCAATT+AGG | + | chr4_4:74103895-74103914 | Msa0702470:intron | 25.0% |
| ! | ATTACATGACACTTCAATTA+GGG | + | chr4_4:74103896-74103915 | Msa0702470:intron | 25.0% |
| !!! | AGTTTCATGATTTTAGTCTT+AGG | + | chr4_4:74104184-74104203 | Msa0702470:intron | 25.0% |
| !! | GTTTCTAATAGTTTGTCAAT+TGG | + | chr4_4:74104206-74104225 | Msa0702470:intron | 25.0% |
| !!! | TTTTATTTTGGTTTTCGTGT+TGG | + | chr4_4:74104243-74104262 | Msa0702470:intron | 25.0% |
| ! | GACTTATTAGTAACATAGTT+TGG | + | chr4_4:74104329-74104348 | Msa0702470:intron | 25.0% |
| ! | ATTGAGTCTTTAGATTCATT+AGG | - | chr4_4:74104485-74104504 | None:intergenic | 25.0% |
| !! | TTCATATATTTTTCCAAGCT+CGG | + | chr4_4:74104523-74104542 | Msa0702470:intron | 25.0% |
| ACTTTCGAATCTGTATGATA+TGG | - | chr4_4:74102058-74102077 | None:intergenic | 30.0% | |
| ACAAGAGTTATTCATAAAGG+AGG | + | chr4_4:74102326-74102345 | Msa0702470:intron | 30.0% | |
| CAAGAGTTATTCATAAAGGA+GGG | + | chr4_4:74102327-74102346 | Msa0702470:intron | 30.0% | |
| AAGAGTTATTCATAAAGGAG+GGG | + | chr4_4:74102328-74102347 | Msa0702470:intron | 30.0% | |
| GTCGGTTGAATTAAGAATTA+TGG | + | chr4_4:74102482-74102501 | Msa0702470:intron | 30.0% | |
| !! | ATTTTAGTCCTTTTTTGTGG+TGG | - | chr4_4:74103030-74103049 | None:intergenic | 30.0% |
| ! | AAGGACCAATTTTGTACAAA+TGG | + | chr4_4:74103059-74103078 | Msa0702470:intron | 30.0% |
| GGGATTAAAACAAAATGTCA+AGG | + | chr4_4:74103090-74103109 | Msa0702470:intron | 30.0% | |
| !! | GGTTGTTTTATGAGTTTTGT+CGG | - | chr4_4:74103546-74103565 | None:intergenic | 30.0% |
| !! | TCGTTATTTTCACGAAACTA+TGG | - | chr4_4:74103567-74103586 | None:intergenic | 30.0% |
| CAACTAAATTGCTTATTGTG+AGG | - | chr4_4:74103822-74103841 | None:intergenic | 30.0% | |
| CTCACAATAAGCAATTTAGT+TGG | + | chr4_4:74103820-74103839 | Msa0702470:intron | 30.0% | |
| CTTTACAATCATTGCATAGA+TGG | - | chr4_4:74103864-74103883 | None:intergenic | 30.0% | |
| CATCTATGCAATGATTGTAA+AGG | + | chr4_4:74103862-74103881 | Msa0702470:intron | 30.0% | |
| TTTAGTCTCTCTTCTATGTA+AGG | + | chr4_4:74103954-74103973 | Msa0702470:intron | 30.0% | |
| TTAGTCTCTCTTCTATGTAA+GGG | + | chr4_4:74103955-74103974 | Msa0702470:intron | 30.0% | |
| AAAAGAAGAGTTTATTGACC+TGG | - | chr4_4:74104076-74104095 | None:intergenic | 30.0% | |
| ATGAAAGATGGATGTTTGAA+TGG | + | chr4_4:74104286-74104305 | Msa0702470:intron | 30.0% | |
| !! | ATAGTTTGGTGTCCTTAAAT+TGG | + | chr4_4:74104343-74104362 | Msa0702470:intron | 30.0% |
| ! | TCATATATTTTTCCAAGCTC+GGG | + | chr4_4:74104524-74104543 | Msa0702470:intron | 30.0% |
| !!! | TTCCAATGTTGCTTTTGACA+TGG | + | chr4_4:74101890-74101909 | Msa0702470:intron | 35.0% |
| ! | GCTTCATTGGTGATTCATAT+TGG | + | chr4_4:74101916-74101935 | Msa0702470:intron | 35.0% |
| TCGAATCTGTATGATATGGT+TGG | - | chr4_4:74102054-74102073 | None:intergenic | 35.0% | |
| AGAGTTATTCATAAAGGAGG+GGG | + | chr4_4:74102329-74102348 | Msa0702470:intron | 35.0% | |
| ACATAGACAAGTAGAGAAGT+TGG | + | chr4_4:74102410-74102429 | Msa0702470:intron | 35.0% | |
| CATAGACAAGTAGAGAAGTT+GGG | + | chr4_4:74102411-74102430 | Msa0702470:intron | 35.0% | |
| ! | TGGGTTTCAAATCTCGATTT+TGG | + | chr4_4:74102430-74102449 | Msa0702470:intron | 35.0% |
| GACAATGCATGAAATATGCA+AGG | + | chr4_4:74102985-74103004 | Msa0702470:intron | 35.0% | |
| TGCATGAAATATGCAAGGTT+CGG | + | chr4_4:74102990-74103009 | Msa0702470:intron | 35.0% | |
| TAGGGATAATACGATGAGTT+AGG | + | chr4_4:74103914-74103933 | Msa0702470:intron | 35.0% | |
| ATTCGCCACTATTAGTTGAT+AGG | + | chr4_4:74103994-74104013 | Msa0702470:intron | 35.0% | |
| TTGGACCTATCAACTAATAG+TGG | - | chr4_4:74104002-74104021 | None:intergenic | 35.0% | |
| !! | GTTATTTTACTGGGATAGGT+TGG | - | chr4_4:74104021-74104040 | None:intergenic | 35.0% |
| GATTCATTAGGTCATTGCTT+TGG | - | chr4_4:74104473-74104492 | None:intergenic | 35.0% | |
| TAATCTAATCCGACCTCAAT+CGG | + | chr4_4:74104563-74104582 | Msa0702470:intron | 35.0% | |
| AAAAAGTTAGAGAGAGAGAG+TGG | - | chr4_4:74104606-74104625 | None:intergenic | 35.0% | |
| TGTTGGGGTTAAAGGTTATA+CGG | - | chr4_4:74104667-74104686 | None:intergenic | 35.0% | |
| TGTAGAAGGATTTGGATGTT+GGG | - | chr4_4:74104683-74104702 | None:intergenic | 35.0% | |
| GTAAACTCAAGATCCAAAAC+TGG | - | chr4_4:74104892-74104911 | None:intergenic | 35.0% | |
| TGTTGTTCGTGATCAAAGAT+TGG | + | chr4_4:74105135-74105154 | Msa0702470:CDS | 35.0% | |
| GTTGTTCGTGATCAAAGATT+GGG | + | chr4_4:74105136-74105155 | Msa0702470:CDS | 35.0% | |
| !! | GGCAATGGTATTGGCTTATT+AGG | + | chr4_4:74101853-74101872 | Msa0702470:intron | 40.0% |
| CACCATGTCAAAAGCAACAT+TGG | - | chr4_4:74101895-74101914 | None:intergenic | 40.0% | |
| TTTGACATGGTGTGCTTCAT+TGG | + | chr4_4:74101903-74101922 | Msa0702470:intron | 40.0% | |
| TGTGCATATTGCGATTGTAG+TGG | + | chr4_4:74102011-74102030 | Msa0702470:intron | 40.0% | |
| !! | CTTTAGAATTGTGCGAACGT+GGG | + | chr4_4:74102557-74102576 | Msa0702470:intron | 40.0% |
| GCATGAAATATGCAAGGTTC+GGG | + | chr4_4:74102991-74103010 | Msa0702470:intron | 40.0% | |
| CATGAAATATGCAAGGTTCG+GGG | + | chr4_4:74102992-74103011 | Msa0702470:intron | 40.0% | |
| !!! | TAGTCCTTTTTTGTGGTGGT+CGG | - | chr4_4:74103026-74103045 | None:intergenic | 40.0% |
| CAATGACACGTTTATCACTG+AGG | + | chr4_4:74103234-74103253 | Msa0702470:intron | 40.0% | |
| CCTATCCCAGTAAAATAACG+CGG | + | chr4_4:74104022-74104041 | Msa0702470:intron | 40.0% | |
| ! | ACTAGTATACCGATTGAGGT+CGG | - | chr4_4:74104575-74104594 | None:intergenic | 40.0% |
| AAGTTGTAGAGAGAGGTTAG+AGG | - | chr4_4:74104630-74104649 | None:intergenic | 40.0% | |
| GATTTGGATGTTGGGGTTAA+AGG | - | chr4_4:74104675-74104694 | None:intergenic | 40.0% | |
| GTAGAAGGATTTGGATGTTG+GGG | - | chr4_4:74104682-74104701 | None:intergenic | 40.0% | |
| CTGTAGAAGGATTTGGATGT+TGG | - | chr4_4:74104684-74104703 | None:intergenic | 40.0% | |
| TACATGGCTGTAGAAGGATT+TGG | - | chr4_4:74104691-74104710 | None:intergenic | 40.0% | |
| ! | GGTTTTCTCCAATCTGAACT+TGG | + | chr4_4:74104770-74104789 | Msa0702470:CDS | 40.0% |
| !! | GCTTTAGAATTGTGCGAACG+TGG | + | chr4_4:74102556-74102575 | Msa0702470:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | + | chr4_4:74102963-74102982 | Msa0702470:intron | 45.0% |
| AATCCCGACCACCACAAAAA+AGG | + | chr4_4:74103019-74103038 | Msa0702470:intron | 45.0% | |
| !!! | AGTCCTTTTTTGTGGTGGTC+GGG | - | chr4_4:74103025-74103044 | None:intergenic | 45.0% |
| CGTTTATCACTGAGGAAAGC+TGG | + | chr4_4:74103242-74103261 | Msa0702470:intron | 45.0% | |
| ATACGATGAGTTAGGTCCAC+TGG | + | chr4_4:74103922-74103941 | Msa0702470:intron | 45.0% | |
| GACTAAACAGATCGATCCAG+TGG | - | chr4_4:74103941-74103960 | None:intergenic | 45.0% | |
| !! | CCGCGTTATTTTACTGGGAT+AGG | - | chr4_4:74104025-74104044 | None:intergenic | 45.0% |
| ATCCCAGTAAAATAACGCGG+TGG | + | chr4_4:74104025-74104044 | Msa0702470:intron | 45.0% | |
| !! | CTCCACCGCGTTATTTTACT+GGG | - | chr4_4:74104030-74104049 | None:intergenic | 45.0% |
| ! | ACATTGACGGATCAACCCTA+TGG | + | chr4_4:74104438-74104457 | Msa0702470:intron | 45.0% |
| ! | CATTGACGGATCAACCCTAT+GGG | + | chr4_4:74104439-74104458 | Msa0702470:intron | 45.0% |
| !! | CTTTGGCTCTTACACCCATA+GGG | - | chr4_4:74104456-74104475 | None:intergenic | 45.0% |
| GACCTCAATCGGTATACTAG+TGG | + | chr4_4:74104574-74104593 | Msa0702470:intron | 45.0% | |
| ! | CACCACTAGTATACCGATTG+AGG | - | chr4_4:74104579-74104598 | None:intergenic | 45.0% |
| GAAGGGAAAGTTGTAGAGAG+AGG | - | chr4_4:74104637-74104656 | None:intergenic | 45.0% | |
| TGGGGTTAAAGGTTATACGG+CGG | - | chr4_4:74104664-74104683 | None:intergenic | 45.0% | |
| AGCCATGTAGCTACCACTTA+TGG | + | chr4_4:74104702-74104721 | Msa0702470:intron | 45.0% | |
| CACCATAAGTGGTAGCTACA+TGG | - | chr4_4:74104707-74104726 | None:intergenic | 45.0% | |
| ATTGGAGAAAACCCTGGAAG+GGG | - | chr4_4:74104763-74104782 | None:intergenic | 45.0% | |
| GATTGGAGAAAACCCTGGAA+GGG | - | chr4_4:74104764-74104783 | None:intergenic | 45.0% | |
| AGATTGGAGAAAACCCTGGA+AGG | - | chr4_4:74104765-74104784 | None:intergenic | 45.0% | |
| GTTCAGATTGGAGAAAACCC+TGG | - | chr4_4:74104769-74104788 | None:intergenic | 45.0% | |
| AGAAGCAGCCAAGTTCAGAT+TGG | - | chr4_4:74104781-74104800 | None:intergenic | 45.0% | |
| TGGATCCACAACCCAAACAT+GGG | - | chr4_4:74104872-74104891 | None:intergenic | 45.0% | |
| !! | TTGGGTTGTGGATCCAGTTT+TGG | + | chr4_4:74104876-74104895 | Msa0702470:CDS | 45.0% |
| TTTGTGCACCTCTTCTTCGT+CGG | + | chr4_4:74104919-74104938 | Msa0702470:CDS | 45.0% | |
| !! | GTGGTTGTTGTTTGGGTTGT+TGG | + | chr4_4:74105053-74105072 | Msa0702470:CDS | 45.0% |
| !! | GTTGTTGTTTGGGTTGTTGG+TGG | + | chr4_4:74105056-74105075 | Msa0702470:CDS | 45.0% |
| GTTCGTGATCAAAGATTGGG+TGG | + | chr4_4:74105139-74105158 | Msa0702470:CDS | 45.0% | |
| !!! | ATTAATTTTTTTTATTCAAT+AGG | + | chr4_4:74102520-74102539 | Msa0702470:intron | 5.0% |
| !! | AAAAAAATAAAATAAATAAC+TGG | - | chr4_4:74103613-74103632 | None:intergenic | 5.0% |
| !!! | ATAAAATAAATGAATAATTT+TGG | + | chr4_4:74103658-74103677 | Msa0702470:intron | 5.0% |
| !! | CCTCCACCGCGTTATTTTAC+TGG | - | chr4_4:74104031-74104050 | None:intergenic | 50.0% |
| CCAGTAAAATAACGCGGTGG+AGG | + | chr4_4:74104028-74104047 | Msa0702470:intron | 50.0% | |
| TAAAATAACGCGGTGGAGGC+AGG | + | chr4_4:74104032-74104051 | Msa0702470:intron | 50.0% | |
| AAAATAACGCGGTGGAGGCA+GGG | + | chr4_4:74104033-74104052 | Msa0702470:intron | 50.0% | |
| !! | GCTTTGGCTCTTACACCCAT+AGG | - | chr4_4:74104457-74104476 | None:intergenic | 50.0% |
| ATTCAGTTTGGACCCGAGCT+TGG | - | chr4_4:74104539-74104558 | None:intergenic | 50.0% | |
| GGTTAAAGGTTATACGGCGG+TGG | - | chr4_4:74104661-74104680 | None:intergenic | 50.0% | |
| GGTAGCTACATGGCTGTAGA+AGG | - | chr4_4:74104697-74104716 | None:intergenic | 50.0% | |
| GCTGAACGCATCACCATAAG+TGG | - | chr4_4:74104718-74104737 | None:intergenic | 50.0% | |
| TCATCACCAAACCCCTTCCA+GGG | + | chr4_4:74104749-74104768 | Msa0702470:CDS | 50.0% | |
| AGAAAACCCTGGAAGGGGTT+TGG | - | chr4_4:74104758-74104777 | None:intergenic | 50.0% | |
| TCTGAACTTGGCTGCTTCTC+TGG | + | chr4_4:74104782-74104801 | Msa0702470:CDS | 50.0% | |
| ACAGATCCGAACACCACCAA+CGG | - | chr4_4:74104819-74104838 | None:intergenic | 50.0% | |
| TGGGTTTGCGACCCATGTTT+GGG | + | chr4_4:74104858-74104877 | Msa0702470:CDS | 50.0% | |
| CTGGATCCACAACCCAAACA+TGG | - | chr4_4:74104873-74104892 | None:intergenic | 50.0% | |
| !! | GGCACTTGGTGGTTCAGTTT+TGG | + | chr4_4:74104957-74104976 | Msa0702470:CDS | 50.0% |
| GAGTTTGTGCGCCTACTGTT+TGG | + | chr4_4:74105004-74105023 | Msa0702470:CDS | 50.0% | |
| CTCCACCAACACCAAACAGT+AGG | - | chr4_4:74105018-74105037 | None:intergenic | 50.0% | |
| !! | TGGTGTTGCTGTGTTACCAG+TGG | + | chr4_4:74105076-74105095 | Msa0702470:CDS | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr4_4:74102961-74102980 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr4_4:74102958-74102977 | Msa0702470:intron | 55.0% | |
| GGTTATACGGCGGTGGTGAA+GGG | - | chr4_4:74104654-74104673 | None:intergenic | 55.0% | |
| AGGTTATACGGCGGTGGTGA+AGG | - | chr4_4:74104655-74104674 | None:intergenic | 55.0% | |
| GTCATCACCAAACCCCTTCC+AGG | + | chr4_4:74104748-74104767 | Msa0702470:CDS | 55.0% | |
| ! | TGGTGGTGTTCGGATCTGTC+CGG | + | chr4_4:74104820-74104839 | Msa0702470:CDS | 55.0% |
| TTCGGATCTGTCCGGACTCT+TGG | + | chr4_4:74104828-74104847 | Msa0702470:CDS | 55.0% | |
| ! | CTGTCCGGACTCTTGGTTTG+TGG | + | chr4_4:74104835-74104854 | Msa0702470:CDS | 55.0% |
| !! | TCCGGACTCTTGGTTTGTGG+TGG | + | chr4_4:74104838-74104857 | Msa0702470:CDS | 55.0% |
| CCCACCACAAACCAAGAGTC+CGG | - | chr4_4:74104842-74104861 | None:intergenic | 55.0% | |
| !! | CCGGACTCTTGGTTTGTGGT+GGG | + | chr4_4:74104839-74104858 | Msa0702470:CDS | 55.0% |
| GTGGGTTTGCGACCCATGTT+TGG | + | chr4_4:74104857-74104876 | Msa0702470:CDS | 55.0% | |
| !! | TGCGACCCATGTTTGGGTTG+TGG | + | chr4_4:74104864-74104883 | Msa0702470:CDS | 55.0% |
| CACCTCTTCTTCGTCGGTGA+GGG | + | chr4_4:74104925-74104944 | Msa0702470:CDS | 55.0% | |
| TCTTCTTCGTCGGTGAGGGA+GGG | + | chr4_4:74104929-74104948 | Msa0702470:CDS | 55.0% | |
| !! | GTGCGCCTACTGTTTGGTGT+TGG | + | chr4_4:74105010-74105029 | Msa0702470:CDS | 55.0% |
| !! | CGCCTACTGTTTGGTGTTGG+TGG | + | chr4_4:74105013-74105032 | Msa0702470:CDS | 55.0% |
| CAAACAACAACCACCAGCCG+CGG | - | chr4_4:74105047-74105066 | None:intergenic | 55.0% | |
| !! | GCGGCTGGTGGTTGTTGTTT+GGG | + | chr4_4:74105046-74105065 | Msa0702470:CDS | 55.0% |
| GATCCGAACACCACCAACGG+CGG | - | chr4_4:74104816-74104835 | None:intergenic | 60.0% | |
| GCACCTCTTCTTCGTCGGTG+AGG | + | chr4_4:74104924-74104943 | Msa0702470:CDS | 60.0% | |
| CTCCCTCACCGACGAAGAAG+AGG | - | chr4_4:74104930-74104949 | None:intergenic | 60.0% | |
| CTCTTCTTCGTCGGTGAGGG+AGG | + | chr4_4:74104928-74104947 | Msa0702470:CDS | 60.0% | |
| ! | TGTTGGTGGAGCAACTGCCG+CGG | + | chr4_4:74105027-74105046 | Msa0702470:CDS | 60.0% |
| ! | CGCGGCTGGTGGTTGTTGTT+TGG | + | chr4_4:74105045-74105064 | Msa0702470:CDS | 60.0% |
| ATAACGCGGTGGAGGCAGGG+CGG | + | chr4_4:74104036-74104055 | Msa0702470:intron | 65.0% | |
| TCTTCGTCGGTGAGGGAGGG+TGG | + | chr4_4:74104932-74104951 | Msa0702470:CDS | 65.0% | |
| GAGGGAGGGTGGTTGGCACT+TGG | + | chr4_4:74104943-74104962 | Msa0702470:CDS | 65.0% | |
| GGAGGGTGGTTGGCACTTGG+TGG | + | chr4_4:74104946-74104965 | Msa0702470:CDS | 65.0% | |
| !! | CAGCGTCGACGACGAACCAC+TGG | - | chr4_4:74105095-74105114 | None:intergenic | 65.0% |
| CAGTGGTTCGTCGTCGACGC+TGG | + | chr4_4:74105093-74105112 | Msa0702470:CDS | 65.0% | |
| TAACGCGGTGGAGGCAGGGC+GGG | + | chr4_4:74104037-74104056 | Msa0702470:intron | 70.0% | |
| !! | GCGGGGCTAGCTGGCATTCC+AGG | + | chr4_4:74104055-74104074 | Msa0702470:intron | 70.0% |
| CCGAACACCACCAACGGCGG+CGG | - | chr4_4:74104813-74104832 | None:intergenic | 70.0% | |
| !! | CCGCCGCCGTTGGTGGTGTT+CGG | + | chr4_4:74104810-74104829 | Msa0702470:CDS | 70.0% |
| CGTCGGTGAGGGAGGGTGGT+TGG | + | chr4_4:74104936-74104955 | Msa0702470:CDS | 70.0% | |
| AACGCGGTGGAGGCAGGGCG+GGG | + | chr4_4:74104038-74104057 | Msa0702470:intron | 75.0% | |
| TCTGGTCTCGCCGCCGCCGT+TGG | + | chr4_4:74104800-74104819 | Msa0702470:CDS | 75.0% | |
| GGTGGAGCAACTGCCGCGGC+TGG | + | chr4_4:74105031-74105050 | Msa0702470:CDS | 75.0% | |
| GGAGCAACTGCCGCGGCTGG+TGG | + | chr4_4:74105034-74105053 | Msa0702470:CDS | 75.0% | |
| !! | GGAGGCAGGGCGGGGCTAGC+TGG | + | chr4_4:74104046-74104065 | Msa0702470:intron | 80.0% |
| ! | GGTCTCGCCGCCGCCGTTGG+TGG | + | chr4_4:74104803-74104822 | Msa0702470:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 74101851 | 74105165 | 74101851 | ID=Msa0702470;Name=Msa0702470 |
| chr4_4 | mRNA | 74101851 | 74105165 | 74101851 | ID=Msa0702470-mRNA-1;Parent=Msa0702470;Name=Msa0702470-mRNA-1;_AED=0.99;_eAED=1.00;_QI=0|0|0|0.5|1|0.5|2|0|145 |
| chr4_4 | exon | 74101851 | 74101859 | 74101851 | ID=Msa0702470-mRNA-1:exon:22990;Parent=Msa0702470-mRNA-1 |
| chr4_4 | exon | 74104737 | 74105165 | 74104737 | ID=Msa0702470-mRNA-1:exon:22991;Parent=Msa0702470-mRNA-1 |
| chr4_4 | CDS | 74101851 | 74101859 | 74101851 | ID=Msa0702470-mRNA-1:cds;Parent=Msa0702470-mRNA-1 |
| chr4_4 | CDS | 74104737 | 74105165 | 74104737 | ID=Msa0702470-mRNA-1:cds;Parent=Msa0702470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
