AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1418990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418990 MtrunA17_Chr1g0152571 97.808 730 16 0 1 730 1 730 0.0 1495
Msa1418990 MtrunA17_Chr2g0299161 79.178 730 147 2 1 730 2 726 0.0 1232
Msa1418990 MtrunA17_Chr8g0342001 68.552 725 224 3 7 729 1 723 0.0 1079
Msa1418990 MtrunA17_Chr2g0330291 70.904 708 202 3 24 729 21 726 0.0 1061
Msa1418990 MtrunA17_Chr8g0372421 61.944 720 270 4 13 730 10 727 0.0 964
Msa1418990 MtrunA17_Chr3g0142001 63.056 720 261 4 14 730 9 726 0.0 962
Msa1418990 MtrunA17_Chr1g0155701 63.262 705 254 5 27 729 25 726 0.0 958
Msa1418990 MtrunA17_Chr5g0404841 61.970 731 269 7 2 730 1 724 0.0 952
Msa1418990 MtrunA17_Chr2g0326481 59.254 724 274 8 17 729 6 719 0.0 866
Msa1418990 MtrunA17_Chr4g0029301 56.868 728 285 9 17 726 6 722 0.0 827
Msa1418990 MtrunA17_Chr3g0130711 54.910 723 312 6 18 729 14 733 0.0 786
Msa1418990 MtrunA17_Chr8g0378221 50.931 752 320 10 17 726 30 774 0.0 758
Msa1418990 MtrunA17_Chr3g0124931 50.621 725 307 17 10 726 6 687 0.0 679
Msa1418990 MtrunA17_Chr3g0130721 50.622 723 314 13 13 726 10 698 0.0 676
Msa1418990 MtrunA17_Chr5g0408371 49.083 709 345 10 31 730 28 729 0.0 674
Msa1418990 MtrunA17_Chr5g0406921 48.515 707 347 10 31 726 28 728 0.0 672
Msa1418990 MtrunA17_Chr2g0301001 49.579 712 336 13 31 726 27 731 0.0 662
Msa1418990 MtrunA17_Chr4g0037031 45.691 731 363 12 4 727 8 711 0.0 652
Msa1418990 MtrunA17_Chr3g0077531 46.492 727 363 12 13 722 5 722 0.0 650
Msa1418990 MtrunA17_Chr3g0145581 45.851 711 346 14 24 727 29 707 0.0 631
Msa1418990 MtrunA17_Chr2g0326491 57.700 513 163 5 17 477 6 516 0.0 605
Msa1418990 MtrunA17_Chr2g0326441 68.794 282 86 1 17 296 6 287 4.28e-146 429
Msa1418990 MtrunA17_Chr2g0326451 51.914 418 178 8 325 729 23 430 3.59e-131 399
Msa1418990 MtrunA17_Chr4g0071281 54.110 292 84 2 430 721 2 243 8.18e-99 305
Msa1418990 MtrunA17_Chr2g0326521 46.479 213 84 5 521 729 7 193 7.15e-51 179
Msa1418990 MtrunA17_Chr4g0071291 59.091 132 22 1 27 158 18 117 6.22e-47 163
Msa1418990 MtrunA17_Chr8g0372581 53.191 141 45 2 152 291 9 129 1.96e-44 156
Msa1418990 MtrunA17_Chr5g0405781 45.503 189 78 3 179 367 48 211 1.91e-41 154
Msa1418990 MtrunA17_Chr2g0330191 32.622 328 184 9 41 339 64 383 4.91e-33 135
Msa1418990 MtrunA17_Chr2g0307981 30.970 268 149 7 455 718 56 291 8.83e-29 117
Msa1418990 MtrunA17_Chr4g0021711 73.333 45 11 1 152 196 47 90 1.15e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418990 AT4G26140.1 70.069 725 210 6 8 730 7 726 0.0 1098
Msa1418990 AT4G26140.7 67.867 750 209 7 8 730 7 751 0.0 1083
Msa1418990 AT5G56870.1 71.053 722 204 5 9 730 8 724 0.0 1068
Msa1418990 AT3G52840.2 67.350 732 232 4 3 730 51 779 0.0 1066
Msa1418990 AT3G13750.1 69.091 715 217 3 17 729 20 732 0.0 1064
Msa1418990 AT3G52840.1 68.627 714 221 3 17 730 15 725 0.0 1062
Msa1418990 AT4G26140.9 67.598 716 200 7 8 696 7 717 0.0 1026
Msa1418990 AT4G36360.2 62.901 717 258 5 16 730 22 732 0.0 968
Msa1418990 AT4G36360.1 62.901 717 258 5 16 730 22 732 0.0 968
Msa1418990 AT1G45130.1 62.691 721 261 5 16 730 12 730 0.0 959
Msa1418990 AT4G26140.3 70.806 620 176 5 8 627 7 621 0.0 936
Msa1418990 AT4G26140.2 70.806 620 176 5 8 627 7 621 0.0 936
Msa1418990 AT4G26140.6 70.579 622 176 6 8 627 7 623 0.0 931
Msa1418990 AT2G28470.1 59.777 716 269 8 26 729 27 735 0.0 881
Msa1418990 AT2G28470.3 59.777 716 269 8 26 729 27 735 0.0 881
Msa1418990 AT2G28470.2 59.777 716 269 8 26 729 21 729 0.0 880
Msa1418990 AT2G28470.4 59.777 716 269 8 26 729 21 729 0.0 880
Msa1418990 AT1G45130.2 61.778 641 241 4 92 730 13 651 0.0 847
Msa1418990 AT2G28470.5 59.531 682 257 8 25 694 26 700 0.0 830
Msa1418990 AT4G26140.8 71.350 548 150 6 8 553 7 549 0.0 827
Msa1418990 AT4G26140.4 68.412 573 149 7 8 553 7 574 0.0 814
Msa1418990 AT4G26140.5 68.412 573 149 7 8 553 7 574 0.0 814
Msa1418990 AT5G63810.1 54.608 727 316 6 13 729 14 736 0.0 795
Msa1418990 AT2G32810.1 51.974 760 326 11 1 726 1 755 0.0 774
Msa1418990 AT2G32810.2 51.974 760 326 11 1 726 1 755 0.0 773
Msa1418990 AT5G20710.1 48.686 723 355 10 14 726 12 728 0.0 684
Msa1418990 AT5G63800.1 48.980 735 329 15 5 726 1 702 0.0 666
Msa1418990 AT1G77410.1 48.061 722 329 15 14 726 8 692 0.0 653
Msa1418990 AT1G77410.3 47.730 727 329 16 14 726 8 697 0.0 648
Msa1418990 AT1G31740.1 45.753 730 332 13 13 726 1 682 0.0 634
Msa1418990 AT2G16730.1 45.087 692 347 9 31 716 44 708 0.0 617
Msa1418990 AT4G35010.1 44.075 692 354 10 31 716 41 705 0.0 596
Msa1418990 AT4G38590.1 44.078 667 337 11 61 719 1 639 0.0 560
Msa1418990 AT4G38590.2 41.313 731 372 14 12 719 7 703 0.0 553
Msa1418990 AT1G77410.2 46.777 605 276 15 131 726 19 586 2.12e-173 514
Msa1418990 AT1G77410.4 46.777 605 276 15 131 726 19 586 2.12e-173 514
Msa1418990 AT5G20710.2 43.371 528 284 9 209 726 1 523 2.33e-143 434
Msa1418990 AT2G04060.1 34.865 370 163 10 296 663 23 316 1.39e-50 184
Msa1418990 AT1G72990.3 36.061 330 174 9 41 341 18 339 1.21e-44 170
Msa1418990 AT1G72990.1 36.061 330 174 9 41 341 73 394 2.24e-44 170
Msa1418990 AT1G72990.4 36.061 330 174 9 41 341 73 394 2.24e-44 170
Msa1418990 AT1G72990.2 34.483 319 172 9 52 341 22 332 1.83e-38 152
Msa1418990 AT2G04062.1 39.888 178 86 2 25 202 1 157 2.04e-33 126

Find 220 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATATTAATTTGGTAATT+TGG 0.113818 tig0024656:+66533 None:intergenic
TCACAAGCATTGCCCGTTTA+AGG 0.134439 tig0024656:+72260 None:intergenic
TTATTCAAACCTATGTATTT+TGG 0.134516 tig0024656:-70318 Msa1418990:CDS
AAGAGAAACAAATTTATTTA+TGG 0.147269 tig0024656:+66293 None:intergenic
CCACAATTTGTCCTGCATTT+TGG 0.151033 tig0024656:+66789 None:intergenic
TTTGTTAATGGTCAACTTTC+AGG 0.158124 tig0024656:-67716 Msa1418990:intron
CCAATTCTCAGTCCACATTT+TGG 0.160554 tig0024656:+69104 None:intergenic
TTTACAAAGCCAAACTATTT+TGG 0.166100 tig0024656:-66381 Msa1418990:three_prime_UTR
AACATGACCTGCTGAATTTA+TGG 0.167665 tig0024656:+67748 None:intergenic
AACAGACAATGAGCCATTTA+AGG 0.176309 tig0024656:-69928 Msa1418990:intron
TTTACCTGAGACATAATTAT+TGG 0.179827 tig0024656:+69713 None:intergenic
ACTAATTTCATGCAGGTTAA+TGG 0.191236 tig0024656:-68097 Msa1418990:intron
AAATTTAAACCATATTAATT+TGG 0.205822 tig0024656:+66525 None:intergenic
CTTTCACTAAATGTTAATTT+AGG 0.219363 tig0024656:+67579 None:intergenic
TAAGAGTAGAAAGGTGAATA+AGG 0.219467 tig0024656:+72016 None:intergenic
CAAATTTATTTATGGCAAAA+TGG 0.222033 tig0024656:+66301 None:intergenic
TTTCATCATGTTCACAATTT+TGG 0.227558 tig0024656:+69766 None:intergenic
CTGGAAAGGCTTACACAAAA+TGG 0.230100 tig0024656:-69492 Msa1418990:CDS
GTTTGTGCTGAATGGAATTA+TGG 0.235478 tig0024656:-70090 Msa1418990:CDS
ATTGAAACTCCAACCTTAAA+TGG 0.236195 tig0024656:+69915 None:intergenic
ACCAAATTACCAAATTAATA+TGG 0.255729 tig0024656:-66534 Msa1418990:three_prime_UTR
TATCATGGAGGAACTAATTT+TGG 0.268539 tig0024656:-68733 Msa1418990:CDS
AATATCTTCGTTACATTTCC+AGG 0.270788 tig0024656:+70277 None:intergenic
CATTTCTGCATCCAATCTTT+TGG 0.273132 tig0024656:+66425 None:intergenic
TTGAGCCTTCATACCATAAC+TGG 0.288620 tig0024656:-67138 Msa1418990:CDS
TCTTGTTATTGCCGACCTTT+AGG 0.289024 tig0024656:+67550 None:intergenic
CAATATTCACCAAAATAGTT+TGG 0.300815 tig0024656:+66372 None:intergenic
TCTAGACCCTTCAATGTTAC+TGG 0.308225 tig0024656:+67327 None:intergenic
CATAGCTTGTGGCAATAAAA+AGG 0.308874 tig0024656:+68695 None:intergenic
TTCTATAGGTACACTGATTT+CGG 0.310712 tig0024656:-68979 Msa1418990:intron
CTCCTTTGTTAACTACTATA+TGG 0.312217 tig0024656:-68887 Msa1418990:intron
CACAAAATGGGCTGCTCAAA+TGG 0.319547 tig0024656:-69479 Msa1418990:CDS
ATGGACATAGCTTCCATAAA+AGG 0.323182 tig0024656:-68078 Msa1418990:CDS
AGAGCTAAAGTTTCCTTAAA+CGG 0.326478 tig0024656:-72273 Msa1418990:five_prime_UTR
TGTACCTCGGGTGTGCTTCT+TGG 0.329719 tig0024656:+71729 None:intergenic
GCATGGGAAAGGGTGAAATA+TGG 0.334337 tig0024656:-66902 Msa1418990:CDS
CTTTATGTTCACTTGCGTAT+TGG 0.343254 tig0024656:-70120 Msa1418990:CDS
TAGTGTTGCTGTGGGTCTTC+CGG 0.356885 tig0024656:-67517 Msa1418990:intron
GACTTCCAAATGAACCAAAA+TGG 0.361446 tig0024656:-68564 Msa1418990:CDS
TCAAGTTTACACCAAAAGAT+TGG 0.366104 tig0024656:-66436 Msa1418990:three_prime_UTR
GAGCTAAAGTTTCCTTAAAC+GGG 0.375718 tig0024656:-72272 Msa1418990:five_prime_UTR
CATCATAGCAAATGCACTTT+GGG 0.376087 tig0024656:-67981 Msa1418990:CDS
TGCATACCATATTCATCAAT+AGG 0.379546 tig0024656:+68661 None:intergenic
GTTTGGCTCAAGTATGTTCC+AGG 0.380815 tig0024656:-69963 Msa1418990:CDS
CACAAAGCCCTTGTGATTGA+TGG 0.381962 tig0024656:-71789 Msa1418990:CDS
CTGGAAGTTCCTCCATTGAT+TGG 0.382186 tig0024656:-67119 Msa1418990:CDS
GTTACAAGCTCTATAATTCA+TGG 0.383874 tig0024656:+66347 None:intergenic
TTCTTTACAAAACTTTCATT+AGG 0.386816 tig0024656:+67791 None:intergenic
TGATAGATCGAGAATGAGTA+TGG 0.388987 tig0024656:-69541 Msa1418990:intron
GGACCTGTGGAATGGGAAAT+TGG 0.390507 tig0024656:-69520 Msa1418990:CDS
GATGCTCCTATTGATGAATA+TGG 0.390606 tig0024656:-68667 Msa1418990:intron
CCAAAGTGCATTTGCTATGA+TGG 0.390990 tig0024656:+67982 None:intergenic
ACATGGAATGTTGGGGTGTT+AGG 0.391351 tig0024656:-67351 Msa1418990:CDS
TGTGCAGAGGATTTCCCGTT+TGG 0.394642 tig0024656:-69980 Msa1418990:intron
TCTGCGGCAACGGTTACATT+TGG 0.396362 tig0024656:-68285 Msa1418990:CDS
CCAAAATGTGGACTGAGAAT+TGG 0.399232 tig0024656:-69104 Msa1418990:CDS
TATATTTGATTGTAGTATCA+TGG 0.404132 tig0024656:-68748 Msa1418990:intron
AATGGACATGAGCCTTCTCC+TGG 0.408664 tig0024656:-70295 Msa1418990:CDS
CATGTAAAGTTGCTTGCAAA+TGG 0.412650 tig0024656:-66259 Msa1418990:three_prime_UTR
GAGACTTGTCTTGGCAGAAA+TGG 0.417613 tig0024656:-67293 Msa1418990:CDS
CCATCATAGCAAATGCACTT+TGG 0.421070 tig0024656:-67982 Msa1418990:CDS
GTCCCTACGTTTGTGCTGAA+TGG 0.427816 tig0024656:-70098 Msa1418990:CDS
TCTTTACTTAGTGTTGCTGT+GGG 0.428806 tig0024656:-67525 Msa1418990:CDS
GCAACGGTTACATTTGGAAA+TGG 0.429102 tig0024656:-68279 Msa1418990:CDS
ACCAAAGCATTGGTCGTCAT+TGG 0.431882 tig0024656:-66872 Msa1418990:CDS
GCCAATGACGACCAATGCTT+TGG 0.432093 tig0024656:+66871 None:intergenic
TTCTTTACTTAGTGTTGCTG+TGG 0.433115 tig0024656:-67526 Msa1418990:CDS
AACAAAAGACACACCATTGT+TGG 0.435048 tig0024656:-71961 Msa1418990:five_prime_UTR
AGAGAGTTTGTTTCAAACTC+AGG 0.436146 tig0024656:-69741 Msa1418990:CDS
TTATTGTCTTTGTGGGTTTG+TGG 0.439850 tig0024656:-71837 Msa1418990:CDS
ACAAAAGACACACCATTGTT+GGG 0.443066 tig0024656:-71960 Msa1418990:five_prime_UTR
TGTGAATGATTTAGAAGAGC+AGG 0.443201 tig0024656:-72230 Msa1418990:five_prime_UTR
TGACCCTACTGGAATTTCAT+TGG 0.446479 tig0024656:-66590 Msa1418990:CDS
CTTGGTTGTGCTTGAAGAAT+GGG 0.453865 tig0024656:-66617 Msa1418990:CDS
TTGGACACAAGGATCATCAT+TGG 0.454214 tig0024656:-67100 Msa1418990:CDS
AAGAGTAGAAAGGTGAATAA+GGG 0.454282 tig0024656:+72017 None:intergenic
TTCGTTACATTTCCAGGAGA+AGG 0.456508 tig0024656:+70283 None:intergenic
GTTGGATAGGTTGGACTAAA+GGG 0.457143 tig0024656:-67168 Msa1418990:intron
GGAACATACTTGAGCCAAAC+GGG 0.461421 tig0024656:+69966 None:intergenic
TGGAAAGGCTTACACAAAAT+GGG 0.465526 tig0024656:-69491 Msa1418990:CDS
GTGGAGAACCAACACAGAAA+TGG 0.465677 tig0024656:-66770 Msa1418990:intron
TAGTGAAAGTGTTAACCTAA+AGG 0.466295 tig0024656:-67565 Msa1418990:CDS
GGTAAACTTACAACGGGATC+AGG 0.468492 tig0024656:+69403 None:intergenic
AAATCTTACCATTTCTGTGT+TGG 0.468836 tig0024656:+66762 None:intergenic
TCAAATTAATACCAGAATGT+TGG 0.472200 tig0024656:-67387 Msa1418990:intron
GAAAACGATGGGAAGAGAAG+GGG 0.474585 tig0024656:+72187 None:intergenic
TGGTCCAATAATTATGTCTC+AGG 0.477103 tig0024656:-69717 Msa1418990:intron
TTGGGTTTAAAGTTCTCGTT+GGG 0.479071 tig0024656:+69123 None:intergenic
ACTTTGAAACATGGAATGTT+GGG 0.479098 tig0024656:-67359 Msa1418990:CDS
TTATTTCAAAAGGCTAAAGA+TGG 0.480940 tig0024656:-70352 Msa1418990:CDS
GTGGCCAGACTTATTTCAAA+AGG 0.481426 tig0024656:-70362 Msa1418990:CDS
AAATTTGTTTCTCTTTACAT+TGG 0.482332 tig0024656:-66285 Msa1418990:three_prime_UTR
CGGGTGTGCTTCTTGGATAG+TGG 0.483949 tig0024656:+71736 None:intergenic
TTTGTGCTGAATGGAATTAT+GGG 0.485197 tig0024656:-70089 Msa1418990:intron
AATGGAGGAACTTCCAGTTA+TGG 0.487302 tig0024656:+67125 None:intergenic
CACTTTGAAACATGGAATGT+TGG 0.488183 tig0024656:-67360 Msa1418990:CDS
TCTTGGTTGTGCTTGAAGAA+TGG 0.488347 tig0024656:-66618 Msa1418990:CDS
TCTGTTCTGAAAGCCATCCC+TGG 0.489582 tig0024656:+69945 None:intergenic
GTCTAGATACTGGTGTACCT+TGG 0.490231 tig0024656:-69450 Msa1418990:CDS
TCTAGATACTGGTGTACCTT+GGG 0.490711 tig0024656:-69449 Msa1418990:CDS
GGAAAACGATGGGAAGAGAA+GGG 0.498567 tig0024656:+72186 None:intergenic
TGATATTTATAAGAGTAGAA+AGG 0.499445 tig0024656:+72007 None:intergenic
CGACACAAAATCTGCGGCAA+CGG 0.500314 tig0024656:-68295 Msa1418990:CDS
CCGTGGATACTACATTTGAT+TGG 0.501200 tig0024656:-68048 Msa1418990:CDS
TGGAAAACGATGGGAAGAGA+AGG 0.501436 tig0024656:+72185 None:intergenic
GAATGGGGAGGTGACCCTAC+TGG 0.503961 tig0024656:-66601 Msa1418990:CDS
GATCCTACAGTCACATGGCT+TGG 0.504519 tig0024656:-68481 Msa1418990:CDS
GGTGAGGTGTGTGCTTCTGA+TGG 0.505902 tig0024656:+72115 None:intergenic
CCAAAATGCAGGACAAATTG+TGG 0.507299 tig0024656:-66789 Msa1418990:CDS
ATGGCTGTAGGTCTAGATAC+TGG 0.511595 tig0024656:-69460 Msa1418990:CDS
GCTGCCACTCGGCGCGTCAA+AGG 0.512668 tig0024656:+66950 None:intergenic
GAATGGGAAATTGGTGCTCC+TGG 0.513051 tig0024656:-69511 Msa1418990:CDS
TGTTGGATAGGTTGGACTAA+AGG 0.513449 tig0024656:-67169 Msa1418990:intron
ATGTGGACTGAGAATTGGTC+TGG 0.514008 tig0024656:-69099 Msa1418990:CDS
GCTCAAGTATGTTCCAGGGA+TGG 0.514701 tig0024656:-69958 Msa1418990:CDS
AATAAGGGACTTAGAGAAAA+CGG 0.514949 tig0024656:+72032 None:intergenic
AAAACGATGGGAAGAGAAGG+GGG 0.516601 tig0024656:+72188 None:intergenic
GAGAGTTTGTTTCAAACTCA+GGG 0.516652 tig0024656:-69740 Msa1418990:CDS
CTAGACCCTTCAATGTTACT+GGG 0.516715 tig0024656:+67328 None:intergenic
CTTACCTTGTACCATGTCAA+AGG 0.519467 tig0024656:+67066 None:intergenic
TTCTTTGTCCATCAATCACA+AGG 0.521053 tig0024656:+71781 None:intergenic
ATGTCCATTCCAAAATACAT+AGG 0.521663 tig0024656:+70309 None:intergenic
CTACTCATATCTAGTGCCAC+TGG 0.522187 tig0024656:+66924 None:intergenic
TGGATAGGTATCATATTCCT+CGG 0.523367 tig0024656:-66666 Msa1418990:intron
AACTTCCAGTTATGGTATGA+AGG 0.525743 tig0024656:+67133 None:intergenic
ATGAATGTAGGAACTGTGTA+TGG 0.525837 tig0024656:-67615 Msa1418990:intron
TTTATAGATTTGGAAAACGA+TGG 0.528614 tig0024656:+72175 None:intergenic
TTACCATGTGCTATATATGC+AGG 0.531919 tig0024656:+66849 None:intergenic
TCTTGCTTGCACATGTCCCA+AGG 0.532274 tig0024656:+69433 None:intergenic
AGATATGAGTAGCATGGGAA+AGG 0.533528 tig0024656:-66913 Msa1418990:CDS
TTGGCAGAAATGGTCTTACA+AGG 0.535055 tig0024656:-67283 Msa1418990:intron
TTTGGGTTTAAAGTTCTCGT+TGG 0.535843 tig0024656:+69122 None:intergenic
GTTAGGCCCAGTAACATTGA+AGG 0.535870 tig0024656:-67334 Msa1418990:CDS
GCCACTGGATCGCTGCCACT+CGG 0.538573 tig0024656:+66939 None:intergenic
ACTTTAGCTCTTTAGCATTG+TGG 0.539845 tig0024656:+72285 None:intergenic
AGGAACTGTGTATGGAGGAT+TGG 0.540099 tig0024656:-67607 Msa1418990:CDS
TGGAACATACTTGAGCCAAA+CGG 0.541950 tig0024656:+69965 None:intergenic
TATGATGGAATCGTCGTCAC+TGG 0.542393 tig0024656:+67997 None:intergenic
GTGAATGATTTAGAAGAGCA+GGG 0.543186 tig0024656:-72229 Msa1418990:five_prime_UTR
TGGATAAACGACCAAAGCAT+TGG 0.545055 tig0024656:-66882 Msa1418990:CDS
TCGTCGTCACTGGAGTAGGC+AGG 0.545444 tig0024656:+68007 None:intergenic
AGGGGACAAGAGACTTGTCT+TGG 0.546148 tig0024656:-67302 Msa1418990:CDS
ACTCTTACCATAAATTCAGC+AGG 0.547224 tig0024656:-67755 Msa1418990:CDS
TCATAGACCAACTGAAGACT+TGG 0.549584 tig0024656:-68944 Msa1418990:CDS
ACATTGAAGGGTCTAGATGA+GGG 0.549862 tig0024656:-67321 Msa1418990:CDS
TGAGTATGGACCTGTGGAAT+GGG 0.552441 tig0024656:-69527 Msa1418990:CDS
GAGTCCAAGTGGGAACGTCT+TGG 0.553534 tig0024656:-66635 Msa1418990:CDS
GGTATCATATTCCTCGGTCA+TGG 0.554459 tig0024656:-66660 Msa1418990:CDS
GGAATCGTCGTCACTGGAGT+AGG 0.554946 tig0024656:+68003 None:intergenic
TGATCCTTGTGTCCAATCAA+TGG 0.555014 tig0024656:+67107 None:intergenic
GATATGAGTAGCATGGGAAA+GGG 0.555262 tig0024656:-66912 Msa1418990:CDS
GCACCAATTTCCCATTCCAC+AGG 0.555297 tig0024656:+69517 None:intergenic
TTTCCAAGCCATGTGACTGT+AGG 0.556295 tig0024656:+68478 None:intergenic
ACAACCTTTGACATGGTACA+AGG 0.556753 tig0024656:-67070 Msa1418990:intron
TGATGGGTGAGCTGAGGTGA+AGG 0.560347 tig0024656:+72132 None:intergenic
GGACTGAGAATTGGTCTGGC+TGG 0.561829 tig0024656:-69095 Msa1418990:intron
TTATAGATTTGGAAAACGAT+GGG 0.562301 tig0024656:+72176 None:intergenic
CCAATCAAATGTAGTATCCA+CGG 0.564185 tig0024656:+68048 None:intergenic
GCACTAGATATGAGTAGCAT+GGG 0.566286 tig0024656:-66918 Msa1418990:CDS
GGCACTAGATATGAGTAGCA+TGG 0.566466 tig0024656:-66919 Msa1418990:CDS
GGAAATTGGTGCTCCTGGAA+AGG 0.566691 tig0024656:-69506 Msa1418990:CDS
TGGGCTGCTCAAATGGCTGT+AGG 0.566955 tig0024656:-69472 Msa1418990:CDS
TGCTTCTGATGGGTGAGCTG+AGG 0.568568 tig0024656:+72126 None:intergenic
CATAGGTTTGAATAACATCA+AGG 0.569765 tig0024656:+70326 None:intergenic
ATGAGTATGGACCTGTGGAA+TGG 0.571228 tig0024656:-69528 Msa1418990:CDS
TCCTCCATTGATTGGACACA+AGG 0.572202 tig0024656:-67111 Msa1418990:CDS
GTGAGGTGTGTGCTTCTGAT+GGG 0.573366 tig0024656:+72116 None:intergenic
TTTCAAAAGGCTAAAGATGG+AGG 0.574864 tig0024656:-70349 Msa1418990:CDS
TTCCATTCAGCACAAACGTA+GGG 0.575351 tig0024656:+70096 None:intergenic
GTCAAGCTAGCACAACAAGC+TGG 0.575439 tig0024656:-70144 Msa1418990:CDS
CTGTGGATCCTACAGTCACA+TGG 0.578432 tig0024656:-68486 Msa1418990:CDS
GGATCCACAGAAATCAAAGC+TGG 0.580873 tig0024656:+68499 None:intergenic
GCCGAGTGGCAGCGATCCAG+TGG 0.582197 tig0024656:-66940 Msa1418990:CDS
GCTGAATTTATGGTAAGAGT+AGG 0.582723 tig0024656:+67758 None:intergenic
TGAGCCAGCTTTGATTTCTG+TGG 0.583476 tig0024656:-68503 Msa1418990:CDS
TCACCAATGAAATTCCAGTA+GGG 0.584721 tig0024656:+66587 None:intergenic
AACATTGAAGGGTCTAGATG+AGG 0.588983 tig0024656:-67322 Msa1418990:CDS
TTCACCAATGAAATTCCAGT+AGG 0.593759 tig0024656:+66586 None:intergenic
AAACGATGGGAAGAGAAGGG+GGG 0.595907 tig0024656:+72189 None:intergenic
CAATCAAATGTAGTATCCAC+GGG 0.596448 tig0024656:+68049 None:intergenic
TTGTAGATTGACACTTGCAA+TGG 0.599307 tig0024656:-69168 Msa1418990:intron
GCAAATATGATCTACCACCT+TGG 0.599730 tig0024656:-68257 Msa1418990:CDS
ACAACCAAGACGTTCCCACT+TGG 0.601417 tig0024656:+66631 None:intergenic
GAAAGTGTTAACCTAAAGGT+CGG 0.607496 tig0024656:-67561 Msa1418990:CDS
AAGGAATGCAGCACAGACAC+TGG 0.612057 tig0024656:+68326 None:intergenic
AGAACTTTAAACCCAAAATG+TGG 0.614315 tig0024656:-69116 Msa1418990:CDS
TGTGCTTCTTGGATAGTGGA+TGG 0.615066 tig0024656:+71740 None:intergenic
TTGGTCTGCACTTTGAAACA+TGG 0.615627 tig0024656:-67368 Msa1418990:CDS
GGAAGAATGCTGACAGACCA+AGG 0.618216 tig0024656:+68240 None:intergenic
TTAGCTCTTTAGCATTGTGG+AGG 0.618325 tig0024656:+72288 None:intergenic
CGGTCATGGTTGAGTCCAAG+TGG 0.619900 tig0024656:-66646 Msa1418990:CDS
GCGATTCTTCAGATTATCTG+TGG 0.622203 tig0024656:-67940 Msa1418990:CDS
TTTGGCTCAAGTATGTTCCA+GGG 0.624074 tig0024656:-69962 Msa1418990:CDS
GAGTATGCCAAGTCTTCAGT+TGG 0.624897 tig0024656:+68937 None:intergenic
TATAGGTACACTGATTTCGG+TGG 0.628326 tig0024656:-68976 Msa1418990:intron
CGAGAATGAGTATGGACCTG+TGG 0.628829 tig0024656:-69533 Msa1418990:CDS
TTAGGCCCAGTAACATTGAA+GGG 0.630859 tig0024656:-67333 Msa1418990:CDS
AGCATCATAATCATAGCTTG+TGG 0.636529 tig0024656:+68684 None:intergenic
TGTGATGAATGTAATTACGC+TGG 0.639969 tig0024656:-66825 Msa1418990:CDS
TTGGTTGTGCTTGAAGAATG+GGG 0.644178 tig0024656:-66616 Msa1418990:CDS
TACCATATAGTAGTTAACAA+AGG 0.653367 tig0024656:+68885 None:intergenic
TCTTTGTCCATCAATCACAA+GGG 0.658868 tig0024656:+71782 None:intergenic
GCTAGATTCATACAAAATCG+TGG 0.659974 tig0024656:-68910 Msa1418990:CDS
CCATAAAAGGATGACTCCCG+TGG 0.660532 tig0024656:-68065 Msa1418990:CDS
TGGCCTGCATATATAGCACA+TGG 0.662930 tig0024656:-66852 Msa1418990:CDS
CATTGAAGGGTCTAGATGAG+GGG 0.664668 tig0024656:-67320 Msa1418990:CDS
ACAACCTTTGACGCGCCGAG+TGG 0.672410 tig0024656:-66954 Msa1418990:CDS
AATGTAGGAACTGTGTATGG+AGG 0.675173 tig0024656:-67612 Msa1418990:intron
ATTCCATTCAGCACAAACGT+AGG 0.678066 tig0024656:+70095 None:intergenic
CTTTGAAACATGGAATGTTG+GGG 0.679854 tig0024656:-67358 Msa1418990:CDS
TCCTTGTGTCCAATCAATGG+AGG 0.680608 tig0024656:+67110 None:intergenic
ATTTGATTGTAGTATCATGG+AGG 0.681855 tig0024656:-68745 Msa1418990:intron
CTTGGACTCAACCATGACCG+AGG 0.682721 tig0024656:+66649 None:intergenic
GGTCATGGTTGAGTCCAAGT+GGG 0.689731 tig0024656:-66645 Msa1418990:CDS
AAACTACGACACAAAATCTG+CGG 0.691374 tig0024656:-68301 Msa1418990:CDS
GATGGGTGAGCTGAGGTGAA+GGG 0.692567 tig0024656:+72133 None:intergenic
AGTTTGTTTCAAACTCAGGG+TGG 0.697300 tig0024656:-69737 Msa1418990:CDS
CTATCCAAGAAGCACACCCG+AGG 0.711494 tig0024656:-71733 Msa1418990:intron
GTTGTGCTTGAAGAATGGGG+AGG 0.774502 tig0024656:-66613 Msa1418990:CDS
AGAATGCTGACAGACCAAGG+TGG 0.820211 tig0024656:+68243 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTTTTTTTTTTTA+GGG + tig0024656:68916-68935 None:intergenic 0.0%
!!! TTATTATTTTTTTTTTTTTT+AGG + tig0024656:68917-68936 None:intergenic 0.0%
!!! TAATTTAAATGAACTTTTTA+AGG + tig0024656:67161-67180 None:intergenic 10.0%
!! ATATAATAGAAAATAAAGAA+AGG + tig0024656:67319-67338 None:intergenic 10.0%
!!! AACTTAACATTTTAAATAAT+TGG + tig0024656:67706-67725 None:intergenic 10.0%
!!! TTTTTTTCTCAAAAAAATTA+AGG + tig0024656:68023-68042 None:intergenic 10.0%
!!! TTTTATTATAAAGTTTTTGT+TGG - tig0024656:68862-68881 Msa1418990:intron 10.0%
!!! TATTTATAGCTTTAAATTAA+TGG + tig0024656:69483-69502 None:intergenic 10.0%
!! AAATTTAAACCATATTAATT+TGG + tig0024656:72006-72025 None:intergenic 10.0%
!! AATGAATAAATAAAAGAGAA+AGG + tig0024656:66901-66920 None:intergenic 15.0%
!!! AACAAACATATACATAATTT+TGG + tig0024656:66947-66966 None:intergenic 15.0%
!! TAATTCAAAAATATTATGGA+GGG + tig0024656:67046-67065 None:intergenic 15.0%
!! TTAATTCAAAAATATTATGG+AGG + tig0024656:67047-67066 None:intergenic 15.0%
!!! AACAGTCAAATTTTAAAATA+AGG - tig0024656:67227-67246 Msa1418990:intron 15.0%
!! AATATATAACAAAAATACAC+TGG + tig0024656:67438-67457 None:intergenic 15.0%
!!! TTTTTACTTATATTAGTAAC+CGG + tig0024656:67468-67487 None:intergenic 15.0%
!! AAAATGTTAAGTTATTTGAT+TGG - tig0024656:67713-67732 Msa1418990:intron 15.0%
!!! TATAAAAAGATATTGACTTT+TGG + tig0024656:67806-67825 None:intergenic 15.0%
!!! TTTTAATTAATCCAAACTTT+TGG - tig0024656:68698-68717 Msa1418990:CDS 15.0%
!! ATTTAATCTAATACTGAAAT+TGG - tig0024656:68950-68969 Msa1418990:CDS 15.0%
!! AAAGCTATAAATATTTCATT+TGG - tig0024656:69490-69509 Msa1418990:CDS 15.0%
!! AAGCTATAAATATTTCATTT+GGG - tig0024656:69491-69510 Msa1418990:CDS 15.0%
!! TTAACAAAAAAAATCAAACT+AGG + tig0024656:70149-70168 None:intergenic 15.0%
!!! TTTTTTGTTAATGTAATCTT+AGG - tig0024656:70158-70177 Msa1418990:CDS 15.0%
!! CTTAAAACACATTAAAAATT+TGG - tig0024656:70650-70669 Msa1418990:intron 15.0%
!! ATTAAGTTATATATGAATGT+AGG - tig0024656:70901-70920 Msa1418990:intron 15.0%
!!! TTTTTTTTAATCTTTTGGAT+AGG - tig0024656:71847-71866 Msa1418990:CDS 15.0%
!! AAGAGAAACAAATTTATTTA+TGG + tig0024656:72238-72257 None:intergenic 15.0%
!! TGATATTTATAAGAGTAGAA+AGG + tig0024656:66524-66543 None:intergenic 20.0%
!!! TGATTTTATTATTGTCTTTG+TGG - tig0024656:66683-66702 Msa1418990:intron 20.0%
!!! GATTTTATTATTGTCTTTGT+GGG - tig0024656:66684-66703 Msa1418990:intron 20.0%
!! CATTTAATAATTGATGTATG+TGG + tig0024656:67542-67561 None:intergenic 20.0%
!!! TAAGCAAAAATTTGTTCTTA+AGG + tig0024656:67567-67586 None:intergenic 20.0%
!! AAAATAAAAAATGTGCATGT+TGG + tig0024656:67625-67644 None:intergenic 20.0%
!! AAGATAAAACTAAAAGCAAA+AGG - tig0024656:67873-67892 Msa1418990:intron 20.0%
!!! TTATTCAAACCTATGTATTT+TGG - tig0024656:68210-68229 Msa1418990:CDS 20.0%
!! AAATAATTATTTATGTGCAG+AGG - tig0024656:68535-68554 Msa1418990:CDS 20.0%
!! TAAATATTTCATTTGGGAAT+TGG - tig0024656:69497-69516 Msa1418990:CDS 20.0%
!! AAATATTTCATTTGGGAATT+GGG - tig0024656:69498-69517 Msa1418990:CDS 20.0%
!!! TTTTATGTTACCTATTCTAT+AGG - tig0024656:69535-69554 Msa1418990:CDS 20.0%
!! TATATGGTATATGAATATGA+TGG - tig0024656:69657-69676 Msa1418990:intron 20.0%
!! TATATTTGATTGTAGTATCA+TGG - tig0024656:69780-69799 Msa1418990:CDS 20.0%
!! ATAAGGTTTAAATTGTTTCA+TGG - tig0024656:69890-69909 Msa1418990:intron 20.0%
!!! CTTTATGTAAATTTTTCAGA+TGG + tig0024656:69992-70011 None:intergenic 20.0%
!!! CTTCAATAAAGTAACAATTT+TGG + tig0024656:70126-70145 None:intergenic 20.0%
!!! AAATTTTACTAATTTCATGC+AGG - tig0024656:70424-70443 Msa1418990:intron 20.0%
!!! TTAATGTGTTTTAAGAAGTT+AGG + tig0024656:70645-70664 None:intergenic 20.0%
!! TTCTTTACAAAACTTTCATT+AGG + tig0024656:70740-70759 None:intergenic 20.0%
!!! AATGAAAGTTTTGTAAAGAA+TGG - tig0024656:70740-70759 Msa1418990:intron 20.0%
!! TAAATTGGAATTTATCATGA+AGG + tig0024656:70865-70884 None:intergenic 20.0%
!! CTTTCACTAAATGTTAATTT+AGG + tig0024656:70952-70971 None:intergenic 20.0%
!! ACCAAATTACCAAATTAATA+TGG - tig0024656:71994-72013 Msa1418990:five_prime_UTR 20.0%
!!! ACCATATTAATTTGGTAATT+TGG + tig0024656:71998-72017 None:intergenic 20.0%
!! CAAATTTATTTATGGCAAAA+TGG + tig0024656:72230-72249 None:intergenic 20.0%
!!! AAATTTGTTTCTCTTTACAT+TGG - tig0024656:72243-72262 Msa1418990:five_prime_UTR 20.0%
! TTATAGATTTGGAAAACGAT+GGG + tig0024656:66355-66374 None:intergenic 25.0%
! TTTATAGATTTGGAAAACGA+TGG + tig0024656:66356-66375 None:intergenic 25.0%
!!! GAAAGTGCTTTTTATAGATT+TGG + tig0024656:66366-66385 None:intergenic 25.0%
!!! AGATAGAATGTTTTGTTACA+AGG + tig0024656:66437-66456 None:intergenic 25.0%
!!! CAAAGAAGAATTTTGATATC+TGG - tig0024656:66763-66782 Msa1418990:intron 25.0%
! TTCATTGCATAATATATGCA+GGG + tig0024656:67294-67313 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - tig0024656:67503-67522 Msa1418990:intron 25.0%
! TTGCTTATATTAATGATCAG+AGG - tig0024656:67580-67599 Msa1418990:CDS 25.0%
! TGCTTATATTAATGATCAGA+GGG - tig0024656:67581-67600 Msa1418990:CDS 25.0%
! GTTAAGTTATTTGATTGGTA+AGG - tig0024656:67718-67737 Msa1418990:CDS 25.0%
! GTTTAAACCATTCGTAAAAT+TGG - tig0024656:67764-67783 Msa1418990:CDS 25.0%
! GTAGTATAGATACTTATTTG+TGG - tig0024656:67927-67946 Msa1418990:intron 25.0%
! AATCTATGTTGTATAGATAC+AGG + tig0024656:68061-68080 None:intergenic 25.0%
!! ATTTTTCTTATGCAATGTCT+TGG - tig0024656:68078-68097 Msa1418990:CDS 25.0%
! TTATTTCAAAAGGCTAAAGA+TGG - tig0024656:68176-68195 Msa1418990:intron 25.0%
!! TTTCATCATGTTCACAATTT+TGG + tig0024656:68765-68784 None:intergenic 25.0%
! TTTACCTGAGACATAATTAT+TGG + tig0024656:68818-68837 None:intergenic 25.0%
! TACCATATAGTAGTTAACAA+AGG + tig0024656:69646-69665 None:intergenic 25.0%
! TTAACGCCTTTCAAAATATT+AGG - tig0024656:69942-69961 Msa1418990:CDS 25.0%
! ACTTCAAAAAACTTCTAACA+TGG + tig0024656:70391-70410 None:intergenic 25.0%
! ACTAATGTTTACACTGAAAA+TGG + tig0024656:70717-70736 None:intergenic 25.0%
!!! GTTCTACATGTTTTTGTTAA+TGG - tig0024656:70800-70819 Msa1418990:intron 25.0%
!! AAGGAATTTCTAAGAAGAAA+AGG + tig0024656:70846-70865 None:intergenic 25.0%
! TCAAATTAATACCAGAATGT+TGG - tig0024656:71141-71160 Msa1418990:intron 25.0%
!! TGAGACAAATTTTATGTTGT+TGG - tig0024656:71342-71361 Msa1418990:intron 25.0%
!! CAAATTTTATGTTGTTGGAT+AGG - tig0024656:71347-71366 Msa1418990:intron 25.0%
! TTAAAAAACAACCTTTGACA+TGG - tig0024656:71451-71470 Msa1418990:intron 25.0%
! AGATTTATTGAAAATGCAGA+TGG + tig0024656:71534-71553 None:intergenic 25.0%
!! TTTACAAAGCCAAACTATTT+TGG - tig0024656:72147-72166 Msa1418990:five_prime_UTR 25.0%
! CAATATTCACCAAAATAGTT+TGG + tig0024656:72159-72178 None:intergenic 25.0%
AGAGCTAAAGTTTCCTTAAA+CGG - tig0024656:66255-66274 Msa1418990:three_prime_UTR 30.0%
AATAAGGGACTTAGAGAAAA+CGG + tig0024656:66499-66518 None:intergenic 30.0%
AAGAGTAGAAAGGTGAATAA+GGG + tig0024656:66514-66533 None:intergenic 30.0%
TAAGAGTAGAAAGGTGAATA+AGG + tig0024656:66515-66534 None:intergenic 30.0%
! TATTTTTCTCAACCCAACAA+TGG + tig0024656:66583-66602 None:intergenic 30.0%
!! CTATTCAAGAGTTTTGATGA+TGG - tig0024656:66621-66640 Msa1418990:CDS 30.0%
AACTAATGTTGTACACATGT+TGG + tig0024656:66847-66866 None:intergenic 30.0%
GAGAAAGGAAAGCAATAATT+TGG + tig0024656:66886-66905 None:intergenic 30.0%
!!! ACATAATTTTGGTTCATGCA+TGG + tig0024656:66936-66955 None:intergenic 30.0%
!! TGTTTGTTGTTACTTAATCG+TGG - tig0024656:66959-66978 Msa1418990:intron 30.0%
TCATTGCATAATATATGCAG+GGG + tig0024656:67293-67312 None:intergenic 30.0%
GTTCATTGCATAATATATGC+AGG + tig0024656:67295-67314 None:intergenic 30.0%
AAGTTGGAATGTAGTAAACT+AGG - tig0024656:67402-67421 Msa1418990:intron 30.0%
TTGTTATATATTACACCCTC+CGG - tig0024656:67446-67465 Msa1418990:intron 30.0%
TACTTATATTAGTAACCGGA+GGG + tig0024656:67464-67483 None:intergenic 30.0%
TTACTTATATTAGTAACCGG+AGG + tig0024656:67465-67484 None:intergenic 30.0%
AGTTATTTGATTGGTAAGGA+AGG - tig0024656:67722-67741 Msa1418990:CDS 30.0%
ATTGGTAAGGAAGGATAATA+TGG - tig0024656:67731-67750 Msa1418990:CDS 30.0%
AAACCATTCGTAAAATTGGA+AGG - tig0024656:67768-67787 Msa1418990:CDS 30.0%
! TTTCCTTCCAATTTTACGAA+TGG + tig0024656:67774-67793 None:intergenic 30.0%
TGTTGTATAGATACAGGTAT+GGG + tig0024656:68055-68074 None:intergenic 30.0%
ATGTTGTATAGATACAGGTA+TGG + tig0024656:68056-68075 None:intergenic 30.0%
! CTTGTGTACATAAGTTTTCT+CGG - tig0024656:68109-68128 Msa1418990:intron 30.0%
TATGTTTCTTAATGCAGATG+TGG - tig0024656:68147-68166 Msa1418990:intron 30.0%
!!! TTAGCCTTTTGAAATAAGTC+TGG + tig0024656:68173-68192 None:intergenic 30.0%
CATAGGTTTGAATAACATCA+AGG + tig0024656:68205-68224 None:intergenic 30.0%
!! CAAACCTATGTATTTTGGAA+TGG - tig0024656:68215-68234 Msa1418990:CDS 30.0%
ATGTCCATTCCAAAATACAT+AGG + tig0024656:68222-68241 None:intergenic 30.0%
AATATCTTCGTTACATTTCC+AGG + tig0024656:68254-68273 None:intergenic 30.0%
TTTGTGCTGAATGGAATTAT+GGG - tig0024656:68439-68458 Msa1418990:intron 30.0%
ATTGAAACTCCAACCTTAAA+TGG + tig0024656:68616-68635 None:intergenic 30.0%
TATACATCATGCCAAAAGTT+TGG + tig0024656:68712-68731 None:intergenic 30.0%
TGGCATGATGTATATATGTT+AGG - tig0024656:68718-68737 Msa1418990:CDS 30.0%
GGTACAAATTTGAAGGATAA+AGG - tig0024656:69268-69287 Msa1418990:intron 30.0%
TGTCAATCTACAACATAGTT+CGG + tig0024656:69353-69372 None:intergenic 30.0%
AGAACTTTAAACCCAAAATG+TGG - tig0024656:69412-69431 Msa1418990:intron 30.0%
AATCAGTGTACCTATAGAAT+AGG + tig0024656:69548-69567 None:intergenic 30.0%
!! TTCTATAGGTACACTGATTT+CGG - tig0024656:69549-69568 Msa1418990:intron 30.0%
CTCCTTTGTTAACTACTATA+TGG - tig0024656:69641-69660 Msa1418990:intron 30.0%
ATTTGATTGTAGTATCATGG+AGG - tig0024656:69783-69802 Msa1418990:CDS 30.0%
! TATCATGGAGGAACTAATTT+TGG - tig0024656:69795-69814 Msa1418990:intron 30.0%
TGCATACCATATTCATCAAT+AGG + tig0024656:69870-69889 None:intergenic 30.0%
GATGAATATGGTATGCAATA+AGG - tig0024656:69873-69892 Msa1418990:intron 30.0%
!! GGAAGTCCTAATATTTTGAA+AGG + tig0024656:69951-69970 None:intergenic 30.0%
CTCAGTTCATGATAAGATTA+TGG - tig0024656:70099-70118 Msa1418990:CDS 30.0%
! AAAACTACAGTTTTGCAATC+AGG + tig0024656:70312-70331 None:intergenic 30.0%
! CAAAACTGTAGTTTTCAACA+CGG - tig0024656:70317-70336 Msa1418990:CDS 30.0%
ACTAATTTCATGCAGGTTAA+TGG - tig0024656:70431-70450 Msa1418990:intron 30.0%
TTTGTTAATGGTCAACTTTC+AGG - tig0024656:70812-70831 Msa1418990:intron 30.0%
!! TAGTGAAAGTGTTAACCTAA+AGG - tig0024656:70963-70982 Msa1418990:intron 30.0%
TCGAACAAGATAATACTAAC+CGG + tig0024656:71033-71052 None:intergenic 30.0%
!! ACTTTGAAACATGGAATGTT+GGG - tig0024656:71169-71188 Msa1418990:intron 30.0%
! TTTTATGTTGTTGGATAGGT+TGG - tig0024656:71351-71370 Msa1418990:intron 30.0%
! CTTTTACTAATCCAAAATGC+AGG - tig0024656:71728-71747 Msa1418990:intron 30.0%
AAATCTTACCATTTCTGTGT+TGG + tig0024656:71769-71788 None:intergenic 30.0%
TGGTAAGATTTCATATAACG+AGG - tig0024656:71778-71797 Msa1418990:CDS 30.0%
TCAAGTTTACACCAAAAGAT+TGG - tig0024656:72092-72111 Msa1418990:five_prime_UTR 30.0%
GTTACAAGCTCTATAATTCA+TGG + tig0024656:72184-72203 None:intergenic 30.0%
!! ACTTTAGCTCTTTAGCATTG+TGG + tig0024656:66246-66265 None:intergenic 35.0%
GAGCTAAAGTTTCCTTAAAC+GGG - tig0024656:66256-66275 Msa1418990:three_prime_UTR 35.0%
TGTGAATGATTTAGAAGAGC+AGG - tig0024656:66298-66317 Msa1418990:three_prime_UTR 35.0%
GTGAATGATTTAGAAGAGCA+GGG - tig0024656:66299-66318 Msa1418990:three_prime_UTR 35.0%
!! GAATGTTTTGTTACAAGGTG+AGG + tig0024656:66432-66451 None:intergenic 35.0%
AACAAAAGACACACCATTGT+TGG - tig0024656:66567-66586 Msa1418990:exon 35.0%
ACAAAAGACACACCATTGTT+GGG - tig0024656:66568-66587 Msa1418990:exon 35.0%
CAAAAAGAGTTTCACATGCT+GGG - tig0024656:66658-66677 Msa1418990:CDS 35.0%
AAAAAGAGTTTCACATGCTG+GGG - tig0024656:66659-66678 Msa1418990:CDS 35.0%
TTATTGTCTTTGTGGGTTTG+TGG - tig0024656:66691-66710 Msa1418990:intron 35.0%
TCTTTGTCCATCAATCACAA+GGG + tig0024656:66749-66768 None:intergenic 35.0%
TTCTTTGTCCATCAATCACA+AGG + tig0024656:66750-66769 None:intergenic 35.0%
AATGTTGTACACATGTTGGA+TGG + tig0024656:66843-66862 None:intergenic 35.0%
CCACAAAATGGTGAAAAAAG+GGG + tig0024656:66986-67005 None:intergenic 35.0%
CCCACAAAATGGTGAAAAAA+GGG + tig0024656:66987-67006 None:intergenic 35.0%
!!! CCCTTTTTTCACCATTTTGT+GGG - tig0024656:66984-67003 Msa1418990:intron 35.0%
ACCCACAAAATGGTGAAAAA+AGG + tig0024656:66988-67007 None:intergenic 35.0%
! TTTTCACCATTTTGTGGGTT+TGG - tig0024656:66989-67008 Msa1418990:intron 35.0%
! TACTGACTAAATGAGATGTC+TGG - tig0024656:67254-67273 Msa1418990:intron 35.0%
ACTGACTAAATGAGATGTCT+GGG - tig0024656:67255-67274 Msa1418990:intron 35.0%
TTTCAAAAGGCTAAAGATGG+AGG - tig0024656:68179-68198 Msa1418990:intron 35.0%
CTTTATGTTCACTTGCGTAT+TGG - tig0024656:68408-68427 Msa1418990:intron 35.0%
GTTTGTGCTGAATGGAATTA+TGG - tig0024656:68438-68457 Msa1418990:intron 35.0%
AACAGACAATGAGCCATTTA+AGG - tig0024656:68600-68619 Msa1418990:intron 35.0%
! AGAGAGTTTGTTTCAAACTC+AGG - tig0024656:68787-68806 Msa1418990:intron 35.0%
! GAGAGTTTGTTTCAAACTCA+GGG - tig0024656:68788-68807 Msa1418990:intron 35.0%
TGGTCCAATAATTATGTCTC+AGG - tig0024656:68811-68830 Msa1418990:intron 35.0%
GCAACGCTTCTTATTGTAAT+TGG + tig0024656:68890-68909 None:intergenic 35.0%
TGATAGATCGAGAATGAGTA+TGG - tig0024656:68987-69006 Msa1418990:intron 35.0%
TGGAAAGGCTTACACAAAAT+GGG - tig0024656:69037-69056 Msa1418990:intron 35.0%
TGCTAAGGTAAACTTACAAC+GGG + tig0024656:69134-69153 None:intergenic 35.0%
CTGCTAAGGTAAACTTACAA+CGG + tig0024656:69135-69154 None:intergenic 35.0%
TGTGTTTAGTGTTAGAGAAG+AGG - tig0024656:69247-69266 Msa1418990:intron 35.0%
! GAGAAGAGGTACAAATTTGA+AGG - tig0024656:69261-69280 Msa1418990:intron 35.0%
TTGTAGATTGACACTTGCAA+TGG - tig0024656:69360-69379 Msa1418990:intron 35.0%
! TTGGGTTTAAAGTTCTCGTT+GGG + tig0024656:69408-69427 None:intergenic 35.0%
! TTTGGGTTTAAAGTTCTCGT+TGG + tig0024656:69409-69428 None:intergenic 35.0%
! CAATTCTCAGTCCACATTTT+GGG + tig0024656:69426-69445 None:intergenic 35.0%
GCTAGATTCATACAAAATCG+TGG - tig0024656:69618-69637 Msa1418990:intron 35.0%
!! GAACTTAGAAGTATTCACAC+AGG + tig0024656:69703-69722 None:intergenic 35.0%
!! AATTTTGGTCGAACATCTAG+TGG - tig0024656:69810-69829 Msa1418990:intron 35.0%
! CATAGCTTGTGGCAATAAAA+AGG + tig0024656:69836-69855 None:intergenic 35.0%
AGCATCATAATCATAGCTTG+TGG + tig0024656:69847-69866 None:intergenic 35.0%
GATGCTCCTATTGATGAATA+TGG - tig0024656:69861-69880 Msa1418990:intron 35.0%
GACTTCCAAATGAACCAAAA+TGG - tig0024656:69964-69983 Msa1418990:CDS 35.0%
!! TTTTTCAGATGGCTCCATTT+TGG + tig0024656:69981-70000 None:intergenic 35.0%
GCTTGGAAATAAAAACCTTG+AGG - tig0024656:70064-70083 Msa1418990:intron 35.0%
!! ATTTTGTGTCGTAGTTTGCA+AGG + tig0024656:70224-70243 None:intergenic 35.0%
AAACTACGACACAAAATCTG+CGG - tig0024656:70227-70246 Msa1418990:intron 35.0%
ATGGACATAGCTTCCATAAA+AGG - tig0024656:70450-70469 Msa1418990:intron 35.0%
CAATCAAATGTAGTATCCAC+GGG + tig0024656:70482-70501 None:intergenic 35.0%
CCAATCAAATGTAGTATCCA+CGG + tig0024656:70483-70502 None:intergenic 35.0%
CATCATAGCAAATGCACTTT+GGG - tig0024656:70547-70566 Msa1418990:intron 35.0%
GCTGAATTTATGGTAAGAGT+AGG + tig0024656:70773-70792 None:intergenic 35.0%
ACTCTTACCATAAATTCAGC+AGG - tig0024656:70773-70792 Msa1418990:intron 35.0%
AACATGACCTGCTGAATTTA+TGG + tig0024656:70783-70802 None:intergenic 35.0%
ATGAATGTAGGAACTGTGTA+TGG - tig0024656:70913-70932 Msa1418990:intron 35.0%
!! GAAAGTGTTAACCTAAAGGT+CGG - tig0024656:70967-70986 Msa1418990:intron 35.0%
! TTCTTTACTTAGTGTTGCTG+TGG - tig0024656:71002-71021 Msa1418990:intron 35.0%
! TCTTTACTTAGTGTTGCTGT+GGG - tig0024656:71003-71022 Msa1418990:intron 35.0%
!! CACTTTGAAACATGGAATGT+TGG - tig0024656:71168-71187 Msa1418990:intron 35.0%
!! CTTTGAAACATGGAATGTTG+GGG - tig0024656:71170-71189 Msa1418990:intron 35.0%
AACTTCCAGTTATGGTATGA+AGG + tig0024656:71398-71417 None:intergenic 35.0%
GTCATATGTAACATTGGCAA+AGG + tig0024656:71512-71531 None:intergenic 35.0%
CAGATGGTCATATGTAACAT+TGG + tig0024656:71518-71537 None:intergenic 35.0%
TTACCATGTGCTATATATGC+AGG + tig0024656:71682-71701 None:intergenic 35.0%
TGTGATGAATGTAATTACGC+TGG - tig0024656:71703-71722 Msa1418990:intron 35.0%
TGGATAGGTATCATATTCCT+CGG - tig0024656:71862-71881 Msa1418990:CDS 35.0%
TCACCAATGAAATTCCAGTA+GGG + tig0024656:71944-71963 None:intergenic 35.0%
TTCACCAATGAAATTCCAGT+AGG + tig0024656:71945-71964 None:intergenic 35.0%
CTTGAACTACCAGAAAAAGA+TGG + tig0024656:72077-72096 None:intergenic 35.0%
! CATTTCTGCATCCAATCTTT+TGG + tig0024656:72106-72125 None:intergenic 35.0%
CATGTAAAGTTGCTTGCAAA+TGG - tig0024656:72269-72288 Msa1418990:five_prime_UTR 35.0%
! TTAGCTCTTTAGCATTGTGG+AGG + tig0024656:66243-66262 None:intergenic 40.0%
!!! CGGCTTCTAGTTTTTGTTTG+AGG + tig0024656:66479-66498 None:intergenic 40.0%
GCAAAAAGAGTTTCACATGC+TGG - tig0024656:66657-66676 Msa1418990:CDS 40.0%
!!! CCCCTTTTTTCACCATTTTG+TGG - tig0024656:66983-67002 Msa1418990:intron 40.0%
CTGACTAAATGAGATGTCTG+GGG - tig0024656:67256-67275 Msa1418990:intron 40.0%
TGCATAATATATGCAGGGGT+CGG + tig0024656:67289-67308 None:intergenic 40.0%
! TCAGAGGGTGTAATTACCAA+CGG - tig0024656:67596-67615 Msa1418990:CDS 40.0%
GTGGCCAGACTTATTTCAAA+AGG - tig0024656:68166-68185 Msa1418990:intron 40.0%
TTCGTTACATTTCCAGGAGA+AGG + tig0024656:68248-68267 None:intergenic 40.0%
TTCCATTCAGCACAAACGTA+GGG + tig0024656:68435-68454 None:intergenic 40.0%
ATTCCATTCAGCACAAACGT+AGG + tig0024656:68436-68455 None:intergenic 40.0%
TGGAACATACTTGAGCCAAA+CGG + tig0024656:68566-68585 None:intergenic 40.0%
! TTTGGCTCAAGTATGTTCCA+GGG - tig0024656:68566-68585 Msa1418990:CDS 40.0%
! GACAATGAGCCATTTAAGGT+TGG - tig0024656:68604-68623 Msa1418990:intron 40.0%
! AGTTTGTTTCAAACTCAGGG+TGG - tig0024656:68791-68810 Msa1418990:intron 40.0%
! CATTTTGTGTAAGCCTTTCC+AGG + tig0024656:69038-69057 None:intergenic 40.0%
CTGGAAAGGCTTACACAAAA+TGG - tig0024656:69036-69055 Msa1418990:intron 40.0%
TCTAGATACTGGTGTACCTT+GGG - tig0024656:69079-69098 Msa1418990:intron 40.0%
! CCAATTCTCAGTCCACATTT+TGG + tig0024656:69427-69446 None:intergenic 40.0%
! CCAAAATGTGGACTGAGAAT+TGG - tig0024656:69424-69443 Msa1418990:CDS 40.0%
!! TATAGGTACACTGATTTCGG+TGG - tig0024656:69552-69571 Msa1418990:intron 40.0%
TCATAGACCAACTGAAGACT+TGG - tig0024656:69584-69603 Msa1418990:intron 40.0%
!!! TGGCTCCATTTTGGTTCATT+TGG + tig0024656:69972-69991 None:intergenic 40.0%
GAGTCATAGACTTTACCTCA+AGG + tig0024656:70082-70101 None:intergenic 40.0%
GCAACGGTTACATTTGGAAA+TGG - tig0024656:70249-70268 Msa1418990:intron 40.0%
GCAAATATGATCTACCACCT+TGG - tig0024656:70271-70290 Msa1418990:intron 40.0%
! TGTAGTTTTCAACACGGCAA+CGG - tig0024656:70323-70342 Msa1418990:CDS 40.0%
CCGTGGATACTACATTTGAT+TGG - tig0024656:70480-70499 Msa1418990:intron 40.0%
!! CCAAAGTGCATTTGCTATGA+TGG + tig0024656:70549-70568 None:intergenic 40.0%
CCATCATAGCAAATGCACTT+TGG - tig0024656:70546-70565 Msa1418990:intron 40.0%
GCGATTCTTCAGATTATCTG+TGG - tig0024656:70588-70607 Msa1418990:intron 40.0%
AATGTAGGAACTGTGTATGG+AGG - tig0024656:70916-70935 Msa1418990:intron 40.0%
!! TCTTGTTATTGCCGACCTTT+AGG + tig0024656:70981-71000 None:intergenic 40.0%
!! TTGGTCTGCACTTTGAAACA+TGG - tig0024656:71160-71179 Msa1418990:intron 40.0%
TTAGGCCCAGTAACATTGAA+GGG - tig0024656:71195-71214 Msa1418990:intron 40.0%
CTAGACCCTTCAATGTTACT+GGG + tig0024656:71203-71222 None:intergenic 40.0%
TCTAGACCCTTCAATGTTAC+TGG + tig0024656:71204-71223 None:intergenic 40.0%
! TTGGCAGAAATGGTCTTACA+AGG - tig0024656:71245-71264 Msa1418990:intron 40.0%
! TGTTGGATAGGTTGGACTAA+AGG - tig0024656:71359-71378 Msa1418990:intron 40.0%
! GTTGGATAGGTTGGACTAAA+GGG - tig0024656:71360-71379 Msa1418990:intron 40.0%
TTGAGCCTTCATACCATAAC+TGG - tig0024656:71390-71409 Msa1418990:intron 40.0%
AATGGAGGAACTTCCAGTTA+TGG + tig0024656:71406-71425 None:intergenic 40.0%
TGATCCTTGTGTCCAATCAA+TGG + tig0024656:71424-71443 None:intergenic 40.0%
TTGGACACAAGGATCATCAT+TGG - tig0024656:71428-71447 Msa1418990:intron 40.0%
ACAACCTTTGACATGGTACA+AGG - tig0024656:71458-71477 Msa1418990:intron 40.0%
CTTACCTTGTACCATGTCAA+AGG + tig0024656:71465-71484 None:intergenic 40.0%
GCACTAGATATGAGTAGCAT+GGG - tig0024656:71610-71629 Msa1418990:intron 40.0%
AGATATGAGTAGCATGGGAA+AGG - tig0024656:71615-71634 Msa1418990:intron 40.0%
GATATGAGTAGCATGGGAAA+GGG - tig0024656:71616-71635 Msa1418990:intron 40.0%
TGGATAAACGACCAAAGCAT+TGG - tig0024656:71646-71665 Msa1418990:intron 40.0%
! CCACAATTTGTCCTGCATTT+TGG + tig0024656:71742-71761 None:intergenic 40.0%
CCAAAATGCAGGACAAATTG+TGG - tig0024656:71739-71758 Msa1418990:CDS 40.0%
TCTTGGTTGTGCTTGAAGAA+TGG - tig0024656:71910-71929 Msa1418990:exon 40.0%
CTTGGTTGTGCTTGAAGAAT+GGG - tig0024656:71911-71930 Msa1418990:exon 40.0%
TTGGTTGTGCTTGAAGAATG+GGG - tig0024656:71912-71931 Msa1418990:exon 40.0%
TGACCCTACTGGAATTTCAT+TGG - tig0024656:71938-71957 Msa1418990:five_prime_UTR 40.0%
! ATCGATGCTCCATCTTTTTC+TGG - tig0024656:72065-72084 Msa1418990:five_prime_UTR 40.0%
! TCACAAGCATTGCCCGTTTA+AGG + tig0024656:66271-66290 None:intergenic 45.0%
AAAACGATGGGAAGAGAAGG+GGG + tig0024656:66343-66362 None:intergenic 45.0%
GAAAACGATGGGAAGAGAAG+GGG + tig0024656:66344-66363 None:intergenic 45.0%
GGAAAACGATGGGAAGAGAA+GGG + tig0024656:66345-66364 None:intergenic 45.0%
TGGAAAACGATGGGAAGAGA+AGG + tig0024656:66346-66365 None:intergenic 45.0%
CACAAAGCCCTTGTGATTGA+TGG - tig0024656:66739-66758 Msa1418990:intron 45.0%
!! TGTGCTTCTTGGATAGTGGA+TGG + tig0024656:66791-66810 None:intergenic 45.0%
TACACATGTTGGATGGAGGT+TGG + tig0024656:66836-66855 None:intergenic 45.0%
GTTGTACACATGTTGGATGG+AGG + tig0024656:66840-66859 None:intergenic 45.0%
GGATGACCAAACCCACAAAA+TGG + tig0024656:66998-67017 None:intergenic 45.0%
GCATAATATATGCAGGGGTC+GGG + tig0024656:67288-67307 None:intergenic 45.0%
! CAGAGGGTGTAATTACCAAC+GGG - tig0024656:67597-67616 Msa1418990:CDS 45.0%
GGAACATACTTGAGCCAAAC+GGG + tig0024656:68565-68584 None:intergenic 45.0%
! GTTTGGCTCAAGTATGTTCC+AGG - tig0024656:68565-68584 Msa1418990:CDS 45.0%
ATGAGTATGGACCTGTGGAA+TGG - tig0024656:69000-69019 Msa1418990:intron 45.0%
TGAGTATGGACCTGTGGAAT+GGG - tig0024656:69001-69020 Msa1418990:intron 45.0%
!! CACAAAATGGGCTGCTCAAA+TGG - tig0024656:69049-69068 Msa1418990:intron 45.0%
ATGGCTGTAGGTCTAGATAC+TGG - tig0024656:69068-69087 Msa1418990:intron 45.0%
GTCTAGATACTGGTGTACCT+TGG - tig0024656:69078-69097 Msa1418990:intron 45.0%
GGTAAACTTACAACGGGATC+AGG + tig0024656:69128-69147 None:intergenic 45.0%
TGTGTCGTGTCAATCGTATC+AGG - tig0024656:69173-69192 Msa1418990:intron 45.0%
! ATGTGGACTGAGAATTGGTC+TGG - tig0024656:69429-69448 Msa1418990:CDS 45.0%
GAGTATGCCAAGTCTTCAGT+TGG + tig0024656:69594-69613 None:intergenic 45.0%
! TGAGCCAGCTTTGATTTCTG+TGG - tig0024656:70025-70044 Msa1418990:intron 45.0%
GGATCCACAGAAATCAAAGC+TGG + tig0024656:70032-70051 None:intergenic 45.0%
TTTCCAAGCCATGTGACTGT+AGG + tig0024656:70053-70072 None:intergenic 45.0%
! TATGATGGAATCGTCGTCAC+TGG + tig0024656:70534-70553 None:intergenic 45.0%
AGGAACTGTGTATGGAGGAT+TGG - tig0024656:70921-70940 Msa1418990:intron 45.0%
! TTGCTCTGGTCGCACATTTT+AGG - tig0024656:71069-71088 Msa1418990:intron 45.0%
CAAAGTGCAGACCAACATTC+TGG + tig0024656:71155-71174 None:intergenic 45.0%
! ACATGGAATGTTGGGGTGTT+AGG - tig0024656:71177-71196 Msa1418990:intron 45.0%
GTTAGGCCCAGTAACATTGA+AGG - tig0024656:71194-71213 Msa1418990:intron 45.0%
GAGACTTGTCTTGGCAGAAA+TGG - tig0024656:71235-71254 Msa1418990:intron 45.0%
CTGGAAGTTCCTCCATTGAT+TGG - tig0024656:71409-71428 Msa1418990:intron 45.0%
! TCCTCCATTGATTGGACACA+AGG - tig0024656:71417-71436 Msa1418990:intron 45.0%
TCCTTGTGTCCAATCAATGG+AGG + tig0024656:71421-71440 None:intergenic 45.0%
CTACTCATATCTAGTGCCAC+TGG + tig0024656:71607-71626 None:intergenic 45.0%
GGCACTAGATATGAGTAGCA+TGG - tig0024656:71609-71628 Msa1418990:intron 45.0%
GCATGGGAAAGGGTGAAATA+TGG - tig0024656:71626-71645 Msa1418990:intron 45.0%
!! ACCAAAGCATTGGTCGTCAT+TGG - tig0024656:71656-71675 Msa1418990:intron 45.0%
TGGCCTGCATATATAGCACA+TGG - tig0024656:71676-71695 Msa1418990:intron 45.0%
GTGGAGAACCAACACAGAAA+TGG - tig0024656:71758-71777 Msa1418990:CDS 45.0%
GGTATCATATTCCTCGGTCA+TGG - tig0024656:71868-71887 Msa1418990:CDS 45.0%
!!! AAAATTTTAGATTTTAAAAT+AGG + tig0024656:67019-67038 None:intergenic 5.0%
!!! ATTTTAAAATCTAAAATTTT+TGG - tig0024656:67019-67038 Msa1418990:intron 5.0%
!!! TTTTTAATTCAAAAATATTA+TGG + tig0024656:67050-67069 None:intergenic 5.0%
!!! ATTTTAGATAAAATATTTTA+TGG - tig0024656:67195-67214 Msa1418990:intron 5.0%
!!! TTTTTTTTTTTATTATAAGT+TGG - tig0024656:67386-67405 Msa1418990:intron 5.0%
!!! TTAATTTAGAATATATAAAT+TGG + tig0024656:70880-70899 None:intergenic 5.0%
!!! TAATTTTTTTTTTAATCTTT+TGG - tig0024656:71842-71861 Msa1418990:CDS 5.0%
AAACGATGGGAAGAGAAGGG+GGG + tig0024656:66342-66361 None:intergenic 50.0%
GTGAGGTGTGTGCTTCTGAT+GGG + tig0024656:66415-66434 None:intergenic 50.0%
GAGTGGAATGAGTGTACCTC+GGG + tig0024656:66814-66833 None:intergenic 50.0%
GGAGTGGAATGAGTGTACCT+CGG + tig0024656:66815-66834 None:intergenic 50.0%
ATGTTGGATGGAGGTTGGAG+TGG + tig0024656:66831-66850 None:intergenic 50.0%
AATGGACATGAGCCTTCTCC+TGG - tig0024656:68233-68252 Msa1418990:CDS 50.0%
GTCAAGCTAGCACAACAAGC+TGG - tig0024656:68384-68403 Msa1418990:intron 50.0%
GTCCCTACGTTTGTGCTGAA+TGG - tig0024656:68430-68449 Msa1418990:intron 50.0%
TGTGCAGAGGATTTCCCGTT+TGG - tig0024656:68548-68567 Msa1418990:CDS 50.0%
GCTCAAGTATGTTCCAGGGA+TGG - tig0024656:68570-68589 Msa1418990:intron 50.0%
!! TCTGTTCTGAAAGCCATCCC+TGG + tig0024656:68586-68605 None:intergenic 50.0%
CGAGAATGAGTATGGACCTG+TGG - tig0024656:68995-69014 Msa1418990:intron 50.0%
GGACCTGTGGAATGGGAAAT+TGG - tig0024656:69008-69027 Msa1418990:intron 50.0%
GCACCAATTTCCCATTCCAC+AGG + tig0024656:69014-69033 None:intergenic 50.0%
! GAATGGGAAATTGGTGCTCC+TGG - tig0024656:69017-69036 Msa1418990:intron 50.0%
! GGAAATTGGTGCTCCTGGAA+AGG - tig0024656:69022-69041 Msa1418990:intron 50.0%
TCTTGCTTGCACATGTCCCA+AGG + tig0024656:69098-69117 None:intergenic 50.0%
CGAACACGCTGATACTGCTA+AGG + tig0024656:69149-69168 None:intergenic 50.0%
CTGTGGATCCTACAGTCACA+TGG - tig0024656:70042-70061 Msa1418990:intron 50.0%
GATCCTACAGTCACATGGCT+TGG - tig0024656:70047-70066 Msa1418990:intron 50.0%
AAGGAATGCAGCACAGACAC+TGG + tig0024656:70205-70224 None:intergenic 50.0%
CGACACAAAATCTGCGGCAA+CGG - tig0024656:70233-70252 Msa1418990:intron 50.0%
TCTGCGGCAACGGTTACATT+TGG - tig0024656:70243-70262 Msa1418990:intron 50.0%
AGAATGCTGACAGACCAAGG+TGG + tig0024656:70288-70307 None:intergenic 50.0%
GGAAGAATGCTGACAGACCA+AGG + tig0024656:70291-70310 None:intergenic 50.0%
! CCACGGGAGTCATCCTTTTA+TGG + tig0024656:70466-70485 None:intergenic 50.0%
CCATAAAAGGATGACTCCCG+TGG - tig0024656:70463-70482 Msa1418990:intron 50.0%
! TAGTGTTGCTGTGGGTCTTC+CGG - tig0024656:71011-71030 Msa1418990:intron 50.0%
! TGTTCGATGCACACCCCTTT+TGG - tig0024656:71046-71065 Msa1418990:intron 50.0%
TGCGACCAGAGCAACCAAAA+GGG + tig0024656:71063-71082 None:intergenic 50.0%
GCCAATGACGACCAATGCTT+TGG + tig0024656:71660-71679 None:intergenic 50.0%
GGTCATGGTTGAGTCCAAGT+GGG - tig0024656:71883-71902 Msa1418990:CDS 50.0%
ACAACCAAGACGTTCCCACT+TGG + tig0024656:71900-71919 None:intergenic 50.0%
GTTGTGCTTGAAGAATGGGG+AGG - tig0024656:71915-71934 Msa1418990:five_prime_UTR 50.0%
GATGGGTGAGCTGAGGTGAA+GGG + tig0024656:66398-66417 None:intergenic 55.0%
! TGATGGGTGAGCTGAGGTGA+AGG + tig0024656:66399-66418 None:intergenic 55.0%
! TGCTTCTGATGGGTGAGCTG+AGG + tig0024656:66405-66424 None:intergenic 55.0%
GGTGAGGTGTGTGCTTCTGA+TGG + tig0024656:66416-66435 None:intergenic 55.0%
CGGGTGTGCTTCTTGGATAG+TGG + tig0024656:66795-66814 None:intergenic 55.0%
! CTATCCAAGAAGCACACCCG+AGG - tig0024656:66795-66814 Msa1418990:CDS 55.0%
TGTACCTCGGGTGTGCTTCT+TGG + tig0024656:66802-66821 None:intergenic 55.0%
! ATGTGCATGTTGGTGCCCGT+TGG + tig0024656:67615-67634 None:intergenic 55.0%
TGGGCTGCTCAAATGGCTGT+AGG - tig0024656:69056-69075 Msa1418990:intron 55.0%
! GGACTGAGAATTGGTCTGGC+TGG - tig0024656:69433-69452 Msa1418990:CDS 55.0%
GGAATCGTCGTCACTGGAGT+AGG + tig0024656:70528-70547 None:intergenic 55.0%
!! CACACCCCTTTTGGTTGCTC+TGG - tig0024656:71055-71074 Msa1418990:intron 55.0%
GCGACCAGAGCAACCAAAAG+GGG + tig0024656:71062-71081 None:intergenic 55.0%
GTGCGACCAGAGCAACCAAA+AGG + tig0024656:71064-71083 None:intergenic 55.0%
CTTGGACTCAACCATGACCG+AGG + tig0024656:71882-71901 None:intergenic 55.0%
CGGTCATGGTTGAGTCCAAG+TGG - tig0024656:71882-71901 Msa1418990:CDS 55.0%
GAGTCCAAGTGGGAACGTCT+TGG - tig0024656:71893-71912 Msa1418990:CDS 55.0%
TCGTCGTCACTGGAGTAGGC+AGG + tig0024656:70524-70543 None:intergenic 60.0%
ACAACCTTTGACGCGCCGAG+TGG - tig0024656:71574-71593 Msa1418990:intron 60.0%
GAATGGGGAGGTGACCCTAC+TGG - tig0024656:71927-71946 Msa1418990:five_prime_UTR 60.0%
GCCACTGGATCGCTGCCACT+CGG + tig0024656:71592-71611 None:intergenic 65.0%
GCTGCCACTCGGCGCGTCAA+AGG + tig0024656:71581-71600 None:intergenic 70.0%
GCCGAGTGGCAGCGATCCAG+TGG - tig0024656:71588-71607 Msa1418990:intron 70.0%
Chromosome Type Strat End Strand Name
tig0024656 gene 66229 72321 66229 ID=Msa1418990;Name=Msa1418990
tig0024656 mRNA 66229 72321 66229 ID=Msa1418990-mRNA-1;Parent=Msa1418990;Name=Msa1418990-mRNA-1;_AED=0.07;_eAED=0.07;_QI=408|1|1|1|1|1|18|347|730
tig0024656 exon 66229 66681 66229 ID=Msa1418990-mRNA-1:exon:687;Parent=Msa1418990-mRNA-1
tig0024656 exon 66771 66976 66771 ID=Msa1418990-mRNA-1:exon:686;Parent=Msa1418990-mRNA-1
tig0024656 exon 67071 67181 67071 ID=Msa1418990-mRNA-1:exon:685;Parent=Msa1418990-mRNA-1
tig0024656 exon 67284 67394 67284 ID=Msa1418990-mRNA-1:exon:684;Parent=Msa1418990-mRNA-1
tig0024656 exon 67518 67627 67518 ID=Msa1418990-mRNA-1:exon:683;Parent=Msa1418990-mRNA-1
tig0024656 exon 67717 67826 67717 ID=Msa1418990-mRNA-1:exon:682;Parent=Msa1418990-mRNA-1
tig0024656 exon 67929 68104 67929 ID=Msa1418990-mRNA-1:exon:681;Parent=Msa1418990-mRNA-1
tig0024656 exon 68206 68370 68206 ID=Msa1418990-mRNA-1:exon:680;Parent=Msa1418990-mRNA-1
tig0024656 exon 68465 68586 68465 ID=Msa1418990-mRNA-1:exon:679;Parent=Msa1418990-mRNA-1
tig0024656 exon 68668 68755 68668 ID=Msa1418990-mRNA-1:exon:678;Parent=Msa1418990-mRNA-1
tig0024656 exon 68888 68993 68888 ID=Msa1418990-mRNA-1:exon:677;Parent=Msa1418990-mRNA-1
tig0024656 exon 69096 69184 69096 ID=Msa1418990-mRNA-1:exon:676;Parent=Msa1418990-mRNA-1
tig0024656 exon 69414 69557 69414 ID=Msa1418990-mRNA-1:exon:675;Parent=Msa1418990-mRNA-1
tig0024656 exon 69718 69810 69718 ID=Msa1418990-mRNA-1:exon:674;Parent=Msa1418990-mRNA-1
tig0024656 exon 69929 69995 69929 ID=Msa1418990-mRNA-1:exon:673;Parent=Msa1418990-mRNA-1
tig0024656 exon 70090 70202 70090 ID=Msa1418990-mRNA-1:exon:672;Parent=Msa1418990-mRNA-1
tig0024656 exon 70291 70386 70291 ID=Msa1418990-mRNA-1:exon:671;Parent=Msa1418990-mRNA-1
tig0024656 exon 71734 72321 71734 ID=Msa1418990-mRNA-1:exon:670;Parent=Msa1418990-mRNA-1
tig0024656 five_prime_UTR 71914 72321 71914 ID=Msa1418990-mRNA-1:five_prime_utr;Parent=Msa1418990-mRNA-1
tig0024656 CDS 71734 71913 71734 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 70291 70386 70291 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 70090 70202 70090 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 69929 69995 69929 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 69718 69810 69718 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 69414 69557 69414 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 69096 69184 69096 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 68888 68993 68888 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 68668 68755 68668 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 68465 68586 68465 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 68206 68370 68206 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 67929 68104 67929 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 67717 67826 67717 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 67518 67627 67518 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 67284 67394 67284 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 67071 67181 67071 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 66771 66976 66771 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 CDS 66576 66681 66576 ID=Msa1418990-mRNA-1:cds;Parent=Msa1418990-mRNA-1
tig0024656 three_prime_UTR 66229 66575 66229 ID=Msa1418990-mRNA-1:three_prime_utr;Parent=Msa1418990-mRNA-1
Gene Sequence

>Msa1418990

ATGATGGAGAATTTAACAATGCAAAAAGAGTTTCACATGCTGGGGTTGATTTTATTATTGTCTTTGTGGGTTTGTGGTGTTACTGCTTCAGTGAGTTATGATCACAAAGCCCTTGTGATTGATGGACAAAGAAGAATTTTGATATCTGGCTCCATCCACTATCCAAGAAGCACACCCGAGATGTGGCCAGACTTATTTCAAAAGGCTAAAGATGGAGGCCTTGATGTTATTCAAACCTATGTATTTTGGAATGGACATGAGCCTTCTCCTGGAAATTATTACTTCGAAGATAGATTTGACTTAGTAAAGTTTGTCAAGCTAGCACAACAAGCTGGTCTTTATGTTCACTTGCGTATTGGTCCCTACGTTTGTGCTGAATGGAATTATGGAGGATTTCCCGTTTGGCTCAAGTATGTTCCAGGGATGGCTTTCAGAACAGACAATGAGCCATTTAAGGCTGCTATGCAAAAATTCACGACCAAAATTGTGAACATGATGAAAGCAGAGAGTTTGTTTCAAACTCAGGGTGGTCCAATAATTATGTCTCAGATCGAGAATGAGTATGGACCTGTGGAATGGGAAATTGGTGCTCCTGGAAAGGCTTACACAAAATGGGCTGCTCAAATGGCTGTAGGTCTAGATACTGGTGTACCTTGGGACATGTGCAAGCAAGAAGACGCACCTGATCCCGTTATTGACACTTGCAATGGATATTACTGTGAAAACTTCACTCCCAACGAGAACTTTAAACCCAAAATGTGGACTGAGAATTGGTCTGGCTGGTACACTGATTTCGGTGGTGCTCTATCTCATAGACCAACTGAAGACTTGGCATACTCAGTTGCTAGATTCATACAAAATCGTGGCTCCTTTGTTAACTACTATATGTATCATGGAGGAACTAATTTTGGTCGAACATCTAGTGGCCTTTTTATTGCCACAAGCTATGATTATGATGCTCCTATTGATGAATATGGACTTCCAAATGAACCAAAATGGAGCCATCTGAAAAATTTACATAAAGCAATAAAACAATGTGAGCCAGCTTTGATTTCTGTGGATCCTACAGTCACATGGCTTGGAAATAAAAACCTTGAGGCGCATGTGTACTACGTAAGTACCAGTGTCTGTGCTGCATTCCTTGCAAACTACGACACAAAATCTGCGGCAACGGTTACATTTGGAAATGGCAAATATGATCTACCACCTTGGTCTGTCAGCATTCTTCCTGATTGCAAAACTGTAGTTTTCAACACGGCAACGGTTAATGGACATAGCTTCCATAAAAGGATGACTCCCGTGGATACTACATTTGATTGGCAGTCATACAGTGAAGAGCCTGCCTACTCCAGTGACGACGATTCCATCATAGCAAATGCACTTTGGGAGCAAATCAACGTTACTCGCGATTCTTCAGATTATCTGTGGTATTTGACAGATGTAAACATTAGTCCTAATGAAAGTTTTGTAAAGAATGGTCAATCTCCTACTCTTACCATAAATTCAGCAGGTCATGTTCTACATGTTTTTGTTAATGGTCAACTTTCAGGAACTGTGTATGGAGGATTGGATAATCCTAAATTAACATTTAGTGAAAGTGTTAACCTAAAGGTCGGCAATAACAAGATTTCTTTACTTAGTGTTGCTGTGGGTCTTCCGAATGTTGGTCTGCACTTTGAAACATGGAATGTTGGGGTGTTAGGCCCAGTAACATTGAAGGGTCTAGATGAGGGGACAAGAGACTTGTCTTGGCAGAAATGGTCTTACAAGGTTGGACTAAAGGGTGAATCTTTGAGCCTTCATACCATAACTGGAAGTTCCTCCATTGATTGGACACAAGGATCATCATTGGTTAAAAAACAACCTTTGACATGGTACAAGACAACCTTTGACGCGCCGAGTGGCAGCGATCCAGTGGCACTAGATATGAGTAGCATGGGAAAGGGTGAAATATGGATAAACGACCAAAGCATTGGTCGTCATTGGCCTGCATATATAGCACATGGTAATTGTGATGAATGTAATTACGCTGGAACTTTTACTAATCCAAAATGCAGGACAAATTGTGGAGAACCAACACAGAAATGGTATCATATTCCTCGGTCATGGTTGAGTCCAAGTGGGAACGTCTTGGTTGTGCTTGAAGAATGGGGAGGTGACCCTACTGGAATTTCATTGGTGAAAAGAACATGA
Protein sequence

>Msa1418990

MMENLTMQKEFHMLGLILLLSLWVCGVTASVSYDHKALVIDGQRRILISGSIHYPRSTPEMWPDLFQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRFDLVKFVKLAQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGMAFRTDNEPFKAAMQKFTTKIVNMMKAESLFQTQGGPIIMSQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWDMCKQEDAPDPVIDTCNGYYCENFTPNENFKPKMWTENWSGWYTDFGGALSHRPTEDLAYSVARFIQNRGSFVNYYMYHGGTNFGRTSSGLFIATSYDYDAPIDEYGLPNEPKWSHLKNLHKAIKQCEPALISVDPTVTWLGNKNLEAHVYYVSTSVCAAFLANYDTKSAATVTFGNGKYDLPPWSVSILPDCKTVVFNTATVNGHSFHKRMTPVDTTFDWQSYSEEPAYSSDDDSIIANALWEQINVTRDSSDYLWYLTDVNISPNESFVKNGQSPTLTINSAGHVLHVFVNGQLSGTVYGGLDNPKLTFSESVNLKVGNNKISLLSVAVGLPNVGLHFETWNVGVLGPVTLKGLDEGTRDLSWQKWSYKVGLKGESLSLHTITGSSSIDWTQGSSLVKKQPLTWYKTTFDAPSGSDPVALDMSSMGKGEIWINDQSIGRHWPAYIAHGNCDECNYAGTFTNPKCRTNCGEPTQKWYHIPRSWLSPSGNVLVVLEEWGGDPTGISLVKRT*