AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097390 MtrunA17_Chr1g0152571 97.808 730 16 0 1 730 1 730 0.0 1495
Msa0097390 MtrunA17_Chr2g0299161 79.178 730 147 2 1 730 2 726 0.0 1232
Msa0097390 MtrunA17_Chr8g0342001 68.552 725 224 3 7 729 1 723 0.0 1079
Msa0097390 MtrunA17_Chr2g0330291 70.904 708 202 3 24 729 21 726 0.0 1061
Msa0097390 MtrunA17_Chr8g0372421 61.944 720 270 4 13 730 10 727 0.0 964
Msa0097390 MtrunA17_Chr3g0142001 63.056 720 261 4 14 730 9 726 0.0 962
Msa0097390 MtrunA17_Chr1g0155701 63.262 705 254 5 27 729 25 726 0.0 958
Msa0097390 MtrunA17_Chr5g0404841 61.970 731 269 7 2 730 1 724 0.0 952
Msa0097390 MtrunA17_Chr2g0326481 59.254 724 274 8 17 729 6 719 0.0 866
Msa0097390 MtrunA17_Chr4g0029301 56.868 728 285 9 17 726 6 722 0.0 827
Msa0097390 MtrunA17_Chr3g0130711 54.910 723 312 6 18 729 14 733 0.0 786
Msa0097390 MtrunA17_Chr8g0378221 50.931 752 320 10 17 726 30 774 0.0 758
Msa0097390 MtrunA17_Chr3g0124931 50.621 725 307 17 10 726 6 687 0.0 679
Msa0097390 MtrunA17_Chr3g0130721 50.622 723 314 13 13 726 10 698 0.0 676
Msa0097390 MtrunA17_Chr5g0408371 49.083 709 345 10 31 730 28 729 0.0 674
Msa0097390 MtrunA17_Chr5g0406921 48.515 707 347 10 31 726 28 728 0.0 672
Msa0097390 MtrunA17_Chr2g0301001 49.579 712 336 13 31 726 27 731 0.0 662
Msa0097390 MtrunA17_Chr4g0037031 45.691 731 363 12 4 727 8 711 0.0 652
Msa0097390 MtrunA17_Chr3g0077531 46.492 727 363 12 13 722 5 722 0.0 650
Msa0097390 MtrunA17_Chr3g0145581 45.851 711 346 14 24 727 29 707 0.0 631
Msa0097390 MtrunA17_Chr2g0326491 57.700 513 163 5 17 477 6 516 0.0 605
Msa0097390 MtrunA17_Chr2g0326441 68.794 282 86 1 17 296 6 287 4.28e-146 429
Msa0097390 MtrunA17_Chr2g0326451 51.914 418 178 8 325 729 23 430 3.59e-131 399
Msa0097390 MtrunA17_Chr4g0071281 54.110 292 84 2 430 721 2 243 8.18e-99 305
Msa0097390 MtrunA17_Chr2g0326521 46.479 213 84 5 521 729 7 193 7.15e-51 179
Msa0097390 MtrunA17_Chr4g0071291 59.091 132 22 1 27 158 18 117 6.22e-47 163
Msa0097390 MtrunA17_Chr8g0372581 53.191 141 45 2 152 291 9 129 1.96e-44 156
Msa0097390 MtrunA17_Chr5g0405781 45.503 189 78 3 179 367 48 211 1.91e-41 154
Msa0097390 MtrunA17_Chr2g0330191 32.622 328 184 9 41 339 64 383 4.91e-33 135
Msa0097390 MtrunA17_Chr2g0307981 30.970 268 149 7 455 718 56 291 8.83e-29 117
Msa0097390 MtrunA17_Chr4g0021711 73.333 45 11 1 152 196 47 90 1.15e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097390 AT4G26140.1 70.069 725 210 6 8 730 7 726 0.0 1098
Msa0097390 AT4G26140.7 67.867 750 209 7 8 730 7 751 0.0 1083
Msa0097390 AT5G56870.1 71.053 722 204 5 9 730 8 724 0.0 1068
Msa0097390 AT3G52840.2 67.350 732 232 4 3 730 51 779 0.0 1066
Msa0097390 AT3G13750.1 69.091 715 217 3 17 729 20 732 0.0 1064
Msa0097390 AT3G52840.1 68.627 714 221 3 17 730 15 725 0.0 1062
Msa0097390 AT4G26140.9 67.598 716 200 7 8 696 7 717 0.0 1026
Msa0097390 AT4G36360.2 62.901 717 258 5 16 730 22 732 0.0 968
Msa0097390 AT4G36360.1 62.901 717 258 5 16 730 22 732 0.0 968
Msa0097390 AT1G45130.1 62.691 721 261 5 16 730 12 730 0.0 959
Msa0097390 AT4G26140.3 70.806 620 176 5 8 627 7 621 0.0 936
Msa0097390 AT4G26140.2 70.806 620 176 5 8 627 7 621 0.0 936
Msa0097390 AT4G26140.6 70.579 622 176 6 8 627 7 623 0.0 931
Msa0097390 AT2G28470.1 59.777 716 269 8 26 729 27 735 0.0 881
Msa0097390 AT2G28470.3 59.777 716 269 8 26 729 27 735 0.0 881
Msa0097390 AT2G28470.2 59.777 716 269 8 26 729 21 729 0.0 880
Msa0097390 AT2G28470.4 59.777 716 269 8 26 729 21 729 0.0 880
Msa0097390 AT1G45130.2 61.778 641 241 4 92 730 13 651 0.0 847
Msa0097390 AT2G28470.5 59.531 682 257 8 25 694 26 700 0.0 830
Msa0097390 AT4G26140.8 71.350 548 150 6 8 553 7 549 0.0 827
Msa0097390 AT4G26140.4 68.412 573 149 7 8 553 7 574 0.0 814
Msa0097390 AT4G26140.5 68.412 573 149 7 8 553 7 574 0.0 814
Msa0097390 AT5G63810.1 54.608 727 316 6 13 729 14 736 0.0 795
Msa0097390 AT2G32810.1 51.974 760 326 11 1 726 1 755 0.0 774
Msa0097390 AT2G32810.2 51.974 760 326 11 1 726 1 755 0.0 773
Msa0097390 AT5G20710.1 48.686 723 355 10 14 726 12 728 0.0 684
Msa0097390 AT5G63800.1 48.980 735 329 15 5 726 1 702 0.0 666
Msa0097390 AT1G77410.1 48.061 722 329 15 14 726 8 692 0.0 653
Msa0097390 AT1G77410.3 47.730 727 329 16 14 726 8 697 0.0 648
Msa0097390 AT1G31740.1 45.753 730 332 13 13 726 1 682 0.0 634
Msa0097390 AT2G16730.1 45.087 692 347 9 31 716 44 708 0.0 617
Msa0097390 AT4G35010.1 44.075 692 354 10 31 716 41 705 0.0 596
Msa0097390 AT4G38590.1 44.078 667 337 11 61 719 1 639 0.0 560
Msa0097390 AT4G38590.2 41.313 731 372 14 12 719 7 703 0.0 553
Msa0097390 AT1G77410.2 46.777 605 276 15 131 726 19 586 2.12e-173 514
Msa0097390 AT1G77410.4 46.777 605 276 15 131 726 19 586 2.12e-173 514
Msa0097390 AT5G20710.2 43.371 528 284 9 209 726 1 523 2.33e-143 434
Msa0097390 AT2G04060.1 34.865 370 163 10 296 663 23 316 1.39e-50 184
Msa0097390 AT1G72990.3 36.061 330 174 9 41 341 18 339 1.21e-44 170
Msa0097390 AT1G72990.1 36.061 330 174 9 41 341 73 394 2.24e-44 170
Msa0097390 AT1G72990.4 36.061 330 174 9 41 341 73 394 2.24e-44 170
Msa0097390 AT1G72990.2 34.483 319 172 9 52 341 22 332 1.83e-38 152
Msa0097390 AT2G04062.1 39.888 178 86 2 25 202 1 157 2.04e-33 126

Find 219 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATATTAATTTGGTAATT+TGG 0.113818 1_3:+3196068 None:intergenic
TTATTCAAACCTATGTATTT+TGG 0.134516 1_3:-3199851 Msa0097390:CDS
AAGAGAAACAAATTTATTTA+TGG 0.147269 1_3:+3195828 None:intergenic
CCACAATTTGTCCTGCATTT+TGG 0.151033 1_3:+3196324 None:intergenic
TTTGTTAATGGTCAACTTTC+AGG 0.158124 1_3:-3197251 Msa0097390:intron
CCAATTCTCAGTCCACATTT+TGG 0.160554 1_3:+3198639 None:intergenic
TTTACAAAGCCAAACTATTT+TGG 0.166100 1_3:-3195916 Msa0097390:three_prime_UTR
AACATGACCTGCTGAATTTA+TGG 0.167665 1_3:+3197283 None:intergenic
AACAGACAATGAGCCATTTA+AGG 0.176309 1_3:-3199461 Msa0097390:intron
TTTACCTGAGACATAATTAT+TGG 0.179827 1_3:+3199246 None:intergenic
ACTAATTTCATGCAGGTTAA+TGG 0.191236 1_3:-3197632 Msa0097390:intron
AAATTTAAACCATATTAATT+TGG 0.205822 1_3:+3196060 None:intergenic
CTTTCACTAAATGTTAATTT+AGG 0.219363 1_3:+3197114 None:intergenic
TAAGAGTAGAAAGGTGAATA+AGG 0.219467 1_3:+3201549 None:intergenic
CAAATTTATTTATGGCAAAA+TGG 0.222033 1_3:+3195836 None:intergenic
TTTCATCATGTTCACAATTT+TGG 0.227558 1_3:+3199299 None:intergenic
CTGGAAAGGCTTACACAAAA+TGG 0.230100 1_3:-3199027 Msa0097390:CDS
GTTTGTGCTGAATGGAATTA+TGG 0.235478 1_3:-3199623 Msa0097390:CDS
ATTGAAACTCCAACCTTAAA+TGG 0.236195 1_3:+3199448 None:intergenic
ACCAAATTACCAAATTAATA+TGG 0.255729 1_3:-3196069 Msa0097390:three_prime_UTR
TATCATGGAGGAACTAATTT+TGG 0.268539 1_3:-3198268 Msa0097390:CDS
AATATCTTCGTTACATTTCC+AGG 0.270788 1_3:+3199810 None:intergenic
CATTTCTGCATCCAATCTTT+TGG 0.273132 1_3:+3195960 None:intergenic
TTGAGCCTTCATACCATAAC+TGG 0.288620 1_3:-3196673 Msa0097390:CDS
TCTTGTTATTGCCGACCTTT+AGG 0.289024 1_3:+3197085 None:intergenic
CAATATTCACCAAAATAGTT+TGG 0.300815 1_3:+3195907 None:intergenic
TCTAGACCCTTCAATGTTAC+TGG 0.308225 1_3:+3196862 None:intergenic
CATAGCTTGTGGCAATAAAA+AGG 0.308874 1_3:+3198230 None:intergenic
TTCTATAGGTACACTGATTT+CGG 0.310712 1_3:-3198514 Msa0097390:intron
CTCCTTTGTTAACTACTATA+TGG 0.312217 1_3:-3198422 Msa0097390:intron
CACAAAATGGGCTGCTCAAA+TGG 0.319547 1_3:-3199014 Msa0097390:CDS
ATGGACATAGCTTCCATAAA+AGG 0.323182 1_3:-3197613 Msa0097390:CDS
GTTTGGCTCAAGTATGTTCC+AGG 0.324279 1_3:-3199496 Msa0097390:CDS
TGTACCTCGGGTGTGCTTCT+TGG 0.329719 1_3:+3201262 None:intergenic
TGTGCAGAGGATTTCCTGTT+TGG 0.333950 1_3:-3199513 Msa0097390:intron
GCATGGGAAAGGGTGAAATA+TGG 0.334337 1_3:-3196437 Msa0097390:CDS
CTTTATGTTCACTTGCGTAT+TGG 0.343254 1_3:-3199653 Msa0097390:CDS
TAGTGTTGCTGTGGGTCTTC+CGG 0.356885 1_3:-3197052 Msa0097390:intron
GACTTCCAAATGAACCAAAA+TGG 0.361446 1_3:-3198099 Msa0097390:CDS
TCAAGTTTACACCAAAAGAT+TGG 0.366104 1_3:-3195971 Msa0097390:three_prime_UTR
CATCATAGCAAATGCACTTT+GGG 0.376087 1_3:-3197516 Msa0097390:CDS
TGCATACCATATTCATCAAT+AGG 0.379546 1_3:+3198196 None:intergenic
CACAAAGCCCTTGTGATTGA+TGG 0.381962 1_3:-3201322 Msa0097390:CDS
CTGGAAGTTCCTCCATTGAT+TGG 0.382186 1_3:-3196654 Msa0097390:CDS
GTTACAAGCTCTATAATTCA+TGG 0.383874 1_3:+3195882 None:intergenic
AGAGCTAAAGTTTCCTTAAC+GGG 0.386352 1_3:-3201805 Msa0097390:five_prime_UTR
TTCTTTACAAAACTTTCATT+AGG 0.386816 1_3:+3197326 None:intergenic
TGATAGATCGAGAATGAGTA+TGG 0.388987 1_3:-3199076 Msa0097390:intron
GGACCTGTGGAATGGGAAAT+TGG 0.390507 1_3:-3199055 Msa0097390:CDS
GATGCTCCTATTGATGAATA+TGG 0.390606 1_3:-3198202 Msa0097390:intron
CCAAAGTGCATTTGCTATGA+TGG 0.390990 1_3:+3197517 None:intergenic
ACATGGAATGTTGGGGTGTT+AGG 0.391351 1_3:-3196886 Msa0097390:CDS
TCTGCGGCAACGGTTACATT+TGG 0.396362 1_3:-3197820 Msa0097390:CDS
CCAAAATGTGGACTGAGAAT+TGG 0.399232 1_3:-3198639 Msa0097390:CDS
TTCACAAGCATTGCCCGTTA+AGG 0.399673 1_3:+3201792 None:intergenic
TATATTTGATTGTAGTATCA+TGG 0.404132 1_3:-3198283 Msa0097390:intron
AATGGACATGAGCCTTCTCC+TGG 0.408664 1_3:-3199828 Msa0097390:CDS
CATGTAAAGTTGCTTGCAAA+TGG 0.412650 1_3:-3195794 Msa0097390:three_prime_UTR
AAGAGCTAAAGTTTCCTTAA+CGG 0.416490 1_3:-3201806 Msa0097390:five_prime_UTR
GAGACTTGTCTTGGCAGAAA+TGG 0.417613 1_3:-3196828 Msa0097390:CDS
CCATCATAGCAAATGCACTT+TGG 0.421070 1_3:-3197517 Msa0097390:CDS
GGAACATACTTGAGCCAAAC+AGG 0.423416 1_3:+3199499 None:intergenic
GTCCCTACGTTTGTGCTGAA+TGG 0.427816 1_3:-3199631 Msa0097390:CDS
TCTTTACTTAGTGTTGCTGT+GGG 0.428806 1_3:-3197060 Msa0097390:CDS
GCAACGGTTACATTTGGAAA+TGG 0.429102 1_3:-3197814 Msa0097390:CDS
ACCAAAGCATTGGTCGTCAT+TGG 0.431882 1_3:-3196407 Msa0097390:CDS
GCCAATGACGACCAATGCTT+TGG 0.432093 1_3:+3196406 None:intergenic
TTCTTTACTTAGTGTTGCTG+TGG 0.433115 1_3:-3197061 Msa0097390:CDS
AACAAAAGACACACCATTGT+TGG 0.435048 1_3:-3201494 Msa0097390:five_prime_UTR
AGAGAGTTTGTTTCAAACTC+AGG 0.436146 1_3:-3199274 Msa0097390:CDS
TTATTGTCTTTGTGGGTTTG+TGG 0.439850 1_3:-3201370 Msa0097390:CDS
ACAAAAGACACACCATTGTT+GGG 0.443066 1_3:-3201493 Msa0097390:five_prime_UTR
TGTGAATGATTTAGAAGAGC+AGG 0.443201 1_3:-3201763 Msa0097390:five_prime_UTR
TGACCCTACTGGAATTTCAT+TGG 0.446479 1_3:-3196125 Msa0097390:CDS
CTTGGTTGTGCTTGAAGAAT+GGG 0.453865 1_3:-3196152 Msa0097390:CDS
TTGGACACAAGGATCATCAT+TGG 0.454214 1_3:-3196635 Msa0097390:CDS
AAGAGTAGAAAGGTGAATAA+GGG 0.454282 1_3:+3201550 None:intergenic
TTCGTTACATTTCCAGGAGA+AGG 0.456508 1_3:+3199816 None:intergenic
GTTGGATAGGTTGGACTAAA+GGG 0.457143 1_3:-3196703 Msa0097390:intron
TGGAAAGGCTTACACAAAAT+GGG 0.465526 1_3:-3199026 Msa0097390:CDS
GTGGAGAACCAACACAGAAA+TGG 0.465677 1_3:-3196305 Msa0097390:intron
TAGTGAAAGTGTTAACCTAA+AGG 0.466295 1_3:-3197100 Msa0097390:CDS
GGTAAACTTACAACGGGATC+AGG 0.468492 1_3:+3198938 None:intergenic
AAATCTTACCATTTCTGTGT+TGG 0.468836 1_3:+3196297 None:intergenic
TCAAATTAATACCAGAATGT+TGG 0.472200 1_3:-3196922 Msa0097390:intron
GAAAACGATGGGAAGAGAAG+GGG 0.474585 1_3:+3201720 None:intergenic
TGGTCCAATAATTATGTCTC+AGG 0.477103 1_3:-3199250 Msa0097390:intron
TTGGGTTTAAAGTTCTCGTT+GGG 0.479071 1_3:+3198658 None:intergenic
ACTTTGAAACATGGAATGTT+GGG 0.479098 1_3:-3196894 Msa0097390:CDS
TTATTTCAAAAGGCTAAAGA+TGG 0.480940 1_3:-3199885 Msa0097390:CDS
GTGGCCAGACTTATTTCAAA+AGG 0.481426 1_3:-3199895 Msa0097390:CDS
AAATTTGTTTCTCTTTACAT+TGG 0.482332 1_3:-3195820 Msa0097390:three_prime_UTR
CGGGTGTGCTTCTTGGATAG+TGG 0.483949 1_3:+3201269 None:intergenic
TTTGTGCTGAATGGAATTAT+GGG 0.485197 1_3:-3199622 Msa0097390:intron
AATGGAGGAACTTCCAGTTA+TGG 0.487302 1_3:+3196660 None:intergenic
CACTTTGAAACATGGAATGT+TGG 0.488183 1_3:-3196895 Msa0097390:CDS
TCTTGGTTGTGCTTGAAGAA+TGG 0.488347 1_3:-3196153 Msa0097390:CDS
TCTGTTCTGAAAGCCATCCC+TGG 0.489582 1_3:+3199478 None:intergenic
GTCTAGATACTGGTGTACCT+TGG 0.490231 1_3:-3198985 Msa0097390:CDS
TCTAGATACTGGTGTACCTT+GGG 0.490711 1_3:-3198984 Msa0097390:CDS
GGAAAACGATGGGAAGAGAA+GGG 0.498567 1_3:+3201719 None:intergenic
TGATATTTATAAGAGTAGAA+AGG 0.499445 1_3:+3201540 None:intergenic
CGACACAAAATCTGCGGCAA+CGG 0.500314 1_3:-3197830 Msa0097390:CDS
CCGTGGATACTACATTTGAT+TGG 0.501200 1_3:-3197583 Msa0097390:CDS
TGGAAAACGATGGGAAGAGA+AGG 0.501436 1_3:+3201718 None:intergenic
GAATGGGGAGGTGACCCTAC+TGG 0.503961 1_3:-3196136 Msa0097390:CDS
GATCCTACAGTCACATGGCT+TGG 0.504519 1_3:-3198016 Msa0097390:CDS
GGTGAGGTGTGTGCTTCTGA+TGG 0.505902 1_3:+3201648 None:intergenic
CCAAAATGCAGGACAAATTG+TGG 0.507299 1_3:-3196324 Msa0097390:CDS
ATGGCTGTAGGTCTAGATAC+TGG 0.511595 1_3:-3198995 Msa0097390:CDS
GCTGCCACTCGGCGCGTCAA+AGG 0.512668 1_3:+3196485 None:intergenic
GAATGGGAAATTGGTGCTCC+TGG 0.513051 1_3:-3199046 Msa0097390:CDS
TGTTGGATAGGTTGGACTAA+AGG 0.513449 1_3:-3196704 Msa0097390:intron
ATGTGGACTGAGAATTGGTC+TGG 0.514008 1_3:-3198634 Msa0097390:CDS
GCTCAAGTATGTTCCAGGGA+TGG 0.514701 1_3:-3199491 Msa0097390:CDS
AATAAGGGACTTAGAGAAAA+CGG 0.514949 1_3:+3201565 None:intergenic
AAAACGATGGGAAGAGAAGG+GGG 0.516601 1_3:+3201721 None:intergenic
GAGAGTTTGTTTCAAACTCA+GGG 0.516652 1_3:-3199273 Msa0097390:CDS
CTAGACCCTTCAATGTTACT+GGG 0.516715 1_3:+3196863 None:intergenic
CTTACCTTGTACCATGTCAA+AGG 0.519467 1_3:+3196601 None:intergenic
TTCTTTGTCCATCAATCACA+AGG 0.521053 1_3:+3201314 None:intergenic
ATGTCCATTCCAAAATACAT+AGG 0.521663 1_3:+3199842 None:intergenic
CTACTCATATCTAGTGCCAC+TGG 0.522187 1_3:+3196459 None:intergenic
TGGATAGGTATCATATTCCT+CGG 0.523367 1_3:-3196201 Msa0097390:intron
AACTTCCAGTTATGGTATGA+AGG 0.525743 1_3:+3196668 None:intergenic
ATGAATGTAGGAACTGTGTA+TGG 0.525837 1_3:-3197150 Msa0097390:intron
TTTATAGATTTGGAAAACGA+TGG 0.528614 1_3:+3201708 None:intergenic
TTACCATGTGCTATATATGC+AGG 0.531919 1_3:+3196384 None:intergenic
TCTTGCTTGCACATGTCCCA+AGG 0.532274 1_3:+3198968 None:intergenic
AGATATGAGTAGCATGGGAA+AGG 0.533528 1_3:-3196448 Msa0097390:CDS
TTGGCAGAAATGGTCTTACA+AGG 0.535055 1_3:-3196818 Msa0097390:intron
TTTGGGTTTAAAGTTCTCGT+TGG 0.535843 1_3:+3198657 None:intergenic
GTTAGGCCCAGTAACATTGA+AGG 0.535870 1_3:-3196869 Msa0097390:CDS
GCCACTGGATCGCTGCCACT+CGG 0.538573 1_3:+3196474 None:intergenic
ACTTTAGCTCTTTAGCATTG+TGG 0.539845 1_3:+3201817 None:intergenic
AGGAACTGTGTATGGAGGAT+TGG 0.540099 1_3:-3197142 Msa0097390:CDS
TATGATGGAATCGTCGTCAC+TGG 0.542393 1_3:+3197532 None:intergenic
GTGAATGATTTAGAAGAGCA+GGG 0.543186 1_3:-3201762 Msa0097390:five_prime_UTR
TGGATAAACGACCAAAGCAT+TGG 0.545055 1_3:-3196417 Msa0097390:CDS
TCGTCGTCACTGGAGTAGGC+AGG 0.545444 1_3:+3197542 None:intergenic
AGGGGACAAGAGACTTGTCT+TGG 0.546148 1_3:-3196837 Msa0097390:CDS
ACTCTTACCATAAATTCAGC+AGG 0.547224 1_3:-3197290 Msa0097390:CDS
TCATAGACCAACTGAAGACT+TGG 0.549584 1_3:-3198479 Msa0097390:CDS
ACATTGAAGGGTCTAGATGA+GGG 0.549862 1_3:-3196856 Msa0097390:CDS
TGAGTATGGACCTGTGGAAT+GGG 0.552441 1_3:-3199062 Msa0097390:CDS
GAGTCCAAGTGGGAACGTCT+TGG 0.553534 1_3:-3196170 Msa0097390:CDS
GGTATCATATTCCTCGGTCA+TGG 0.554459 1_3:-3196195 Msa0097390:CDS
GGAATCGTCGTCACTGGAGT+AGG 0.554946 1_3:+3197538 None:intergenic
TGATCCTTGTGTCCAATCAA+TGG 0.555014 1_3:+3196642 None:intergenic
GATATGAGTAGCATGGGAAA+GGG 0.555262 1_3:-3196447 Msa0097390:CDS
GCACCAATTTCCCATTCCAC+AGG 0.555297 1_3:+3199052 None:intergenic
TTTCCAAGCCATGTGACTGT+AGG 0.556295 1_3:+3198013 None:intergenic
ACAACCTTTGACATGGTACA+AGG 0.556753 1_3:-3196605 Msa0097390:intron
TGATGGGTGAGCTGAGGTGA+AGG 0.560347 1_3:+3201665 None:intergenic
GGACTGAGAATTGGTCTGGC+TGG 0.561829 1_3:-3198630 Msa0097390:intron
TTATAGATTTGGAAAACGAT+GGG 0.562301 1_3:+3201709 None:intergenic
CCAATCAAATGTAGTATCCA+CGG 0.564185 1_3:+3197583 None:intergenic
GCACTAGATATGAGTAGCAT+GGG 0.566286 1_3:-3196453 Msa0097390:CDS
GGCACTAGATATGAGTAGCA+TGG 0.566466 1_3:-3196454 Msa0097390:CDS
GGAAATTGGTGCTCCTGGAA+AGG 0.566691 1_3:-3199041 Msa0097390:CDS
TGGGCTGCTCAAATGGCTGT+AGG 0.566955 1_3:-3199007 Msa0097390:CDS
TGCTTCTGATGGGTGAGCTG+AGG 0.568568 1_3:+3201659 None:intergenic
CATAGGTTTGAATAACATCA+AGG 0.569765 1_3:+3199859 None:intergenic
ATGAGTATGGACCTGTGGAA+TGG 0.571228 1_3:-3199063 Msa0097390:CDS
TCCTCCATTGATTGGACACA+AGG 0.572202 1_3:-3196646 Msa0097390:CDS
GTGAGGTGTGTGCTTCTGAT+GGG 0.573366 1_3:+3201649 None:intergenic
TTTCAAAAGGCTAAAGATGG+AGG 0.574864 1_3:-3199882 Msa0097390:CDS
TTCCATTCAGCACAAACGTA+GGG 0.575351 1_3:+3199629 None:intergenic
GTCAAGCTAGCACAACAAGC+TGG 0.575439 1_3:-3199677 Msa0097390:CDS
CTGTGGATCCTACAGTCACA+TGG 0.578432 1_3:-3198021 Msa0097390:CDS
GGATCCACAGAAATCAAAGC+TGG 0.580873 1_3:+3198034 None:intergenic
GCCGAGTGGCAGCGATCCAG+TGG 0.582197 1_3:-3196475 Msa0097390:CDS
GCTGAATTTATGGTAAGAGT+AGG 0.582723 1_3:+3197293 None:intergenic
TGAGCCAGCTTTGATTTCTG+TGG 0.583476 1_3:-3198038 Msa0097390:CDS
TCACCAATGAAATTCCAGTA+GGG 0.584721 1_3:+3196122 None:intergenic
AACATTGAAGGGTCTAGATG+AGG 0.588983 1_3:-3196857 Msa0097390:CDS
TTTGGCTCAAGTATGTTCCA+GGG 0.591443 1_3:-3199495 Msa0097390:CDS
TTCACCAATGAAATTCCAGT+AGG 0.593759 1_3:+3196121 None:intergenic
AAACGATGGGAAGAGAAGGG+GGG 0.595907 1_3:+3201722 None:intergenic
CAATCAAATGTAGTATCCAC+GGG 0.596448 1_3:+3197584 None:intergenic
TTGTAGATTGACACTTGCAA+TGG 0.599307 1_3:-3198703 Msa0097390:intron
GCAAATATGATCTACCACCT+TGG 0.599730 1_3:-3197792 Msa0097390:CDS
ACAACCAAGACGTTCCCACT+TGG 0.601417 1_3:+3196166 None:intergenic
GAAAGTGTTAACCTAAAGGT+CGG 0.607496 1_3:-3197096 Msa0097390:CDS
AAGGAATGCAGCACAGACAC+TGG 0.612057 1_3:+3197861 None:intergenic
AGAACTTTAAACCCAAAATG+TGG 0.614315 1_3:-3198651 Msa0097390:CDS
TGTGCTTCTTGGATAGTGGA+TGG 0.615066 1_3:+3201273 None:intergenic
TTGGTCTGCACTTTGAAACA+TGG 0.615627 1_3:-3196903 Msa0097390:CDS
GGAAGAATGCTGACAGACCA+AGG 0.618216 1_3:+3197775 None:intergenic
TTAGCTCTTTAGCATTGTGG+AGG 0.618325 1_3:+3201820 None:intergenic
CGGTCATGGTTGAGTCCAAG+TGG 0.619900 1_3:-3196181 Msa0097390:CDS
GCGATTCTTCAGATTATCTG+TGG 0.622203 1_3:-3197475 Msa0097390:CDS
GAGTATGCCAAGTCTTCAGT+TGG 0.624897 1_3:+3198472 None:intergenic
TATAGGTACACTGATTTCGG+TGG 0.628326 1_3:-3198511 Msa0097390:intron
CGAGAATGAGTATGGACCTG+TGG 0.628829 1_3:-3199068 Msa0097390:CDS
TTAGGCCCAGTAACATTGAA+GGG 0.630859 1_3:-3196868 Msa0097390:CDS
AGCATCATAATCATAGCTTG+TGG 0.636529 1_3:+3198219 None:intergenic
TGTGATGAATGTAATTACGC+TGG 0.639969 1_3:-3196360 Msa0097390:CDS
TTGGTTGTGCTTGAAGAATG+GGG 0.644178 1_3:-3196151 Msa0097390:CDS
TACCATATAGTAGTTAACAA+AGG 0.653367 1_3:+3198420 None:intergenic
TCTTTGTCCATCAATCACAA+GGG 0.658868 1_3:+3201315 None:intergenic
GCTAGATTCATACAAAATCG+TGG 0.659974 1_3:-3198445 Msa0097390:CDS
CCATAAAAGGATGACTCCCG+TGG 0.660532 1_3:-3197600 Msa0097390:CDS
TGGCCTGCATATATAGCACA+TGG 0.662930 1_3:-3196387 Msa0097390:CDS
CATTGAAGGGTCTAGATGAG+GGG 0.664668 1_3:-3196855 Msa0097390:CDS
ACAACCTTTGACGCGCCGAG+TGG 0.672410 1_3:-3196489 Msa0097390:CDS
AATGTAGGAACTGTGTATGG+AGG 0.675173 1_3:-3197147 Msa0097390:intron
ATTCCATTCAGCACAAACGT+AGG 0.678066 1_3:+3199628 None:intergenic
CTTTGAAACATGGAATGTTG+GGG 0.679854 1_3:-3196893 Msa0097390:CDS
TCCTTGTGTCCAATCAATGG+AGG 0.680608 1_3:+3196645 None:intergenic
ATTTGATTGTAGTATCATGG+AGG 0.681855 1_3:-3198280 Msa0097390:intron
CTTGGACTCAACCATGACCG+AGG 0.682721 1_3:+3196184 None:intergenic
GGTCATGGTTGAGTCCAAGT+GGG 0.689731 1_3:-3196180 Msa0097390:CDS
AAACTACGACACAAAATCTG+CGG 0.691374 1_3:-3197836 Msa0097390:CDS
GATGGGTGAGCTGAGGTGAA+GGG 0.692567 1_3:+3201666 None:intergenic
AGTTTGTTTCAAACTCAGGG+TGG 0.697300 1_3:-3199270 Msa0097390:CDS
CTATCCAAGAAGCACACCCG+AGG 0.711494 1_3:-3201266 Msa0097390:intron
GTTGTGCTTGAAGAATGGGG+AGG 0.774502 1_3:-3196148 Msa0097390:CDS
AGAATGCTGACAGACCAAGG+TGG 0.820211 1_3:+3197778 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTAAATGAACTTTTTA+AGG + chr1_3:3196695-3196714 None:intergenic 10.0%
!! ATATAATAGAAAATAAAGAA+AGG + chr1_3:3196853-3196872 None:intergenic 10.0%
!!! AACTTAACATTTTAAATAAT+TGG + chr1_3:3197238-3197257 None:intergenic 10.0%
!!! TTTTTTTCTCAAAAAAATTA+AGG + chr1_3:3197557-3197576 None:intergenic 10.0%
!!! TTTTATTATAAAGTTTTTGT+TGG - chr1_3:3198396-3198415 Msa0097390:intron 10.0%
!!! TATTTATAGCTTTAAATTAA+TGG + chr1_3:3199015-3199034 None:intergenic 10.0%
!! AAATTTAAACCATATTAATT+TGG + chr1_3:3201538-3201557 None:intergenic 10.0%
!! AATGAATAAATAAAAGAGAA+AGG + chr1_3:3196435-3196454 None:intergenic 15.0%
!!! AACAAACATATACATAATTT+TGG + chr1_3:3196481-3196500 None:intergenic 15.0%
!! TAATTCAAAAATATTATGGA+GGG + chr1_3:3196580-3196599 None:intergenic 15.0%
!! TTAATTCAAAAATATTATGG+AGG + chr1_3:3196581-3196600 None:intergenic 15.0%
!!! AACAGTCAAATTTTAAAATA+AGG - chr1_3:3196761-3196780 Msa0097390:intron 15.0%
!! AATATATAACAAAAATACAC+TGG + chr1_3:3196970-3196989 None:intergenic 15.0%
!!! TTTTTACTTATATTAGTAAC+CGG + chr1_3:3197000-3197019 None:intergenic 15.0%
!! AAAATGTTAAGTTATTTGAT+TGG - chr1_3:3197245-3197264 Msa0097390:intron 15.0%
!!! TTTTAATTAATCCAAACTTT+TGG - chr1_3:3198232-3198251 Msa0097390:CDS 15.0%
!! ATTTAATCTAATACTGAAAT+TGG - chr1_3:3198482-3198501 Msa0097390:CDS 15.0%
!! AAAGCTATAAATATTTCATT+TGG - chr1_3:3199022-3199041 Msa0097390:CDS 15.0%
!! AAGCTATAAATATTTCATTT+GGG - chr1_3:3199023-3199042 Msa0097390:CDS 15.0%
!! TTAACAAAAAAAATCAAACT+AGG + chr1_3:3199681-3199700 None:intergenic 15.0%
!!! TTTTTTGTTAATGTAATCTT+AGG - chr1_3:3199690-3199709 Msa0097390:CDS 15.0%
!! CTTAAAACACATTAAAAATT+TGG - chr1_3:3200182-3200201 Msa0097390:intron 15.0%
!! ATTAAGTTATATATGAATGT+AGG - chr1_3:3200433-3200452 Msa0097390:intron 15.0%
!!! TTTTTTTTAATCTTTTGGAT+AGG - chr1_3:3201379-3201398 Msa0097390:CDS 15.0%
!! AAGAGAAACAAATTTATTTA+TGG + chr1_3:3201770-3201789 None:intergenic 15.0%
!! TGATATTTATAAGAGTAGAA+AGG + chr1_3:3196058-3196077 None:intergenic 20.0%
!!! TGATTTTATTATTGTCTTTG+TGG - chr1_3:3196217-3196236 Msa0097390:intron 20.0%
!!! GATTTTATTATTGTCTTTGT+GGG - chr1_3:3196218-3196237 Msa0097390:intron 20.0%
!! CATTTAATAATTGATGTATG+TGG + chr1_3:3197074-3197093 None:intergenic 20.0%
!!! TAAGCAAAAATTTGTTCTTA+AGG + chr1_3:3197099-3197118 None:intergenic 20.0%
!! AAAATAAAAAATGTGCATGT+TGG + chr1_3:3197157-3197176 None:intergenic 20.0%
!! TTAAACCATATTCGTAAAAT+TGG - chr1_3:3197298-3197317 Msa0097390:CDS 20.0%
!!! TATAAAAAGATATTGACTTG+TGG + chr1_3:3197340-3197359 None:intergenic 20.0%
!! AAGATAAAACTAAAAGCAAA+AGG - chr1_3:3197407-3197426 Msa0097390:intron 20.0%
!!! TTATTCAAACCTATGTATTT+TGG - chr1_3:3197744-3197763 Msa0097390:CDS 20.0%
!! AAATAATTATTTATGTGCAG+AGG - chr1_3:3198069-3198088 Msa0097390:CDS 20.0%
!! TAAATATTTCATTTGGGAAT+TGG - chr1_3:3199029-3199048 Msa0097390:CDS 20.0%
!! AAATATTTCATTTGGGAATT+GGG - chr1_3:3199030-3199049 Msa0097390:CDS 20.0%
!!! TTTTATCTTACCTATTCTAT+AGG - chr1_3:3199067-3199086 Msa0097390:CDS 20.0%
!! TATATGGTATATGAATATGA+TGG - chr1_3:3199189-3199208 Msa0097390:intron 20.0%
!! TATATTTGATTGTAGTATCA+TGG - chr1_3:3199312-3199331 Msa0097390:CDS 20.0%
!! ATAAGGTTTAAATTGTTTCA+TGG - chr1_3:3199422-3199441 Msa0097390:intron 20.0%
!!! CTTTATGTAAATTTTTCAGA+TGG + chr1_3:3199524-3199543 None:intergenic 20.0%
!!! CTTCAATAAAGTAACAATTT+TGG + chr1_3:3199658-3199677 None:intergenic 20.0%
!!! AAATTTTACTAATTTCATGC+AGG - chr1_3:3199956-3199975 Msa0097390:intron 20.0%
!!! TTAATGTGTTTTAAGAAGTT+AGG + chr1_3:3200177-3200196 None:intergenic 20.0%
!! TTCTTTACAAAACTTTCATT+AGG + chr1_3:3200272-3200291 None:intergenic 20.0%
!!! AATGAAAGTTTTGTAAAGAA+TGG - chr1_3:3200272-3200291 Msa0097390:intron 20.0%
!! TAAATTGGAATTTATCATGA+AGG + chr1_3:3200397-3200416 None:intergenic 20.0%
!! CTTTCACTAAATGTTAATTT+AGG + chr1_3:3200484-3200503 None:intergenic 20.0%
!! ACCAAATTACCAAATTAATA+TGG - chr1_3:3201526-3201545 Msa0097390:five_prime_UTR 20.0%
!!! ACCATATTAATTTGGTAATT+TGG + chr1_3:3201530-3201549 None:intergenic 20.0%
!! CAAATTTATTTATGGCAAAA+TGG + chr1_3:3201762-3201781 None:intergenic 20.0%
!!! AAATTTGTTTCTCTTTACAT+TGG - chr1_3:3201775-3201794 Msa0097390:five_prime_UTR 20.0%
! TTATAGATTTGGAAAACGAT+GGG + chr1_3:3195889-3195908 None:intergenic 25.0%
! TTTATAGATTTGGAAAACGA+TGG + chr1_3:3195890-3195909 None:intergenic 25.0%
!!! GAAAGTGCTTTTTATAGATT+TGG + chr1_3:3195900-3195919 None:intergenic 25.0%
!!! AGATAGAATGTTTTGTTACA+AGG + chr1_3:3195971-3195990 None:intergenic 25.0%
!!! CAAAGAAGAATTTTGATATC+TGG - chr1_3:3196297-3196316 Msa0097390:intron 25.0%
! TTCATTGCATAATATATGCA+GGG + chr1_3:3196828-3196847 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr1_3:3197035-3197054 Msa0097390:intron 25.0%
! TTGCTTATATTAATGATCAG+AGG - chr1_3:3197112-3197131 Msa0097390:CDS 25.0%
! TGCTTATATTAATGATCAGA+GGG - chr1_3:3197113-3197132 Msa0097390:CDS 25.0%
! GTTAAGTTATTTGATTGGTA+AGG - chr1_3:3197250-3197269 Msa0097390:intron 25.0%
! GTAGTATAGATACTTATTTG+TGG - chr1_3:3197461-3197480 Msa0097390:intron 25.0%
! AATCTATGTTGTATAGATAC+AGG + chr1_3:3197595-3197614 None:intergenic 25.0%
!! ATTTTTCTTATGCAATGTCT+TGG - chr1_3:3197612-3197631 Msa0097390:CDS 25.0%
! TTATTTCAAAAGGCTAAAGA+TGG - chr1_3:3197710-3197729 Msa0097390:intron 25.0%
!! TTTCATCATGTTCACAATTT+TGG + chr1_3:3198299-3198318 None:intergenic 25.0%
! TTTACCTGAGACATAATTAT+TGG + chr1_3:3198352-3198371 None:intergenic 25.0%
! TACCATATAGTAGTTAACAA+AGG + chr1_3:3199178-3199197 None:intergenic 25.0%
! TTAACGCCTTTCAAAATATT+AGG - chr1_3:3199474-3199493 Msa0097390:CDS 25.0%
! ACTTCAAAAAACTTCTAACA+TGG + chr1_3:3199923-3199942 None:intergenic 25.0%
! ACTAATGTTTACACTGAAAA+TGG + chr1_3:3200249-3200268 None:intergenic 25.0%
!!! GTTCTACATGTTTTTGTTAA+TGG - chr1_3:3200332-3200351 Msa0097390:intron 25.0%
!! AAGGAATTTCTAAGAAGAAA+AGG + chr1_3:3200378-3200397 None:intergenic 25.0%
! TCAAATTAATACCAGAATGT+TGG - chr1_3:3200673-3200692 Msa0097390:intron 25.0%
!! TGAGACAAATTTTATGTTGT+TGG - chr1_3:3200874-3200893 Msa0097390:intron 25.0%
!! CAAATTTTATGTTGTTGGAT+AGG - chr1_3:3200879-3200898 Msa0097390:intron 25.0%
! TTAAAAAACAACCTTTGACA+TGG - chr1_3:3200983-3201002 Msa0097390:intron 25.0%
! AGATTTATTGAAAATGCAGA+TGG + chr1_3:3201066-3201085 None:intergenic 25.0%
!! TTTACAAAGCCAAACTATTT+TGG - chr1_3:3201679-3201698 Msa0097390:five_prime_UTR 25.0%
! CAATATTCACCAAAATAGTT+TGG + chr1_3:3201691-3201710 None:intergenic 25.0%
AAGAGCTAAAGTTTCCTTAA+CGG - chr1_3:3195789-3195808 Msa0097390:three_prime_UTR 30.0%
AATAAGGGACTTAGAGAAAA+CGG + chr1_3:3196033-3196052 None:intergenic 30.0%
AAGAGTAGAAAGGTGAATAA+GGG + chr1_3:3196048-3196067 None:intergenic 30.0%
TAAGAGTAGAAAGGTGAATA+AGG + chr1_3:3196049-3196068 None:intergenic 30.0%
! TATTTTTCTCAACCCAACAA+TGG + chr1_3:3196117-3196136 None:intergenic 30.0%
!! CTATTCAAGAGTTTTGATGA+TGG - chr1_3:3196155-3196174 Msa0097390:CDS 30.0%
AACTAATGTTGTACACATGT+TGG + chr1_3:3196381-3196400 None:intergenic 30.0%
GAGAAAGGAAAGCAATAATT+TGG + chr1_3:3196420-3196439 None:intergenic 30.0%
!!! ACATAATTTTGGTTCATGCA+TGG + chr1_3:3196470-3196489 None:intergenic 30.0%
!! TGTTTGTTGTTACTTAATCG+TGG - chr1_3:3196493-3196512 Msa0097390:intron 30.0%
TCATTGCATAATATATGCAG+GGG + chr1_3:3196827-3196846 None:intergenic 30.0%
GTTCATTGCATAATATATGC+AGG + chr1_3:3196829-3196848 None:intergenic 30.0%
AAGTTGGAATGTAGTAAACT+AGG - chr1_3:3196934-3196953 Msa0097390:intron 30.0%
TTGTTATATATTACACCCTC+CGG - chr1_3:3196978-3196997 Msa0097390:intron 30.0%
TACTTATATTAGTAACCGGA+GGG + chr1_3:3196996-3197015 None:intergenic 30.0%
TTACTTATATTAGTAACCGG+AGG + chr1_3:3196997-3197016 None:intergenic 30.0%
AGTTATTTGATTGGTAAGGA+AGG - chr1_3:3197254-3197273 Msa0097390:CDS 30.0%
ATTGGTAAGGAAGGATAATA+TGG - chr1_3:3197263-3197282 Msa0097390:CDS 30.0%
ACCATATTCGTAAAATTGGA+AGG - chr1_3:3197302-3197321 Msa0097390:CDS 30.0%
! TCCTTCCAATTTTACGAATA+TGG + chr1_3:3197306-3197325 None:intergenic 30.0%
TGTTGTATAGATACAGGTAT+GGG + chr1_3:3197589-3197608 None:intergenic 30.0%
ATGTTGTATAGATACAGGTA+TGG + chr1_3:3197590-3197609 None:intergenic 30.0%
TATGTTTCTTAATGCAGATG+TGG - chr1_3:3197681-3197700 Msa0097390:intron 30.0%
!!! TTAGCCTTTTGAAATAAGTC+TGG + chr1_3:3197707-3197726 None:intergenic 30.0%
CATAGGTTTGAATAACATCA+AGG + chr1_3:3197739-3197758 None:intergenic 30.0%
!! CAAACCTATGTATTTTGGAA+TGG - chr1_3:3197749-3197768 Msa0097390:CDS 30.0%
ATGTCCATTCCAAAATACAT+AGG + chr1_3:3197756-3197775 None:intergenic 30.0%
AATATCTTCGTTACATTTCC+AGG + chr1_3:3197788-3197807 None:intergenic 30.0%
TTTGTGCTGAATGGAATTAT+GGG - chr1_3:3197973-3197992 Msa0097390:intron 30.0%
ATTGAAACTCCAACCTTAAA+TGG + chr1_3:3198150-3198169 None:intergenic 30.0%
TATACATCATGCCAAAAGTT+TGG + chr1_3:3198246-3198265 None:intergenic 30.0%
TGGCATGATGTATATATGTT+AGG - chr1_3:3198252-3198271 Msa0097390:CDS 30.0%
GGTACAAATTTGAAGGATAA+AGG - chr1_3:3198800-3198819 Msa0097390:intron 30.0%
TGTCAATCTACAACATAGTT+CGG + chr1_3:3198885-3198904 None:intergenic 30.0%
AGAACTTTAAACCCAAAATG+TGG - chr1_3:3198944-3198963 Msa0097390:intron 30.0%
AATCAGTGTACCTATAGAAT+AGG + chr1_3:3199080-3199099 None:intergenic 30.0%
!! TTCTATAGGTACACTGATTT+CGG - chr1_3:3199081-3199100 Msa0097390:intron 30.0%
CTCCTTTGTTAACTACTATA+TGG - chr1_3:3199173-3199192 Msa0097390:intron 30.0%
ATTTGATTGTAGTATCATGG+AGG - chr1_3:3199315-3199334 Msa0097390:CDS 30.0%
! TATCATGGAGGAACTAATTT+TGG - chr1_3:3199327-3199346 Msa0097390:intron 30.0%
TGCATACCATATTCATCAAT+AGG + chr1_3:3199402-3199421 None:intergenic 30.0%
GATGAATATGGTATGCAATA+AGG - chr1_3:3199405-3199424 Msa0097390:intron 30.0%
!! GGAAGTCCTAATATTTTGAA+AGG + chr1_3:3199483-3199502 None:intergenic 30.0%
CTCAGTTCATGATAAGATTA+TGG - chr1_3:3199631-3199650 Msa0097390:CDS 30.0%
! AAAACTACAGTTTTGCAATC+AGG + chr1_3:3199844-3199863 None:intergenic 30.0%
! CAAAACTGTAGTTTTCAACA+CGG - chr1_3:3199849-3199868 Msa0097390:CDS 30.0%
ACTAATTTCATGCAGGTTAA+TGG - chr1_3:3199963-3199982 Msa0097390:intron 30.0%
TTTGTTAATGGTCAACTTTC+AGG - chr1_3:3200344-3200363 Msa0097390:intron 30.0%
!! TAGTGAAAGTGTTAACCTAA+AGG - chr1_3:3200495-3200514 Msa0097390:intron 30.0%
TCGAACAAGATAATACTAAC+CGG + chr1_3:3200565-3200584 None:intergenic 30.0%
!! ACTTTGAAACATGGAATGTT+GGG - chr1_3:3200701-3200720 Msa0097390:intron 30.0%
! TTTTATGTTGTTGGATAGGT+TGG - chr1_3:3200883-3200902 Msa0097390:intron 30.0%
! CTTTTACTAATCCAAAATGC+AGG - chr1_3:3201260-3201279 Msa0097390:intron 30.0%
AAATCTTACCATTTCTGTGT+TGG + chr1_3:3201301-3201320 None:intergenic 30.0%
TGGTAAGATTTCATATAACG+AGG - chr1_3:3201310-3201329 Msa0097390:CDS 30.0%
TCAAGTTTACACCAAAAGAT+TGG - chr1_3:3201624-3201643 Msa0097390:five_prime_UTR 30.0%
GTTACAAGCTCTATAATTCA+TGG + chr1_3:3201716-3201735 None:intergenic 30.0%
!! ACTTTAGCTCTTTAGCATTG+TGG + chr1_3:3195781-3195800 None:intergenic 35.0%
AGAGCTAAAGTTTCCTTAAC+GGG - chr1_3:3195790-3195809 Msa0097390:three_prime_UTR 35.0%
TGTGAATGATTTAGAAGAGC+AGG - chr1_3:3195832-3195851 Msa0097390:three_prime_UTR 35.0%
GTGAATGATTTAGAAGAGCA+GGG - chr1_3:3195833-3195852 Msa0097390:three_prime_UTR 35.0%
!! GAATGTTTTGTTACAAGGTG+AGG + chr1_3:3195966-3195985 None:intergenic 35.0%
AACAAAAGACACACCATTGT+TGG - chr1_3:3196101-3196120 Msa0097390:exon 35.0%
ACAAAAGACACACCATTGTT+GGG - chr1_3:3196102-3196121 Msa0097390:exon 35.0%
CAAAAAGAGTTTCACATGCT+GGG - chr1_3:3196192-3196211 Msa0097390:CDS 35.0%
AAAAAGAGTTTCACATGCTG+GGG - chr1_3:3196193-3196212 Msa0097390:CDS 35.0%
TTATTGTCTTTGTGGGTTTG+TGG - chr1_3:3196225-3196244 Msa0097390:intron 35.0%
TCTTTGTCCATCAATCACAA+GGG + chr1_3:3196283-3196302 None:intergenic 35.0%
TTCTTTGTCCATCAATCACA+AGG + chr1_3:3196284-3196303 None:intergenic 35.0%
AATGTTGTACACATGTTGGA+TGG + chr1_3:3196377-3196396 None:intergenic 35.0%
CCACAAAATGGTGAAAAAAG+GGG + chr1_3:3196520-3196539 None:intergenic 35.0%
CCCACAAAATGGTGAAAAAA+GGG + chr1_3:3196521-3196540 None:intergenic 35.0%
!!! CCCTTTTTTCACCATTTTGT+GGG - chr1_3:3196518-3196537 Msa0097390:intron 35.0%
ACCCACAAAATGGTGAAAAA+AGG + chr1_3:3196522-3196541 None:intergenic 35.0%
! TTTTCACCATTTTGTGGGTT+TGG - chr1_3:3196523-3196542 Msa0097390:intron 35.0%
! TACTGACTAAATGAGATGTC+TGG - chr1_3:3196788-3196807 Msa0097390:intron 35.0%
ACTGACTAAATGAGATGTCT+GGG - chr1_3:3196789-3196808 Msa0097390:intron 35.0%
! CTTGCGTACATAAGTTTTCT+CGG - chr1_3:3197643-3197662 Msa0097390:intron 35.0%
TTTCAAAAGGCTAAAGATGG+AGG - chr1_3:3197713-3197732 Msa0097390:intron 35.0%
CTTTATGTTCACTTGCGTAT+TGG - chr1_3:3197942-3197961 Msa0097390:intron 35.0%
GTTTGTGCTGAATGGAATTA+TGG - chr1_3:3197972-3197991 Msa0097390:intron 35.0%
AACAGACAATGAGCCATTTA+AGG - chr1_3:3198134-3198153 Msa0097390:intron 35.0%
! AGAGAGTTTGTTTCAAACTC+AGG - chr1_3:3198321-3198340 Msa0097390:intron 35.0%
! GAGAGTTTGTTTCAAACTCA+GGG - chr1_3:3198322-3198341 Msa0097390:intron 35.0%
TGGTCCAATAATTATGTCTC+AGG - chr1_3:3198345-3198364 Msa0097390:intron 35.0%
GCAACGCTTCTTATTGTAAT+TGG + chr1_3:3198424-3198443 None:intergenic 35.0%
TGATAGATCGAGAATGAGTA+TGG - chr1_3:3198519-3198538 Msa0097390:intron 35.0%
TGGAAAGGCTTACACAAAAT+GGG - chr1_3:3198569-3198588 Msa0097390:intron 35.0%
TGCTAAGGTAAACTTACAAC+GGG + chr1_3:3198666-3198685 None:intergenic 35.0%
CTGCTAAGGTAAACTTACAA+CGG + chr1_3:3198667-3198686 None:intergenic 35.0%
TGTGTTTAGTGTTAGAGAAG+AGG - chr1_3:3198779-3198798 Msa0097390:intron 35.0%
! GAGAAGAGGTACAAATTTGA+AGG - chr1_3:3198793-3198812 Msa0097390:intron 35.0%
TTGTAGATTGACACTTGCAA+TGG - chr1_3:3198892-3198911 Msa0097390:intron 35.0%
! TTGGGTTTAAAGTTCTCGTT+GGG + chr1_3:3198940-3198959 None:intergenic 35.0%
! TTTGGGTTTAAAGTTCTCGT+TGG + chr1_3:3198941-3198960 None:intergenic 35.0%
! CAATTCTCAGTCCACATTTT+GGG + chr1_3:3198958-3198977 None:intergenic 35.0%
GCTAGATTCATACAAAATCG+TGG - chr1_3:3199150-3199169 Msa0097390:intron 35.0%
!! GAACTTAGAAGTATTCACAC+AGG + chr1_3:3199235-3199254 None:intergenic 35.0%
!! AATTTTGGTCGAACATCTAG+TGG - chr1_3:3199342-3199361 Msa0097390:intron 35.0%
! CATAGCTTGTGGCAATAAAA+AGG + chr1_3:3199368-3199387 None:intergenic 35.0%
AGCATCATAATCATAGCTTG+TGG + chr1_3:3199379-3199398 None:intergenic 35.0%
GATGCTCCTATTGATGAATA+TGG - chr1_3:3199393-3199412 Msa0097390:intron 35.0%
GACTTCCAAATGAACCAAAA+TGG - chr1_3:3199496-3199515 Msa0097390:CDS 35.0%
!! TTTTTCAGATGGCTCCATTT+TGG + chr1_3:3199513-3199532 None:intergenic 35.0%
GCTTGGAAATAAAAACCTTG+AGG - chr1_3:3199596-3199615 Msa0097390:intron 35.0%
!! ATTTTGTGTCGTAGTTTGCA+AGG + chr1_3:3199756-3199775 None:intergenic 35.0%
AAACTACGACACAAAATCTG+CGG - chr1_3:3199759-3199778 Msa0097390:intron 35.0%
ATGGACATAGCTTCCATAAA+AGG - chr1_3:3199982-3200001 Msa0097390:intron 35.0%
CAATCAAATGTAGTATCCAC+GGG + chr1_3:3200014-3200033 None:intergenic 35.0%
CCAATCAAATGTAGTATCCA+CGG + chr1_3:3200015-3200034 None:intergenic 35.0%
CATCATAGCAAATGCACTTT+GGG - chr1_3:3200079-3200098 Msa0097390:intron 35.0%
GCTGAATTTATGGTAAGAGT+AGG + chr1_3:3200305-3200324 None:intergenic 35.0%
ACTCTTACCATAAATTCAGC+AGG - chr1_3:3200305-3200324 Msa0097390:intron 35.0%
AACATGACCTGCTGAATTTA+TGG + chr1_3:3200315-3200334 None:intergenic 35.0%
ATGAATGTAGGAACTGTGTA+TGG - chr1_3:3200445-3200464 Msa0097390:intron 35.0%
!! GAAAGTGTTAACCTAAAGGT+CGG - chr1_3:3200499-3200518 Msa0097390:intron 35.0%
! TTCTTTACTTAGTGTTGCTG+TGG - chr1_3:3200534-3200553 Msa0097390:intron 35.0%
! TCTTTACTTAGTGTTGCTGT+GGG - chr1_3:3200535-3200554 Msa0097390:intron 35.0%
!! CACTTTGAAACATGGAATGT+TGG - chr1_3:3200700-3200719 Msa0097390:intron 35.0%
!! CTTTGAAACATGGAATGTTG+GGG - chr1_3:3200702-3200721 Msa0097390:intron 35.0%
AACTTCCAGTTATGGTATGA+AGG + chr1_3:3200930-3200949 None:intergenic 35.0%
GTCATATGTAACATTGGCAA+AGG + chr1_3:3201044-3201063 None:intergenic 35.0%
CAGATGGTCATATGTAACAT+TGG + chr1_3:3201050-3201069 None:intergenic 35.0%
TTACCATGTGCTATATATGC+AGG + chr1_3:3201214-3201233 None:intergenic 35.0%
TGTGATGAATGTAATTACGC+TGG - chr1_3:3201235-3201254 Msa0097390:intron 35.0%
TGGATAGGTATCATATTCCT+CGG - chr1_3:3201394-3201413 Msa0097390:CDS 35.0%
TCACCAATGAAATTCCAGTA+GGG + chr1_3:3201476-3201495 None:intergenic 35.0%
TTCACCAATGAAATTCCAGT+AGG + chr1_3:3201477-3201496 None:intergenic 35.0%
CTTGAACTACCAGAAAAAGA+TGG + chr1_3:3201609-3201628 None:intergenic 35.0%
! CATTTCTGCATCCAATCTTT+TGG + chr1_3:3201638-3201657 None:intergenic 35.0%
CATGTAAAGTTGCTTGCAAA+TGG - chr1_3:3201801-3201820 Msa0097390:five_prime_UTR 35.0%
! TTAGCTCTTTAGCATTGTGG+AGG + chr1_3:3195778-3195797 None:intergenic 40.0%
!!! CGGCTTCTAGTTTTTGTTTG+AGG + chr1_3:3196013-3196032 None:intergenic 40.0%
GCAAAAAGAGTTTCACATGC+TGG - chr1_3:3196191-3196210 Msa0097390:CDS 40.0%
!!! CCCCTTTTTTCACCATTTTG+TGG - chr1_3:3196517-3196536 Msa0097390:intron 40.0%
CTGACTAAATGAGATGTCTG+GGG - chr1_3:3196790-3196809 Msa0097390:intron 40.0%
TGCATAATATATGCAGGGGT+CGG + chr1_3:3196823-3196842 None:intergenic 40.0%
! TCAGAGGGTGTAATTACCAA+CGG - chr1_3:3197128-3197147 Msa0097390:CDS 40.0%
GTGGCCAGACTTATTTCAAA+AGG - chr1_3:3197700-3197719 Msa0097390:intron 40.0%
TTCGTTACATTTCCAGGAGA+AGG + chr1_3:3197782-3197801 None:intergenic 40.0%
TTCCATTCAGCACAAACGTA+GGG + chr1_3:3197969-3197988 None:intergenic 40.0%
ATTCCATTCAGCACAAACGT+AGG + chr1_3:3197970-3197989 None:intergenic 40.0%
! TTTGGCTCAAGTATGTTCCA+GGG - chr1_3:3198100-3198119 Msa0097390:CDS 40.0%
! GACAATGAGCCATTTAAGGT+TGG - chr1_3:3198138-3198157 Msa0097390:intron 40.0%
! AGTTTGTTTCAAACTCAGGG+TGG - chr1_3:3198325-3198344 Msa0097390:intron 40.0%
! CATTTTGTGTAAGCCTTTCC+AGG + chr1_3:3198570-3198589 None:intergenic 40.0%
CTGGAAAGGCTTACACAAAA+TGG - chr1_3:3198568-3198587 Msa0097390:intron 40.0%
TCTAGATACTGGTGTACCTT+GGG - chr1_3:3198611-3198630 Msa0097390:intron 40.0%
TGTGTCGTGTCAATCATATC+AGG - chr1_3:3198705-3198724 Msa0097390:intron 40.0%
! CCAATTCTCAGTCCACATTT+TGG + chr1_3:3198959-3198978 None:intergenic 40.0%
! CCAAAATGTGGACTGAGAAT+TGG - chr1_3:3198956-3198975 Msa0097390:CDS 40.0%
!! TATAGGTACACTGATTTCGG+TGG - chr1_3:3199084-3199103 Msa0097390:intron 40.0%
TCATAGACCAACTGAAGACT+TGG - chr1_3:3199116-3199135 Msa0097390:intron 40.0%
!!! TGGCTCCATTTTGGTTCATT+TGG + chr1_3:3199504-3199523 None:intergenic 40.0%
GAGTCATAGACTTTACCTCA+AGG + chr1_3:3199614-3199633 None:intergenic 40.0%
GCAACGGTTACATTTGGAAA+TGG - chr1_3:3199781-3199800 Msa0097390:intron 40.0%
GCAAATATGATCTACCACCT+TGG - chr1_3:3199803-3199822 Msa0097390:intron 40.0%
! TGTAGTTTTCAACACGGCAA+CGG - chr1_3:3199855-3199874 Msa0097390:CDS 40.0%
CCGTGGATACTACATTTGAT+TGG - chr1_3:3200012-3200031 Msa0097390:intron 40.0%
!! CCAAAGTGCATTTGCTATGA+TGG + chr1_3:3200081-3200100 None:intergenic 40.0%
CCATCATAGCAAATGCACTT+TGG - chr1_3:3200078-3200097 Msa0097390:intron 40.0%
GCGATTCTTCAGATTATCTG+TGG - chr1_3:3200120-3200139 Msa0097390:intron 40.0%
AATGTAGGAACTGTGTATGG+AGG - chr1_3:3200448-3200467 Msa0097390:intron 40.0%
!! TCTTGTTATTGCCGACCTTT+AGG + chr1_3:3200513-3200532 None:intergenic 40.0%
!! TTGGTCTGCACTTTGAAACA+TGG - chr1_3:3200692-3200711 Msa0097390:intron 40.0%
TTAGGCCCAGTAACATTGAA+GGG - chr1_3:3200727-3200746 Msa0097390:intron 40.0%
CTAGACCCTTCAATGTTACT+GGG + chr1_3:3200735-3200754 None:intergenic 40.0%
TCTAGACCCTTCAATGTTAC+TGG + chr1_3:3200736-3200755 None:intergenic 40.0%
AACATTGAAGGGTCTAGATG+AGG - chr1_3:3200738-3200757 Msa0097390:intron 40.0%
ACATTGAAGGGTCTAGATGA+GGG - chr1_3:3200739-3200758 Msa0097390:intron 40.0%
! TTGGCAGAAATGGTCTTACA+AGG - chr1_3:3200777-3200796 Msa0097390:intron 40.0%
! TGTTGGATAGGTTGGACTAA+AGG - chr1_3:3200891-3200910 Msa0097390:intron 40.0%
! GTTGGATAGGTTGGACTAAA+GGG - chr1_3:3200892-3200911 Msa0097390:intron 40.0%
TTGAGCCTTCATACCATAAC+TGG - chr1_3:3200922-3200941 Msa0097390:intron 40.0%
AATGGAGGAACTTCCAGTTA+TGG + chr1_3:3200938-3200957 None:intergenic 40.0%
TGATCCTTGTGTCCAATCAA+TGG + chr1_3:3200956-3200975 None:intergenic 40.0%
TTGGACACAAGGATCATCAT+TGG - chr1_3:3200960-3200979 Msa0097390:intron 40.0%
ACAACCTTTGACATGGTACA+AGG - chr1_3:3200990-3201009 Msa0097390:intron 40.0%
CTTACCTTGTACCATGTCAA+AGG + chr1_3:3200997-3201016 None:intergenic 40.0%
GCACTAGATATGAGTAGCAT+GGG - chr1_3:3201142-3201161 Msa0097390:intron 40.0%
AGATATGAGTAGCATGGGAA+AGG - chr1_3:3201147-3201166 Msa0097390:intron 40.0%
GATATGAGTAGCATGGGAAA+GGG - chr1_3:3201148-3201167 Msa0097390:intron 40.0%
TGGATAAACGACCAAAGCAT+TGG - chr1_3:3201178-3201197 Msa0097390:intron 40.0%
! CCACAATTTGTCCTGCATTT+TGG + chr1_3:3201274-3201293 None:intergenic 40.0%
CCAAAATGCAGGACAAATTG+TGG - chr1_3:3201271-3201290 Msa0097390:CDS 40.0%
TCTTGGTTGTGCTTGAAGAA+TGG - chr1_3:3201442-3201461 Msa0097390:exon 40.0%
CTTGGTTGTGCTTGAAGAAT+GGG - chr1_3:3201443-3201462 Msa0097390:exon 40.0%
TTGGTTGTGCTTGAAGAATG+GGG - chr1_3:3201444-3201463 Msa0097390:exon 40.0%
TGACCCTACTGGAATTTCAT+TGG - chr1_3:3201470-3201489 Msa0097390:five_prime_UTR 40.0%
! ATCGATGCTCCATCTTTTTC+TGG - chr1_3:3201597-3201616 Msa0097390:five_prime_UTR 40.0%
! TTCACAAGCATTGCCCGTTA+AGG + chr1_3:3195806-3195825 None:intergenic 45.0%
AAAACGATGGGAAGAGAAGG+GGG + chr1_3:3195877-3195896 None:intergenic 45.0%
GAAAACGATGGGAAGAGAAG+GGG + chr1_3:3195878-3195897 None:intergenic 45.0%
GGAAAACGATGGGAAGAGAA+GGG + chr1_3:3195879-3195898 None:intergenic 45.0%
TGGAAAACGATGGGAAGAGA+AGG + chr1_3:3195880-3195899 None:intergenic 45.0%
CACAAAGCCCTTGTGATTGA+TGG - chr1_3:3196273-3196292 Msa0097390:intron 45.0%
!! TGTGCTTCTTGGATAGTGGA+TGG + chr1_3:3196325-3196344 None:intergenic 45.0%
TACACATGTTGGATGGAGGT+TGG + chr1_3:3196370-3196389 None:intergenic 45.0%
GTTGTACACATGTTGGATGG+AGG + chr1_3:3196374-3196393 None:intergenic 45.0%
GGATGACCAAACCCACAAAA+TGG + chr1_3:3196532-3196551 None:intergenic 45.0%
GCATAATATATGCAGGGGTC+GGG + chr1_3:3196822-3196841 None:intergenic 45.0%
! CAGAGGGTGTAATTACCAAC+GGG - chr1_3:3197129-3197148 Msa0097390:CDS 45.0%
TGTGCAGAGGATTTCCTGTT+TGG - chr1_3:3198082-3198101 Msa0097390:CDS 45.0%
GGAACATACTTGAGCCAAAC+AGG + chr1_3:3198099-3198118 None:intergenic 45.0%
! GTTTGGCTCAAGTATGTTCC+AGG - chr1_3:3198099-3198118 Msa0097390:CDS 45.0%
ATGAGTATGGACCTGTGGAA+TGG - chr1_3:3198532-3198551 Msa0097390:intron 45.0%
TGAGTATGGACCTGTGGAAT+GGG - chr1_3:3198533-3198552 Msa0097390:intron 45.0%
!! CACAAAATGGGCTGCTCAAA+TGG - chr1_3:3198581-3198600 Msa0097390:intron 45.0%
ATGGCTGTAGGTCTAGATAC+TGG - chr1_3:3198600-3198619 Msa0097390:intron 45.0%
GTCTAGATACTGGTGTACCT+TGG - chr1_3:3198610-3198629 Msa0097390:intron 45.0%
GGTAAACTTACAACGGGATC+AGG + chr1_3:3198660-3198679 None:intergenic 45.0%
! ATGTGGACTGAGAATTGGTC+TGG - chr1_3:3198961-3198980 Msa0097390:CDS 45.0%
GAGTATGCCAAGTCTTCAGT+TGG + chr1_3:3199126-3199145 None:intergenic 45.0%
! TGAGCCAGCTTTGATTTCTG+TGG - chr1_3:3199557-3199576 Msa0097390:intron 45.0%
GGATCCACAGAAATCAAAGC+TGG + chr1_3:3199564-3199583 None:intergenic 45.0%
TTTCCAAGCCATGTGACTGT+AGG + chr1_3:3199585-3199604 None:intergenic 45.0%
! TATGATGGAATCGTCGTCAC+TGG + chr1_3:3200066-3200085 None:intergenic 45.0%
AGGAACTGTGTATGGAGGAT+TGG - chr1_3:3200453-3200472 Msa0097390:intron 45.0%
! TTGCTCTGGTCGCACATTTT+AGG - chr1_3:3200601-3200620 Msa0097390:intron 45.0%
CAAAGTGCAGACCAACATTC+TGG + chr1_3:3200687-3200706 None:intergenic 45.0%
! ACATGGAATGTTGGGGTGTT+AGG - chr1_3:3200709-3200728 Msa0097390:intron 45.0%
GTTAGGCCCAGTAACATTGA+AGG - chr1_3:3200726-3200745 Msa0097390:intron 45.0%
CATTGAAGGGTCTAGATGAG+GGG - chr1_3:3200740-3200759 Msa0097390:intron 45.0%
GAGACTTGTCTTGGCAGAAA+TGG - chr1_3:3200767-3200786 Msa0097390:intron 45.0%
CTGGAAGTTCCTCCATTGAT+TGG - chr1_3:3200941-3200960 Msa0097390:intron 45.0%
! TCCTCCATTGATTGGACACA+AGG - chr1_3:3200949-3200968 Msa0097390:intron 45.0%
TCCTTGTGTCCAATCAATGG+AGG + chr1_3:3200953-3200972 None:intergenic 45.0%
CTACTCATATCTAGTGCCAC+TGG + chr1_3:3201139-3201158 None:intergenic 45.0%
GGCACTAGATATGAGTAGCA+TGG - chr1_3:3201141-3201160 Msa0097390:intron 45.0%
GCATGGGAAAGGGTGAAATA+TGG - chr1_3:3201158-3201177 Msa0097390:intron 45.0%
!! ACCAAAGCATTGGTCGTCAT+TGG - chr1_3:3201188-3201207 Msa0097390:intron 45.0%
TGGCCTGCATATATAGCACA+TGG - chr1_3:3201208-3201227 Msa0097390:intron 45.0%
GTGGAGAACCAACACAGAAA+TGG - chr1_3:3201290-3201309 Msa0097390:CDS 45.0%
GGTATCATATTCCTCGGTCA+TGG - chr1_3:3201400-3201419 Msa0097390:CDS 45.0%
!!! AAAATTTTAGATTTTAAAAT+AGG + chr1_3:3196553-3196572 None:intergenic 5.0%
!!! ATTTTAAAATCTAAAATTTT+TGG - chr1_3:3196553-3196572 Msa0097390:intron 5.0%
!!! TTTTTAATTCAAAAATATTA+TGG + chr1_3:3196584-3196603 None:intergenic 5.0%
!!! ATTTTAGATAAAATATTTTA+TGG - chr1_3:3196729-3196748 Msa0097390:intron 5.0%
!!! TTTTTTTTTTTATTATAAGT+TGG - chr1_3:3196918-3196937 Msa0097390:intron 5.0%
!!! CTTATTTTTTTTTTTTTTTA+GGG + chr1_3:3198450-3198469 None:intergenic 5.0%
!!! TCTTATTTTTTTTTTTTTTT+AGG + chr1_3:3198451-3198470 None:intergenic 5.0%
!!! TTAATTTAGAATATATAAAT+TGG + chr1_3:3200412-3200431 None:intergenic 5.0%
!!! TAATTTTTTTTTTAATCTTT+TGG - chr1_3:3201374-3201393 Msa0097390:CDS 5.0%
AAACGATGGGAAGAGAAGGG+GGG + chr1_3:3195876-3195895 None:intergenic 50.0%
GTGAGGTGTGTGCTTCTGAT+GGG + chr1_3:3195949-3195968 None:intergenic 50.0%
GAGTGGAATGAGTGTACCTC+GGG + chr1_3:3196348-3196367 None:intergenic 50.0%
GGAGTGGAATGAGTGTACCT+CGG + chr1_3:3196349-3196368 None:intergenic 50.0%
ATGTTGGATGGAGGTTGGAG+TGG + chr1_3:3196365-3196384 None:intergenic 50.0%
!! ATGTGCATGTTGGTTCCCGT+TGG + chr1_3:3197147-3197166 None:intergenic 50.0%
AATGGACATGAGCCTTCTCC+TGG - chr1_3:3197767-3197786 Msa0097390:CDS 50.0%
GTCAAGCTAGCACAACAAGC+TGG - chr1_3:3197918-3197937 Msa0097390:intron 50.0%
GTCCCTACGTTTGTGCTGAA+TGG - chr1_3:3197964-3197983 Msa0097390:intron 50.0%
GCTCAAGTATGTTCCAGGGA+TGG - chr1_3:3198104-3198123 Msa0097390:intron 50.0%
!! TCTGTTCTGAAAGCCATCCC+TGG + chr1_3:3198120-3198139 None:intergenic 50.0%
CGAGAATGAGTATGGACCTG+TGG - chr1_3:3198527-3198546 Msa0097390:intron 50.0%
GGACCTGTGGAATGGGAAAT+TGG - chr1_3:3198540-3198559 Msa0097390:intron 50.0%
GCACCAATTTCCCATTCCAC+AGG + chr1_3:3198546-3198565 None:intergenic 50.0%
! GAATGGGAAATTGGTGCTCC+TGG - chr1_3:3198549-3198568 Msa0097390:intron 50.0%
! GGAAATTGGTGCTCCTGGAA+AGG - chr1_3:3198554-3198573 Msa0097390:intron 50.0%
TCTTGCTTGCACATGTCCCA+AGG + chr1_3:3198630-3198649 None:intergenic 50.0%
CGAACACGCTGATACTGCTA+AGG + chr1_3:3198681-3198700 None:intergenic 50.0%
CTGTGGATCCTACAGTCACA+TGG - chr1_3:3199574-3199593 Msa0097390:intron 50.0%
GATCCTACAGTCACATGGCT+TGG - chr1_3:3199579-3199598 Msa0097390:intron 50.0%
AAGGAATGCAGCACAGACAC+TGG + chr1_3:3199737-3199756 None:intergenic 50.0%
CGACACAAAATCTGCGGCAA+CGG - chr1_3:3199765-3199784 Msa0097390:intron 50.0%
TCTGCGGCAACGGTTACATT+TGG - chr1_3:3199775-3199794 Msa0097390:intron 50.0%
AGAATGCTGACAGACCAAGG+TGG + chr1_3:3199820-3199839 None:intergenic 50.0%
GGAAGAATGCTGACAGACCA+AGG + chr1_3:3199823-3199842 None:intergenic 50.0%
! CCACGGGAGTCATCCTTTTA+TGG + chr1_3:3199998-3200017 None:intergenic 50.0%
CCATAAAAGGATGACTCCCG+TGG - chr1_3:3199995-3200014 Msa0097390:intron 50.0%
! TAGTGTTGCTGTGGGTCTTC+CGG - chr1_3:3200543-3200562 Msa0097390:intron 50.0%
! TGTTCGATGCACACCCCTTT+TGG - chr1_3:3200578-3200597 Msa0097390:intron 50.0%
TGCGACCAGAGCAACCAAAA+GGG + chr1_3:3200595-3200614 None:intergenic 50.0%
GCCAATGACGACCAATGCTT+TGG + chr1_3:3201192-3201211 None:intergenic 50.0%
GGTCATGGTTGAGTCCAAGT+GGG - chr1_3:3201415-3201434 Msa0097390:CDS 50.0%
ACAACCAAGACGTTCCCACT+TGG + chr1_3:3201432-3201451 None:intergenic 50.0%
GTTGTGCTTGAAGAATGGGG+AGG - chr1_3:3201447-3201466 Msa0097390:five_prime_UTR 50.0%
GATGGGTGAGCTGAGGTGAA+GGG + chr1_3:3195932-3195951 None:intergenic 55.0%
! TGATGGGTGAGCTGAGGTGA+AGG + chr1_3:3195933-3195952 None:intergenic 55.0%
! TGCTTCTGATGGGTGAGCTG+AGG + chr1_3:3195939-3195958 None:intergenic 55.0%
GGTGAGGTGTGTGCTTCTGA+TGG + chr1_3:3195950-3195969 None:intergenic 55.0%
CGGGTGTGCTTCTTGGATAG+TGG + chr1_3:3196329-3196348 None:intergenic 55.0%
! CTATCCAAGAAGCACACCCG+AGG - chr1_3:3196329-3196348 Msa0097390:CDS 55.0%
TGTACCTCGGGTGTGCTTCT+TGG + chr1_3:3196336-3196355 None:intergenic 55.0%
TGGGCTGCTCAAATGGCTGT+AGG - chr1_3:3198588-3198607 Msa0097390:intron 55.0%
! GGACTGAGAATTGGTCTGGC+TGG - chr1_3:3198965-3198984 Msa0097390:CDS 55.0%
GGAATCGTCGTCACTGGAGT+AGG + chr1_3:3200060-3200079 None:intergenic 55.0%
!! CACACCCCTTTTGGTTGCTC+TGG - chr1_3:3200587-3200606 Msa0097390:intron 55.0%
GCGACCAGAGCAACCAAAAG+GGG + chr1_3:3200594-3200613 None:intergenic 55.0%
GTGCGACCAGAGCAACCAAA+AGG + chr1_3:3200596-3200615 None:intergenic 55.0%
CTTGGACTCAACCATGACCG+AGG + chr1_3:3201414-3201433 None:intergenic 55.0%
CGGTCATGGTTGAGTCCAAG+TGG - chr1_3:3201414-3201433 Msa0097390:CDS 55.0%
GAGTCCAAGTGGGAACGTCT+TGG - chr1_3:3201425-3201444 Msa0097390:CDS 55.0%
TCGTCGTCACTGGAGTAGGC+AGG + chr1_3:3200056-3200075 None:intergenic 60.0%
ACAACCTTTGACGCGCCGAG+TGG - chr1_3:3201106-3201125 Msa0097390:intron 60.0%
GAATGGGGAGGTGACCCTAC+TGG - chr1_3:3201459-3201478 Msa0097390:five_prime_UTR 60.0%
GCCACTGGATCGCTGCCACT+CGG + chr1_3:3201124-3201143 None:intergenic 65.0%
GCTGCCACTCGGCGCGTCAA+AGG + chr1_3:3201113-3201132 None:intergenic 70.0%
GCCGAGTGGCAGCGATCCAG+TGG - chr1_3:3201120-3201139 Msa0097390:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3195764 3201853 3195764 ID=Msa0097390;Name=Msa0097390
chr1_3 mRNA 3195764 3201853 3195764 ID=Msa0097390-mRNA-1;Parent=Msa0097390;Name=Msa0097390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=407|1|1|1|1|1|18|347|730
chr1_3 exon 3195764 3196216 3195764 ID=Msa0097390-mRNA-1:exon:942;Parent=Msa0097390-mRNA-1
chr1_3 exon 3196306 3196511 3196306 ID=Msa0097390-mRNA-1:exon:941;Parent=Msa0097390-mRNA-1
chr1_3 exon 3196606 3196716 3196606 ID=Msa0097390-mRNA-1:exon:940;Parent=Msa0097390-mRNA-1
chr1_3 exon 3196819 3196929 3196819 ID=Msa0097390-mRNA-1:exon:939;Parent=Msa0097390-mRNA-1
chr1_3 exon 3197053 3197162 3197053 ID=Msa0097390-mRNA-1:exon:938;Parent=Msa0097390-mRNA-1
chr1_3 exon 3197252 3197361 3197252 ID=Msa0097390-mRNA-1:exon:937;Parent=Msa0097390-mRNA-1
chr1_3 exon 3197464 3197639 3197464 ID=Msa0097390-mRNA-1:exon:936;Parent=Msa0097390-mRNA-1
chr1_3 exon 3197741 3197905 3197741 ID=Msa0097390-mRNA-1:exon:935;Parent=Msa0097390-mRNA-1
chr1_3 exon 3198000 3198121 3198000 ID=Msa0097390-mRNA-1:exon:934;Parent=Msa0097390-mRNA-1
chr1_3 exon 3198203 3198290 3198203 ID=Msa0097390-mRNA-1:exon:933;Parent=Msa0097390-mRNA-1
chr1_3 exon 3198423 3198528 3198423 ID=Msa0097390-mRNA-1:exon:932;Parent=Msa0097390-mRNA-1
chr1_3 exon 3198631 3198719 3198631 ID=Msa0097390-mRNA-1:exon:931;Parent=Msa0097390-mRNA-1
chr1_3 exon 3198949 3199092 3198949 ID=Msa0097390-mRNA-1:exon:930;Parent=Msa0097390-mRNA-1
chr1_3 exon 3199251 3199343 3199251 ID=Msa0097390-mRNA-1:exon:929;Parent=Msa0097390-mRNA-1
chr1_3 exon 3199462 3199528 3199462 ID=Msa0097390-mRNA-1:exon:928;Parent=Msa0097390-mRNA-1
chr1_3 exon 3199623 3199735 3199623 ID=Msa0097390-mRNA-1:exon:927;Parent=Msa0097390-mRNA-1
chr1_3 exon 3199824 3199919 3199824 ID=Msa0097390-mRNA-1:exon:926;Parent=Msa0097390-mRNA-1
chr1_3 exon 3201267 3201853 3201267 ID=Msa0097390-mRNA-1:exon:925;Parent=Msa0097390-mRNA-1
chr1_3 five_prime_UTR 3201447 3201853 3201447 ID=Msa0097390-mRNA-1:five_prime_utr;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3201267 3201446 3201267 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3199824 3199919 3199824 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3199623 3199735 3199623 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3199462 3199528 3199462 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3199251 3199343 3199251 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3198949 3199092 3198949 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3198631 3198719 3198631 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3198423 3198528 3198423 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3198203 3198290 3198203 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3198000 3198121 3198000 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3197741 3197905 3197741 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3197464 3197639 3197464 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3197252 3197361 3197252 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3197053 3197162 3197053 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3196819 3196929 3196819 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3196606 3196716 3196606 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3196306 3196511 3196306 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 CDS 3196111 3196216 3196111 ID=Msa0097390-mRNA-1:cds;Parent=Msa0097390-mRNA-1
chr1_3 three_prime_UTR 3195764 3196110 3195764 ID=Msa0097390-mRNA-1:three_prime_utr;Parent=Msa0097390-mRNA-1
Gene Sequence

>Msa0097390

ATGATGGAGAATTTAACAATGCAAAAAGAGTTTCACATGCTGGGGTTGATTTTATTATTGTCTTTGTGGGTTTGTGGTGTTACTGCTTCAGTGAGTTATGATCACAAAGCCCTTGTGATTGATGGACAAAGAAGAATTTTGATATCTGGCTCCATCCACTATCCAAGAAGCACACCCGAGATGTGGCCAGACTTATTTCAAAAGGCTAAAGATGGAGGCCTTGATGTTATTCAAACCTATGTATTTTGGAATGGACATGAGCCTTCTCCTGGAAATTATTACTTCGAAGATAGATTTGACTTAGTAAAGTTTGTCAAGCTAGCACAACAAGCTGGTCTTTATGTTCACTTGCGTATTGGTCCCTACGTTTGTGCTGAATGGAATTATGGAGGATTTCCTGTTTGGCTCAAGTATGTTCCAGGGATGGCTTTCAGAACAGACAATGAGCCATTTAAGGCTGCTATGCAAAAATTCACGACCAAAATTGTGAACATGATGAAAGCAGAGAGTTTGTTTCAAACTCAGGGTGGTCCAATAATTATGTCTCAGATCGAGAATGAGTATGGACCTGTGGAATGGGAAATTGGTGCTCCTGGAAAGGCTTACACAAAATGGGCTGCTCAAATGGCTGTAGGTCTAGATACTGGTGTACCTTGGGACATGTGCAAGCAAGAAGACGCACCTGATCCCGTTATTGACACTTGCAATGGATATTACTGTGAAAACTTCACTCCCAACGAGAACTTTAAACCCAAAATGTGGACTGAGAATTGGTCTGGCTGGTACACTGATTTCGGTGGTGCTCTATCTCATAGACCAACTGAAGACTTGGCATACTCAGTTGCTAGATTCATACAAAATCGTGGCTCCTTTGTTAACTACTATATGTATCATGGAGGAACTAATTTTGGTCGAACATCTAGTGGCCTTTTTATTGCCACAAGCTATGATTATGATGCTCCTATTGATGAATATGGACTTCCAAATGAACCAAAATGGAGCCATCTGAAAAATTTACATAAAGCAATAAAACAATGTGAGCCAGCTTTGATTTCTGTGGATCCTACAGTCACATGGCTTGGAAATAAAAACCTTGAGGCGCATGTGTACTACGTAAGTACCAGTGTCTGTGCTGCATTCCTTGCAAACTACGACACAAAATCTGCGGCAACGGTTACATTTGGAAATGGCAAATATGATCTACCACCTTGGTCTGTCAGCATTCTTCCTGATTGCAAAACTGTAGTTTTCAACACGGCAACGGTTAATGGACATAGCTTCCATAAAAGGATGACTCCCGTGGATACTACATTTGATTGGCAGTCATACAGTGAAGAGCCTGCCTACTCCAGTGACGACGATTCCATCATAGCAAATGCACTTTGGGAGCAAATCAACGTTACTCGCGATTCTTCAGATTATCTGTGGTATTTGACAGATGTAAACATTAGTCCTAATGAAAGTTTTGTAAAGAATGGTCAATCTCCTACTCTTACCATAAATTCAGCAGGTCATGTTCTACATGTTTTTGTTAATGGTCAACTTTCAGGAACTGTGTATGGAGGATTGGATAATCCTAAATTAACATTTAGTGAAAGTGTTAACCTAAAGGTCGGCAATAACAAGATTTCTTTACTTAGTGTTGCTGTGGGTCTTCCGAATGTTGGTCTGCACTTTGAAACATGGAATGTTGGGGTGTTAGGCCCAGTAACATTGAAGGGTCTAGATGAGGGGACAAGAGACTTGTCTTGGCAGAAATGGTCTTACAAGGTTGGACTAAAGGGTGAATCTTTGAGCCTTCATACCATAACTGGAAGTTCCTCCATTGATTGGACACAAGGATCATCATTGGTTAAAAAACAACCTTTGACATGGTACAAGACAACCTTTGACGCGCCGAGTGGCAGCGATCCAGTGGCACTAGATATGAGTAGCATGGGAAAGGGTGAAATATGGATAAACGACCAAAGCATTGGTCGTCATTGGCCTGCATATATAGCACATGGTAATTGTGATGAATGTAATTACGCTGGAACTTTTACTAATCCAAAATGCAGGACAAATTGTGGAGAACCAACACAGAAATGGTATCATATTCCTCGGTCATGGTTGAGTCCAAGTGGGAACGTCTTGGTTGTGCTTGAAGAATGGGGAGGTGACCCTACTGGAATTTCATTGGTGAAAAGAACATGA
Protein sequence

>Msa0097390

MMENLTMQKEFHMLGLILLLSLWVCGVTASVSYDHKALVIDGQRRILISGSIHYPRSTPEMWPDLFQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRFDLVKFVKLAQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGMAFRTDNEPFKAAMQKFTTKIVNMMKAESLFQTQGGPIIMSQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWDMCKQEDAPDPVIDTCNGYYCENFTPNENFKPKMWTENWSGWYTDFGGALSHRPTEDLAYSVARFIQNRGSFVNYYMYHGGTNFGRTSSGLFIATSYDYDAPIDEYGLPNEPKWSHLKNLHKAIKQCEPALISVDPTVTWLGNKNLEAHVYYVSTSVCAAFLANYDTKSAATVTFGNGKYDLPPWSVSILPDCKTVVFNTATVNGHSFHKRMTPVDTTFDWQSYSEEPAYSSDDDSIIANALWEQINVTRDSSDYLWYLTDVNISPNESFVKNGQSPTLTINSAGHVLHVFVNGQLSGTVYGGLDNPKLTFSESVNLKVGNNKISLLSVAVGLPNVGLHFETWNVGVLGPVTLKGLDEGTRDLSWQKWSYKVGLKGESLSLHTITGSSSIDWTQGSSLVKKQPLTWYKTTFDAPSGSDPVALDMSSMGKGEIWINDQSIGRHWPAYIAHGNCDECNYAGTFTNPKCRTNCGEPTQKWYHIPRSWLSPSGNVLVVLEEWGGDPTGISLVKRT*