AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0018060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018060 MtrunA17_Chr1g0152571 97.945 730 15 0 1 730 1 730 0.0 1496
Msa0018060 MtrunA17_Chr2g0299161 79.315 730 146 2 1 730 2 726 0.0 1234
Msa0018060 MtrunA17_Chr8g0342001 68.552 725 224 3 7 729 1 723 0.0 1080
Msa0018060 MtrunA17_Chr2g0330291 70.904 708 202 3 24 729 21 726 0.0 1061
Msa0018060 MtrunA17_Chr8g0372421 61.423 731 276 5 2 730 1 727 0.0 964
Msa0018060 MtrunA17_Chr3g0142001 63.056 720 261 4 14 730 9 726 0.0 961
Msa0018060 MtrunA17_Chr1g0155701 63.262 705 254 5 27 729 25 726 0.0 958
Msa0018060 MtrunA17_Chr5g0404841 61.970 731 269 7 2 730 1 724 0.0 953
Msa0018060 MtrunA17_Chr2g0326481 59.254 724 274 8 17 729 6 719 0.0 867
Msa0018060 MtrunA17_Chr4g0029301 56.868 728 285 9 17 726 6 722 0.0 827
Msa0018060 MtrunA17_Chr3g0130711 54.910 723 312 6 18 729 14 733 0.0 786
Msa0018060 MtrunA17_Chr8g0378221 50.931 752 320 10 17 726 30 774 0.0 758
Msa0018060 MtrunA17_Chr3g0124931 50.621 725 307 17 10 726 6 687 0.0 679
Msa0018060 MtrunA17_Chr3g0130721 50.622 723 314 13 13 726 10 698 0.0 676
Msa0018060 MtrunA17_Chr5g0408371 49.083 709 345 10 31 730 28 729 0.0 674
Msa0018060 MtrunA17_Chr5g0406921 48.515 707 347 10 31 726 28 728 0.0 672
Msa0018060 MtrunA17_Chr2g0301001 49.579 712 336 13 31 726 27 731 0.0 662
Msa0018060 MtrunA17_Chr4g0037031 45.442 735 367 12 1 727 3 711 0.0 652
Msa0018060 MtrunA17_Chr3g0077531 46.492 727 363 12 13 722 5 722 0.0 650
Msa0018060 MtrunA17_Chr3g0145581 45.851 711 346 14 24 727 29 707 0.0 631
Msa0018060 MtrunA17_Chr2g0326491 57.700 513 163 5 17 477 6 516 0.0 606
Msa0018060 MtrunA17_Chr2g0326441 68.794 282 86 1 17 296 6 287 3.92e-146 429
Msa0018060 MtrunA17_Chr2g0326451 51.914 418 178 8 325 729 23 430 2.72e-131 400
Msa0018060 MtrunA17_Chr4g0071281 54.110 292 84 2 430 721 2 243 7.51e-99 305
Msa0018060 MtrunA17_Chr2g0326521 46.479 213 84 5 521 729 7 193 6.53e-51 179
Msa0018060 MtrunA17_Chr4g0071291 59.091 132 22 1 27 158 18 117 5.86e-47 163
Msa0018060 MtrunA17_Chr8g0372581 53.191 141 45 2 152 291 9 129 1.96e-44 156
Msa0018060 MtrunA17_Chr5g0405781 45.503 189 78 3 179 367 48 211 1.80e-41 155
Msa0018060 MtrunA17_Chr2g0330191 32.622 328 184 9 41 339 64 383 5.05e-33 135
Msa0018060 MtrunA17_Chr2g0307981 30.970 268 149 7 455 718 56 291 9.35e-29 117
Msa0018060 MtrunA17_Chr4g0021711 73.333 45 11 1 152 196 47 90 1.15e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0018060 AT4G26140.1 70.069 725 210 6 8 730 7 726 0.0 1097
Msa0018060 AT4G26140.7 67.867 750 209 7 8 730 7 751 0.0 1083
Msa0018060 AT5G56870.1 71.053 722 204 5 9 730 8 724 0.0 1068
Msa0018060 AT3G52840.2 67.538 727 233 3 4 730 56 779 0.0 1065
Msa0018060 AT3G13750.1 69.091 715 217 3 17 729 20 732 0.0 1064
Msa0018060 AT3G52840.1 67.538 727 233 3 4 730 2 725 0.0 1062
Msa0018060 AT4G26140.9 67.598 716 200 7 8 696 7 717 0.0 1026
Msa0018060 AT4G36360.2 62.901 717 258 5 16 730 22 732 0.0 968
Msa0018060 AT4G36360.1 62.901 717 258 5 16 730 22 732 0.0 968
Msa0018060 AT1G45130.1 62.691 721 261 5 16 730 12 730 0.0 959
Msa0018060 AT4G26140.3 70.806 620 176 5 8 627 7 621 0.0 936
Msa0018060 AT4G26140.2 70.806 620 176 5 8 627 7 621 0.0 936
Msa0018060 AT4G26140.6 70.579 622 176 6 8 627 7 623 0.0 931
Msa0018060 AT2G28470.1 59.777 716 269 8 26 729 27 735 0.0 882
Msa0018060 AT2G28470.3 59.777 716 269 8 26 729 27 735 0.0 882
Msa0018060 AT2G28470.2 59.777 716 269 8 26 729 21 729 0.0 881
Msa0018060 AT2G28470.4 59.777 716 269 8 26 729 21 729 0.0 881
Msa0018060 AT1G45130.2 61.778 641 241 4 92 730 13 651 0.0 847
Msa0018060 AT2G28470.5 59.531 682 257 8 25 694 26 700 0.0 831
Msa0018060 AT4G26140.8 71.350 548 150 6 8 553 7 549 0.0 828
Msa0018060 AT4G26140.4 68.412 573 149 7 8 553 7 574 0.0 815
Msa0018060 AT4G26140.5 68.412 573 149 7 8 553 7 574 0.0 815
Msa0018060 AT5G63810.1 54.608 727 316 6 13 729 14 736 0.0 795
Msa0018060 AT2G32810.1 52.105 760 325 11 1 726 1 755 0.0 775
Msa0018060 AT2G32810.2 52.105 760 325 11 1 726 1 755 0.0 774
Msa0018060 AT5G20710.1 48.686 723 355 10 14 726 12 728 0.0 685
Msa0018060 AT5G63800.1 48.980 735 329 15 5 726 1 702 0.0 666
Msa0018060 AT1G77410.1 48.061 722 329 15 14 726 8 692 0.0 654
Msa0018060 AT1G77410.3 47.730 727 329 16 14 726 8 697 0.0 648
Msa0018060 AT1G31740.1 45.753 730 332 13 13 726 1 682 0.0 634
Msa0018060 AT2G16730.1 45.087 692 347 9 31 716 44 708 0.0 616
Msa0018060 AT4G35010.1 44.444 693 350 12 31 716 41 705 0.0 595
Msa0018060 AT4G38590.1 44.078 667 337 11 61 719 1 639 0.0 560
Msa0018060 AT4G38590.2 41.313 731 372 14 12 719 7 703 0.0 553
Msa0018060 AT1G77410.2 46.777 605 276 15 131 726 19 586 2.49e-173 514
Msa0018060 AT1G77410.4 46.777 605 276 15 131 726 19 586 2.49e-173 514
Msa0018060 AT5G20710.2 43.371 528 284 9 209 726 1 523 1.33e-143 434
Msa0018060 AT2G04060.1 34.865 370 163 10 296 663 23 316 1.22e-50 184
Msa0018060 AT1G72990.3 36.061 330 174 9 41 341 18 339 1.22e-44 170
Msa0018060 AT1G72990.1 36.061 330 174 9 41 341 73 394 2.16e-44 170
Msa0018060 AT1G72990.4 36.061 330 174 9 41 341 73 394 2.16e-44 170
Msa0018060 AT1G72990.2 34.483 319 172 9 52 341 22 332 1.89e-38 152
Msa0018060 AT2G04062.1 39.888 178 86 2 25 202 1 157 2.06e-33 126

Find 215 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATATTAATTTGGTAATT+TGG 0.113818 1_1:+30156917 None:intergenic
TTATTCAAACCTATGTATTT+TGG 0.134516 1_1:-30160699 Msa0018060:CDS
CCACAATTTGTCCTGCATTT+TGG 0.151033 1_1:+30157173 None:intergenic
TTTGTTAATGGTCAACTTTC+AGG 0.158124 1_1:-30158100 Msa0018060:intron
CCAATTCTCAGTCCACATTT+TGG 0.160554 1_1:+30159488 None:intergenic
TTTACAAAGCCAAACTATTT+TGG 0.166100 1_1:-30156765 Msa0018060:three_prime_UTR
AACATGACCTGCTGAATTTA+TGG 0.167665 1_1:+30158132 None:intergenic
AACAGACAATGAGCCATTTA+AGG 0.176309 1_1:-30160309 Msa0018060:intron
TTTACCTGAGACATAATTAT+TGG 0.179827 1_1:+30160094 None:intergenic
ACTAATTTCATGCAGGTTAA+TGG 0.191236 1_1:-30158481 Msa0018060:intron
AAATTTAAACCATATTAATT+TGG 0.205822 1_1:+30156909 None:intergenic
CAAATTTATTTATGCCAAAA+TGG 0.212151 1_1:+30156685 None:intergenic
CTTTCACTAAATGTTAATTT+AGG 0.219363 1_1:+30157963 None:intergenic
TAAGAGTAGAAAGGTGAATA+AGG 0.219467 1_1:+30162037 None:intergenic
TTTCATCATGTTCACAATTT+TGG 0.227558 1_1:+30160147 None:intergenic
CTGGAAAGGCTTACACAAAA+TGG 0.230100 1_1:-30159876 Msa0018060:CDS
GTTTGTGCTGAATGGAATTA+TGG 0.235478 1_1:-30160471 Msa0018060:CDS
ATTGAAACTCCAACCTTAAA+TGG 0.236195 1_1:+30160296 None:intergenic
TGAGCACTATTGTTCCATTT+TGG 0.241327 1_1:-30156699 Msa0018060:three_prime_UTR
ACCAAATTACCAAATTAATA+TGG 0.255729 1_1:-30156918 Msa0018060:three_prime_UTR
TATCATGGAGGAACTAATTT+TGG 0.268539 1_1:-30159117 Msa0018060:CDS
AATATCTTCGTTACATTTCC+AGG 0.270788 1_1:+30160658 None:intergenic
CATTTCTGCATCCAATCTTT+TGG 0.273132 1_1:+30156809 None:intergenic
TTGAGCCTTCATACCATAAC+TGG 0.288620 1_1:-30157522 Msa0018060:CDS
TCTTGTTATTGCCGACCTTT+AGG 0.289024 1_1:+30157934 None:intergenic
CAATATTCACCAAAATAGTT+TGG 0.300815 1_1:+30156756 None:intergenic
TCTAGACCCTTCAATGTTAC+TGG 0.308225 1_1:+30157711 None:intergenic
CATAGCTTGTGGCAATAAAA+AGG 0.308874 1_1:+30159079 None:intergenic
TTCTATAGGTACACTGATTT+CGG 0.310712 1_1:-30159363 Msa0018060:intron
CTCCTTTGTTAACTACTATA+TGG 0.312217 1_1:-30159271 Msa0018060:intron
CACAAAATGGGCTGCTCAAA+TGG 0.319547 1_1:-30159863 Msa0018060:CDS
ATGGACATAGCTTCCATAAA+AGG 0.323182 1_1:-30158462 Msa0018060:CDS
TGTACCTCGGGTGTGCTTCT+TGG 0.329719 1_1:+30161750 None:intergenic
GCATGGGAAAGGGTGAAATA+TGG 0.334337 1_1:-30157286 Msa0018060:CDS
CTTTATGTTCACTTGCGTAT+TGG 0.343254 1_1:-30160501 Msa0018060:CDS
TAGTGTTGCTGTGGGTCTTC+CGG 0.356885 1_1:-30157901 Msa0018060:intron
GACTTCCAAATGAACCAAAA+TGG 0.361446 1_1:-30158948 Msa0018060:CDS
TCAAGTTTACACCAAAAGAT+TGG 0.366104 1_1:-30156820 Msa0018060:three_prime_UTR
CATCATAGCAAATGCACTTT+GGG 0.376087 1_1:-30158365 Msa0018060:CDS
TGCATACCATATTCATCAAT+AGG 0.379546 1_1:+30159045 None:intergenic
GTTTGGCTCAAGTATGTTCC+AGG 0.380815 1_1:-30160344 Msa0018060:CDS
CTGGAAGTTCCTCCATTGAT+TGG 0.382186 1_1:-30157503 Msa0018060:CDS
GTTACAAGCTCTATAATTCA+TGG 0.383874 1_1:+30156731 None:intergenic
CACAAAGCTCTTGTGATTGA+TGG 0.384855 1_1:-30161810 Msa0018060:CDS
AGAGCTAAAGTTTCCTTAAC+GGG 0.386352 1_1:-30162293 Msa0018060:five_prime_UTR
TTCTTTACAAAACTTTCATT+AGG 0.386816 1_1:+30158175 None:intergenic
TGATAGATCGAGAATGAGTA+TGG 0.388987 1_1:-30159925 Msa0018060:intron
GGACCTGTGGAATGGGAAAT+TGG 0.390507 1_1:-30159904 Msa0018060:CDS
GATGCTCCTATTGATGAATA+TGG 0.390606 1_1:-30159051 Msa0018060:intron
CCAAAGTGCATTTGCTATGA+TGG 0.390990 1_1:+30158366 None:intergenic
ACATGGAATGTTGGGGTGTT+AGG 0.391351 1_1:-30157735 Msa0018060:CDS
TCTGCTGCAACGGTTACATT+TGG 0.393879 1_1:-30158669 Msa0018060:CDS
TGTGCAGAGGATTTCCCGTT+TGG 0.394642 1_1:-30160361 Msa0018060:intron
CCAAAATGTGGACTGAGAAT+TGG 0.399232 1_1:-30159488 Msa0018060:CDS
TTCACAAGCATTGCCCGTTA+AGG 0.399673 1_1:+30162280 None:intergenic
TATATTTGATTGTAGTATCA+TGG 0.404132 1_1:-30159132 Msa0018060:intron
AATGGACATGAGCCTTCTCC+TGG 0.408664 1_1:-30160676 Msa0018060:CDS
CATGTAAAGTTGCTTGCAAA+TGG 0.412650 1_1:-30156643 Msa0018060:three_prime_UTR
AAGAGCTAAAGTTTCCTTAA+CGG 0.416490 1_1:-30162294 Msa0018060:five_prime_UTR
GAGACTTGTCTTGGCAGAAA+TGG 0.417613 1_1:-30157677 Msa0018060:CDS
CCATCATAGCAAATGCACTT+TGG 0.421070 1_1:-30158366 Msa0018060:CDS
GTCCCTACGTTTGTGCTGAA+TGG 0.427816 1_1:-30160479 Msa0018060:CDS
TCTTTACTTAGTGTTGCTGT+GGG 0.428806 1_1:-30157909 Msa0018060:CDS
ACCAAAGCATTGGTCGTCAT+TGG 0.431882 1_1:-30157256 Msa0018060:CDS
GCCAATGACGACCAATGCTT+TGG 0.432093 1_1:+30157255 None:intergenic
TTCTTTACTTAGTGTTGCTG+TGG 0.433115 1_1:-30157910 Msa0018060:CDS
AACAAAAGACACACCATTGT+TGG 0.435048 1_1:-30161982 Msa0018060:five_prime_UTR
AGAGAGTTTGTTTCAAACTC+AGG 0.436146 1_1:-30160122 Msa0018060:CDS
GCAACGGTTACATTTGGAAA+TGG 0.438695 1_1:-30158663 Msa0018060:CDS
TTATTGTCTTTGTGGGTTTG+TGG 0.439850 1_1:-30161858 Msa0018060:CDS
ACAAAAGACACACCATTGTT+GGG 0.443066 1_1:-30161981 Msa0018060:five_prime_UTR
TGTGAATGATTTAGAAGAGC+AGG 0.443201 1_1:-30162251 Msa0018060:five_prime_UTR
TGACCCTACTGGAATTTCAT+TGG 0.446479 1_1:-30156974 Msa0018060:CDS
CTTGGTTGTGCTTGAAGAAT+GGG 0.453865 1_1:-30157001 Msa0018060:CDS
TTGGACACAAGGATCATCAT+TGG 0.454214 1_1:-30157484 Msa0018060:CDS
AAGAGTAGAAAGGTGAATAA+GGG 0.454282 1_1:+30162038 None:intergenic
TTCGTTACATTTCCAGGAGA+AGG 0.456508 1_1:+30160664 None:intergenic
GTTGGATAGGTTGGACTAAA+GGG 0.457143 1_1:-30157552 Msa0018060:intron
GGAACATACTTGAGCCAAAC+GGG 0.461421 1_1:+30160347 None:intergenic
TGGAAAGGCTTACACAAAAT+GGG 0.465526 1_1:-30159875 Msa0018060:CDS
GTGGAGAACCAACACAGAAA+TGG 0.465677 1_1:-30157154 Msa0018060:intron
TAGTGAAAGTGTTAACCTAA+AGG 0.466295 1_1:-30157949 Msa0018060:CDS
GGTAAACTTACAACGGGATC+AGG 0.468492 1_1:+30159787 None:intergenic
AAATCTTACCATTTCTGTGT+TGG 0.468836 1_1:+30157146 None:intergenic
TCAAATTAATACCAGAATGT+TGG 0.472200 1_1:-30157771 Msa0018060:intron
GAAAACGATGGGAAGAGAAG+GGG 0.474585 1_1:+30162208 None:intergenic
TGGTCCAATAATTATGTCTC+AGG 0.477103 1_1:-30160098 Msa0018060:intron
TTGGGTTTAAAGTTCTCGTT+GGG 0.479071 1_1:+30159507 None:intergenic
ACTTTGAAACATGGAATGTT+GGG 0.479098 1_1:-30157743 Msa0018060:CDS
TTATTTCAAAAGGCTAAAGA+TGG 0.480940 1_1:-30160733 Msa0018060:CDS
GTGGCCAGACTTATTTCAAA+AGG 0.481426 1_1:-30160743 Msa0018060:CDS
AAATTTGTTTCTCTTTACAT+TGG 0.482332 1_1:-30156669 Msa0018060:three_prime_UTR
CGGGTGTGCTTCTTGGATAG+TGG 0.483949 1_1:+30161757 None:intergenic
TTTGTGCTGAATGGAATTAT+GGG 0.485197 1_1:-30160470 Msa0018060:intron
AATGGAGGAACTTCCAGTTA+TGG 0.487302 1_1:+30157509 None:intergenic
CTTCGAAGATAGATTTGACT+TGG 0.487587 1_1:-30160556 Msa0018060:CDS
CACTTTGAAACATGGAATGT+TGG 0.488183 1_1:-30157744 Msa0018060:CDS
TCTTGGTTGTGCTTGAAGAA+TGG 0.488347 1_1:-30157002 Msa0018060:CDS
TCTGTTCTGAAAGCCATCCC+TGG 0.489582 1_1:+30160326 None:intergenic
GTCTAGATACTGGTGTACCT+TGG 0.490231 1_1:-30159834 Msa0018060:CDS
TCTAGATACTGGTGTACCTT+GGG 0.490711 1_1:-30159833 Msa0018060:CDS
ACGAATGTAGGAACTGTGTA+TGG 0.498064 1_1:-30157999 Msa0018060:intron
GGAAAACGATGGGAAGAGAA+GGG 0.498567 1_1:+30162207 None:intergenic
TGATATTTATAAGAGTAGAA+AGG 0.499445 1_1:+30162028 None:intergenic
CCGTGGATACTACATTTGAT+TGG 0.501200 1_1:-30158432 Msa0018060:CDS
TGGAAAACGATGGGAAGAGA+AGG 0.501436 1_1:+30162206 None:intergenic
GAATGGGGAGGTGACCCTAC+TGG 0.503961 1_1:-30156985 Msa0018060:CDS
GATCCTACAGTCACATGGCT+TGG 0.504519 1_1:-30158865 Msa0018060:CDS
CCAAAATGCAGGACAAATTG+TGG 0.507299 1_1:-30157173 Msa0018060:CDS
ATGGCTGTAGGTCTAGATAC+TGG 0.511595 1_1:-30159844 Msa0018060:CDS
GCTGCCACTCGGCGCGTCAA+AGG 0.512668 1_1:+30157334 None:intergenic
GAATGGGAAATTGGTGCTCC+TGG 0.513051 1_1:-30159895 Msa0018060:CDS
TGTTGGATAGGTTGGACTAA+AGG 0.513449 1_1:-30157553 Msa0018060:intron
ATGTGGACTGAGAATTGGTC+TGG 0.514008 1_1:-30159483 Msa0018060:CDS
GCTCAAGTATGTTCCAGGGA+TGG 0.514701 1_1:-30160339 Msa0018060:CDS
AATAAGGGACTTAGAGAAAA+CGG 0.514949 1_1:+30162053 None:intergenic
AAAACGATGGGAAGAGAAGG+GGG 0.516601 1_1:+30162209 None:intergenic
GAGAGTTTGTTTCAAACTCA+GGG 0.516652 1_1:-30160121 Msa0018060:CDS
CTAGACCCTTCAATGTTACT+GGG 0.516715 1_1:+30157712 None:intergenic
CTTACCTTGTACCATGTCAA+AGG 0.519467 1_1:+30157450 None:intergenic
ATGTCCATTCCAAAATACAT+AGG 0.521663 1_1:+30160690 None:intergenic
CTACTCATATCTAGTGCCAC+TGG 0.522187 1_1:+30157308 None:intergenic
TGGATAGGTATCATATTCCT+CGG 0.523367 1_1:-30157050 Msa0018060:intron
AACTTCCAGTTATGGTATGA+AGG 0.525743 1_1:+30157517 None:intergenic
TTTATAGATTTGGAAAACGA+TGG 0.528614 1_1:+30162196 None:intergenic
TTACCATGTGCTATATATGC+AGG 0.531919 1_1:+30157233 None:intergenic
TCTTGCTTGCACATGTCCCA+AGG 0.532274 1_1:+30159817 None:intergenic
AGATATGAGTAGCATGGGAA+AGG 0.533528 1_1:-30157297 Msa0018060:CDS
TTGGCAGAAATGGTCTTACA+AGG 0.535055 1_1:-30157667 Msa0018060:intron
TTTGGGTTTAAAGTTCTCGT+TGG 0.535843 1_1:+30159506 None:intergenic
GTTAGGCCCAGTAACATTGA+AGG 0.535870 1_1:-30157718 Msa0018060:CDS
GCCACTGGATCGCTGCCACT+CGG 0.538573 1_1:+30157323 None:intergenic
ACTTTAGCTCTTTAGCATTG+TGG 0.539845 1_1:+30162305 None:intergenic
AGGAACTGTGTATGGAGGAT+TGG 0.540099 1_1:-30157991 Msa0018060:CDS
TGGAACATACTTGAGCCAAA+CGG 0.541950 1_1:+30160346 None:intergenic
TATGATGGAATCGTCGTCAC+TGG 0.542393 1_1:+30158381 None:intergenic
GTGAATGATTTAGAAGAGCA+GGG 0.543186 1_1:-30162250 Msa0018060:five_prime_UTR
TGGATAAACGACCAAAGCAT+TGG 0.545055 1_1:-30157266 Msa0018060:CDS
TCGTCGTCACTGGAGTAGGC+AGG 0.545444 1_1:+30158391 None:intergenic
AGGGGACAAGAGACTTGTCT+TGG 0.546148 1_1:-30157686 Msa0018060:CDS
ACTCTTACCATAAATTCAGC+AGG 0.547224 1_1:-30158139 Msa0018060:CDS
TCATAGACCAACTGAAGACT+TGG 0.549584 1_1:-30159328 Msa0018060:CDS
ACATTGAAGGGTCTAGATGA+GGG 0.549862 1_1:-30157705 Msa0018060:CDS
TGAGTATGGACCTGTGGAAT+GGG 0.552441 1_1:-30159911 Msa0018060:CDS
GAGTCCAAGTGGGAACGTCT+TGG 0.553534 1_1:-30157019 Msa0018060:CDS
GGTATCATATTCCTCGGTCA+TGG 0.554459 1_1:-30157044 Msa0018060:CDS
GGAATCGTCGTCACTGGAGT+AGG 0.554946 1_1:+30158387 None:intergenic
TGATCCTTGTGTCCAATCAA+TGG 0.555014 1_1:+30157491 None:intergenic
GATATGAGTAGCATGGGAAA+GGG 0.555262 1_1:-30157296 Msa0018060:CDS
GCACCAATTTCCCATTCCAC+AGG 0.555297 1_1:+30159901 None:intergenic
TTTCCAAGCCATGTGACTGT+AGG 0.556295 1_1:+30158862 None:intergenic
ACAACCTTTGACATGGTACA+AGG 0.556753 1_1:-30157454 Msa0018060:intron
GGACTGAGAATTGGTCTGGC+TGG 0.561829 1_1:-30159479 Msa0018060:intron
TTATAGATTTGGAAAACGAT+GGG 0.562301 1_1:+30162197 None:intergenic
CGACACAAAATCTGCTGCAA+CGG 0.562966 1_1:-30158679 Msa0018060:CDS
CCAATCAAATGTAGTATCCA+CGG 0.564185 1_1:+30158432 None:intergenic
GCACTAGATATGAGTAGCAT+GGG 0.566286 1_1:-30157302 Msa0018060:CDS
GGCACTAGATATGAGTAGCA+TGG 0.566466 1_1:-30157303 Msa0018060:CDS
GGAAATTGGTGCTCCTGGAA+AGG 0.566691 1_1:-30159890 Msa0018060:CDS
TGGGCTGCTCAAATGGCTGT+AGG 0.566955 1_1:-30159856 Msa0018060:CDS
CATAGGTTTGAATAACATCA+AGG 0.569765 1_1:+30160707 None:intergenic
ATGAGTATGGACCTGTGGAA+TGG 0.571228 1_1:-30159912 Msa0018060:CDS
TCCTCCATTGATTGGACACA+AGG 0.572202 1_1:-30157495 Msa0018060:CDS
TTTCAAAAGGCTAAAGATGG+AGG 0.574864 1_1:-30160730 Msa0018060:CDS
TTCCATTCAGCACAAACGTA+GGG 0.575351 1_1:+30160477 None:intergenic
GTCAAGCTAGCACAACAAGC+TGG 0.575439 1_1:-30160525 Msa0018060:CDS
CTGTGGATCCTACAGTCACA+TGG 0.578432 1_1:-30158870 Msa0018060:CDS
GGATCCACAGAAATCAAAGC+TGG 0.580873 1_1:+30158883 None:intergenic
GCCGAGTGGCAGCGATCCAG+TGG 0.582197 1_1:-30157324 Msa0018060:CDS
GCTGAATTTATGGTAAGAGT+AGG 0.582723 1_1:+30158142 None:intergenic
TGAGCCAGCTTTGATTTCTG+TGG 0.583476 1_1:-30158887 Msa0018060:CDS
TCACCAATGAAATTCCAGTA+GGG 0.584721 1_1:+30156971 None:intergenic
AACATTGAAGGGTCTAGATG+AGG 0.588983 1_1:-30157706 Msa0018060:CDS
TGATGGGTGAGCTGAGGTGA+AGG 0.592087 1_1:+30162153 None:intergenic
TTCACCAATGAAATTCCAGT+AGG 0.593759 1_1:+30156970 None:intergenic
AAACGATGGGAAGAGAAGGG+GGG 0.595907 1_1:+30162210 None:intergenic
CAATCAAATGTAGTATCCAC+GGG 0.596448 1_1:+30158433 None:intergenic
TTGTAGATTGACACTTGCAA+TGG 0.599307 1_1:-30159552 Msa0018060:intron
GCAAATATGATCTACCACCT+TGG 0.599730 1_1:-30158641 Msa0018060:CDS
ACAACCAAGACGTTCCCACT+TGG 0.601417 1_1:+30157015 None:intergenic
GAAAGTGTTAACCTAAAGGT+CGG 0.607496 1_1:-30157945 Msa0018060:CDS
AAGGAATGCAGCACAGACAC+TGG 0.612057 1_1:+30158710 None:intergenic
AGAACTTTAAACCCAAAATG+TGG 0.614315 1_1:-30159500 Msa0018060:CDS
TGTGCTTCTTGGATAGTGGA+TGG 0.615066 1_1:+30161761 None:intergenic
TTGGTCTGCACTTTGAAACA+TGG 0.615627 1_1:-30157752 Msa0018060:CDS
GGAAGAATGCTGACAGACCA+AGG 0.618216 1_1:+30158624 None:intergenic
TTAGCTCTTTAGCATTGTGG+AGG 0.618325 1_1:+30162308 None:intergenic
CGGTCATGGTTGAGTCCAAG+TGG 0.619900 1_1:-30157030 Msa0018060:CDS
GCGATTCTTCAGATTATCTG+TGG 0.622203 1_1:-30158324 Msa0018060:CDS
TTTGGCTCAAGTATGTTCCA+GGG 0.624074 1_1:-30160343 Msa0018060:CDS
GAGTATGCCAAGTCTTCAGT+TGG 0.624897 1_1:+30159321 None:intergenic
TATAGGTACACTGATTTCGG+TGG 0.628326 1_1:-30159360 Msa0018060:intron
CGAGAATGAGTATGGACCTG+TGG 0.628829 1_1:-30159917 Msa0018060:CDS
GATGGGTGAGCTGAGGTGAA+GGG 0.629309 1_1:+30162154 None:intergenic
TTAGGCCCAGTAACATTGAA+GGG 0.630859 1_1:-30157717 Msa0018060:CDS
AGCATCATAATCATAGCTTG+TGG 0.636529 1_1:+30159068 None:intergenic
TGTGATGAATGTAATTACGC+TGG 0.639969 1_1:-30157209 Msa0018060:CDS
TTGGTTGTGCTTGAAGAATG+GGG 0.644178 1_1:-30157000 Msa0018060:CDS
TACCATATAGTAGTTAACAA+AGG 0.653367 1_1:+30159269 None:intergenic
GCTAGATTCATACAAAATCG+TGG 0.659974 1_1:-30159294 Msa0018060:CDS
CCATAAAAGGATGACTCCCG+TGG 0.660532 1_1:-30158449 Msa0018060:CDS
TGGCCTGCATATATAGCACA+TGG 0.662930 1_1:-30157236 Msa0018060:CDS
CATTGAAGGGTCTAGATGAG+GGG 0.664668 1_1:-30157704 Msa0018060:CDS
ACAACCTTTGACGCGCCGAG+TGG 0.672410 1_1:-30157338 Msa0018060:CDS
AATGTAGGAACTGTGTATGG+AGG 0.673732 1_1:-30157996 Msa0018060:intron
ATTCCATTCAGCACAAACGT+AGG 0.678066 1_1:+30160476 None:intergenic
CTTTGAAACATGGAATGTTG+GGG 0.679854 1_1:-30157742 Msa0018060:CDS
TCCTTGTGTCCAATCAATGG+AGG 0.680608 1_1:+30157494 None:intergenic
ATTTGATTGTAGTATCATGG+AGG 0.681855 1_1:-30159129 Msa0018060:intron
CTTGGACTCAACCATGACCG+AGG 0.682721 1_1:+30157033 None:intergenic
GGTCATGGTTGAGTCCAAGT+GGG 0.689731 1_1:-30157029 Msa0018060:CDS
AGTTTGTTTCAAACTCAGGG+TGG 0.697300 1_1:-30160118 Msa0018060:CDS
CTATCCAAGAAGCACACCCG+AGG 0.711494 1_1:-30161754 Msa0018060:intron
GTTGTGCTTGAAGAATGGGG+AGG 0.774502 1_1:-30156997 Msa0018060:CDS
AGAATGCTGACAGACCAAGG+TGG 0.820211 1_1:+30158627 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAAAATTTATAAA+AGG + chr1_1:30157673-30157692 None:intergenic 0.0%
!!! TAATTTAAATGAACTTTTTA+AGG + chr1_1:30157549-30157568 None:intergenic 10.0%
!!! AACTTAACATTTTAAATAAT+TGG + chr1_1:30157728-30157747 None:intergenic 10.0%
!!! TTTTTTTCTCAAAAAAATTA+AGG + chr1_1:30158045-30158064 None:intergenic 10.0%
!!! TTTTATTATAAAGTTTTTGT+TGG - chr1_1:30158884-30158903 Msa0018060:CDS 10.0%
!!! TATTTATAGCTTTAAATTAA+TGG + chr1_1:30159503-30159522 None:intergenic 10.0%
!! AAATTTAAACCATATTAATT+TGG + chr1_1:30162026-30162045 None:intergenic 10.0%
!! AATGAATAAATAAAAGAGAA+AGG + chr1_1:30157286-30157305 None:intergenic 15.0%
!!! AACAAACATATACATAATTT+TGG + chr1_1:30157336-30157355 None:intergenic 15.0%
!! TAGTTCAAAAATATTATTGA+GGG + chr1_1:30157434-30157453 None:intergenic 15.0%
!! TTAGTTCAAAAATATTATTG+AGG + chr1_1:30157435-30157454 None:intergenic 15.0%
!!! AACAGTCAAATTTTAAAATT+AGG - chr1_1:30157615-30157634 Msa0018060:intron 15.0%
!! AAAATGTTAAGTTATTTGAT+TGG - chr1_1:30157735-30157754 Msa0018060:CDS 15.0%
!!! TATAAAAAGATACTAACTTT+TGG + chr1_1:30157828-30157847 None:intergenic 15.0%
!!! TTTTAATTAATCCAAACTTT+TGG - chr1_1:30158721-30158740 Msa0018060:CDS 15.0%
!! ATTTAATCTAATACTGAAAT+TGG - chr1_1:30158970-30158989 Msa0018060:intron 15.0%
!! AAAGCTATAAATATTTCATT+TGG - chr1_1:30159510-30159529 Msa0018060:CDS 15.0%
!! AAGCTATAAATATTTCATTT+GGG - chr1_1:30159511-30159530 Msa0018060:CDS 15.0%
!! TTAACAAAAAAAATCAAACT+AGG + chr1_1:30160169-30160188 None:intergenic 15.0%
!!! TTTTTTGTTAATGTAATCTT+AGG - chr1_1:30160178-30160197 Msa0018060:intron 15.0%
!! CTTAAAACACATTAAAAATT+TGG - chr1_1:30160670-30160689 Msa0018060:intron 15.0%
!!! TTTTTTTTAATCTTTTGGAT+AGG - chr1_1:30161867-30161886 Msa0018060:CDS 15.0%
!! TGATATTTATAAGAGTAGAA+AGG + chr1_1:30156907-30156926 None:intergenic 20.0%
!!! TGATTTTATTATTGTCTTTG+TGG - chr1_1:30157066-30157085 Msa0018060:intron 20.0%
!!! GATTTTATTATTGTCTTTGT+GGG - chr1_1:30157067-30157086 Msa0018060:intron 20.0%
!! AAAAAAAGAGTTTAAACCAT+TGG - chr1_1:30157777-30157796 Msa0018060:intron 20.0%
!!! TTATTCAAACCTATGTATTT+TGG - chr1_1:30158233-30158252 Msa0018060:intron 20.0%
!! AAATAATTATTTATGTGCAG+AGG - chr1_1:30158558-30158577 Msa0018060:intron 20.0%
!! TAAATATTTCATTTGGGAAT+TGG - chr1_1:30159517-30159536 Msa0018060:CDS 20.0%
!! AAATATTTCATTTGGGAATT+GGG - chr1_1:30159518-30159537 Msa0018060:CDS 20.0%
!!! TTTTATGTTACCTATTCTAT+AGG - chr1_1:30159555-30159574 Msa0018060:intron 20.0%
!! TATATGGTATATGAATATGA+TGG - chr1_1:30159677-30159696 Msa0018060:intron 20.0%
!! TATATTTGATTGTAGTATCA+TGG - chr1_1:30159800-30159819 Msa0018060:CDS 20.0%
!! ATAAGGTTTAAATTGTTTCA+TGG - chr1_1:30159910-30159929 Msa0018060:CDS 20.0%
!!! CTTTATGTAAATTTTTCAGA+TGG + chr1_1:30160012-30160031 None:intergenic 20.0%
!!! CTTCAATAAAGTAACAATTT+TGG + chr1_1:30160146-30160165 None:intergenic 20.0%
!!! AAATTTTACTAATTTCATGC+AGG - chr1_1:30160444-30160463 Msa0018060:intron 20.0%
!!! TTAATGTGTTTTAAGAAGTT+AGG + chr1_1:30160665-30160684 None:intergenic 20.0%
!! TTCTTTACAAAACTTTCATT+AGG + chr1_1:30160760-30160779 None:intergenic 20.0%
!!! AATGAAAGTTTTGTAAAGAA+TGG - chr1_1:30160760-30160779 Msa0018060:intron 20.0%
!! TAAATTGGAATTTATCATGA+AGG + chr1_1:30160885-30160904 None:intergenic 20.0%
!! ATTAAGTTATATACGAATGT+AGG - chr1_1:30160921-30160940 Msa0018060:intron 20.0%
!! CTTTCACTAAATGTTAATTT+AGG + chr1_1:30160972-30160991 None:intergenic 20.0%
!! ACCAAATTACCAAATTAATA+TGG - chr1_1:30162014-30162033 Msa0018060:five_prime_UTR 20.0%
!!! ACCATATTAATTTGGTAATT+TGG + chr1_1:30162018-30162037 None:intergenic 20.0%
!! CAAATTTATTTATGCCAAAA+TGG + chr1_1:30162250-30162269 None:intergenic 20.0%
!!! AAATTTGTTTCTCTTTACAT+TGG - chr1_1:30162263-30162282 Msa0018060:five_prime_UTR 20.0%
! TTATAGATTTGGAAAACGAT+GGG + chr1_1:30156738-30156757 None:intergenic 25.0%
! TTTATAGATTTGGAAAACGA+TGG + chr1_1:30156739-30156758 None:intergenic 25.0%
!!! GAAAGTGCTTTTTATAGATT+TGG + chr1_1:30156749-30156768 None:intergenic 25.0%
!!! AGATAGAATGTTTTGTTACA+AGG + chr1_1:30156820-30156839 None:intergenic 25.0%
!!! CAAAGAAGAATTTTGATATC+TGG - chr1_1:30157146-30157165 Msa0018060:intron 25.0%
! GTTAAGTTATTTGATTGGTA+AGG - chr1_1:30157740-30157759 Msa0018060:CDS 25.0%
! GTTTAAACCATTGGTAAAAT+TGG - chr1_1:30157786-30157805 Msa0018060:intron 25.0%
! AAGGTAAAACTAAAAGCAAA+AGG - chr1_1:30157895-30157914 Msa0018060:intron 25.0%
! GTAGTATAGATACTTATTTG+TGG - chr1_1:30157949-30157968 Msa0018060:CDS 25.0%
! AATCTATCTTGTATAGATAC+AGG + chr1_1:30158084-30158103 None:intergenic 25.0%
!! ATTTTTCTTATGCAATGTCT+TGG - chr1_1:30158101-30158120 Msa0018060:CDS 25.0%
! TTATTTCAAAAGGCTAAAGA+TGG - chr1_1:30158199-30158218 Msa0018060:intron 25.0%
! TATACATCATACCAAAAGTT+TGG + chr1_1:30158735-30158754 None:intergenic 25.0%
! TGGTATGATGTATATATGTT+AGG - chr1_1:30158741-30158760 Msa0018060:intron 25.0%
!! TTTCATCATGTTCACAATTT+TGG + chr1_1:30158788-30158807 None:intergenic 25.0%
! TTTACCTGAGACATAATTAT+TGG + chr1_1:30158841-30158860 None:intergenic 25.0%
! TACCATATAGTAGTTAACAA+AGG + chr1_1:30159666-30159685 None:intergenic 25.0%
! TTAACGCCTTTCAAAATATT+AGG - chr1_1:30159962-30159981 Msa0018060:intron 25.0%
! ACTTCAAAAAACTTCTAACA+TGG + chr1_1:30160411-30160430 None:intergenic 25.0%
! ACTAATGTTTACACTGAAAA+TGG + chr1_1:30160737-30160756 None:intergenic 25.0%
!!! GTTCTACATGTTTTTGTTAA+TGG - chr1_1:30160820-30160839 Msa0018060:intron 25.0%
!! AAGGAATTTCTAAGAAGAAA+AGG + chr1_1:30160866-30160885 None:intergenic 25.0%
! TCAAATTAATACCAGAATGT+TGG - chr1_1:30161161-30161180 Msa0018060:intron 25.0%
!! TGAGACAAATTTTATGTTGT+TGG - chr1_1:30161362-30161381 Msa0018060:intron 25.0%
!! CAAATTTTATGTTGTTGGAT+AGG - chr1_1:30161367-30161386 Msa0018060:intron 25.0%
! TTAAAAAACAACCTTTGACA+TGG - chr1_1:30161471-30161490 Msa0018060:intron 25.0%
! AGATTTATTGAAAATGCAGA+TGG + chr1_1:30161554-30161573 None:intergenic 25.0%
!! TTTACAAAGCCAAACTATTT+TGG - chr1_1:30162167-30162186 Msa0018060:five_prime_UTR 25.0%
! CAATATTCACCAAAATAGTT+TGG + chr1_1:30162179-30162198 None:intergenic 25.0%
AAGAGCTAAAGTTTCCTTAA+CGG - chr1_1:30156638-30156657 Msa0018060:three_prime_UTR 30.0%
AATAAGGGACTTAGAGAAAA+CGG + chr1_1:30156882-30156901 None:intergenic 30.0%
AAGAGTAGAAAGGTGAATAA+GGG + chr1_1:30156897-30156916 None:intergenic 30.0%
TAAGAGTAGAAAGGTGAATA+AGG + chr1_1:30156898-30156917 None:intergenic 30.0%
! TATTTTTCTCAACCCAACAA+TGG + chr1_1:30156966-30156985 None:intergenic 30.0%
!! CTATTCAAGAGTTTTGATGA+TGG - chr1_1:30157004-30157023 Msa0018060:CDS 30.0%
AACTAATGTTGTACACATGT+TGG + chr1_1:30157232-30157251 None:intergenic 30.0%
GAGAAAGGAAAGCAATAATT+TGG + chr1_1:30157271-30157290 None:intergenic 30.0%
!!! ACATAATTTTGGTTCATGCA+TGG + chr1_1:30157325-30157344 None:intergenic 30.0%
!! TGTTTGTTGTTACTTAATCG+TGG - chr1_1:30157348-30157367 Msa0018060:intron 30.0%
AGTTATTTGATTGGTAAGGA+AGG - chr1_1:30157744-30157763 Msa0018060:CDS 30.0%
ATTGGTAAGGAAGGATAATA+TGG - chr1_1:30157753-30157772 Msa0018060:CDS 30.0%
AAACCATTGGTAAAATTGGA+AGG - chr1_1:30157790-30157809 Msa0018060:intron 30.0%
! TTTCCTTCCAATTTTACCAA+TGG + chr1_1:30157796-30157815 None:intergenic 30.0%
TCTTGTATAGATACAGGTAT+GGG + chr1_1:30158078-30158097 None:intergenic 30.0%
ATCTTGTATAGATACAGGTA+TGG + chr1_1:30158079-30158098 None:intergenic 30.0%
! CTTGTGTACATAAGTTTTCT+CGG - chr1_1:30158132-30158151 Msa0018060:CDS 30.0%
TATGTTTCTTAATGCAGATG+TGG - chr1_1:30158170-30158189 Msa0018060:CDS 30.0%
!!! TTAGCCTTTTGAAATAAGTC+TGG + chr1_1:30158196-30158215 None:intergenic 30.0%
CATAGGTTTGAATAACATCA+AGG + chr1_1:30158228-30158247 None:intergenic 30.0%
!! CAAACCTATGTATTTTGGAA+TGG - chr1_1:30158238-30158257 Msa0018060:intron 30.0%
ATGTCCATTCCAAAATACAT+AGG + chr1_1:30158245-30158264 None:intergenic 30.0%
AATATCTTCGTTACATTTCC+AGG + chr1_1:30158277-30158296 None:intergenic 30.0%
TTTGTGCTGAATGGAATTAT+GGG - chr1_1:30158462-30158481 Msa0018060:CDS 30.0%
ATTGAAACTCCAACCTTAAA+TGG + chr1_1:30158639-30158658 None:intergenic 30.0%
GGTACAAATTTGAAGGATAA+AGG - chr1_1:30159288-30159307 Msa0018060:CDS 30.0%
TGTCAATCTACAACATAGTT+CGG + chr1_1:30159373-30159392 None:intergenic 30.0%
AGAACTTTAAACCCAAAATG+TGG - chr1_1:30159432-30159451 Msa0018060:intron 30.0%
AATCAGTGTACCTATAGAAT+AGG + chr1_1:30159568-30159587 None:intergenic 30.0%
!! TTCTATAGGTACACTGATTT+CGG - chr1_1:30159569-30159588 Msa0018060:intron 30.0%
CTCCTTTGTTAACTACTATA+TGG - chr1_1:30159661-30159680 Msa0018060:intron 30.0%
ATTTGATTGTAGTATCATGG+AGG - chr1_1:30159803-30159822 Msa0018060:CDS 30.0%
! TATCATGGAGGAACTAATTT+TGG - chr1_1:30159815-30159834 Msa0018060:CDS 30.0%
TGCATACCATATTCATCAAT+AGG + chr1_1:30159890-30159909 None:intergenic 30.0%
GATGAATATGGTATGCAATA+AGG - chr1_1:30159893-30159912 Msa0018060:CDS 30.0%
!! GGAAGTCCTAATATTTTGAA+AGG + chr1_1:30159971-30159990 None:intergenic 30.0%
CTCAGTTCATGATAAGATTA+TGG - chr1_1:30160119-30160138 Msa0018060:CDS 30.0%
! AAAACTACAGTTTTGCAATC+AGG + chr1_1:30160332-30160351 None:intergenic 30.0%
! CAAAACTGTAGTTTTCAACA+CGG - chr1_1:30160337-30160356 Msa0018060:CDS 30.0%
ACTAATTTCATGCAGGTTAA+TGG - chr1_1:30160451-30160470 Msa0018060:intron 30.0%
TTTGTTAATGGTCAACTTTC+AGG - chr1_1:30160832-30160851 Msa0018060:intron 30.0%
!! TAGTGAAAGTGTTAACCTAA+AGG - chr1_1:30160983-30161002 Msa0018060:intron 30.0%
!! ACTTTGAAACATGGAATGTT+GGG - chr1_1:30161189-30161208 Msa0018060:intron 30.0%
! TTTTATGTTGTTGGATAGGT+TGG - chr1_1:30161371-30161390 Msa0018060:intron 30.0%
! CTTTTACTAATCCAAAATGC+AGG - chr1_1:30161748-30161767 Msa0018060:intron 30.0%
AAATCTTACCATTTCTGTGT+TGG + chr1_1:30161789-30161808 None:intergenic 30.0%
TGGTAAGATTTCATATAACG+AGG - chr1_1:30161798-30161817 Msa0018060:CDS 30.0%
TCAAGTTTACACCAAAAGAT+TGG - chr1_1:30162112-30162131 Msa0018060:five_prime_UTR 30.0%
GTTACAAGCTCTATAATTCA+TGG + chr1_1:30162204-30162223 None:intergenic 30.0%
!! ACTTTAGCTCTTTAGCATTG+TGG + chr1_1:30156630-30156649 None:intergenic 35.0%
AGAGCTAAAGTTTCCTTAAC+GGG - chr1_1:30156639-30156658 Msa0018060:three_prime_UTR 35.0%
TGTGAATGATTTAGAAGAGC+AGG - chr1_1:30156681-30156700 Msa0018060:three_prime_UTR 35.0%
GTGAATGATTTAGAAGAGCA+GGG - chr1_1:30156682-30156701 Msa0018060:three_prime_UTR 35.0%
!! GAATGTTTTGTTACAAGGTG+AGG + chr1_1:30156815-30156834 None:intergenic 35.0%
AACAAAAGACACACCATTGT+TGG - chr1_1:30156950-30156969 Msa0018060:exon 35.0%
ACAAAAGACACACCATTGTT+GGG - chr1_1:30156951-30156970 Msa0018060:exon 35.0%
CAAAAAGAGTTTCACATGCT+GGG - chr1_1:30157041-30157060 Msa0018060:CDS 35.0%
AAAAAGAGTTTCACATGCTG+GGG - chr1_1:30157042-30157061 Msa0018060:CDS 35.0%
TTATTGTCTTTGTGGGTTTG+TGG - chr1_1:30157074-30157093 Msa0018060:intron 35.0%
AATGTTGTACACATGTTGGA+TGG + chr1_1:30157228-30157247 None:intergenic 35.0%
ACCCACAAAATGGTGAAAAA+GGG + chr1_1:30157376-30157395 None:intergenic 35.0%
AACCCACAAAATGGTGAAAA+AGG + chr1_1:30157377-30157396 None:intergenic 35.0%
! TTTTCACCATTTTGTGGGTT+TGG - chr1_1:30157377-30157396 Msa0018060:intron 35.0%
TTTCAAAAGGCTAAAGATGG+AGG - chr1_1:30158202-30158221 Msa0018060:intron 35.0%
CTTCGAAGATAGATTTGACT+TGG - chr1_1:30158376-30158395 Msa0018060:CDS 35.0%
CTTTATGTTCACTTGCGTAT+TGG - chr1_1:30158431-30158450 Msa0018060:CDS 35.0%
GTTTGTGCTGAATGGAATTA+TGG - chr1_1:30158461-30158480 Msa0018060:CDS 35.0%
AACAGACAATGAGCCATTTA+AGG - chr1_1:30158623-30158642 Msa0018060:CDS 35.0%
! AGAGAGTTTGTTTCAAACTC+AGG - chr1_1:30158810-30158829 Msa0018060:intron 35.0%
! GAGAGTTTGTTTCAAACTCA+GGG - chr1_1:30158811-30158830 Msa0018060:intron 35.0%
TGGTCCAATAATTATGTCTC+AGG - chr1_1:30158834-30158853 Msa0018060:intron 35.0%
GCAACGCTTCTTATTGTAAT+TGG + chr1_1:30158912-30158931 None:intergenic 35.0%
TGATAGATCGAGAATGAGTA+TGG - chr1_1:30159007-30159026 Msa0018060:intron 35.0%
TGGAAAGGCTTACACAAAAT+GGG - chr1_1:30159057-30159076 Msa0018060:CDS 35.0%
TGCTAAGGTAAACTTACAAC+GGG + chr1_1:30159154-30159173 None:intergenic 35.0%
CTGCTAAGGTAAACTTACAA+CGG + chr1_1:30159155-30159174 None:intergenic 35.0%
TGTGTTTAGTGTTAGAGAAG+AGG - chr1_1:30159267-30159286 Msa0018060:intron 35.0%
! GAGAAGAGGTACAAATTTGA+AGG - chr1_1:30159281-30159300 Msa0018060:CDS 35.0%
TTGTAGATTGACACTTGCAA+TGG - chr1_1:30159380-30159399 Msa0018060:intron 35.0%
! TTGGGTTTAAAGTTCTCGTT+GGG + chr1_1:30159428-30159447 None:intergenic 35.0%
! TTTGGGTTTAAAGTTCTCGT+TGG + chr1_1:30159429-30159448 None:intergenic 35.0%
! CAATTCTCAGTCCACATTTT+GGG + chr1_1:30159446-30159465 None:intergenic 35.0%
GCTAGATTCATACAAAATCG+TGG - chr1_1:30159638-30159657 Msa0018060:intron 35.0%
!! GAACTTAGAAGTATTCACAC+AGG + chr1_1:30159723-30159742 None:intergenic 35.0%
!! AATTTTGGTCGAACATCTAG+TGG - chr1_1:30159830-30159849 Msa0018060:CDS 35.0%
! CATAGCTTGTGGCAATAAAA+AGG + chr1_1:30159856-30159875 None:intergenic 35.0%
AGCATCATAATCATAGCTTG+TGG + chr1_1:30159867-30159886 None:intergenic 35.0%
GATGCTCCTATTGATGAATA+TGG - chr1_1:30159881-30159900 Msa0018060:CDS 35.0%
GACTTCCAAATGAACCAAAA+TGG - chr1_1:30159984-30160003 Msa0018060:intron 35.0%
!! TTTTTCAGATGGCTCCATTT+TGG + chr1_1:30160001-30160020 None:intergenic 35.0%
GCTTGGAAATAAAAACCTTG+AGG - chr1_1:30160084-30160103 Msa0018060:intron 35.0%
!! ATTTTGTGTCGTAGTTTGCA+AGG + chr1_1:30160244-30160263 None:intergenic 35.0%
ATGGACATAGCTTCCATAAA+AGG - chr1_1:30160470-30160489 Msa0018060:intron 35.0%
CAATCAAATGTAGTATCCAC+GGG + chr1_1:30160502-30160521 None:intergenic 35.0%
CCAATCAAATGTAGTATCCA+CGG + chr1_1:30160503-30160522 None:intergenic 35.0%
CATCATAGCAAATGCACTTT+GGG - chr1_1:30160567-30160586 Msa0018060:intron 35.0%
GCTGAATTTATGGTAAGAGT+AGG + chr1_1:30160793-30160812 None:intergenic 35.0%
ACTCTTACCATAAATTCAGC+AGG - chr1_1:30160793-30160812 Msa0018060:intron 35.0%
AACATGACCTGCTGAATTTA+TGG + chr1_1:30160803-30160822 None:intergenic 35.0%
!! GAAAGTGTTAACCTAAAGGT+CGG - chr1_1:30160987-30161006 Msa0018060:intron 35.0%
! TTCTTTACTTAGTGTTGCTG+TGG - chr1_1:30161022-30161041 Msa0018060:intron 35.0%
! TCTTTACTTAGTGTTGCTGT+GGG - chr1_1:30161023-30161042 Msa0018060:intron 35.0%
TCGAACGAGATAATACTAAC+CGG + chr1_1:30161053-30161072 None:intergenic 35.0%
!! CACTTTGAAACATGGAATGT+TGG - chr1_1:30161188-30161207 Msa0018060:intron 35.0%
!! CTTTGAAACATGGAATGTTG+GGG - chr1_1:30161190-30161209 Msa0018060:intron 35.0%
AACTTCCAGTTATGGTATGA+AGG + chr1_1:30161418-30161437 None:intergenic 35.0%
GTCATATGTAACATTGGCAA+AGG + chr1_1:30161532-30161551 None:intergenic 35.0%
CAGATGGTCATATGTAACAT+TGG + chr1_1:30161538-30161557 None:intergenic 35.0%
TTACCATGTGCTATATATGC+AGG + chr1_1:30161702-30161721 None:intergenic 35.0%
TGTGATGAATGTAATTACGC+TGG - chr1_1:30161723-30161742 Msa0018060:intron 35.0%
TGGATAGGTATCATATTCCT+CGG - chr1_1:30161882-30161901 Msa0018060:CDS 35.0%
TCACCAATGAAATTCCAGTA+GGG + chr1_1:30161964-30161983 None:intergenic 35.0%
TTCACCAATGAAATTCCAGT+AGG + chr1_1:30161965-30161984 None:intergenic 35.0%
CTTGAACTACCAGAAAAAGA+TGG + chr1_1:30162097-30162116 None:intergenic 35.0%
! CATTTCTGCATCCAATCTTT+TGG + chr1_1:30162126-30162145 None:intergenic 35.0%
! TGAGCACTATTGTTCCATTT+TGG - chr1_1:30162233-30162252 Msa0018060:five_prime_UTR 35.0%
CATGTAAAGTTGCTTGCAAA+TGG - chr1_1:30162289-30162308 Msa0018060:five_prime_UTR 35.0%
! TTAGCTCTTTAGCATTGTGG+AGG + chr1_1:30156627-30156646 None:intergenic 40.0%
!!! CGGCTTCTAGTTTTTGTTTG+CGG + chr1_1:30156862-30156881 None:intergenic 40.0%
GCAAAAAGAGTTTCACATGC+TGG - chr1_1:30157040-30157059 Msa0018060:CDS 40.0%
CACAAAGCTCTTGTGATTGA+TGG - chr1_1:30157122-30157141 Msa0018060:intron 40.0%
!! TCCCCTTTTTCACCATTTTG+TGG - chr1_1:30157371-30157390 Msa0018060:intron 40.0%
CCCACAAAATGGTGAAAAAG+GGG + chr1_1:30157375-30157394 None:intergenic 40.0%
!! CCCCTTTTTCACCATTTTGT+GGG - chr1_1:30157372-30157391 Msa0018060:intron 40.0%
GTGGCCAGACTTATTTCAAA+AGG - chr1_1:30158189-30158208 Msa0018060:CDS 40.0%
TTCGTTACATTTCCAGGAGA+AGG + chr1_1:30158271-30158290 None:intergenic 40.0%
TTCCATTCAGCACAAACGTA+GGG + chr1_1:30158458-30158477 None:intergenic 40.0%
ATTCCATTCAGCACAAACGT+AGG + chr1_1:30158459-30158478 None:intergenic 40.0%
TGGAACATACTTGAGCCAAA+CGG + chr1_1:30158589-30158608 None:intergenic 40.0%
! TTTGGCTCAAGTATGTTCCA+GGG - chr1_1:30158589-30158608 Msa0018060:intron 40.0%
! GACAATGAGCCATTTAAGGT+TGG - chr1_1:30158627-30158646 Msa0018060:CDS 40.0%
! AGTTTGTTTCAAACTCAGGG+TGG - chr1_1:30158814-30158833 Msa0018060:intron 40.0%
! CATTTTGTGTAAGCCTTTCC+AGG + chr1_1:30159058-30159077 None:intergenic 40.0%
CTGGAAAGGCTTACACAAAA+TGG - chr1_1:30159056-30159075 Msa0018060:CDS 40.0%
TCTAGATACTGGTGTACCTT+GGG - chr1_1:30159099-30159118 Msa0018060:CDS 40.0%
! CCAATTCTCAGTCCACATTT+TGG + chr1_1:30159447-30159466 None:intergenic 40.0%
! CCAAAATGTGGACTGAGAAT+TGG - chr1_1:30159444-30159463 Msa0018060:intron 40.0%
!! TATAGGTACACTGATTTCGG+TGG - chr1_1:30159572-30159591 Msa0018060:intron 40.0%
TCATAGACCAACTGAAGACT+TGG - chr1_1:30159604-30159623 Msa0018060:intron 40.0%
!!! TGGCTCCATTTTGGTTCATT+TGG + chr1_1:30159992-30160011 None:intergenic 40.0%
GAGTCATAGACTTTACCTCA+AGG + chr1_1:30160102-30160121 None:intergenic 40.0%
GCAACGGTTACATTTGGAAA+TGG - chr1_1:30160269-30160288 Msa0018060:intron 40.0%
GCAAATATGATCTACCACCT+TGG - chr1_1:30160291-30160310 Msa0018060:intron 40.0%
! TGTAGTTTTCAACACGGCAA+CGG - chr1_1:30160343-30160362 Msa0018060:CDS 40.0%
CCGTGGATACTACATTTGAT+TGG - chr1_1:30160500-30160519 Msa0018060:CDS 40.0%
!! CCAAAGTGCATTTGCTATGA+TGG + chr1_1:30160569-30160588 None:intergenic 40.0%
CCATCATAGCAAATGCACTT+TGG - chr1_1:30160566-30160585 Msa0018060:intron 40.0%
GCGATTCTTCAGATTATCTG+TGG - chr1_1:30160608-30160627 Msa0018060:intron 40.0%
ACGAATGTAGGAACTGTGTA+TGG - chr1_1:30160933-30160952 Msa0018060:intron 40.0%
AATGTAGGAACTGTGTATGG+AGG - chr1_1:30160936-30160955 Msa0018060:intron 40.0%
!! TCTTGTTATTGCCGACCTTT+AGG + chr1_1:30161001-30161020 None:intergenic 40.0%
!! TTGGTCTGCACTTTGAAACA+TGG - chr1_1:30161180-30161199 Msa0018060:intron 40.0%
TTAGGCCCAGTAACATTGAA+GGG - chr1_1:30161215-30161234 Msa0018060:intron 40.0%
CTAGACCCTTCAATGTTACT+GGG + chr1_1:30161223-30161242 None:intergenic 40.0%
TCTAGACCCTTCAATGTTAC+TGG + chr1_1:30161224-30161243 None:intergenic 40.0%
AACATTGAAGGGTCTAGATG+AGG - chr1_1:30161226-30161245 Msa0018060:intron 40.0%
ACATTGAAGGGTCTAGATGA+GGG - chr1_1:30161227-30161246 Msa0018060:intron 40.0%
! TTGGCAGAAATGGTCTTACA+AGG - chr1_1:30161265-30161284 Msa0018060:intron 40.0%
! TGTTGGATAGGTTGGACTAA+AGG - chr1_1:30161379-30161398 Msa0018060:intron 40.0%
! GTTGGATAGGTTGGACTAAA+GGG - chr1_1:30161380-30161399 Msa0018060:intron 40.0%
TTGAGCCTTCATACCATAAC+TGG - chr1_1:30161410-30161429 Msa0018060:intron 40.0%
AATGGAGGAACTTCCAGTTA+TGG + chr1_1:30161426-30161445 None:intergenic 40.0%
TGATCCTTGTGTCCAATCAA+TGG + chr1_1:30161444-30161463 None:intergenic 40.0%
TTGGACACAAGGATCATCAT+TGG - chr1_1:30161448-30161467 Msa0018060:intron 40.0%
ACAACCTTTGACATGGTACA+AGG - chr1_1:30161478-30161497 Msa0018060:intron 40.0%
CTTACCTTGTACCATGTCAA+AGG + chr1_1:30161485-30161504 None:intergenic 40.0%
GCACTAGATATGAGTAGCAT+GGG - chr1_1:30161630-30161649 Msa0018060:intron 40.0%
AGATATGAGTAGCATGGGAA+AGG - chr1_1:30161635-30161654 Msa0018060:intron 40.0%
GATATGAGTAGCATGGGAAA+GGG - chr1_1:30161636-30161655 Msa0018060:intron 40.0%
TGGATAAACGACCAAAGCAT+TGG - chr1_1:30161666-30161685 Msa0018060:intron 40.0%
! CCACAATTTGTCCTGCATTT+TGG + chr1_1:30161762-30161781 None:intergenic 40.0%
CCAAAATGCAGGACAAATTG+TGG - chr1_1:30161759-30161778 Msa0018060:CDS 40.0%
TCTTGGTTGTGCTTGAAGAA+TGG - chr1_1:30161930-30161949 Msa0018060:exon 40.0%
CTTGGTTGTGCTTGAAGAAT+GGG - chr1_1:30161931-30161950 Msa0018060:exon 40.0%
TTGGTTGTGCTTGAAGAATG+GGG - chr1_1:30161932-30161951 Msa0018060:exon 40.0%
TGACCCTACTGGAATTTCAT+TGG - chr1_1:30161958-30161977 Msa0018060:five_prime_UTR 40.0%
! ATCGATGCTCCATCTTTTTC+TGG - chr1_1:30162085-30162104 Msa0018060:five_prime_UTR 40.0%
! TTCACAAGCATTGCCCGTTA+AGG + chr1_1:30156655-30156674 None:intergenic 45.0%
AAAACGATGGGAAGAGAAGG+GGG + chr1_1:30156726-30156745 None:intergenic 45.0%
GAAAACGATGGGAAGAGAAG+GGG + chr1_1:30156727-30156746 None:intergenic 45.0%
GGAAAACGATGGGAAGAGAA+GGG + chr1_1:30156728-30156747 None:intergenic 45.0%
TGGAAAACGATGGGAAGAGA+AGG + chr1_1:30156729-30156748 None:intergenic 45.0%
! GTGAGGTGTGTGCTTTTGAT+GGG + chr1_1:30156798-30156817 None:intergenic 45.0%
!! TGTGCTTCTTGGATAGTGGA+TGG + chr1_1:30157174-30157193 None:intergenic 45.0%
! CACATGTTGGATGGAGGTAT+TGG + chr1_1:30157219-30157238 None:intergenic 45.0%
GTTGTACACATGTTGGATGG+AGG + chr1_1:30157225-30157244 None:intergenic 45.0%
GGATGACCAAACCCACAAAA+TGG + chr1_1:30157386-30157405 None:intergenic 45.0%
GGAACATACTTGAGCCAAAC+GGG + chr1_1:30158588-30158607 None:intergenic 45.0%
! GTTTGGCTCAAGTATGTTCC+AGG - chr1_1:30158588-30158607 Msa0018060:intron 45.0%
ATGAGTATGGACCTGTGGAA+TGG - chr1_1:30159020-30159039 Msa0018060:intron 45.0%
TGAGTATGGACCTGTGGAAT+GGG - chr1_1:30159021-30159040 Msa0018060:intron 45.0%
!! CACAAAATGGGCTGCTCAAA+TGG - chr1_1:30159069-30159088 Msa0018060:CDS 45.0%
ATGGCTGTAGGTCTAGATAC+TGG - chr1_1:30159088-30159107 Msa0018060:CDS 45.0%
GTCTAGATACTGGTGTACCT+TGG - chr1_1:30159098-30159117 Msa0018060:CDS 45.0%
GGTAAACTTACAACGGGATC+AGG + chr1_1:30159148-30159167 None:intergenic 45.0%
TGTGTCGTGTCAATCGTATC+AGG - chr1_1:30159193-30159212 Msa0018060:intron 45.0%
! ATGTGGACTGAGAATTGGTC+TGG - chr1_1:30159449-30159468 Msa0018060:intron 45.0%
GAGTATGCCAAGTCTTCAGT+TGG + chr1_1:30159614-30159633 None:intergenic 45.0%
! TGAGCCAGCTTTGATTTCTG+TGG - chr1_1:30160045-30160064 Msa0018060:intron 45.0%
GGATCCACAGAAATCAAAGC+TGG + chr1_1:30160052-30160071 None:intergenic 45.0%
TTTCCAAGCCATGTGACTGT+AGG + chr1_1:30160073-30160092 None:intergenic 45.0%
CGACACAAAATCTGCTGCAA+CGG - chr1_1:30160253-30160272 Msa0018060:intron 45.0%
TCTGCTGCAACGGTTACATT+TGG - chr1_1:30160263-30160282 Msa0018060:intron 45.0%
! TATGATGGAATCGTCGTCAC+TGG + chr1_1:30160554-30160573 None:intergenic 45.0%
AGGAACTGTGTATGGAGGAT+TGG - chr1_1:30160941-30160960 Msa0018060:intron 45.0%
! TTGCTCTGGTCGCACATTTT+AGG - chr1_1:30161089-30161108 Msa0018060:intron 45.0%
CAAAGTGCAGACCAACATTC+TGG + chr1_1:30161175-30161194 None:intergenic 45.0%
! ACATGGAATGTTGGGGTGTT+AGG - chr1_1:30161197-30161216 Msa0018060:intron 45.0%
GTTAGGCCCAGTAACATTGA+AGG - chr1_1:30161214-30161233 Msa0018060:intron 45.0%
CATTGAAGGGTCTAGATGAG+GGG - chr1_1:30161228-30161247 Msa0018060:intron 45.0%
GAGACTTGTCTTGGCAGAAA+TGG - chr1_1:30161255-30161274 Msa0018060:intron 45.0%
CTGGAAGTTCCTCCATTGAT+TGG - chr1_1:30161429-30161448 Msa0018060:intron 45.0%
! TCCTCCATTGATTGGACACA+AGG - chr1_1:30161437-30161456 Msa0018060:intron 45.0%
TCCTTGTGTCCAATCAATGG+AGG + chr1_1:30161441-30161460 None:intergenic 45.0%
CTACTCATATCTAGTGCCAC+TGG + chr1_1:30161627-30161646 None:intergenic 45.0%
GGCACTAGATATGAGTAGCA+TGG - chr1_1:30161629-30161648 Msa0018060:intron 45.0%
GCATGGGAAAGGGTGAAATA+TGG - chr1_1:30161646-30161665 Msa0018060:intron 45.0%
!! ACCAAAGCATTGGTCGTCAT+TGG - chr1_1:30161676-30161695 Msa0018060:intron 45.0%
TGGCCTGCATATATAGCACA+TGG - chr1_1:30161696-30161715 Msa0018060:intron 45.0%
GTGGAGAACCAACACAGAAA+TGG - chr1_1:30161778-30161797 Msa0018060:CDS 45.0%
GGTATCATATTCCTCGGTCA+TGG - chr1_1:30161888-30161907 Msa0018060:CDS 45.0%
!!! AAAATTTTAGATTTTAAAAT+AGG + chr1_1:30157407-30157426 None:intergenic 5.0%
!!! ATTTTAAAATCTAAAATTTT+TGG - chr1_1:30157407-30157426 Msa0018060:intron 5.0%
!!! ATTTTAGATAAAATATTTTA+TGG - chr1_1:30157583-30157602 Msa0018060:intron 5.0%
!!! TATAAATTTTTTTATTTTGA+TGG - chr1_1:30157675-30157694 Msa0018060:CDS 5.0%
!! TAATAAAAAGTTTATATAAA+AGG - chr1_1:30157876-30157895 Msa0018060:intron 5.0%
!!! CTTATTATTTTTTTTTTTTA+GGG + chr1_1:30158938-30158957 None:intergenic 5.0%
!!! TCTTATTATTTTTTTTTTTT+AGG + chr1_1:30158939-30158958 None:intergenic 5.0%
!!! TTAATTTAGAATATATAAAT+TGG + chr1_1:30160900-30160919 None:intergenic 5.0%
!!! TAATTTTTTTTTTAATCTTT+TGG - chr1_1:30161862-30161881 Msa0018060:CDS 5.0%
AAACGATGGGAAGAGAAGGG+GGG + chr1_1:30156725-30156744 None:intergenic 50.0%
!! TGCTTTTGATGGGTGAGCTG+AGG + chr1_1:30156788-30156807 None:intergenic 50.0%
! GGTGAGGTGTGTGCTTTTGA+TGG + chr1_1:30156799-30156818 None:intergenic 50.0%
GAGTGGAATGAGTGTACCTC+GGG + chr1_1:30157197-30157216 None:intergenic 50.0%
GGAGTGGAATGAGTGTACCT+CGG + chr1_1:30157198-30157217 None:intergenic 50.0%
!! GTTGGATGGAGGTATTGGAG+TGG + chr1_1:30157214-30157233 None:intergenic 50.0%
AATGGACATGAGCCTTCTCC+TGG - chr1_1:30158256-30158275 Msa0018060:intron 50.0%
GTCAAGCTAGCACAACAAGC+TGG - chr1_1:30158407-30158426 Msa0018060:CDS 50.0%
GTCCCTACGTTTGTGCTGAA+TGG - chr1_1:30158453-30158472 Msa0018060:CDS 50.0%
TGTGCAGAGGATTTCCCGTT+TGG - chr1_1:30158571-30158590 Msa0018060:intron 50.0%
GCTCAAGTATGTTCCAGGGA+TGG - chr1_1:30158593-30158612 Msa0018060:CDS 50.0%
!! TCTGTTCTGAAAGCCATCCC+TGG + chr1_1:30158609-30158628 None:intergenic 50.0%
CGAGAATGAGTATGGACCTG+TGG - chr1_1:30159015-30159034 Msa0018060:intron 50.0%
GGACCTGTGGAATGGGAAAT+TGG - chr1_1:30159028-30159047 Msa0018060:intron 50.0%
GCACCAATTTCCCATTCCAC+AGG + chr1_1:30159034-30159053 None:intergenic 50.0%
! GAATGGGAAATTGGTGCTCC+TGG - chr1_1:30159037-30159056 Msa0018060:intron 50.0%
! GGAAATTGGTGCTCCTGGAA+AGG - chr1_1:30159042-30159061 Msa0018060:intron 50.0%
TCTTGCTTGCACATGTCCCA+AGG + chr1_1:30159118-30159137 None:intergenic 50.0%
CGAACACGCTGATACTGCTA+AGG + chr1_1:30159169-30159188 None:intergenic 50.0%
CTGTGGATCCTACAGTCACA+TGG - chr1_1:30160062-30160081 Msa0018060:intron 50.0%
GATCCTACAGTCACATGGCT+TGG - chr1_1:30160067-30160086 Msa0018060:intron 50.0%
AAGGAATGCAGCACAGACAC+TGG + chr1_1:30160225-30160244 None:intergenic 50.0%
AGAATGCTGACAGACCAAGG+TGG + chr1_1:30160308-30160327 None:intergenic 50.0%
GGAAGAATGCTGACAGACCA+AGG + chr1_1:30160311-30160330 None:intergenic 50.0%
! CCACGGGAGTCATCCTTTTA+TGG + chr1_1:30160486-30160505 None:intergenic 50.0%
CCATAAAAGGATGACTCCCG+TGG - chr1_1:30160483-30160502 Msa0018060:CDS 50.0%
! TAGTGTTGCTGTGGGTCTTC+CGG - chr1_1:30161031-30161050 Msa0018060:intron 50.0%
TGCGACCAGAGCAACCAAAA+GGG + chr1_1:30161083-30161102 None:intergenic 50.0%
AGGGGACAAGAGACTTGTCT+TGG - chr1_1:30161246-30161265 Msa0018060:intron 50.0%
GCCAATGACGACCAATGCTT+TGG + chr1_1:30161680-30161699 None:intergenic 50.0%
GGTCATGGTTGAGTCCAAGT+GGG - chr1_1:30161903-30161922 Msa0018060:CDS 50.0%
ACAACCAAGACGTTCCCACT+TGG + chr1_1:30161920-30161939 None:intergenic 50.0%
GTTGTGCTTGAAGAATGGGG+AGG - chr1_1:30161935-30161954 Msa0018060:five_prime_UTR 50.0%
GATGGGTGAGCTGAGGTGAA+GGG + chr1_1:30156781-30156800 None:intergenic 55.0%
! TGATGGGTGAGCTGAGGTGA+AGG + chr1_1:30156782-30156801 None:intergenic 55.0%
CGGGTGTGCTTCTTGGATAG+TGG + chr1_1:30157178-30157197 None:intergenic 55.0%
! CTATCCAAGAAGCACACCCG+AGG - chr1_1:30157178-30157197 Msa0018060:CDS 55.0%
TGTACCTCGGGTGTGCTTCT+TGG + chr1_1:30157185-30157204 None:intergenic 55.0%
TGGGCTGCTCAAATGGCTGT+AGG - chr1_1:30159076-30159095 Msa0018060:CDS 55.0%
! GGACTGAGAATTGGTCTGGC+TGG - chr1_1:30159453-30159472 Msa0018060:intron 55.0%
GGAATCGTCGTCACTGGAGT+AGG + chr1_1:30160548-30160567 None:intergenic 55.0%
! CGTTCGATGCACACCCCTTT+TGG - chr1_1:30161066-30161085 Msa0018060:intron 55.0%
!! CACACCCCTTTTGGTTGCTC+TGG - chr1_1:30161075-30161094 Msa0018060:intron 55.0%
GCGACCAGAGCAACCAAAAG+GGG + chr1_1:30161082-30161101 None:intergenic 55.0%
GTGCGACCAGAGCAACCAAA+AGG + chr1_1:30161084-30161103 None:intergenic 55.0%
CTTGGACTCAACCATGACCG+AGG + chr1_1:30161902-30161921 None:intergenic 55.0%
CGGTCATGGTTGAGTCCAAG+TGG - chr1_1:30161902-30161921 Msa0018060:CDS 55.0%
GAGTCCAAGTGGGAACGTCT+TGG - chr1_1:30161913-30161932 Msa0018060:CDS 55.0%
TCGTCGTCACTGGAGTAGGC+AGG + chr1_1:30160544-30160563 None:intergenic 60.0%
GAATGGGGAGGTGACCCTAC+TGG - chr1_1:30161947-30161966 Msa0018060:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 30156613 30162341 30156613 ID=Msa0018060;Name=Msa0018060
chr1_1 mRNA 30156613 30162341 30156613 ID=Msa0018060-mRNA-1;Parent=Msa0018060;Name=Msa0018060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=407|1|1|1|1|1|18|347|730
chr1_1 exon 30156613 30157065 30156613 ID=Msa0018060-mRNA-1:exon:10096;Parent=Msa0018060-mRNA-1
chr1_1 exon 30157155 30157360 30157155 ID=Msa0018060-mRNA-1:exon:10095;Parent=Msa0018060-mRNA-1
chr1_1 exon 30157455 30157565 30157455 ID=Msa0018060-mRNA-1:exon:10094;Parent=Msa0018060-mRNA-1
chr1_1 exon 30157668 30157778 30157668 ID=Msa0018060-mRNA-1:exon:10093;Parent=Msa0018060-mRNA-1
chr1_1 exon 30157902 30158011 30157902 ID=Msa0018060-mRNA-1:exon:10092;Parent=Msa0018060-mRNA-1
chr1_1 exon 30158101 30158210 30158101 ID=Msa0018060-mRNA-1:exon:10091;Parent=Msa0018060-mRNA-1
chr1_1 exon 30158313 30158488 30158313 ID=Msa0018060-mRNA-1:exon:10090;Parent=Msa0018060-mRNA-1
chr1_1 exon 30158590 30158754 30158590 ID=Msa0018060-mRNA-1:exon:10089;Parent=Msa0018060-mRNA-1
chr1_1 exon 30158849 30158970 30158849 ID=Msa0018060-mRNA-1:exon:10088;Parent=Msa0018060-mRNA-1
chr1_1 exon 30159052 30159139 30159052 ID=Msa0018060-mRNA-1:exon:10087;Parent=Msa0018060-mRNA-1
chr1_1 exon 30159272 30159377 30159272 ID=Msa0018060-mRNA-1:exon:10086;Parent=Msa0018060-mRNA-1
chr1_1 exon 30159480 30159568 30159480 ID=Msa0018060-mRNA-1:exon:10085;Parent=Msa0018060-mRNA-1
chr1_1 exon 30159798 30159941 30159798 ID=Msa0018060-mRNA-1:exon:10084;Parent=Msa0018060-mRNA-1
chr1_1 exon 30160099 30160191 30160099 ID=Msa0018060-mRNA-1:exon:10083;Parent=Msa0018060-mRNA-1
chr1_1 exon 30160310 30160376 30160310 ID=Msa0018060-mRNA-1:exon:10082;Parent=Msa0018060-mRNA-1
chr1_1 exon 30160471 30160583 30160471 ID=Msa0018060-mRNA-1:exon:10081;Parent=Msa0018060-mRNA-1
chr1_1 exon 30160672 30160767 30160672 ID=Msa0018060-mRNA-1:exon:10080;Parent=Msa0018060-mRNA-1
chr1_1 exon 30161755 30162341 30161755 ID=Msa0018060-mRNA-1:exon:10079;Parent=Msa0018060-mRNA-1
chr1_1 five_prime_UTR 30161935 30162341 30161935 ID=Msa0018060-mRNA-1:five_prime_utr;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30161755 30161934 30161755 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30160672 30160767 30160672 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30160471 30160583 30160471 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30160310 30160376 30160310 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30160099 30160191 30160099 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30159798 30159941 30159798 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30159480 30159568 30159480 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30159272 30159377 30159272 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30159052 30159139 30159052 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30158849 30158970 30158849 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30158590 30158754 30158590 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30158313 30158488 30158313 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30158101 30158210 30158101 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30157902 30158011 30157902 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30157668 30157778 30157668 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30157455 30157565 30157455 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30157155 30157360 30157155 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 CDS 30156960 30157065 30156960 ID=Msa0018060-mRNA-1:cds;Parent=Msa0018060-mRNA-1
chr1_1 three_prime_UTR 30156613 30156959 30156613 ID=Msa0018060-mRNA-1:three_prime_utr;Parent=Msa0018060-mRNA-1
Gene Sequence

>Msa0018060

ATGATGGAGAGTTTAACAATGCAAAAAGAGTTTCACATGCTGGGGTTGATTTTATTATTGTCTTTGTGGGTTTGTGGTGTTACTGCTTCAGTGAGTTATGATCACAAAGCTCTTGTGATTGATGGACAAAGAAGAATTTTGATATCTGGCTCCATCCACTATCCAAGAAGCACACCCGAGATGTGGCCAGACTTATTTCAAAAGGCTAAAGATGGAGGCCTTGATGTTATTCAAACCTATGTATTTTGGAATGGACATGAGCCTTCTCCTGGAAATTATTACTTCGAAGATAGATTTGACTTGGTAAAGTTTGTCAAGCTAGCACAACAAGCTGGTCTTTATGTTCACTTGCGTATTGGTCCCTACGTTTGTGCTGAATGGAATTATGGAGGATTTCCCGTTTGGCTCAAGTATGTTCCAGGGATGGCTTTCAGAACAGACAATGAGCCATTTAAGGCTGCTATGCAAAAATTCACGACCAAAATTGTGAACATGATGAAAGCAGAGAGTTTGTTTCAAACTCAGGGTGGTCCAATAATTATGTCTCAGATCGAGAATGAGTATGGACCTGTGGAATGGGAAATTGGTGCTCCTGGAAAGGCTTACACAAAATGGGCTGCTCAAATGGCTGTAGGTCTAGATACTGGTGTACCTTGGGACATGTGCAAGCAAGAAGACGCACCTGATCCCGTTATTGACACTTGCAATGGATATTACTGTGAAAACTTCACTCCCAACGAGAACTTTAAACCCAAAATGTGGACTGAGAATTGGTCTGGCTGGTACACTGATTTCGGTGGTGCTCTATCTCATAGACCAACTGAAGACTTGGCATACTCAGTTGCTAGATTCATACAAAATCGTGGCTCCTTTGTTAACTACTATATGTATCATGGAGGAACTAATTTTGGTCGAACATCTAGTGGCCTTTTTATTGCCACAAGCTATGATTATGATGCTCCTATTGATGAATATGGACTTCCAAATGAACCAAAATGGAGCCATCTGAAAAATTTACATAAAGCAATAAAACAATGTGAGCCAGCTTTGATTTCTGTGGATCCTACAGTCACATGGCTTGGAAATAAAAACCTTGAGGCGCATGTGTACTACGTAAGTACCAGTGTCTGTGCTGCATTCCTTGCAAACTACGACACAAAATCTGCTGCAACGGTTACATTTGGAAATGGCAAATATGATCTACCACCTTGGTCTGTCAGCATTCTTCCTGATTGCAAAACTGTAGTTTTCAACACGGCAACGGTTAATGGACATAGCTTCCATAAAAGGATGACTCCCGTGGATACTACATTTGATTGGCAGTCATACAGTGAAGAGCCTGCCTACTCCAGTGACGACGATTCCATCATAGCAAATGCACTTTGGGAGCAAATCAACGTTACTCGCGATTCTTCAGATTATCTGTGGTATTTGACAGATGTAAACATTAGTCCTAATGAAAGTTTTGTAAAGAATGGTCAATCTCCTACTCTTACCATAAATTCAGCAGGTCATGTTCTACATGTTTTTGTTAATGGTCAACTTTCAGGAACTGTGTATGGAGGATTGGATAATCCTAAATTAACATTTAGTGAAAGTGTTAACCTAAAGGTCGGCAATAACAAGATTTCTTTACTTAGTGTTGCTGTGGGTCTTCCGAATGTTGGTCTGCACTTTGAAACATGGAATGTTGGGGTGTTAGGCCCAGTAACATTGAAGGGTCTAGATGAGGGGACAAGAGACTTGTCTTGGCAGAAATGGTCTTACAAGGTTGGACTAAAGGGTGAATCTTTGAGCCTTCATACCATAACTGGAAGTTCCTCCATTGATTGGACACAAGGATCATCATTGGTTAAAAAACAACCTTTGACATGGTACAAGACAACCTTTGACGCGCCGAGTGGCAGCGATCCAGTGGCACTAGATATGAGTAGCATGGGAAAGGGTGAAATATGGATAAACGACCAAAGCATTGGTCGTCATTGGCCTGCATATATAGCACATGGTAATTGTGATGAATGTAATTACGCTGGAACTTTTACTAATCCAAAATGCAGGACAAATTGTGGAGAACCAACACAGAAATGGTATCATATTCCTCGGTCATGGTTGAGTCCAAGTGGGAACGTCTTGGTTGTGCTTGAAGAATGGGGAGGTGACCCTACTGGAATTTCATTGGTGAAAAGAACATGA
Protein sequence

>Msa0018060

MMESLTMQKEFHMLGLILLLSLWVCGVTASVSYDHKALVIDGQRRILISGSIHYPRSTPEMWPDLFQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRFDLVKFVKLAQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGMAFRTDNEPFKAAMQKFTTKIVNMMKAESLFQTQGGPIIMSQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWDMCKQEDAPDPVIDTCNGYYCENFTPNENFKPKMWTENWSGWYTDFGGALSHRPTEDLAYSVARFIQNRGSFVNYYMYHGGTNFGRTSSGLFIATSYDYDAPIDEYGLPNEPKWSHLKNLHKAIKQCEPALISVDPTVTWLGNKNLEAHVYYVSTSVCAAFLANYDTKSAATVTFGNGKYDLPPWSVSILPDCKTVVFNTATVNGHSFHKRMTPVDTTFDWQSYSEEPAYSSDDDSIIANALWEQINVTRDSSDYLWYLTDVNISPNESFVKNGQSPTLTINSAGHVLHVFVNGQLSGTVYGGLDNPKLTFSESVNLKVGNNKISLLSVAVGLPNVGLHFETWNVGVLGPVTLKGLDEGTRDLSWQKWSYKVGLKGESLSLHTITGSSSIDWTQGSSLVKKQPLTWYKTTFDAPSGSDPVALDMSSMGKGEIWINDQSIGRHWPAYIAHGNCDECNYAGTFTNPKCRTNCGEPTQKWYHIPRSWLSPSGNVLVVLEEWGGDPTGISLVKRT*