Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804360 | XP_003612971.3 | 95.840 | 673 | 28 | 0 | 1 | 673 | 1 | 673 | 0.0 | 1336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804360 | sp|Q8RJP2|RHIE_DICD3 | 25.133 | 565 | 324 | 23 | 116 | 667 | 99 | 577 | 1.98e-30 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804360 | A0A396HNJ7 | 95.840 | 673 | 28 | 0 | 1 | 673 | 1 | 673 | 0.0 | 1336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018060 | Msa0804360 | 0.830877 | 2.292717e-55 | -8.615850e-47 |
| Msa0052380 | Msa0804360 | 0.827534 | 1.483583e-54 | -8.615850e-47 |
| Msa0097390 | Msa0804360 | 0.822807 | 1.944429e-53 | -8.615850e-47 |
| Msa0618050 | Msa0804360 | 0.842977 | 1.859819e-58 | -8.615850e-47 |
| Msa0704520 | Msa0804360 | 0.809158 | 2.172617e-50 | -8.615850e-47 |
| Msa0710160 | Msa0804360 | 0.870584 | 1.306368e-66 | -8.615850e-47 |
| Msa0720910 | Msa0804360 | 0.819467 | 1.143616e-52 | -8.615850e-47 |
| Msa0761430 | Msa0804360 | 0.869945 | 2.116070e-66 | -8.615850e-47 |
| Msa0804360 | Msa0842030 | 0.984835 | 9.918664e-162 | -8.615850e-47 |
| Msa0804360 | Msa1199270 | 0.803117 | 4.063123e-49 | -8.615850e-47 |
| Msa0804360 | Msa1290460 | 0.814553 | 1.452933e-51 | -8.615850e-47 |
| Msa0804360 | Msa1418990 | 0.820281 | 7.452552e-53 | -8.615850e-47 |
| Msa0333070 | Msa0804360 | 0.801648 | 8.155635e-49 | -8.615850e-47 |
| Msa0485970 | Msa0804360 | 0.827524 | 1.492145e-54 | -8.615850e-47 |
| Msa0564950 | Msa0804360 | 0.850134 | 2.066591e-60 | -8.615850e-47 |
| Msa0580580 | Msa0804360 | 0.846115 | 2.660602e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804360 | MtrunA17_Chr5g0411781 | 95.840 | 673 | 28 | 0 | 1 | 673 | 1 | 673 | 0.0 | 1336 |
| Msa0804360 | MtrunA17_Chr8g0367141 | 62.463 | 682 | 240 | 6 | 1 | 667 | 16 | 696 | 0.0 | 878 |
| Msa0804360 | MtrunA17_Chr8g0367111 | 61.594 | 690 | 242 | 8 | 1 | 670 | 2 | 688 | 0.0 | 862 |
| Msa0804360 | MtrunA17_Chr8g0367101 | 62.573 | 684 | 239 | 7 | 1 | 669 | 1 | 682 | 0.0 | 857 |
| Msa0804360 | MtrunA17_Chr5g0427851 | 52.987 | 636 | 278 | 8 | 52 | 667 | 9 | 643 | 0.0 | 674 |
| Msa0804360 | MtrunA17_Chr3g0141191 | 53.492 | 630 | 278 | 7 | 52 | 669 | 25 | 651 | 0.0 | 669 |
| Msa0804360 | MtrunA17_Chr3g0141181 | 51.030 | 631 | 292 | 8 | 56 | 672 | 13 | 640 | 0.0 | 657 |
| Msa0804360 | MtrunA17_Chr3g0141171 | 51.712 | 555 | 247 | 6 | 58 | 592 | 29 | 582 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804360 | AT2G22620.1 | 54.675 | 631 | 273 | 6 | 48 | 670 | 52 | 677 | 0.0 | 707 |
| Msa0804360 | AT2G22620.3 | 54.675 | 631 | 273 | 6 | 48 | 670 | 52 | 677 | 0.0 | 707 |
| Msa0804360 | AT1G09890.4 | 53.045 | 624 | 277 | 9 | 57 | 668 | 14 | 633 | 0.0 | 662 |
| Msa0804360 | AT1G09890.1 | 52.979 | 621 | 276 | 9 | 60 | 668 | 1 | 617 | 0.0 | 658 |
| Msa0804360 | AT1G09890.5 | 52.885 | 624 | 273 | 10 | 57 | 668 | 14 | 628 | 0.0 | 652 |
| Msa0804360 | AT1G09890.3 | 51.080 | 648 | 277 | 10 | 57 | 668 | 14 | 657 | 0.0 | 649 |
| Msa0804360 | AT1G09910.1 | 49.681 | 626 | 301 | 7 | 54 | 669 | 54 | 675 | 0.0 | 641 |
| Msa0804360 | AT1G09910.3 | 49.681 | 626 | 301 | 7 | 54 | 669 | 11 | 632 | 0.0 | 640 |
| Msa0804360 | AT1G09910.2 | 49.681 | 626 | 301 | 7 | 54 | 669 | 11 | 632 | 0.0 | 640 |
| Msa0804360 | AT4G38030.1 | 48.851 | 653 | 303 | 12 | 29 | 668 | 31 | 665 | 0.0 | 637 |
| Msa0804360 | AT4G37950.2 | 51.406 | 640 | 286 | 10 | 44 | 668 | 47 | 676 | 0.0 | 636 |
| Msa0804360 | AT4G37950.1 | 51.406 | 640 | 286 | 10 | 44 | 668 | 47 | 676 | 0.0 | 636 |
| Msa0804360 | AT1G09880.3 | 47.626 | 674 | 325 | 10 | 14 | 669 | 41 | 704 | 0.0 | 635 |
| Msa0804360 | AT1G09880.2 | 47.626 | 674 | 325 | 10 | 14 | 669 | 27 | 690 | 0.0 | 635 |
| Msa0804360 | AT1G09880.4 | 48.402 | 657 | 316 | 9 | 31 | 669 | 7 | 658 | 0.0 | 634 |
| Msa0804360 | AT1G09880.1 | 49.682 | 628 | 294 | 8 | 60 | 669 | 1 | 624 | 0.0 | 629 |
| Msa0804360 | AT4G24430.1 | 51.014 | 641 | 291 | 11 | 45 | 667 | 4 | 639 | 0.0 | 622 |
| Msa0804360 | AT2G22620.4 | 55.882 | 510 | 214 | 4 | 48 | 550 | 52 | 557 | 0.0 | 600 |
| Msa0804360 | AT2G22620.2 | 57.873 | 489 | 200 | 4 | 185 | 670 | 112 | 597 | 0.0 | 585 |
| Msa0804360 | AT1G09890.2 | 51.509 | 530 | 219 | 8 | 57 | 551 | 14 | 540 | 0.0 | 538 |
| Msa0804360 | AT4G24430.2 | 51.908 | 524 | 240 | 8 | 153 | 667 | 1 | 521 | 0.0 | 536 |
| Msa0804360 | AT2G22620.5 | 52.791 | 430 | 190 | 5 | 48 | 470 | 52 | 475 | 2.96e-156 | 459 |
| Msa0804360 | AT1G65210.1 | 54.545 | 187 | 82 | 3 | 483 | 668 | 62 | 246 | 2.16e-60 | 203 |
Find 161 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCCAACTGTTTGGGAAAT+TGG | 0.140397 | 5_3:+20073265 | Msa0804360:CDS |
| ATTCACAGGGCTATCAATTT+TGG | 0.141260 | 5_3:+20072786 | Msa0804360:intron |
| AATCAAGATTTGACTCATTT+TGG | 0.163949 | 5_3:+20074375 | Msa0804360:CDS |
| TTACCTGGTTTAATTGTAAT+TGG | 0.186445 | 5_3:-20072917 | None:intergenic |
| CACCTTTGGTCTATGTTTAT+AGG | 0.189602 | 5_3:-20071176 | None:intergenic |
| CCTAGTGTTCATTTGGTAAA+AGG | 0.192340 | 5_3:+20074329 | Msa0804360:CDS |
| TTTGATTGAATAAAATTATA+AGG | 0.246769 | 5_3:-20072450 | None:intergenic |
| CAAACAGTTGGGCCATTTCT+TGG | 0.250334 | 5_3:-20073256 | None:intergenic |
| CCTTTAAATTGTGGATTAGA+TGG | 0.252359 | 5_3:-20071680 | None:intergenic |
| AACTTGTTTGCATGGGTTCC+TGG | 0.258856 | 5_3:+20072866 | Msa0804360:CDS |
| ACCTTTGGTCTATGTTTATA+GGG | 0.259445 | 5_3:-20071175 | None:intergenic |
| AACCAATACAATCAAGTTAA+TGG | 0.265535 | 5_3:+20071887 | Msa0804360:CDS |
| TCTTTGCCTAATATCTGATA+TGG | 0.276974 | 5_3:-20071585 | None:intergenic |
| TCCCTTACTTTGGCAAATCC+TGG | 0.281064 | 5_3:+20070712 | Msa0804360:CDS |
| TTATAACAAAGTTTCCATTT+TGG | 0.284242 | 5_3:-20072820 | None:intergenic |
| AGAAGGAGAGACTTATAAAA+AGG | 0.289826 | 5_3:+20072222 | Msa0804360:CDS |
| AAGGGCATGGAGTTCTTCTA+TGG | 0.291408 | 5_3:+20071139 | Msa0804360:CDS |
| CCATCTAATCCACAATTTAA+AGG | 0.292305 | 5_3:+20071680 | Msa0804360:CDS |
| AAGTCTCTCCTTCTTGGAAT+TGG | 0.315514 | 5_3:-20072213 | None:intergenic |
| CAAGAAATGGCCCAACTGTT+TGG | 0.318768 | 5_3:+20073257 | Msa0804360:CDS |
| GAATGAGATATGATCTAAAT+AGG | 0.319866 | 5_3:-20068733 | None:intergenic |
| ATAGTGAGAAAAGGCGATTC+TGG | 0.321658 | 5_3:+20071311 | Msa0804360:CDS |
| GGACTTGTAAATGTCCGGTT+AGG | 0.325730 | 5_3:-20072503 | None:intergenic |
| ATTTAGATCATATCTCATTC+AGG | 0.326808 | 5_3:+20068736 | Msa0804360:CDS |
| CTATTAAAGTTGATCAAATA+AGG | 0.328562 | 5_3:+20071378 | Msa0804360:CDS |
| GTGGTTGCTTGAAATTTATT+AGG | 0.329354 | 5_3:-20073785 | None:intergenic |
| TGCATGCAGCTTCAACTATA+TGG | 0.332495 | 5_3:+20071562 | Msa0804360:intron |
| AGTTAGTTACCTGGCTTCCT+TGG | 0.333504 | 5_3:-20071414 | None:intergenic |
| CCCTTACTTTGGCAAATCCT+GGG | 0.334655 | 5_3:+20070713 | Msa0804360:CDS |
| ATGGAATCCATGGATTATAT+TGG | 0.336026 | 5_3:+20074288 | Msa0804360:CDS |
| TTAATAGCAGGGAATCCTTT+TGG | 0.336570 | 5_3:-20071362 | None:intergenic |
| GTCTTAGGAATATCATATTC+TGG | 0.344765 | 5_3:+20070742 | Msa0804360:CDS |
| AAGATCAATTTAAATCTCTA+TGG | 0.348047 | 5_3:+20072287 | Msa0804360:CDS |
| ATCCATTAACTTGATTGTAT+TGG | 0.349422 | 5_3:-20071889 | None:intergenic |
| GTTAGGGTTCCACGTTGATT+AGG | 0.350575 | 5_3:-20072486 | None:intergenic |
| TACATTGGTCTAGCTTGGCC+TGG | 0.352021 | 5_3:+20072655 | Msa0804360:CDS |
| TGGACTAGAGCAGACCAAAA+TGG | 0.352907 | 5_3:+20072806 | Msa0804360:CDS |
| TACCTGCACTTCAGCATTAG+AGG | 0.353948 | 5_3:-20073879 | None:intergenic |
| GCATGGGTTCCTGGCTATAT+TGG | 0.358022 | 5_3:+20072875 | Msa0804360:CDS |
| TATGATAGGTTTAGGCAATA+TGG | 0.358897 | 5_3:+20073570 | Msa0804360:intron |
| TTGCAACTTTGTTTCACGTT+TGG | 0.371024 | 5_3:+20068708 | Msa0804360:CDS |
| ATGGAAAATGTACTTGAATC+TGG | 0.376558 | 5_3:+20070766 | Msa0804360:CDS |
| AAGAAATGGCCCAACTGTTT+GGG | 0.377978 | 5_3:+20073258 | Msa0804360:CDS |
| GGTTTAGGCAATATGGTCTA+TGG | 0.378350 | 5_3:+20073577 | Msa0804360:intron |
| GGAAATGAAGATGATGATAG+AGG | 0.381623 | 5_3:+20070787 | Msa0804360:CDS |
| CTAGCTTGGCCTGGGGATGC+AGG | 0.388413 | 5_3:+20072664 | Msa0804360:CDS |
| TGCCATGATCCTGCATCCCC+AGG | 0.390903 | 5_3:-20072673 | None:intergenic |
| GTGACTGGAGATTGAGCATT+AGG | 0.391971 | 5_3:-20070296 | None:intergenic |
| CTTGTTGTGGTGGTACATAA+TGG | 0.394702 | 5_3:+20068683 | Msa0804360:CDS |
| CCCCAGGATTTGCCAAAGTA+AGG | 0.394846 | 5_3:-20070714 | None:intergenic |
| TACGAGTGAATTCAAGTTGA+TGG | 0.396239 | 5_3:-20073224 | None:intergenic |
| ATGAACACTAGGTACTTCTA+TGG | 0.404001 | 5_3:-20074318 | None:intergenic |
| ACATTGGTCTAGCTTGGCCT+GGG | 0.407469 | 5_3:+20072656 | Msa0804360:CDS |
| AGAAGTACCTAGTGTTCATT+TGG | 0.408895 | 5_3:+20074322 | Msa0804360:CDS |
| GTTAGTTACCTGGCTTCCTT+GGG | 0.409083 | 5_3:-20071413 | None:intergenic |
| AACTTACAGAGAGGCAAGTT+GGG | 0.416244 | 5_3:-20072018 | None:intergenic |
| AATTCTCCAGCTGAGCGATC+TGG | 0.416473 | 5_3:-20073292 | None:intergenic |
| TGTGTTAAGAGAACAGCTTC+AGG | 0.421768 | 5_3:-20071656 | None:intergenic |
| GGTTTCAACTTTGTAGTTGA+AGG | 0.426228 | 5_3:-20074434 | None:intergenic |
| GGTTTAGAGACTAACTGGTC+TGG | 0.426955 | 5_3:-20073370 | None:intergenic |
| ATATGGCCATATCAGATATT+AGG | 0.428625 | 5_3:+20071579 | Msa0804360:CDS |
| GTATATAATCCTCCAAGAAA+TGG | 0.429167 | 5_3:+20073244 | Msa0804360:CDS |
| GTTACCTCTCCTTTAAATTG+TGG | 0.429246 | 5_3:-20071689 | None:intergenic |
| GATGTGAGATCTTGCTTAAC+GGG | 0.429375 | 5_3:-20071986 | None:intergenic |
| GAATTCAAGTAAACAAAGAT+AGG | 0.433996 | 5_3:-20072253 | None:intergenic |
| TATTCTCTTTGTAGTGAAGT+AGG | 0.440880 | 5_3:-20074240 | None:intergenic |
| AATCAACGTGGAACCCTAAC+CGG | 0.443227 | 5_3:+20072489 | Msa0804360:CDS |
| ATTTGATCAACTTTAATAGC+AGG | 0.447303 | 5_3:-20071374 | None:intergenic |
| GTCTTGGACTTGTAAATGTC+CGG | 0.451859 | 5_3:-20072508 | None:intergenic |
| ACGAGGTTAGCGTAAGGCTT+TGG | 0.452758 | 5_3:-20073322 | None:intergenic |
| GGCCTGGGGATGCAGGATCA+TGG | 0.454305 | 5_3:+20072671 | Msa0804360:CDS |
| ACTTGCAGAAGAAGCGTAAG+AGG | 0.454799 | 5_3:+20070269 | Msa0804360:intron |
| TATAGGTATATAGTGAGAAA+AGG | 0.454887 | 5_3:+20071302 | Msa0804360:intron |
| GGTCATACAACTTGTTTGCA+TGG | 0.455272 | 5_3:+20072858 | Msa0804360:CDS |
| CAGGATCTTGTTTACACAGT+TGG | 0.455563 | 5_3:+20073627 | Msa0804360:CDS |
| TGGCATCATGTCCCTTACTT+TGG | 0.456230 | 5_3:+20070702 | Msa0804360:CDS |
| GACTTGTAAATGTCCGGTTA+GGG | 0.463817 | 5_3:-20072502 | None:intergenic |
| TGCCAATTTCCCAAACAGTT+GGG | 0.472457 | 5_3:-20073267 | None:intergenic |
| GGCATTCCAGATCGCTCAGC+TGG | 0.474004 | 5_3:+20073286 | Msa0804360:CDS |
| TGGAAGATTATATTTGATCA+TGG | 0.475105 | 5_3:+20073809 | Msa0804360:CDS |
| GTCATACAACTTGTTTGCAT+GGG | 0.477226 | 5_3:+20072859 | Msa0804360:CDS |
| CAGCATTAGAGGCACTTGCT+AGG | 0.490093 | 5_3:-20073868 | None:intergenic |
| TCGTTAATGTATACCCGTCT+TGG | 0.490306 | 5_3:-20072524 | None:intergenic |
| ATGCCAATTTCCCAAACAGT+TGG | 0.493759 | 5_3:-20073268 | None:intergenic |
| ATTCTCTTTGTAGTGAAGTA+GGG | 0.495420 | 5_3:-20074239 | None:intergenic |
| TGCCTCTAATGCTGAAGTGC+AGG | 0.498076 | 5_3:+20073877 | Msa0804360:CDS |
| GTGGTATTTGAACGACCAAA+AGG | 0.498149 | 5_3:+20071347 | Msa0804360:CDS |
| TTAGTAACTATCGAAAGGAT+TGG | 0.501373 | 5_3:+20073652 | Msa0804360:CDS |
| TACGTCTTTGCCAGCATAGT+GGG | 0.502430 | 5_3:-20072185 | None:intergenic |
| TGTAGTGAAGTAGGGAGGAT+TGG | 0.502730 | 5_3:-20074231 | None:intergenic |
| TAATCGTCAAAATTCTCAGC+AGG | 0.503163 | 5_3:+20070322 | Msa0804360:CDS |
| ATGGACAGATGCTAAACAAA+AGG | 0.504220 | 5_3:+20072306 | Msa0804360:CDS |
| CCTTACTTTGGCAAATCCTG+GGG | 0.509142 | 5_3:+20070714 | Msa0804360:CDS |
| TTTGTAAGCACCCACTATGC+TGG | 0.510502 | 5_3:+20072175 | Msa0804360:CDS |
| ATACCAAGGCATGGAATCCA+TGG | 0.511293 | 5_3:+20074278 | Msa0804360:CDS |
| GTTTAGAGACTAACTGGTCT+GGG | 0.514147 | 5_3:-20073369 | None:intergenic |
| TTTGATCAACTTTAATAGCA+GGG | 0.515830 | 5_3:-20071373 | None:intergenic |
| AGATGTGAGATCTTGCTTAA+CGG | 0.517376 | 5_3:-20071987 | None:intergenic |
| GAACTTACAGAGAGGCAAGT+TGG | 0.518644 | 5_3:-20072019 | None:intergenic |
| GACATTTACAAGTCCAAGAC+GGG | 0.518790 | 5_3:+20072511 | Msa0804360:CDS |
| ATGCATACATTGGTCTAGCT+TGG | 0.520047 | 5_3:+20072650 | Msa0804360:CDS |
| AATTACCATTGCAGAGTCCA+TGG | 0.520639 | 5_3:+20071062 | Msa0804360:intron |
| AGATATTAGGCAAAGAAGAA+TGG | 0.520707 | 5_3:+20071592 | Msa0804360:CDS |
| ATGGATTCCATGCCTTGGTA+TGG | 0.521822 | 5_3:-20074276 | None:intergenic |
| AGCATTAGAGGCACTTGCTA+GGG | 0.522110 | 5_3:-20073867 | None:intergenic |
| CGACTGAGAAACTTGTTCCA+TGG | 0.523830 | 5_3:-20071079 | None:intergenic |
| CTCTCCTTCTTGGAATTGGA+TGG | 0.525171 | 5_3:-20072209 | None:intergenic |
| TACTTCACTACAAAGAGAAT+AGG | 0.542664 | 5_3:+20074242 | Msa0804360:CDS |
| ACAGTTGGGCCATTTCTTGG+AGG | 0.543249 | 5_3:-20073253 | None:intergenic |
| AGGAATATCATATTCTGGAA+TGG | 0.543447 | 5_3:+20070747 | Msa0804360:CDS |
| TTTCAGGTGGTGATTAGCAA+TGG | 0.543809 | 5_3:+20070682 | Msa0804360:intron |
| AATACAATCAAGTTAATGGA+TGG | 0.547110 | 5_3:+20071891 | Msa0804360:CDS |
| TAAACAACCAATATAATCCA+TGG | 0.550594 | 5_3:-20074295 | None:intergenic |
| AATCCATGGATTCCATGCCT+TGG | 0.552884 | 5_3:-20074281 | None:intergenic |
| AGGGTTCCACGTTGATTAGG+TGG | 0.553836 | 5_3:-20072483 | None:intergenic |
| AACACAGAACGAGAATATAG+TGG | 0.554593 | 5_3:+20071103 | Msa0804360:CDS |
| AATTATATATGCAGGAGCAC+AGG | 0.555646 | 5_3:+20073761 | Msa0804360:intron |
| TTGTAATCTCCAATATAGCC+AGG | 0.558313 | 5_3:-20072884 | None:intergenic |
| TATCGACTGAACTCAAAAGT+TGG | 0.559908 | 5_3:+20072427 | Msa0804360:CDS |
| CTTACTTTGGCAAATCCTGG+GGG | 0.563800 | 5_3:+20070715 | Msa0804360:CDS |
| AGGGCATGGAGTTCTTCTAT+GGG | 0.567553 | 5_3:+20071140 | Msa0804360:CDS |
| CCATTGCGGAACTCATTACT+CGG | 0.568971 | 5_3:-20071959 | None:intergenic |
| CTCTTTGTAGTGAAGTAGGG+AGG | 0.571873 | 5_3:-20074236 | None:intergenic |
| CAGCGATTTATATCCAACTC+AGG | 0.575588 | 5_3:+20073608 | Msa0804360:CDS |
| TGAAGATGAACATGAGTGGA+CGG | 0.576125 | 5_3:+20068655 | Msa0804360:CDS |
| CCCAGGATTTGCCAAAGTAA+GGG | 0.577911 | 5_3:-20070713 | None:intergenic |
| TTGGATATAAATCGCTGTAA+CGG | 0.579754 | 5_3:-20073602 | None:intergenic |
| GAAGATGAACATGAGTGGAC+GGG | 0.581852 | 5_3:+20068656 | Msa0804360:CDS |
| ATCATGGCAGAGAGAAAGCA+AGG | 0.584093 | 5_3:+20072687 | Msa0804360:CDS |
| AGTAATGAGTTCCGCAATGG+TGG | 0.585879 | 5_3:+20071962 | Msa0804360:CDS |
| AATGCTAAGAATGCATACAT+TGG | 0.588205 | 5_3:+20072640 | Msa0804360:CDS |
| CTACGTCTTTGCCAGCATAG+TGG | 0.588233 | 5_3:-20072186 | None:intergenic |
| GAAATGAAGATGATGATAGA+GGG | 0.589688 | 5_3:+20070788 | Msa0804360:CDS |
| TGGTGTTAGTAACTATCGAA+AGG | 0.597830 | 5_3:+20073647 | Msa0804360:CDS |
| TTGATTGTATTGGTTCTCAG+TGG | 0.609971 | 5_3:-20071879 | None:intergenic |
| TAATCCACAATTTAAAGGAG+AGG | 0.612404 | 5_3:+20071685 | Msa0804360:CDS |
| GATAGTGCCATACCAAGGCA+TGG | 0.612532 | 5_3:+20074269 | Msa0804360:CDS |
| ATAAATTTCAAGCAACCACA+TGG | 0.612722 | 5_3:+20073789 | Msa0804360:CDS |
| GATCATGGTGCTGTAATAAG+TGG | 0.615908 | 5_3:+20073824 | Msa0804360:CDS |
| CTGTTCACGAGGTTAGCGTA+AGG | 0.616934 | 5_3:-20073328 | None:intergenic |
| TTACTTTGGCAAATCCTGGG+GGG | 0.623303 | 5_3:+20070716 | Msa0804360:CDS |
| CAAGATCTCACATCTCATGT+TGG | 0.624859 | 5_3:+20071995 | Msa0804360:CDS |
| CATTGGTCTAGCTTGGCCTG+GGG | 0.625777 | 5_3:+20072657 | Msa0804360:CDS |
| TCCCTATAAACATAGACCAA+AGG | 0.628590 | 5_3:+20071174 | Msa0804360:CDS |
| GACGGGTTCTCTTGTTGTGG+TGG | 0.629512 | 5_3:+20068673 | Msa0804360:CDS |
| GTGTAAACAAGATCCTGAGT+TGG | 0.634528 | 5_3:-20073621 | None:intergenic |
| AAGATGAAGATGAACATGAG+TGG | 0.636590 | 5_3:+20068651 | None:intergenic |
| GGACATTTACAAGTCCAAGA+CGG | 0.637789 | 5_3:+20072510 | Msa0804360:CDS |
| CCGAGTAATGAGTTCCGCAA+TGG | 0.639316 | 5_3:+20071959 | Msa0804360:CDS |
| ATCAAATATAATCTTCCATG+TGG | 0.640692 | 5_3:-20073804 | None:intergenic |
| TCTCCAATTACAATTAAACC+AGG | 0.641476 | 5_3:+20072914 | Msa0804360:CDS |
| TCAATGAAAGATAGAGATGA+CGG | 0.642085 | 5_3:+20071617 | Msa0804360:CDS |
| GTGGACGGGTTCTCTTGTTG+TGG | 0.651155 | 5_3:+20068670 | Msa0804360:CDS |
| GTAGCCATCCAATTCCAAGA+AGG | 0.653857 | 5_3:+20072205 | Msa0804360:CDS |
| GCTTAACGGGTCCACCATTG+CGG | 0.655063 | 5_3:-20071973 | None:intergenic |
| GCAAACAAGTTGTATGACCC+AGG | 0.663552 | 5_3:-20072854 | None:intergenic |
| GAGATGATAGTGCCATACCA+AGG | 0.696169 | 5_3:+20074264 | Msa0804360:CDS |
| TCGTGAATAATCTGTTCACG+AGG | 0.698648 | 5_3:-20073339 | None:intergenic |
| TAGTTGAAGGACTTTCTAAG+CGG | 0.700259 | 5_3:-20074421 | None:intergenic |
| ACAGAACGAGAATATAGTGG+AGG | 0.712115 | 5_3:+20071106 | Msa0804360:CDS |
| TTCATTCCACCTAATCAACG+TGG | 0.715096 | 5_3:+20072477 | Msa0804360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAAAAAGATAAAATAAA+GGG | - | chr5_3:20069234-20069253 | None:intergenic | 10.0% |
| !! | TAATAAAAATTGTGAATTAA+TGG | - | chr5_3:20069538-20069557 | None:intergenic | 10.0% |
| !! | AATTCAATTTAAAAAAACAA+CGG | + | chr5_3:20069786-20069805 | Msa0804360:intron | 10.0% |
| !! | TAAAAATAAAGTAATTAAAC+AGG | + | chr5_3:20069901-20069920 | Msa0804360:intron | 10.0% |
| !! | TAATTATAAACATATTAATG+TGG | + | chr5_3:20070445-20070464 | Msa0804360:intron | 10.0% |
| !! | TTTGATTGAATAAAATTATA+AGG | - | chr5_3:20072453-20072472 | None:intergenic | 10.0% |
| !! | AAAAAATAGGTTTATAATTA+GGG | - | chr5_3:20073457-20073476 | None:intergenic | 10.0% |
| !! | AAAAAAATAGGTTTATAATT+AGG | - | chr5_3:20073458-20073477 | None:intergenic | 10.0% |
| !!! | AGATAATGAAATTATTTTAA+AGG | - | chr5_3:20073987-20074006 | None:intergenic | 10.0% |
| !! | AAAAGAAAGATTAAGAAATA+TGG | - | chr5_3:20068766-20068785 | None:intergenic | 15.0% |
| !! | CCATAAAAAAGATAAAATAA+AGG | - | chr5_3:20069235-20069254 | None:intergenic | 15.0% |
| !!! | CCTTTATTTTATCTTTTTTA+TGG | + | chr5_3:20069232-20069251 | Msa0804360:intron | 15.0% |
| !! | AAAACATAGAAGATAAATAA+AGG | - | chr5_3:20069289-20069308 | None:intergenic | 15.0% |
| !!! | CTATGTTTTTTATTTTTTTG+TGG | + | chr5_3:20069300-20069319 | Msa0804360:intron | 15.0% |
| !! | ATTTGTATAACAACAAAAAT+TGG | - | chr5_3:20069858-20069877 | None:intergenic | 15.0% |
| !!! | TTTGTTGTTATACAAATATA+AGG | + | chr5_3:20069861-20069880 | Msa0804360:intron | 15.0% |
| !!! | TTGTTGTTATACAAATATAA+GGG | + | chr5_3:20069862-20069881 | Msa0804360:intron | 15.0% |
| !!! | AAAAAGGATATTTTATCTAA+AGG | + | chr5_3:20070026-20070045 | Msa0804360:intron | 15.0% |
| !!! | AAAAGGATATTTTATCTAAA+GGG | + | chr5_3:20070027-20070046 | Msa0804360:intron | 15.0% |
| !!! | GATATTTTAATTATGGTAAA+GGG | - | chr5_3:20070106-20070125 | None:intergenic | 15.0% |
| !!! | CATATTCGATATTTTAATTA+TGG | - | chr5_3:20070113-20070132 | None:intergenic | 15.0% |
| !! | TTAATTATATACTAACTACT+AGG | + | chr5_3:20070345-20070364 | Msa0804360:intron | 15.0% |
| !! | AGTAATATAAAGATTTACAA+TGG | - | chr5_3:20070473-20070492 | None:intergenic | 15.0% |
| !! | ATTGTAAATCTTTATATTAC+TGG | + | chr5_3:20070472-20070491 | Msa0804360:intron | 15.0% |
| !!! | TTTTGAATAATTTTGTTGAA+TGG | - | chr5_3:20070612-20070631 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTAAATGATTTTC+AGG | + | chr5_3:20070666-20070685 | Msa0804360:intron | 15.0% |
| !! | ATAAGAGACTAATTTATAAT+TGG | + | chr5_3:20071039-20071058 | Msa0804360:intron | 15.0% |
| !!! | TTTTATTTTATCAGTGAAAT+TGG | - | chr5_3:20072101-20072120 | None:intergenic | 15.0% |
| !! | TTATAAAAAATATTGTACCT+GGG | + | chr5_3:20072837-20072856 | Msa0804360:CDS | 15.0% |
| !!! | TGTGATATTATTTTGATTAT+TGG | - | chr5_3:20072960-20072979 | None:intergenic | 15.0% |
| !! | TAATTGTTTAGTTAATAGTT+TGG | - | chr5_3:20073044-20073063 | None:intergenic | 15.0% |
| !! | TGAAATATATATTCTATGAT+AGG | + | chr5_3:20073556-20073575 | Msa0804360:intron | 15.0% |
| !!! | TAATATATACTTGAATGTTT+TGG | + | chr5_3:20074171-20074190 | Msa0804360:intron | 15.0% |
| !! | TTGAGACAAATAAAATCATA+AGG | + | chr5_3:20068854-20068873 | Msa0804360:intron | 20.0% |
| !! | TTTCATCATCCATATATATA+TGG | - | chr5_3:20069399-20069418 | None:intergenic | 20.0% |
| !! | AAATGACTCTTTATTACAAT+TGG | + | chr5_3:20069474-20069493 | Msa0804360:intron | 20.0% |
| !! | CAATTATACTATATCAACAA+TGG | + | chr5_3:20069505-20069524 | Msa0804360:intron | 20.0% |
| !! | CAAAAATTGGACAAAAAAAA+AGG | - | chr5_3:20069845-20069864 | None:intergenic | 20.0% |
| !!! | TATTTTATCTAAAGGGAAAT+TGG | + | chr5_3:20070034-20070053 | Msa0804360:intron | 20.0% |
| !!! | TTCTTTTGCTATTAGTTTTA+GGG | - | chr5_3:20070076-20070095 | None:intergenic | 20.0% |
| !!! | TTTCTTTTGCTATTAGTTTT+AGG | - | chr5_3:20070077-20070096 | None:intergenic | 20.0% |
| !!! | CGATATTTTAATTATGGTAA+AGG | - | chr5_3:20070107-20070126 | None:intergenic | 20.0% |
| !!! | TAAAATATCGAATATGCTTT+TGG | + | chr5_3:20070117-20070136 | Msa0804360:intron | 20.0% |
| !! | AATAGGACAAATAAACAAAA+AGG | - | chr5_3:20070155-20070174 | None:intergenic | 20.0% |
| !! | TTCAATTGAAAAATAGGAAA+GGG | - | chr5_3:20070183-20070202 | None:intergenic | 20.0% |
| !! | ATTCAATTGAAAAATAGGAA+AGG | - | chr5_3:20070184-20070203 | None:intergenic | 20.0% |
| !! | TGTCAATTCAATTGAAAAAT+AGG | - | chr5_3:20070189-20070208 | None:intergenic | 20.0% |
| !! | AATTAAGTCCAAAATTGAAT+AGG | - | chr5_3:20070816-20070835 | None:intergenic | 20.0% |
| !!! | TATGCTTTGTTATTATTACT+AGG | + | chr5_3:20070894-20070913 | Msa0804360:intron | 20.0% |
| !!! | CTATTAAAGTTGATCAAATA+AGG | + | chr5_3:20071378-20071397 | Msa0804360:CDS | 20.0% |
| !! | TTATAACAAGAGCTAATATT+TGG | - | chr5_3:20071491-20071510 | None:intergenic | 20.0% |
| !!! | AATAGGTTTATGCTTTTTTT+TGG | + | chr5_3:20071718-20071737 | Msa0804360:intron | 20.0% |
| !!! | ATAGGTTTATGCTTTTTTTT+GGG | + | chr5_3:20071719-20071738 | Msa0804360:intron | 20.0% |
| !! | AGGTTTATATTATTAGTACA+TGG | + | chr5_3:20071773-20071792 | Msa0804360:intron | 20.0% |
| !! | CATGCAAATAAATTTATGAA+TGG | + | chr5_3:20071818-20071837 | Msa0804360:intron | 20.0% |
| !!! | AGACTTATAAAAAGGTTTTT+GGG | + | chr5_3:20072230-20072249 | Msa0804360:CDS | 20.0% |
| !! | AAGATCAATTTAAATCTCTA+TGG | + | chr5_3:20072287-20072306 | Msa0804360:CDS | 20.0% |
| !! | TTTCTTTACCATATTCATTA+GGG | + | chr5_3:20072603-20072622 | Msa0804360:intron | 20.0% |
| !! | TGAATTATATACAAATTCAC+AGG | + | chr5_3:20072772-20072791 | Msa0804360:intron | 20.0% |
| !! | GAATTATATACAAATTCACA+GGG | + | chr5_3:20072773-20072792 | Msa0804360:intron | 20.0% |
| !!! | TTATAACAAAGTTTCCATTT+TGG | - | chr5_3:20072823-20072842 | None:intergenic | 20.0% |
| !! | GTTATAAAAAATATTGTACC+TGG | + | chr5_3:20072836-20072855 | Msa0804360:CDS | 20.0% |
| !! | AGAGTTGTTATATATAAAGA+AGG | + | chr5_3:20073486-20073505 | Msa0804360:intron | 20.0% |
| !! | GAGTTGTTATATATAAAGAA+GGG | + | chr5_3:20073487-20073506 | Msa0804360:intron | 20.0% |
| !! | ATATATTCTATGATAGGTTT+AGG | + | chr5_3:20073562-20073581 | Msa0804360:intron | 20.0% |
| !! | TAAACTTCAATTATATATGC+AGG | + | chr5_3:20073753-20073772 | Msa0804360:intron | 20.0% |
| !! | GAGAACTGAAAATATATTTA+GGG | - | chr5_3:20073938-20073957 | None:intergenic | 20.0% |
| !! | GAGAATATATTATCTTACAT+CGG | - | chr5_3:20074146-20074165 | None:intergenic | 20.0% |
| ! | GAATGAGATATGATCTAAAT+AGG | - | chr5_3:20068736-20068755 | None:intergenic | 25.0% |
| ! | ATTTAGATCATATCTCATTC+AGG | + | chr5_3:20068736-20068755 | Msa0804360:CDS | 25.0% |
| !!! | CTGCTTAGAGTTTTAAATAA+CGG | + | chr5_3:20068903-20068922 | Msa0804360:intron | 25.0% |
| !! | ATGTAATCCTTCTCTATTTT+TGG | - | chr5_3:20069116-20069135 | None:intergenic | 25.0% |
| !! | CCATGATTCTTCTATTTTAT+TGG | - | chr5_3:20069156-20069175 | None:intergenic | 25.0% |
| ! | CCAATAAAATAGAAGAATCA+TGG | + | chr5_3:20069153-20069172 | Msa0804360:intron | 25.0% |
| !!! | AGAATCATGGTTTTAGTATA+TGG | + | chr5_3:20069166-20069185 | Msa0804360:intron | 25.0% |
| !!! | AATTTTTTCTGAGAAGACAT+GGG | - | chr5_3:20069198-20069217 | None:intergenic | 25.0% |
| !!! | AAATTTTTTCTGAGAAGACA+TGG | - | chr5_3:20069199-20069218 | None:intergenic | 25.0% |
| ! | TCTTTATTACAATTGGATAC+AGG | + | chr5_3:20069481-20069500 | Msa0804360:intron | 25.0% |
| !! | TCCTATAGACTTAACTTTTA+CGG | + | chr5_3:20069601-20069620 | Msa0804360:intron | 25.0% |
| ! | AATAAAATCATAGTGCTTTG+AGG | - | chr5_3:20069655-20069674 | None:intergenic | 25.0% |
| ! | AGTAATTAAACAGGATGTAT+AGG | + | chr5_3:20069910-20069929 | Msa0804360:intron | 25.0% |
| ! | AGATTCCAATATTCCAATAT+AGG | + | chr5_3:20069998-20070017 | Msa0804360:intron | 25.0% |
| ! | TCAATTGAAAAATAGGAAAG+GGG | - | chr5_3:20070182-20070201 | None:intergenic | 25.0% |
| !!! | TTTTGAAACAGAAATGCTTA+AGG | + | chr5_3:20070369-20070388 | Msa0804360:intron | 25.0% |
| ! | ATATTACTGGAAAAATCCAA+CGG | + | chr5_3:20070485-20070504 | Msa0804360:intron | 25.0% |
| ! | CTGCAATGTAACAAATTTAA+AGG | - | chr5_3:20070549-20070568 | None:intergenic | 25.0% |
| ! | CTTCAAACTGTGATTAAAAA+AGG | + | chr5_3:20070581-20070600 | Msa0804360:intron | 25.0% |
| ! | AACTGTGATTAAAAAAGGAT+AGG | + | chr5_3:20070586-20070605 | Msa0804360:intron | 25.0% |
| !!! | TTCTTTAAATGATTTTCAGG+TGG | + | chr5_3:20070669-20070688 | Msa0804360:intron | 25.0% |
| ! | TGTTAATGAATATAAGCTTG+TGG | - | chr5_3:20070840-20070859 | None:intergenic | 25.0% |
| ! | ACAAAGCATAATTATGTCAA+TGG | - | chr5_3:20070884-20070903 | None:intergenic | 25.0% |
| !!! | TTTTTGGCAAAACATTTCAA+AGG | + | chr5_3:20070930-20070949 | Msa0804360:CDS | 25.0% |
| ! | TTGATTATGAACATGTTTCT+TGG | + | chr5_3:20071237-20071256 | Msa0804360:intron | 25.0% |
| ! | TATAGGTATATAGTGAGAAA+AGG | + | chr5_3:20071302-20071321 | Msa0804360:intron | 25.0% |
| ! | TTTGATCAACTTTAATAGCA+GGG | - | chr5_3:20071376-20071395 | None:intergenic | 25.0% |
| ! | ATTTGATCAACTTTAATAGC+AGG | - | chr5_3:20071377-20071396 | None:intergenic | 25.0% |
| !!! | ATTTTTGATAGTTAGTTACC+TGG | - | chr5_3:20071426-20071445 | None:intergenic | 25.0% |
| ! | AACCAATACAATCAAGTTAA+TGG | + | chr5_3:20071887-20071906 | Msa0804360:CDS | 25.0% |
| !! | ATCCATTAACTTGATTGTAT+TGG | - | chr5_3:20071892-20071911 | None:intergenic | 25.0% |
| ! | AATACAATCAAGTTAATGGA+TGG | + | chr5_3:20071891-20071910 | Msa0804360:CDS | 25.0% |
| !! | GAGACTTATAAAAAGGTTTT+TGG | + | chr5_3:20072229-20072248 | Msa0804360:CDS | 25.0% |
| ! | GAATTCAAGTAAACAAAGAT+AGG | - | chr5_3:20072256-20072275 | None:intergenic | 25.0% |
| ! | GGGAGTAAATAAATAAATCA+TGG | - | chr5_3:20072354-20072373 | None:intergenic | 25.0% |
| ! | GTCATTGCATACTAATAAAT+GGG | - | chr5_3:20072374-20072393 | None:intergenic | 25.0% |
| ! | TGTCATTGCATACTAATAAA+TGG | - | chr5_3:20072375-20072394 | None:intergenic | 25.0% |
| ! | CTTTCTTTACCATATTCATT+AGG | + | chr5_3:20072602-20072621 | Msa0804360:intron | 25.0% |
| ! | TTCTTTACCATATTCATTAG+GGG | + | chr5_3:20072604-20072623 | Msa0804360:intron | 25.0% |
| ! | TTACCTGGTTTAATTGTAAT+TGG | - | chr5_3:20072920-20072939 | None:intergenic | 25.0% |
| ! | ATTTATTTGCAAACTTTACC+TGG | - | chr5_3:20072935-20072954 | None:intergenic | 25.0% |
| !! | CGTCACTAGTAATAATTTTT+CGG | - | chr5_3:20072989-20073008 | None:intergenic | 25.0% |
| ! | GTAACAATGTGTATATATGT+AGG | + | chr5_3:20073196-20073215 | Msa0804360:intron | 25.0% |
| ! | GAACGTCAACTATTTAATAA+TGG | - | chr5_3:20073394-20073413 | None:intergenic | 25.0% |
| !! | ATATATTTCATTCGAGTTAG+TGG | - | chr5_3:20073546-20073565 | None:intergenic | 25.0% |
| ! | ATCAAATATAATCTTCCATG+TGG | - | chr5_3:20073807-20073826 | None:intergenic | 25.0% |
| ! | TGGAAGATTATATTTGATCA+TGG | + | chr5_3:20073809-20073828 | Msa0804360:CDS | 25.0% |
| ! | CGAGAACTGAAAATATATTT+AGG | - | chr5_3:20073939-20073958 | None:intergenic | 25.0% |
| !! | TATTTTCAGTTCTCGAAATA+CGG | + | chr5_3:20073944-20073963 | Msa0804360:intron | 25.0% |
| ! | TATTGGTAAAACTTTCTTTG+TGG | - | chr5_3:20074114-20074133 | None:intergenic | 25.0% |
| ! | TAAACAACCAATATAATCCA+TGG | - | chr5_3:20074298-20074317 | None:intergenic | 25.0% |
| !! | AATCAAGATTTGACTCATTT+TGG | + | chr5_3:20074375-20074394 | Msa0804360:CDS | 25.0% |
| TAGAGAATCACAATCAAATG+CGG | + | chr5_3:20068967-20068986 | Msa0804360:intron | 30.0% | |
| TTCAAATTGCAACACAATCA+CGG | - | chr5_3:20069008-20069027 | None:intergenic | 30.0% | |
| TTTGAACAACCATTACATAG+CGG | + | chr5_3:20069022-20069041 | Msa0804360:intron | 30.0% | |
| ! | GCATGCACATTTTTAAACAA+AGG | - | chr5_3:20069067-20069086 | None:intergenic | 30.0% |
| !!! | AATCCTTCTCTATTTTTGGT+AGG | - | chr5_3:20069112-20069131 | None:intergenic | 30.0% |
| !!! | ATCATGGTTTTAGTATATGG+TGG | + | chr5_3:20069169-20069188 | Msa0804360:intron | 30.0% |
| AGTGTGTGTCCATATATATA+TGG | + | chr5_3:20069387-20069406 | Msa0804360:intron | 30.0% | |
| ACCGTAAAAGTTAAGTCTAT+AGG | - | chr5_3:20069605-20069624 | None:intergenic | 30.0% | |
| AGAATAACGATATTTGCACT+TGG | - | chr5_3:20069943-20069962 | None:intergenic | 30.0% | |
| AGCAACCTATATTGGAATAT+TGG | - | chr5_3:20070006-20070025 | None:intergenic | 30.0% | |
| TCCAATATAGGTTGCTAAAA+AGG | + | chr5_3:20070010-20070029 | Msa0804360:intron | 30.0% | |
| !! | TCCTTTTTAGCAACCTATAT+TGG | - | chr5_3:20070014-20070033 | None:intergenic | 30.0% |
| TTTATCTAAAGGGAAATTGG+AGG | + | chr5_3:20070037-20070056 | Msa0804360:intron | 30.0% | |
| ! | TTTTGACGATTAATAGTGAC+TGG | - | chr5_3:20070314-20070333 | None:intergenic | 30.0% |
| GTCTTAGGAATATCATATTC+TGG | + | chr5_3:20070742-20070761 | Msa0804360:CDS | 30.0% | |
| ! | AGGAATATCATATTCTGGAA+TGG | + | chr5_3:20070747-20070766 | Msa0804360:CDS | 30.0% |
| ATGGAAAATGTACTTGAATC+TGG | + | chr5_3:20070766-20070785 | Msa0804360:CDS | 30.0% | |
| GAAATGAAGATGATGATAGA+GGG | + | chr5_3:20070788-20070807 | Msa0804360:CDS | 30.0% | |
| !! | TAGTGGAGGTTTCATTTTTA+AGG | + | chr5_3:20071120-20071139 | Msa0804360:CDS | 30.0% |
| !! | AGTGGAGGTTTCATTTTTAA+GGG | + | chr5_3:20071121-20071140 | Msa0804360:CDS | 30.0% |
| ACCTTTGGTCTATGTTTATA+GGG | - | chr5_3:20071178-20071197 | None:intergenic | 30.0% | |
| AAATCCTAGTCCCAATTATT+TGG | + | chr5_3:20071199-20071218 | Msa0804360:intron | 30.0% | |
| ACAAACTGTGCCAAATAATT+GGG | - | chr5_3:20071212-20071231 | None:intergenic | 30.0% | |
| ATATGGCCATATCAGATATT+AGG | + | chr5_3:20071579-20071598 | Msa0804360:CDS | 30.0% | |
| TCTTTGCCTAATATCTGATA+TGG | - | chr5_3:20071588-20071607 | None:intergenic | 30.0% | |
| AGATATTAGGCAAAGAAGAA+TGG | + | chr5_3:20071592-20071611 | Msa0804360:CDS | 30.0% | |
| TCAATGAAAGATAGAGATGA+CGG | + | chr5_3:20071617-20071636 | Msa0804360:CDS | 30.0% | |
| !! | CCTTTAAATTGTGGATTAGA+TGG | - | chr5_3:20071683-20071702 | None:intergenic | 30.0% |
| CCATCTAATCCACAATTTAA+AGG | + | chr5_3:20071680-20071699 | Msa0804360:CDS | 30.0% | |
| TAATCCACAATTTAAAGGAG+AGG | + | chr5_3:20071685-20071704 | Msa0804360:CDS | 30.0% | |
| GGAGAGGTAACAAAATAAAT+AGG | + | chr5_3:20071701-20071720 | Msa0804360:intron | 30.0% | |
| !! | CTCAATTTGGTGCTATTAAT+AGG | + | chr5_3:20071753-20071772 | Msa0804360:intron | 30.0% |
| CATGAAAAACCAGAACTAAA+CGG | - | chr5_3:20072075-20072094 | None:intergenic | 30.0% | |
| ! | TTTTATAAGTCTCTCCTTCT+TGG | - | chr5_3:20072222-20072241 | None:intergenic | 30.0% |
| AGAAGGAGAGACTTATAAAA+AGG | + | chr5_3:20072222-20072241 | Msa0804360:CDS | 30.0% | |
| TCTTTACCATATTCATTAGG+GGG | + | chr5_3:20072605-20072624 | Msa0804360:intron | 30.0% | |
| AATGCTAAGAATGCATACAT+TGG | + | chr5_3:20072640-20072659 | Msa0804360:CDS | 30.0% | |
| TCTCCAATTACAATTAAACC+AGG | + | chr5_3:20072914-20072933 | Msa0804360:CDS | 30.0% | |
| GTATATAATCCTCCAAGAAA+TGG | + | chr5_3:20073244-20073263 | Msa0804360:CDS | 30.0% | |
| ATAATGGTTTAGAGACTAAC+TGG | - | chr5_3:20073378-20073397 | None:intergenic | 30.0% | |
| ! | CTCTTTTGCGCTAAAAAAAT+AGG | - | chr5_3:20073470-20073489 | None:intergenic | 30.0% |
| TATATATAAAGAAGGGACAG+AGG | + | chr5_3:20073494-20073513 | Msa0804360:intron | 30.0% | |
| TATGATAGGTTTAGGCAATA+TGG | + | chr5_3:20073570-20073589 | Msa0804360:intron | 30.0% | |
| TTGGATATAAATCGCTGTAA+CGG | - | chr5_3:20073605-20073624 | None:intergenic | 30.0% | |
| ! | CTTGTTTAAGTGTCATGTTT+TGG | + | chr5_3:20073728-20073747 | Msa0804360:intron | 30.0% |
| GTGGTTGCTTGAAATTTATT+AGG | - | chr5_3:20073788-20073807 | None:intergenic | 30.0% | |
| ATAAATTTCAAGCAACCACA+TGG | + | chr5_3:20073789-20073808 | Msa0804360:CDS | 30.0% | |
| ! | AATACGGTAGTTATTGCTTT+TGG | + | chr5_3:20073960-20073979 | Msa0804360:intron | 30.0% |
| TACATCGGTGTATACTTTAT+TGG | - | chr5_3:20074131-20074150 | None:intergenic | 30.0% | |
| ATTCTCTTTGTAGTGAAGTA+GGG | - | chr5_3:20074242-20074261 | None:intergenic | 30.0% | |
| TATTCTCTTTGTAGTGAAGT+AGG | - | chr5_3:20074243-20074262 | None:intergenic | 30.0% | |
| TACTTCACTACAAAGAGAAT+AGG | + | chr5_3:20074242-20074261 | Msa0804360:CDS | 30.0% | |
| ! | ATGGAATCCATGGATTATAT+TGG | + | chr5_3:20074288-20074307 | Msa0804360:CDS | 30.0% |
| ! | TTGCAACTTTGTTTCACGTT+TGG | + | chr5_3:20068708-20068727 | Msa0804360:CDS | 35.0% |
| GAAGCAAGATCAAGCAAATA+TGG | - | chr5_3:20068797-20068816 | None:intergenic | 35.0% | |
| GGTTGCACTAACAATTTCAA+CGG | + | chr5_3:20068924-20068943 | Msa0804360:intron | 35.0% | |
| CTTCCTACCAAAAATAGAGA+AGG | + | chr5_3:20069106-20069125 | Msa0804360:intron | 35.0% | |
| !! | TGCAATTACTTTTACACGTC+TGG | + | chr5_3:20069420-20069439 | Msa0804360:intron | 35.0% |
| ! | TATATGAGAGAGTGTGTCAT+GGG | - | chr5_3:20069682-20069701 | None:intergenic | 35.0% |
| ! | TTATATGAGAGAGTGTGTCA+TGG | - | chr5_3:20069683-20069702 | None:intergenic | 35.0% |
| ! | TCGTTATTCTGTCACTTCTA+AGG | + | chr5_3:20069953-20069972 | Msa0804360:intron | 35.0% |
| ! | CGTTATTCTGTCACTTCTAA+GGG | + | chr5_3:20069954-20069973 | Msa0804360:intron | 35.0% |
| ! | GTTATTCTGTCACTTCTAAG+GGG | + | chr5_3:20069955-20069974 | Msa0804360:intron | 35.0% |
| AATAGGAAAGGGGAAACAAT+AGG | - | chr5_3:20070172-20070191 | None:intergenic | 35.0% | |
| TAATCGTCAAAATTCTCAGC+AGG | + | chr5_3:20070322-20070341 | Msa0804360:CDS | 35.0% | |
| GGAAATGAAGATGATGATAG+AGG | + | chr5_3:20070787-20070806 | Msa0804360:CDS | 35.0% | |
| !!! | AGAGGGTACCTATTCAATTT+TGG | + | chr5_3:20070805-20070824 | Msa0804360:intron | 35.0% |
| !! | AGGTACTTTGACGTTGTTTT+TGG | + | chr5_3:20070914-20070933 | Msa0804360:intron | 35.0% |
| AACACAGAACGAGAATATAG+TGG | + | chr5_3:20071103-20071122 | Msa0804360:CDS | 35.0% | |
| !! | AGGTTTCATTTTTAAGGGCA+TGG | + | chr5_3:20071126-20071145 | Msa0804360:CDS | 35.0% |
| TCCCTATAAACATAGACCAA+AGG | + | chr5_3:20071174-20071193 | Msa0804360:CDS | 35.0% | |
| CACCTTTGGTCTATGTTTAT+AGG | - | chr5_3:20071179-20071198 | None:intergenic | 35.0% | |
| CACAAACTGTGCCAAATAAT+TGG | - | chr5_3:20071213-20071232 | None:intergenic | 35.0% | |
| ! | TTCTGGATTTTACACTTACG+TGG | + | chr5_3:20071328-20071347 | Msa0804360:CDS | 35.0% |
| ! | TTAATAGCAGGGAATCCTTT+TGG | - | chr5_3:20071365-20071384 | None:intergenic | 35.0% |
| !!! | AAGGACTGTTTTTAAACCCA+AGG | + | chr5_3:20071397-20071416 | Msa0804360:CDS | 35.0% |
| ! | TAGAGATGACGGTCAAAAAT+TGG | + | chr5_3:20071628-20071647 | Msa0804360:CDS | 35.0% |
| GTTACCTCTCCTTTAAATTG+TGG | - | chr5_3:20071692-20071711 | None:intergenic | 35.0% | |
| !! | GGTGTCATTTCTACTCAATT+TGG | + | chr5_3:20071740-20071759 | Msa0804360:intron | 35.0% |
| GAATGGTTTATGTTGCACTT+AGG | + | chr5_3:20071835-20071854 | Msa0804360:intron | 35.0% | |
| !! | TTGATTGTATTGGTTCTCAG+TGG | - | chr5_3:20071882-20071901 | None:intergenic | 35.0% |
| TGTTATGATCCAAAAACCCA+CGG | - | chr5_3:20071939-20071958 | None:intergenic | 35.0% | |
| AGATGTGAGATCTTGCTTAA+CGG | - | chr5_3:20071990-20072009 | None:intergenic | 35.0% | |
| ATGGACAGATGCTAAACAAA+AGG | + | chr5_3:20072306-20072325 | Msa0804360:CDS | 35.0% | |
| ! | TATCGACTGAACTCAAAAGT+TGG | + | chr5_3:20072427-20072446 | Msa0804360:CDS | 35.0% |
| CTTTACCATATTCATTAGGG+GGG | + | chr5_3:20072606-20072625 | Msa0804360:intron | 35.0% | |
| TTTACCATATTCATTAGGGG+GGG | + | chr5_3:20072607-20072626 | Msa0804360:intron | 35.0% | |
| ! | ATTCACAGGGCTATCAATTT+TGG | + | chr5_3:20072786-20072805 | Msa0804360:intron | 35.0% |
| ! | GTCATACAACTTGTTTGCAT+GGG | + | chr5_3:20072859-20072878 | Msa0804360:CDS | 35.0% |
| TTGTAATCTCCAATATAGCC+AGG | - | chr5_3:20072887-20072906 | None:intergenic | 35.0% | |
| TACAAACTAATTGCGTCTCT+AGG | + | chr5_3:20073099-20073118 | Msa0804360:intron | 35.0% | |
| !! | TACGAGTGAATTCAAGTTGA+TGG | - | chr5_3:20073227-20073246 | None:intergenic | 35.0% |
| CAACAGAAAGCTAATTACCT+TGG | - | chr5_3:20073693-20073712 | None:intergenic | 35.0% | |
| ! | AATTATATATGCAGGAGCAC+AGG | + | chr5_3:20073761-20073780 | Msa0804360:intron | 35.0% |
| ATGAACACTAGGTACTTCTA+TGG | - | chr5_3:20074321-20074340 | None:intergenic | 35.0% | |
| !! | AGAAGTACCTAGTGTTCATT+TGG | + | chr5_3:20074322-20074341 | Msa0804360:CDS | 35.0% |
| ! | CCTTTTACCAAATGAACACT+AGG | - | chr5_3:20074332-20074351 | None:intergenic | 35.0% |
| CCTAGTGTTCATTTGGTAAA+AGG | + | chr5_3:20074329-20074348 | Msa0804360:CDS | 35.0% | |
| !! | AGATTTGACTCATTTTGGCA+AGG | + | chr5_3:20074380-20074399 | Msa0804360:CDS | 35.0% |
| TAGTTGAAGGACTTTCTAAG+CGG | - | chr5_3:20074424-20074443 | None:intergenic | 35.0% | |
| GGTTTCAACTTTGTAGTTGA+AGG | - | chr5_3:20074437-20074456 | None:intergenic | 35.0% | |
| TGAAGATGAACATGAGTGGA+CGG | + | chr5_3:20068655-20068674 | Msa0804360:CDS | 40.0% | |
| ! | CTTGTTGTGGTGGTACATAA+TGG | + | chr5_3:20068683-20068702 | Msa0804360:CDS | 40.0% |
| CAATCTGAACCGCTATGTAA+TGG | - | chr5_3:20069034-20069053 | None:intergenic | 40.0% | |
| AGTGAAATGTTGCATGCAGA+TGG | - | chr5_3:20069260-20069279 | None:intergenic | 40.0% | |
| !! | AGGAGCATTCAATGTGTATG+TGG | - | chr5_3:20069635-20069654 | None:intergenic | 40.0% |
| ! | TTTCAGGTGGTGATTAGCAA+TGG | + | chr5_3:20070682-20070701 | Msa0804360:intron | 40.0% |
| AATTACCATTGCAGAGTCCA+TGG | + | chr5_3:20071062-20071081 | Msa0804360:intron | 40.0% | |
| ACAGAACGAGAATATAGTGG+AGG | + | chr5_3:20071106-20071125 | Msa0804360:CDS | 40.0% | |
| TGTGCCAAATAATTGGGACT+AGG | - | chr5_3:20071206-20071225 | None:intergenic | 40.0% | |
| ATAGTGAGAAAAGGCGATTC+TGG | + | chr5_3:20071311-20071330 | Msa0804360:CDS | 40.0% | |
| GTGGTATTTGAACGACCAAA+AGG | + | chr5_3:20071347-20071366 | Msa0804360:CDS | 40.0% | |
| ! | TTTTTAAACCCAAGGAAGCC+AGG | + | chr5_3:20071405-20071424 | Msa0804360:CDS | 40.0% |
| TGCATGCAGCTTCAACTATA+TGG | + | chr5_3:20071562-20071581 | Msa0804360:intron | 40.0% | |
| TGTGTTAAGAGAACAGCTTC+AGG | - | chr5_3:20071659-20071678 | None:intergenic | 40.0% | |
| TGGTTTATGTTGCACTTAGG+TGG | + | chr5_3:20071838-20071857 | Msa0804360:intron | 40.0% | |
| GTTATGATCCAAAAACCCAC+GGG | - | chr5_3:20071938-20071957 | None:intergenic | 40.0% | |
| GATGTGAGATCTTGCTTAAC+GGG | - | chr5_3:20071989-20072008 | None:intergenic | 40.0% | |
| CAAGATCTCACATCTCATGT+TGG | + | chr5_3:20071995-20072014 | Msa0804360:CDS | 40.0% | |
| AACTTACAGAGAGGCAAGTT+GGG | - | chr5_3:20072021-20072040 | None:intergenic | 40.0% | |
| GATGTGTTGAACTTACAGAG+AGG | - | chr5_3:20072030-20072049 | None:intergenic | 40.0% | |
| CTAAACGGACGATATGTAAC+AGG | - | chr5_3:20072060-20072079 | None:intergenic | 40.0% | |
| ! | ACATATCGTCCGTTTAGTTC+TGG | + | chr5_3:20072063-20072082 | Msa0804360:intron | 40.0% |
| AAGTCTCTCCTTCTTGGAAT+TGG | - | chr5_3:20072216-20072235 | None:intergenic | 40.0% | |
| TTCATTCCACCTAATCAACG+TGG | + | chr5_3:20072477-20072496 | Msa0804360:CDS | 40.0% | |
| GACTTGTAAATGTCCGGTTA+GGG | - | chr5_3:20072505-20072524 | None:intergenic | 40.0% | |
| GTCTTGGACTTGTAAATGTC+CGG | - | chr5_3:20072511-20072530 | None:intergenic | 40.0% | |
| GGACATTTACAAGTCCAAGA+CGG | + | chr5_3:20072510-20072529 | Msa0804360:CDS | 40.0% | |
| GACATTTACAAGTCCAAGAC+GGG | + | chr5_3:20072511-20072530 | Msa0804360:CDS | 40.0% | |
| TCGTTAATGTATACCCGTCT+TGG | - | chr5_3:20072527-20072546 | None:intergenic | 40.0% | |
| ! | ATGCATACATTGGTCTAGCT+TGG | + | chr5_3:20072650-20072669 | Msa0804360:CDS | 40.0% |
| ! | GGTCATACAACTTGTTTGCA+TGG | + | chr5_3:20072858-20072877 | Msa0804360:CDS | 40.0% |
| AAGAAATGGCCCAACTGTTT+GGG | + | chr5_3:20073258-20073277 | Msa0804360:CDS | 40.0% | |
| TGCCAATTTCCCAAACAGTT+GGG | - | chr5_3:20073270-20073289 | None:intergenic | 40.0% | |
| ATGCCAATTTCCCAAACAGT+TGG | - | chr5_3:20073271-20073290 | None:intergenic | 40.0% | |
| TCGTGAATAATCTGTTCACG+AGG | - | chr5_3:20073342-20073361 | None:intergenic | 40.0% | |
| ! | GTTTAGAGACTAACTGGTCT+GGG | - | chr5_3:20073372-20073391 | None:intergenic | 40.0% |
| GGACAGAGATAGTAGAAACT+GGG | - | chr5_3:20073436-20073455 | None:intergenic | 40.0% | |
| ATATAAAGAAGGGACAGAGG+TGG | + | chr5_3:20073497-20073516 | Msa0804360:intron | 40.0% | |
| GGTTTAGGCAATATGGTCTA+TGG | + | chr5_3:20073577-20073596 | Msa0804360:intron | 40.0% | |
| CAGCGATTTATATCCAACTC+AGG | + | chr5_3:20073608-20073627 | Msa0804360:CDS | 40.0% | |
| GTGTAAACAAGATCCTGAGT+TGG | - | chr5_3:20073624-20073643 | None:intergenic | 40.0% | |
| ! | CAGGATCTTGTTTACACAGT+TGG | + | chr5_3:20073627-20073646 | Msa0804360:CDS | 40.0% |
| !! | GGTTTTATGCTCATGTTCCA+AGG | + | chr5_3:20073673-20073692 | Msa0804360:CDS | 40.0% |
| !! | GATCATGGTGCTGTAATAAG+TGG | + | chr5_3:20073824-20073843 | Msa0804360:CDS | 40.0% |
| ACTGACAAGCATCATAGAGA+GGG | - | chr5_3:20074049-20074068 | None:intergenic | 40.0% | |
| GTCAGTCATGTATCTCTATG+TGG | + | chr5_3:20074063-20074082 | Msa0804360:intron | 40.0% | |
| !! | GTTTTGGATGATGTGTGATC+AGG | + | chr5_3:20074187-20074206 | Msa0804360:intron | 40.0% |
| GAAGATGAACATGAGTGGAC+GGG | + | chr5_3:20068656-20068675 | Msa0804360:CDS | 45.0% | |
| TTGCAACACAATCACGGTTG+AGG | - | chr5_3:20069002-20069021 | None:intergenic | 45.0% | |
| AGATGGTGCAGGGGAATATT+TGG | - | chr5_3:20069364-20069383 | None:intergenic | 45.0% | |
| TATGGACACACACTGTCAGA+TGG | - | chr5_3:20069381-20069400 | None:intergenic | 45.0% | |
| ! | ATTCTGTCACTTCTAAGGGG+TGG | + | chr5_3:20069958-20069977 | Msa0804360:intron | 45.0% |
| CTGCAAGTGGAAACAATGCA+AGG | - | chr5_3:20070257-20070276 | None:intergenic | 45.0% | |
| TCTTACGCTTCTTCTGCAAG+TGG | - | chr5_3:20070270-20070289 | None:intergenic | 45.0% | |
| ! | ACTTGCAGAAGAAGCGTAAG+AGG | + | chr5_3:20070269-20070288 | Msa0804360:intron | 45.0% |
| GTGACTGGAGATTGAGCATT+AGG | - | chr5_3:20070299-20070318 | None:intergenic | 45.0% | |
| TGGCATCATGTCCCTTACTT+TGG | + | chr5_3:20070702-20070721 | Msa0804360:CDS | 45.0% | |
| TCCCTTACTTTGGCAAATCC+TGG | + | chr5_3:20070712-20070731 | Msa0804360:CDS | 45.0% | |
| CCCAGGATTTGCCAAAGTAA+GGG | - | chr5_3:20070716-20070735 | None:intergenic | 45.0% | |
| CCCTTACTTTGGCAAATCCT+GGG | + | chr5_3:20070713-20070732 | Msa0804360:CDS | 45.0% | |
| CCTTACTTTGGCAAATCCTG+GGG | + | chr5_3:20070714-20070733 | Msa0804360:CDS | 45.0% | |
| CTTACTTTGGCAAATCCTGG+GGG | + | chr5_3:20070715-20070734 | Msa0804360:CDS | 45.0% | |
| TTACTTTGGCAAATCCTGGG+GGG | + | chr5_3:20070716-20070735 | Msa0804360:CDS | 45.0% | |
| TTGTTCCATGGACTCTGCAA+TGG | - | chr5_3:20071070-20071089 | None:intergenic | 45.0% | |
| ! | CGACTGAGAAACTTGTTCCA+TGG | - | chr5_3:20071082-20071101 | None:intergenic | 45.0% |
| ! | AAGGGCATGGAGTTCTTCTA+TGG | + | chr5_3:20071139-20071158 | Msa0804360:CDS | 45.0% |
| AGGGCATGGAGTTCTTCTAT+GGG | + | chr5_3:20071140-20071159 | Msa0804360:CDS | 45.0% | |
| TGGGACTAGGATTTCACCTT+TGG | - | chr5_3:20071193-20071212 | None:intergenic | 45.0% | |
| GTTAGTTACCTGGCTTCCTT+GGG | - | chr5_3:20071416-20071435 | None:intergenic | 45.0% | |
| AGTTAGTTACCTGGCTTCCT+TGG | - | chr5_3:20071417-20071436 | None:intergenic | 45.0% | |
| GTTGAAGCTGCATGCATCAT+TGG | - | chr5_3:20071558-20071577 | None:intergenic | 45.0% | |
| !! | CACGGGTTTTTCAGAATCTG+CGG | - | chr5_3:20071921-20071940 | None:intergenic | 45.0% |
| ! | GCAGATTCTGAAAAACCCGT+GGG | + | chr5_3:20071920-20071939 | Msa0804360:CDS | 45.0% |
| ! | CTGAAAAACCCGTGGGTTTT+TGG | + | chr5_3:20071927-20071946 | Msa0804360:CDS | 45.0% |
| CCATTGCGGAACTCATTACT+CGG | - | chr5_3:20071962-20071981 | None:intergenic | 45.0% | |
| AGTAATGAGTTCCGCAATGG+TGG | + | chr5_3:20071962-20071981 | Msa0804360:CDS | 45.0% | |
| GAACTTACAGAGAGGCAAGT+TGG | - | chr5_3:20072022-20072041 | None:intergenic | 45.0% | |
| TTTGTAAGCACCCACTATGC+TGG | + | chr5_3:20072175-20072194 | Msa0804360:CDS | 45.0% | |
| TACGTCTTTGCCAGCATAGT+GGG | - | chr5_3:20072188-20072207 | None:intergenic | 45.0% | |
| GTAGCCATCCAATTCCAAGA+AGG | + | chr5_3:20072205-20072224 | Msa0804360:CDS | 45.0% | |
| CTCTCCTTCTTGGAATTGGA+TGG | - | chr5_3:20072212-20072231 | None:intergenic | 45.0% | |
| ! | GTTAGGGTTCCACGTTGATT+AGG | - | chr5_3:20072489-20072508 | None:intergenic | 45.0% |
| AATCAACGTGGAACCCTAAC+CGG | + | chr5_3:20072489-20072508 | Msa0804360:CDS | 45.0% | |
| GGACTTGTAAATGTCCGGTT+AGG | - | chr5_3:20072506-20072525 | None:intergenic | 45.0% | |
| TTTGCCCCCCCTAATGAATA+TGG | - | chr5_3:20072614-20072633 | None:intergenic | 45.0% | |
| ATCATGGCAGAGAGAAAGCA+AGG | + | chr5_3:20072687-20072706 | Msa0804360:CDS | 45.0% | |
| ! | TGGACTAGAGCAGACCAAAA+TGG | + | chr5_3:20072806-20072825 | Msa0804360:CDS | 45.0% |
| GCAAACAAGTTGTATGACCC+AGG | - | chr5_3:20072857-20072876 | None:intergenic | 45.0% | |
| ! | AACTTGTTTGCATGGGTTCC+TGG | + | chr5_3:20072866-20072885 | Msa0804360:CDS | 45.0% |
| CAAACAGTTGGGCCATTTCT+TGG | - | chr5_3:20073259-20073278 | None:intergenic | 45.0% | |
| CAAGAAATGGCCCAACTGTT+TGG | + | chr5_3:20073257-20073276 | Msa0804360:CDS | 45.0% | |
| GGTTTAGAGACTAACTGGTC+TGG | - | chr5_3:20073373-20073392 | None:intergenic | 45.0% | |
| GGGACAGAGATAGTAGAAAC+TGG | - | chr5_3:20073437-20073456 | None:intergenic | 45.0% | |
| !! | AGCATTAGAGGCACTTGCTA+GGG | - | chr5_3:20073870-20073889 | None:intergenic | 45.0% |
| TACCTGCACTTCAGCATTAG+AGG | - | chr5_3:20073882-20073901 | None:intergenic | 45.0% | |
| GACTGACAAGCATCATAGAG+AGG | - | chr5_3:20074050-20074069 | None:intergenic | 45.0% | |
| GGATGATGTGTGATCAGGTT+TGG | + | chr5_3:20074192-20074211 | Msa0804360:intron | 45.0% | |
| TGTAGTGAAGTAGGGAGGAT+TGG | - | chr5_3:20074234-20074253 | None:intergenic | 45.0% | |
| CTCTTTGTAGTGAAGTAGGG+AGG | - | chr5_3:20074239-20074258 | None:intergenic | 45.0% | |
| ! | GAGATGATAGTGCCATACCA+AGG | + | chr5_3:20074264-20074283 | Msa0804360:CDS | 45.0% |
| ATGGATTCCATGCCTTGGTA+TGG | - | chr5_3:20074279-20074298 | None:intergenic | 45.0% | |
| ATACCAAGGCATGGAATCCA+TGG | + | chr5_3:20074278-20074297 | Msa0804360:CDS | 45.0% | |
| AATCCATGGATTCCATGCCT+TGG | - | chr5_3:20074284-20074303 | None:intergenic | 45.0% | |
| !!! | TTGAATAAATATATTTTTAT+AGG | + | chr5_3:20071285-20071304 | Msa0804360:intron | 5.0% |
| ACACACTGTCAGATGGTGCA+GGG | - | chr5_3:20069374-20069393 | None:intergenic | 50.0% | |
| ! | ATGAGAGAGTGTGTCATGGG+TGG | - | chr5_3:20069679-20069698 | None:intergenic | 50.0% |
| CCCCAGGATTTGCCAAAGTA+AGG | - | chr5_3:20070717-20070736 | None:intergenic | 50.0% | |
| ! | AATCCTGGGGGGTATGTCTT+AGG | + | chr5_3:20070727-20070746 | Msa0804360:CDS | 50.0% |
| ATTCCTAAGACATACCCCCC+AGG | - | chr5_3:20070733-20070752 | None:intergenic | 50.0% | |
| ! | CGCAGATTCTGAAAAACCCG+TGG | + | chr5_3:20071919-20071938 | Msa0804360:CDS | 50.0% |
| CCGAGTAATGAGTTCCGCAA+TGG | + | chr5_3:20071959-20071978 | Msa0804360:CDS | 50.0% | |
| CTACGTCTTTGCCAGCATAG+TGG | - | chr5_3:20072189-20072208 | None:intergenic | 50.0% | |
| ! | AGGGTTCCACGTTGATTAGG+TGG | - | chr5_3:20072486-20072505 | None:intergenic | 50.0% |
| ! | TACATTGGTCTAGCTTGGCC+TGG | + | chr5_3:20072655-20072674 | Msa0804360:CDS | 50.0% |
| ! | ACATTGGTCTAGCTTGGCCT+GGG | + | chr5_3:20072656-20072675 | Msa0804360:CDS | 50.0% |
| GCATGGGTTCCTGGCTATAT+TGG | + | chr5_3:20072875-20072894 | Msa0804360:CDS | 50.0% | |
| ACAGTTGGGCCATTTCTTGG+AGG | - | chr5_3:20073256-20073275 | None:intergenic | 50.0% | |
| GGCCCAACTGTTTGGGAAAT+TGG | + | chr5_3:20073265-20073284 | Msa0804360:CDS | 50.0% | |
| AATTCTCCAGCTGAGCGATC+TGG | - | chr5_3:20073295-20073314 | None:intergenic | 50.0% | |
| ACGAGGTTAGCGTAAGGCTT+TGG | - | chr5_3:20073325-20073344 | None:intergenic | 50.0% | |
| CTGTTCACGAGGTTAGCGTA+AGG | - | chr5_3:20073331-20073350 | None:intergenic | 50.0% | |
| !! | CAGCATTAGAGGCACTTGCT+AGG | - | chr5_3:20073871-20073890 | None:intergenic | 50.0% |
| TGCCTCTAATGCTGAAGTGC+AGG | + | chr5_3:20073877-20073896 | Msa0804360:CDS | 50.0% | |
| GATAGTGCCATACCAAGGCA+TGG | + | chr5_3:20074269-20074288 | Msa0804360:CDS | 50.0% | |
| ! | GTGGACGGGTTCTCTTGTTG+TGG | + | chr5_3:20068670-20068689 | Msa0804360:CDS | 55.0% |
| ! | GACGGGTTCTCTTGTTGTGG+TGG | + | chr5_3:20068673-20068692 | Msa0804360:CDS | 55.0% |
| CACACTGTCAGATGGTGCAG+GGG | - | chr5_3:20069373-20069392 | None:intergenic | 55.0% | |
| CACACACTGTCAGATGGTGC+AGG | - | chr5_3:20069375-20069394 | None:intergenic | 55.0% | |
| GCGATTGCGATCATGTCCGT+TGG | - | chr5_3:20070504-20070523 | None:intergenic | 55.0% | |
| ! | GCTTAACGGGTCCACCATTG+CGG | - | chr5_3:20071976-20071995 | None:intergenic | 55.0% |
| ! | CATTGGTCTAGCTTGGCCTG+GGG | + | chr5_3:20072657-20072676 | Msa0804360:CDS | 55.0% |
| TGCCATGATCCTGCATCCCC+AGG | - | chr5_3:20072676-20072695 | None:intergenic | 60.0% | |
| GGCATTCCAGATCGCTCAGC+TGG | + | chr5_3:20073286-20073305 | Msa0804360:CDS | 60.0% | |
| CTAGCTTGGCCTGGGGATGC+AGG | + | chr5_3:20072664-20072683 | Msa0804360:CDS | 65.0% | |
| GGCCTGGGGATGCAGGATCA+TGG | + | chr5_3:20072671-20072690 | Msa0804360:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 20068654 | 20074460 | 20068654 | ID=Msa0804360;Name=Msa0804360 |
| chr5_3 | mRNA | 20068654 | 20074460 | 20068654 | ID=Msa0804360-mRNA-1;Parent=Msa0804360;Name=Msa0804360-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.13|0.06|1|1|1|16|0|674 |
| chr5_3 | exon | 20068654 | 20068757 | 20068654 | ID=Msa0804360-mRNA-1:exon:8183;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20070277 | 20070343 | 20070277 | ID=Msa0804360-mRNA-1:exon:8184;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20070688 | 20070809 | 20070688 | ID=Msa0804360-mRNA-1:exon:8185;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20070916 | 20070951 | 20070916 | ID=Msa0804360-mRNA-1:exon:8186;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20071076 | 20071195 | 20071076 | ID=Msa0804360-mRNA-1:exon:8187;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20071307 | 20071426 | 20071307 | ID=Msa0804360-mRNA-1:exon:8188;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20071571 | 20071706 | 20071571 | ID=Msa0804360-mRNA-1:exon:8189;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20071857 | 20072033 | 20071857 | ID=Msa0804360-mRNA-1:exon:8190;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20072172 | 20072327 | 20072172 | ID=Msa0804360-mRNA-1:exon:8191;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20072426 | 20072532 | 20072426 | ID=Msa0804360-mRNA-1:exon:8192;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20072624 | 20072708 | 20072624 | ID=Msa0804360-mRNA-1:exon:8193;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20072794 | 20072935 | 20072794 | ID=Msa0804360-mRNA-1:exon:8194;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20073218 | 20073377 | 20073218 | ID=Msa0804360-mRNA-1:exon:8195;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20073578 | 20073694 | 20073578 | ID=Msa0804360-mRNA-1:exon:8196;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20073775 | 20073898 | 20073775 | ID=Msa0804360-mRNA-1:exon:8197;Parent=Msa0804360-mRNA-1 |
| chr5_3 | exon | 20074209 | 20074460 | 20074209 | ID=Msa0804360-mRNA-1:exon:8198;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20068654 | 20068757 | 20068654 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20070277 | 20070343 | 20070277 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20070688 | 20070809 | 20070688 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20070916 | 20070951 | 20070916 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20071076 | 20071195 | 20071076 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20071307 | 20071426 | 20071307 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20071571 | 20071706 | 20071571 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20071857 | 20072033 | 20071857 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20072172 | 20072327 | 20072172 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20072426 | 20072532 | 20072426 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20072624 | 20072708 | 20072624 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20072794 | 20072935 | 20072794 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20073218 | 20073377 | 20073218 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20073578 | 20073694 | 20073578 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20073775 | 20073898 | 20073775 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| chr5_3 | CDS | 20074209 | 20074460 | 20074209 | ID=Msa0804360-mRNA-1:cds;Parent=Msa0804360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
