Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704850 | XP_004504015.1 | 85.149 | 101 | 13 | 1 | 29 | 127 | 6 | 106 | 1.12e-55 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704850 | A0A1S2YG53 | 85.149 | 101 | 13 | 1 | 29 | 127 | 6 | 106 | 5.37e-56 | 179 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032040 | Msa0704850 | 0.816633 | 5.000050e-52 | -8.615850e-47 |
| Msa0039200 | Msa0704850 | 0.814876 | 1.232311e-51 | -8.615850e-47 |
| Msa0040190 | Msa0704850 | 0.809846 | 1.546360e-50 | -8.615850e-47 |
| Msa0086820 | Msa0704850 | 0.815360 | 9.619117e-52 | -8.615850e-47 |
| Msa0704850 | Msa0772210 | 0.801475 | 8.847803e-49 | -8.615850e-47 |
| Msa0704850 | Msa1157160 | 0.832607 | 8.582372e-56 | -8.615850e-47 |
| Msa0704850 | Msa1415120 | 0.815161 | 1.065281e-51 | -8.615850e-47 |
| Msa0133670 | Msa0704850 | 0.813443 | 2.552554e-51 | -8.615850e-47 |
| Msa0133880 | Msa0704850 | 0.820803 | 5.654320e-53 | -8.615850e-47 |
| Msa0134550 | Msa0704850 | 0.815322 | 9.809257e-52 | -8.615850e-47 |
| Msa0184120 | Msa0704850 | 0.820549 | 6.468092e-53 | -8.615850e-47 |
| Msa0184320 | Msa0704850 | -0.802351 | 5.847242e-49 | -8.615850e-47 |
| Msa0484240 | Msa0704850 | -0.803525 | 3.344893e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704850 | MtrunA17_Chr8g0383151 | 80.000 | 110 | 18 | 2 | 22 | 127 | 1 | 110 | 7.65e-57 | 172 |
| Msa0704850 | MtrunA17_Chr3g0129281 | 58.654 | 104 | 39 | 2 | 24 | 127 | 1 | 100 | 5.30e-41 | 131 |
| Msa0704850 | MtrunA17_Chr2g0297141 | 53.704 | 54 | 19 | 1 | 28 | 81 | 1 | 48 | 4.90e-13 | 60.8 |
| Msa0704850 | MtrunA17_Chr2g0297121 | 49.091 | 55 | 22 | 1 | 28 | 82 | 1 | 49 | 1.20e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704850 | AT5G09960.1 | 60.377 | 106 | 35 | 4 | 29 | 127 | 7 | 112 | 2.22e-37 | 123 |
| Msa0704850 | AT5G09960.3 | 60.952 | 105 | 34 | 4 | 30 | 127 | 6 | 110 | 2.66e-37 | 123 |
| Msa0704850 | AT5G64850.1 | 53.271 | 107 | 41 | 2 | 30 | 127 | 8 | 114 | 1.17e-30 | 106 |
| Msa0704850 | AT5G09960.2 | 57.143 | 84 | 31 | 3 | 49 | 127 | 1 | 84 | 1.30e-25 | 92.8 |
| Msa0704850 | AT5G19473.1 | 38.614 | 101 | 51 | 3 | 29 | 126 | 5 | 97 | 7.77e-18 | 73.2 |
| Msa0704850 | AT5G19473.2 | 38.835 | 103 | 52 | 3 | 27 | 126 | 38 | 132 | 4.61e-17 | 72.4 |
Find 38 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGTCTTCAAGCTTAA+AGG | 0.193201 | 4_4:+77371134 | Msa0704850:CDS |
| GCAGCTTCCGGTTCGGTTCT+TGG | 0.235551 | 4_4:+77370855 | Msa0704850:CDS |
| TCGTAGATTTCTGAAGATTC+TGG | 0.245371 | 4_4:+77373375 | Msa0704850:three_prime_UTR |
| GGTTATCAGTACCACAGTTT+GGG | 0.313542 | 4_4:+77372404 | Msa0704850:CDS |
| AGTACCACAGTTTGGGGATT+GGG | 0.346571 | 4_4:+77372411 | Msa0704850:CDS |
| GGGGAGTTATGCTTGTCCTT+TGG | 0.390303 | 4_4:+77373402 | Msa0704850:three_prime_UTR |
| TGGTTATCAGTACCACAGTT+TGG | 0.392687 | 4_4:+77372403 | Msa0704850:CDS |
| CAATGATGAAGAGTTCAATA+TGG | 0.395733 | 4_4:+77372531 | Msa0704850:CDS |
| CAGTACCACAGTTTGGGGAT+TGG | 0.404887 | 4_4:+77372410 | Msa0704850:CDS |
| ATATCGATCTACGTAATTAG+TGG | 0.414299 | 4_4:+77373560 | Msa0704850:three_prime_UTR |
| GAGAAGTCAAGTGAGTAATC+AGG | 0.438678 | 4_4:-77372451 | None:intergenic |
| TGCGGTAGCAGCTTCCGGTT+CGG | 0.449606 | 4_4:+77370848 | Msa0704850:CDS |
| ATTTCTGAAGATTCTGGATA+GGG | 0.457000 | 4_4:+77373381 | Msa0704850:three_prime_UTR |
| GCTGACAGTGTTAGCACTGC+TGG | 0.457820 | 4_4:-77372563 | None:intergenic |
| AGCGAGGGGTGTGTTGTTGT+TGG | 0.478532 | 4_4:-77372594 | None:intergenic |
| GATTTCTGAAGATTCTGGAT+AGG | 0.504628 | 4_4:+77373380 | Msa0704850:three_prime_UTR |
| AAAACCACCAAGAACCGAAC+CGG | 0.508766 | 4_4:-77370862 | None:intergenic |
| ATCTACGTAATTAGTGGTAA+AGG | 0.518391 | 4_4:+77373566 | Msa0704850:three_prime_UTR |
| AATATTTCAAGAGCAAGTCT+TGG | 0.521992 | 4_4:+77372508 | Msa0704850:CDS |
| GTAATCATGTAATAGCTTCA+AGG | 0.528099 | 4_4:+77373591 | Msa0704850:three_prime_UTR |
| TTGGGGATTGGGATCAGAAG+GGG | 0.561605 | 4_4:+77372422 | Msa0704850:CDS |
| GCTTCCGGTTCGGTTCTTGG+TGG | 0.564763 | 4_4:+77370858 | Msa0704850:CDS |
| GTTTGGGGATTGGGATCAGA+AGG | 0.575243 | 4_4:+77372420 | Msa0704850:CDS |
| CAAAATTATCACATAATGAG+AGG | 0.584440 | 4_4:-77373445 | None:intergenic |
| TTCTGAAGATTCTGGATAGG+GGG | 0.587009 | 4_4:+77373383 | Msa0704850:three_prime_UTR |
| ATCTAAGCAATTATCACCAA+AGG | 0.592047 | 4_4:-77373418 | None:intergenic |
| TTTCTGAAGATTCTGGATAG+GGG | 0.609867 | 4_4:+77373382 | Msa0704850:three_prime_UTR |
| CACAGCAGTTGAAGTAGCTG+AGG | 0.611146 | 4_4:-77373314 | None:intergenic |
| ATCTTCAGAAATCTACGAGG+AGG | 0.618908 | 4_4:-77373370 | None:intergenic |
| TTTGGGGATTGGGATCAGAA+GGG | 0.623217 | 4_4:+77372421 | Msa0704850:CDS |
| GAGTGTGTTTGATGATAGCG+AGG | 0.627338 | 4_4:-77372610 | None:intergenic |
| GTTATCAGTACCACAGTTTG+GGG | 0.627997 | 4_4:+77372405 | Msa0704850:CDS |
| TCTTCAGAAATCTACGAGGA+GGG | 0.635581 | 4_4:-77373369 | None:intergenic |
| AGTGCTAACACTGTCAGCAG+CGG | 0.667891 | 4_4:+77372568 | Msa0704850:CDS |
| AGTGTGTTTGATGATAGCGA+GGG | 0.693478 | 4_4:-77372609 | None:intergenic |
| TGATCCCAATCCCCAAACTG+TGG | 0.704406 | 4_4:-77372415 | None:intergenic |
| GTGTGTTTGATGATAGCGAG+GGG | 0.723670 | 4_4:-77372608 | None:intergenic |
| AGAATCTTCAGAAATCTACG+AGG | 0.812350 | 4_4:-77373373 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCAAATAAAAAGATTTTA+AGG | + | chr4_4:77371400-77371419 | Msa0704850:intron | 10.0% |
| !!! | ATTAAGCAATTTTAAAAATT+TGG | + | chr4_4:77371487-77371506 | Msa0704850:intron | 10.0% |
| !!! | AATATTTTTTTAACAACTTT+GGG | + | chr4_4:77371929-77371948 | Msa0704850:intron | 10.0% |
| !! | TGTTAAAATATATAGAAAAA+TGG | + | chr4_4:77372376-77372395 | Msa0704850:intron | 10.0% |
| !! | TTATATATATGAAAAATGAA+TGG | + | chr4_4:77372859-77372878 | Msa0704850:intron | 10.0% |
| !!! | TTAGTAATATTTTTTTTTCA+TGG | + | chr4_4:77373274-77373293 | Msa0704850:intron | 10.0% |
| !! | TATATAATGACTTCATATAA+TGG | + | chr4_4:77370576-77370595 | Msa0704850:intron | 15.0% |
| !!! | TTTATTTTTTTGATGAATGT+TGG | + | chr4_4:77371269-77371288 | Msa0704850:intron | 15.0% |
| !! | AACTATAGAGTATAAATATA+CGG | - | chr4_4:77371745-77371764 | None:intergenic | 15.0% |
| !!! | CAATATTTTTTTAACAACTT+TGG | + | chr4_4:77371928-77371947 | Msa0704850:intron | 15.0% |
| !!! | TATAATATTAGCCTTATAAT+GGG | - | chr4_4:77372343-77372362 | None:intergenic | 15.0% |
| !!! | ATATAATATTAGCCTTATAA+TGG | - | chr4_4:77372344-77372363 | None:intergenic | 15.0% |
| !! | TAAAATATATAGAAAAATGG+AGG | + | chr4_4:77372379-77372398 | Msa0704850:intron | 15.0% |
| !! | TTTGGACAAAAAATATAAAA+TGG | + | chr4_4:77372739-77372758 | Msa0704850:intron | 15.0% |
| !! | ATATAAAATGGAATAAACTT+AGG | + | chr4_4:77372751-77372770 | Msa0704850:intron | 15.0% |
| !!! | CATCAAATTAGTATTTTAAT+GGG | - | chr4_4:77373112-77373131 | None:intergenic | 15.0% |
| !! | TTGAAATGAAAAAAAAACTT+TGG | + | chr4_4:77373482-77373501 | Msa0704850:three_prime_UTR | 15.0% |
| !! | GAAGTCATTATATAGTAAAA+AGG | - | chr4_4:77370570-77370589 | None:intergenic | 20.0% |
| !!! | TTCGTAAATTGATAATTTCT+TGG | + | chr4_4:77370678-77370697 | Msa0704850:intron | 20.0% |
| !! | NAGAATTTAATTCCAACAAT+TGG | - | chr4_4:77371605-77371624 | None:intergenic | 20.0% |
| !! | GTAATTAAAAAATGAACCAA+TGG | - | chr4_4:77371774-77371793 | None:intergenic | 20.0% |
| !! | GTCACATCATTATTTATAAA+TGG | + | chr4_4:77371810-77371829 | Msa0704850:intron | 20.0% |
| !!! | AGACATTACTATATTCTTTT+AGG | + | chr4_4:77372686-77372705 | Msa0704850:intron | 20.0% |
| !! | ATAAAAGAACATTAAGACTT+TGG | + | chr4_4:77372721-77372740 | Msa0704850:intron | 20.0% |
| !! | AATGAATGGATATATATTAG+TGG | + | chr4_4:77372873-77372892 | Msa0704850:intron | 20.0% |
| !! | ATGAATGGATATATATTAGT+GGG | + | chr4_4:77372874-77372893 | Msa0704850:intron | 20.0% |
| !!! | ACATTTTTTTCATAGATAAG+AGG | + | chr4_4:77373023-77373042 | Msa0704850:intron | 20.0% |
| !!! | CATTTTTTTCATAGATAAGA+GGG | + | chr4_4:77373024-77373043 | Msa0704850:intron | 20.0% |
| !!! | GCATCAAATTAGTATTTTAA+TGG | - | chr4_4:77373113-77373132 | None:intergenic | 20.0% |
| !! | ATATTACTACTTCAGATTTA+CGG | - | chr4_4:77373192-77373211 | None:intergenic | 20.0% |
| !!! | CAGACATTTATTTTCGTATT+AGG | - | chr4_4:77370624-77370643 | None:intergenic | 25.0% |
| ! | AATACGAAAATAAATGTCTG+TGG | + | chr4_4:77370624-77370643 | Msa0704850:intron | 25.0% |
| !! | AATTACCATTTTACCCTTAT+TGG | + | chr4_4:77370648-77370667 | Msa0704850:intron | 25.0% |
| !! | ATTACCATTTTACCCTTATT+GGG | + | chr4_4:77370649-77370668 | Msa0704850:intron | 25.0% |
| !! | AATTGATAATTTCTTGGCTT+TGG | + | chr4_4:77370684-77370703 | Msa0704850:intron | 25.0% |
| ! | ACATGAATATAAGTAGTAGT+GGG | - | chr4_4:77370795-77370814 | None:intergenic | 25.0% |
| ! | AACATGAATATAAGTAGTAG+TGG | - | chr4_4:77370796-77370815 | None:intergenic | 25.0% |
| !!! | TAAGGTTTGTGTTGTTTAAT+CGG | + | chr4_4:77370884-77370903 | Msa0704850:intron | 25.0% |
| ! | CCAAAGAATCTAACAAATAA+AGG | - | chr4_4:77371020-77371039 | None:intergenic | 25.0% |
| !! | CCTTTATTTGTTAGATTCTT+TGG | + | chr4_4:77371017-77371036 | Msa0704850:intron | 25.0% |
| !!! | TTCTGTTTTTTGTGTTTTGT+TGG | + | chr4_4:77371057-77371076 | Msa0704850:intron | 25.0% |
| !!! | TCTGTTTTTTGTGTTTTGTT+GGG | + | chr4_4:77371058-77371077 | Msa0704850:intron | 25.0% |
| !!! | AAGCTTTGATTAAGCTATTT+TGG | + | chr4_4:77371343-77371362 | Msa0704850:intron | 25.0% |
| ! | TGATCAATTGATGTTAAAGA+TGG | + | chr4_4:77371441-77371460 | Msa0704850:intron | 25.0% |
| ! | CTCTATAGTTTATATACCAT+TGG | + | chr4_4:77371755-77371774 | Msa0704850:intron | 25.0% |
| !! | ACTTCTTTTCCATATTCTTT+TGG | + | chr4_4:77371956-77371975 | Msa0704850:intron | 25.0% |
| !! | CTTCTTTTCCATATTCTTTT+GGG | + | chr4_4:77371957-77371976 | Msa0704850:intron | 25.0% |
| !! | TATTTTGTTGCATAAAGTCA+CGG | - | chr4_4:77372213-77372232 | None:intergenic | 25.0% |
| ! | TAGAAAATGATCCCATTATA+AGG | + | chr4_4:77372329-77372348 | Msa0704850:intron | 25.0% |
| ! | ATATATAGAAAAATGGAGGT+TGG | + | chr4_4:77372383-77372402 | Msa0704850:intron | 25.0% |
| ! | ACTTGACTTCTCAAAAATAA+GGG | + | chr4_4:77372462-77372481 | Msa0704850:CDS | 25.0% |
| !!! | CTTCTCAAGCTTTATTATAA+TGG | + | chr4_4:77372651-77372670 | Msa0704850:intron | 25.0% |
| ! | ATGGAATAAACTTAGGAATA+TGG | + | chr4_4:77372758-77372777 | Msa0704850:intron | 25.0% |
| ! | GAAAGAGATGTAAAATGATA+TGG | + | chr4_4:77372915-77372934 | Msa0704850:intron | 25.0% |
| ! | TTATCATGTAGATAGATACT+AGG | + | chr4_4:77372952-77372971 | Msa0704850:intron | 25.0% |
| ! | CAATCCATTATAAAAACTGT+TGG | + | chr4_4:77373047-77373066 | Msa0704850:intron | 25.0% |
| !! | ATGACCAACAGTTTTTATAA+TGG | - | chr4_4:77373054-77373073 | None:intergenic | 25.0% |
| ! | TATTACTACTTCAGATTTAC+GGG | - | chr4_4:77373191-77373210 | None:intergenic | 25.0% |
| ! | CAAAATTATCACATAATGAG+AGG | - | chr4_4:77373448-77373467 | None:intergenic | 25.0% |
| ! | TTACCATTTTACCCTTATTG+GGG | + | chr4_4:77370650-77370669 | Msa0704850:intron | 30.0% |
| TGAATAGTAGTAGTAGTAGT+GGG | - | chr4_4:77370763-77370782 | None:intergenic | 30.0% | |
| ATGAATAGTAGTAGTAGTAG+TGG | - | chr4_4:77370764-77370783 | None:intergenic | 30.0% | |
| !! | GTTGATTTTGTTCTAAGTTC+TGG | + | chr4_4:77370933-77370952 | Msa0704850:intron | 30.0% |
| TTCTGATTACTTCTTGATGA+TGG | + | chr4_4:77370974-77370993 | Msa0704850:intron | 30.0% | |
| !! | TGTTTTTAATGTTCTTCTGC+AGG | + | chr4_4:77371110-77371129 | Msa0704850:intron | 30.0% |
| TTCTTTGTCTTCAAGCTTAA+AGG | + | chr4_4:77371134-77371153 | Msa0704850:CDS | 30.0% | |
| ! | TGCTTATATCTAAGTTTGCT+TGG | + | chr4_4:77371545-77371564 | Msa0704850:intron | 30.0% |
| TAGAGTATAAAGCCAATTGT+TGG | + | chr4_4:77371590-77371609 | Msa0704850:intron | 30.0% | |
| AGAGTATAAATATACGGTGT+TGG | - | chr4_4:77371739-77371758 | None:intergenic | 30.0% | |
| ATGATGTGACTATAAAAGAG+AGG | - | chr4_4:77371800-77371819 | None:intergenic | 30.0% | |
| ! | GTCAAATAGTTGTTACCTTT+TGG | + | chr4_4:77371865-77371884 | Msa0704850:intron | 30.0% |
| !! | GTGTTATTTGAACATCCAAA+AGG | - | chr4_4:77371883-77371902 | None:intergenic | 30.0% |
| GTATTTGTCCCAAAAGAATA+TGG | - | chr4_4:77371968-77371987 | None:intergenic | 30.0% | |
| CTCATAAGTACATTATACAC+CGG | + | chr4_4:77372130-77372149 | Msa0704850:intron | 30.0% | |
| TCATAAGTACATTATACACC+GGG | + | chr4_4:77372131-77372150 | Msa0704850:intron | 30.0% | |
| GAGTTCAAATGTTCTACATT+TGG | + | chr4_4:77372158-77372177 | Msa0704850:intron | 30.0% | |
| !!! | AAAGTCACGGTTTTTTTGAA+GGG | - | chr4_4:77372200-77372219 | None:intergenic | 30.0% |
| !!! | TAAAGTCACGGTTTTTTTGA+AGG | - | chr4_4:77372201-77372220 | None:intergenic | 30.0% |
| CACTTGACTTCTCAAAAATA+AGG | + | chr4_4:77372461-77372480 | Msa0704850:CDS | 30.0% | |
| TCTCAAAAATAAGGGAAACA+AGG | + | chr4_4:77372470-77372489 | Msa0704850:CDS | 30.0% | |
| AATATTTCAAGAGCAAGTCT+TGG | + | chr4_4:77372508-77372527 | Msa0704850:CDS | 30.0% | |
| CAATGATGAAGAGTTCAATA+TGG | + | chr4_4:77372531-77372550 | Msa0704850:CDS | 30.0% | |
| GAGAAGAATAATCTTACAGT+TGG | - | chr4_4:77372637-77372656 | None:intergenic | 30.0% | |
| TACATTGAAGAATAATGTCG+AGG | + | chr4_4:77372785-77372804 | Msa0704850:intron | 30.0% | |
| !!! | TTTTTGGCTGGAAAAATATG+TGG | - | chr4_4:77372819-77372838 | None:intergenic | 30.0% |
| TCCAGCCAAAAAATATAAGA+AGG | + | chr4_4:77372827-77372846 | Msa0704850:intron | 30.0% | |
| !!! | GCTTGCCTTCTTATATTTTT+TGG | - | chr4_4:77372835-77372854 | None:intergenic | 30.0% |
| !! | TAATGGGTTTAACCACATAA+AGG | - | chr4_4:77373096-77373115 | None:intergenic | 30.0% |
| CTGCAAAATAGATTGATCTT+AGG | + | chr4_4:77373153-77373172 | Msa0704850:intron | 30.0% | |
| AAATATGAGTGCATTACGTA+TGG | + | chr4_4:77373220-77373239 | Msa0704850:intron | 30.0% | |
| !!! | TTTTTTTTTCATGGCAGACA+AGG | + | chr4_4:77373283-77373302 | Msa0704850:intron | 30.0% |
| TGTACATGACCATAAAAATC+AGG | - | chr4_4:77373346-77373365 | None:intergenic | 30.0% | |
| ! | ATTTCTGAAGATTCTGGATA+GGG | + | chr4_4:77373381-77373400 | Msa0704850:three_prime_UTR | 30.0% |
| ATCTAAGCAATTATCACCAA+AGG | - | chr4_4:77373421-77373440 | None:intergenic | 30.0% | |
| ATATCGATCTACGTAATTAG+TGG | + | chr4_4:77373560-77373579 | Msa0704850:three_prime_UTR | 30.0% | |
| ATCTACGTAATTAGTGGTAA+AGG | + | chr4_4:77373566-77373585 | Msa0704850:three_prime_UTR | 30.0% | |
| ! | TACCATTTTACCCTTATTGG+GGG | + | chr4_4:77370651-77370670 | Msa0704850:intron | 35.0% |
| TACGAAAATACCCCCAATAA+GGG | - | chr4_4:77370664-77370683 | None:intergenic | 35.0% | |
| TTACGAAAATACCCCCAATA+AGG | - | chr4_4:77370665-77370684 | None:intergenic | 35.0% | |
| !! | CTTGGCTTTGGCTATATATA+TGG | + | chr4_4:77370696-77370715 | Msa0704850:intron | 35.0% |
| GTGGGAATGAATGAAATAGT+GGG | - | chr4_4:77370745-77370764 | None:intergenic | 35.0% | |
| AGTGGGAATGAATGAAATAG+TGG | - | chr4_4:77370746-77370765 | None:intergenic | 35.0% | |
| !!! | TCCGGTTCTTTTTTCTTTTG+CGG | + | chr4_4:77370830-77370849 | Msa0704850:CDS | 35.0% |
| ACCGCAAAAGAAAAAAGAAC+CGG | - | chr4_4:77370834-77370853 | None:intergenic | 35.0% | |
| ATTGATGTTAAAGATGGCCA+TGG | + | chr4_4:77371447-77371466 | Msa0704850:intron | 35.0% | |
| !! | TCTAAGTTTGCTTGGTTTTC+TGG | + | chr4_4:77371553-77371572 | Msa0704850:intron | 35.0% |
| !!! | GCCTTCTTATATTTTTTGGC+TGG | - | chr4_4:77372831-77372850 | None:intergenic | 35.0% |
| TCTTTCAAACCAGTGAATCT+GGG | - | chr4_4:77372901-77372920 | None:intergenic | 35.0% | |
| ! | GTGTGAAAGCCTGATTTTTA+TGG | + | chr4_4:77373334-77373353 | Msa0704850:exon | 35.0% |
| AGAATCTTCAGAAATCTACG+AGG | - | chr4_4:77373376-77373395 | None:intergenic | 35.0% | |
| ! | TCGTAGATTTCTGAAGATTC+TGG | + | chr4_4:77373375-77373394 | Msa0704850:three_prime_UTR | 35.0% |
| ! | GATTTCTGAAGATTCTGGAT+AGG | + | chr4_4:77373380-77373399 | Msa0704850:three_prime_UTR | 35.0% |
| ! | TTTCTGAAGATTCTGGATAG+GGG | + | chr4_4:77373382-77373401 | Msa0704850:three_prime_UTR | 35.0% |
| TACCCCCAATAAGGGTAAAA+TGG | - | chr4_4:77370656-77370675 | None:intergenic | 40.0% | |
| TGTTTCCATTCAGTTCAGTC+CGG | + | chr4_4:77370812-77370831 | Msa0704850:intron | 40.0% | |
| !! | TTCGGTTCTTGGTGGTTTTA+AGG | + | chr4_4:77370866-77370885 | Msa0704850:CDS | 40.0% |
| CATCCAGCAAATCATATCCA+TGG | - | chr4_4:77371467-77371486 | None:intergenic | 40.0% | |
| TGGTTATCAGTACCACAGTT+TGG | + | chr4_4:77372403-77372422 | Msa0704850:CDS | 40.0% | |
| GGTTATCAGTACCACAGTTT+GGG | + | chr4_4:77372404-77372423 | Msa0704850:CDS | 40.0% | |
| GTTATCAGTACCACAGTTTG+GGG | + | chr4_4:77372405-77372424 | Msa0704850:CDS | 40.0% | |
| GAGAAGTCAAGTGAGTAATC+AGG | - | chr4_4:77372454-77372473 | None:intergenic | 40.0% | |
| ! | AGTGTGTTTGATGATAGCGA+GGG | - | chr4_4:77372612-77372631 | None:intergenic | 40.0% |
| CTCTTTCAAACCAGTGAATC+TGG | - | chr4_4:77372902-77372921 | None:intergenic | 40.0% | |
| ! | TCTAGTTGATGCACATGCAA+TGG | + | chr4_4:77372986-77373005 | Msa0704850:intron | 40.0% |
| AACTGTTGGTCATGTGTCAT+TGG | + | chr4_4:77373061-77373080 | Msa0704850:intron | 40.0% | |
| ! | ACTGTTGGTCATGTGTCATT+GGG | + | chr4_4:77373062-77373081 | Msa0704850:intron | 40.0% |
| TACGTATGGCACGAAATCTT+TGG | + | chr4_4:77373234-77373253 | Msa0704850:intron | 40.0% | |
| TCTTCAGAAATCTACGAGGA+GGG | - | chr4_4:77373372-77373391 | None:intergenic | 40.0% | |
| ATCTTCAGAAATCTACGAGG+AGG | - | chr4_4:77373373-77373392 | None:intergenic | 40.0% | |
| ! | TTCTGAAGATTCTGGATAGG+GGG | + | chr4_4:77373383-77373402 | Msa0704850:three_prime_UTR | 40.0% |
| AAGAACCGGACTGAACTGAA+TGG | - | chr4_4:77370820-77370839 | None:intergenic | 45.0% | |
| AAAACCACCAAGAACCGAAC+CGG | - | chr4_4:77370865-77370884 | None:intergenic | 45.0% | |
| ! | TGGCCATGGATATGATTTGC+TGG | + | chr4_4:77371461-77371480 | Msa0704850:intron | 45.0% |
| GAACATTTGAACTCACGACC+CGG | - | chr4_4:77372152-77372171 | None:intergenic | 45.0% | |
| AGTACCACAGTTTGGGGATT+GGG | + | chr4_4:77372411-77372430 | Msa0704850:CDS | 45.0% | |
| TTTGGGGATTGGGATCAGAA+GGG | + | chr4_4:77372421-77372440 | Msa0704850:CDS | 45.0% | |
| ! | GTGTGTTTGATGATAGCGAG+GGG | - | chr4_4:77372611-77372630 | None:intergenic | 45.0% |
| ! | GAGTGTGTTTGATGATAGCG+AGG | - | chr4_4:77372613-77372632 | None:intergenic | 45.0% |
| ! | CTGTTGGTCATGTGTCATTG+GGG | + | chr4_4:77373063-77373082 | Msa0704850:intron | 45.0% |
| TGGGGATATGCTCCTTTATG+TGG | + | chr4_4:77373081-77373100 | Msa0704850:intron | 45.0% | |
| !! | TTAAAAAAAATCTTAAAAAA+AGG | - | chr4_4:77371193-77371212 | None:intergenic | 5.0% |
| !!! | TATTCTTTTTTTTTTTTTTT+TGG | + | chr4_4:77372280-77372299 | Msa0704850:intron | 5.0% |
| ! | TCTTTTGCGGTAGCAGCTTC+CGG | + | chr4_4:77370843-77370862 | Msa0704850:CDS | 50.0% |
| CAGTACCACAGTTTGGGGAT+TGG | + | chr4_4:77372410-77372429 | Msa0704850:CDS | 50.0% | |
| TGATCCCAATCCCCAAACTG+TGG | - | chr4_4:77372418-77372437 | None:intergenic | 50.0% | |
| GTTTGGGGATTGGGATCAGA+AGG | + | chr4_4:77372420-77372439 | Msa0704850:CDS | 50.0% | |
| TTGGGGATTGGGATCAGAAG+GGG | + | chr4_4:77372422-77372441 | Msa0704850:CDS | 50.0% | |
| AGTGCTAACACTGTCAGCAG+CGG | + | chr4_4:77372568-77372587 | Msa0704850:CDS | 50.0% | |
| TTAGTGGGACCCAGATTCAC+TGG | + | chr4_4:77372889-77372908 | Msa0704850:intron | 50.0% | |
| CACAGCAGTTGAAGTAGCTG+AGG | - | chr4_4:77373317-77373336 | None:intergenic | 50.0% | |
| GGGGAGTTATGCTTGTCCTT+TGG | + | chr4_4:77373402-77373421 | Msa0704850:three_prime_UTR | 50.0% | |
| GCTGACAGTGTTAGCACTGC+TGG | - | chr4_4:77372566-77372585 | None:intergenic | 55.0% | |
| ! | AGCGAGGGGTGTGTTGTTGT+TGG | - | chr4_4:77372597-77372616 | None:intergenic | 55.0% |
| TGCGGTAGCAGCTTCCGGTT+CGG | + | chr4_4:77370848-77370867 | Msa0704850:CDS | 60.0% | |
| !! | GCAGCTTCCGGTTCGGTTCT+TGG | + | chr4_4:77370855-77370874 | Msa0704850:CDS | 60.0% |
| !! | GCTTCCGGTTCGGTTCTTGG+TGG | + | chr4_4:77370858-77370877 | Msa0704850:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 77370551 | 77373610 | 77370551 | ID=Msa0704850;Name=Msa0704850 |
| chr4_4 | mRNA | 77370551 | 77373610 | 77370551 | ID=Msa0704850-mRNA-1;Parent=Msa0704850;Name=Msa0704850-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.25|0.2|0.4|0.5|0.4|5|263|127 |
| chr4_4 | exon | 77370551 | 77370555 | 77370551 | ID=Msa0704850-mRNA-1:exon:24470;Parent=Msa0704850-mRNA-1 |
| chr4_4 | exon | 77370830 | 77370887 | 77370830 | ID=Msa0704850-mRNA-1:exon:24471;Parent=Msa0704850-mRNA-1 |
| chr4_4 | exon | 77371132 | 77371155 | 77371132 | ID=Msa0704850-mRNA-1:exon:24472;Parent=Msa0704850-mRNA-1 |
| chr4_4 | exon | 77372391 | 77372639 | 77372391 | ID=Msa0704850-mRNA-1:exon:24473;Parent=Msa0704850-mRNA-1 |
| chr4_4 | exon | 77373300 | 77373610 | 77373300 | ID=Msa0704850-mRNA-1:exon:24474;Parent=Msa0704850-mRNA-1 |
| chr4_4 | CDS | 77370551 | 77370555 | 77370551 | ID=Msa0704850-mRNA-1:cds;Parent=Msa0704850-mRNA-1 |
| chr4_4 | CDS | 77370830 | 77370887 | 77370830 | ID=Msa0704850-mRNA-1:cds;Parent=Msa0704850-mRNA-1 |
| chr4_4 | CDS | 77371132 | 77371155 | 77371132 | ID=Msa0704850-mRNA-1:cds;Parent=Msa0704850-mRNA-1 |
| chr4_4 | CDS | 77372391 | 77372639 | 77372391 | ID=Msa0704850-mRNA-1:cds;Parent=Msa0704850-mRNA-1 |
| chr4_4 | CDS | 77373300 | 77373347 | 77373300 | ID=Msa0704850-mRNA-1:cds;Parent=Msa0704850-mRNA-1 |
| chr4_4 | three_prime_UTR | 77373348 | 77373610 | 77373348 | ID=Msa0704850-mRNA-1:three_prime_utr;Parent=Msa0704850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
