AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0772210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0772210 MtrunA17_Chr5g0409731 98.667 75 1 0 1 75 1 75 1.77e-50 160
Msa0772210 MtrunA17_Chr8g0356501 64.935 77 23 2 1 75 13 87 1.08e-28 105
Msa0772210 MtrunA17_Chr2g0310011 71.212 66 17 1 10 75 22 85 1.10e-28 105
Msa0772210 MtrunA17_Chr1g0197171 77.586 58 13 0 18 75 37 94 4.00e-28 102
Msa0772210 MtrunA17_Chr2g0290991 65.714 70 23 1 7 75 20 89 4.03e-28 103
Msa0772210 MtrunA17_Chr7g0254981 70.690 58 17 0 25 82 50 107 3.74e-25 94.7
Msa0772210 MtrunA17_Chr6g0461641 68.966 58 18 0 18 75 35 92 1.27e-24 94.7
Msa0772210 MtrunA17_Chr2g0321461 67.241 58 19 0 18 75 38 95 3.30e-24 93.6
Msa0772210 MtrunA17_Chr4g0042451 63.793 58 21 0 18 75 10 67 1.83e-23 91.3
Msa0772210 MtrunA17_Chr5g0417521 66.071 56 19 0 20 75 10 65 3.38e-23 90.5
Msa0772210 MtrunA17_Chr2g0291021 67.241 58 19 0 25 82 49 106 5.68e-23 89.7
Msa0772210 MtrunA17_Chr1g0190301 60.345 58 23 0 18 75 168 225 8.03e-20 81.6
Msa0772210 MtrunA17_Chr7g0261911 64.706 51 18 0 25 75 262 312 1.25e-19 81.6
Msa0772210 MtrunA17_Chr2g0288601 59.677 62 25 0 16 77 62 123 2.12e-19 76.3
Msa0772210 MtrunA17_Chr7g0274471 64.706 51 18 0 25 75 218 268 3.35e-19 80.1
Msa0772210 MtrunA17_Chr1g0175091 62.745 51 19 0 25 75 258 308 6.41e-19 79.3
Msa0772210 MtrunA17_Chr1g0210911 53.947 76 32 1 1 76 1 73 1.44e-18 77.8
Msa0772210 MtrunA17_Chr7g0258551 58.824 51 21 0 25 75 212 262 2.01e-18 77.8
Msa0772210 MtrunA17_Chr7g0243081 61.818 55 21 0 22 76 68 122 2.32e-18 77.4
Msa0772210 MtrunA17_Chr1g0162931 56.923 65 28 0 12 76 5 69 2.39e-18 76.6
Msa0772210 MtrunA17_Chr8g0366281 68.627 51 16 0 26 76 174 224 4.25e-18 76.6
Msa0772210 MtrunA17_Chr6g0479431 66.667 51 17 0 26 76 203 253 6.27e-18 76.3
Msa0772210 MtrunA17_Chr5g0410741 68.627 51 16 0 26 76 220 270 3.09e-17 74.7
Msa0772210 MtrunA17_Chr3g0095611 45.205 73 33 1 4 76 5 70 4.65e-17 72.0
Msa0772210 MtrunA17_Chr8g0379121 50.000 70 28 1 7 76 100 162 5.44e-17 73.9
Msa0772210 MtrunA17_Chr1g0154261 66.667 51 17 0 26 76 127 177 5.87e-17 73.2
Msa0772210 MtrunA17_Chr2g0320231 50.000 74 31 1 3 76 81 148 6.34e-17 73.6
Msa0772210 MtrunA17_Chr3g0109981 66.667 51 17 0 26 76 275 325 9.32e-17 73.2
Msa0772210 MtrunA17_Chr1g0175081 57.143 49 21 0 27 75 24 72 1.11e-16 68.6
Msa0772210 MtrunA17_Chr2g0283951 48.611 72 37 0 4 75 68 139 3.00e-16 71.6
Msa0772210 MtrunA17_Chr1g0175071 51.786 56 27 0 20 75 172 227 2.10e-15 68.9
Msa0772210 MtrunA17_Chr7g0242521 57.407 54 20 1 25 75 13 66 7.67e-15 66.6
Msa0772210 MtrunA17_Chr7g0258531 47.541 61 29 1 25 85 213 270 3.59e-13 63.2
Msa0772210 MtrunA17_Chr4g0074421 51.923 52 24 1 25 76 133 183 2.77e-11 56.6
Msa0772210 MtrunA17_Chr1g0161431 50.980 51 24 1 25 75 200 249 6.18e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0772210 AT5G45580.2 79.730 74 14 1 2 75 1 73 1.27e-34 119
Msa0772210 AT5G45580.1 92.857 56 4 0 20 75 2 57 1.50e-32 114
Msa0772210 AT3G24120.2 79.310 58 12 0 18 75 34 91 3.35e-30 108
Msa0772210 AT3G24120.1 79.310 58 12 0 18 75 34 91 3.45e-30 108
Msa0772210 AT4G13640.1 77.586 58 13 0 18 75 30 87 3.59e-30 108
Msa0772210 AT4G13640.2 77.586 58 13 0 18 75 30 87 3.80e-30 108
Msa0772210 AT3G12730.1 66.667 75 23 1 1 75 1 73 4.39e-30 106
Msa0772210 AT1G79430.2 69.697 66 18 1 10 75 21 84 2.08e-28 104
Msa0772210 AT3G04030.1 59.420 69 26 1 7 75 29 95 6.53e-24 93.2
Msa0772210 AT3G04030.3 59.420 69 26 1 7 75 29 95 7.06e-24 93.2
Msa0772210 AT5G18240.2 60.870 69 25 1 7 75 29 95 1.52e-23 92.4
Msa0772210 AT5G18240.3 60.870 69 25 1 7 75 29 95 1.52e-23 92.4
Msa0772210 AT5G18240.1 60.870 69 25 1 7 75 29 95 1.59e-23 92.4
Msa0772210 AT5G18240.4 60.870 69 25 1 7 75 29 95 1.59e-23 92.4
Msa0772210 AT5G18240.5 60.870 69 25 1 7 75 29 95 1.77e-23 92.0
Msa0772210 AT2G01060.1 67.241 58 19 0 25 82 15 72 5.43e-23 89.4
Msa0772210 AT1G69580.1 60.345 58 23 0 18 75 27 84 4.90e-22 87.4
Msa0772210 AT1G69580.2 60.345 58 23 0 18 75 27 84 6.02e-22 87.4
Msa0772210 AT3G04030.2 56.522 69 27 2 7 75 29 94 7.02e-21 85.1
Msa0772210 AT2G06020.1 65.455 55 19 0 21 75 82 136 3.10e-20 82.4
Msa0772210 AT4G04605.1 48.000 75 37 1 16 88 5 79 4.50e-20 80.5
Msa0772210 AT2G42660.1 65.455 55 19 0 22 76 47 101 5.77e-19 78.2
Msa0772210 AT2G02060.2 51.250 80 35 1 1 76 1 80 1.16e-18 77.4
Msa0772210 AT2G02060.1 51.250 80 35 1 1 76 1 80 1.16e-18 77.4
Msa0772210 AT5G06800.3 60.784 51 20 0 25 75 192 242 2.04e-18 77.0
Msa0772210 AT3G13040.3 64.706 51 18 0 25 75 241 291 4.14e-18 77.4
Msa0772210 AT3G13040.1 64.706 51 18 0 25 75 241 291 4.14e-18 77.4
Msa0772210 AT3G13040.2 64.706 51 18 0 25 75 241 291 4.14e-18 77.4
Msa0772210 AT5G06800.2 60.784 51 20 0 25 75 192 242 5.00e-18 77.0
Msa0772210 AT5G06800.1 60.784 51 20 0 25 75 192 242 6.75e-18 76.6
Msa0772210 AT2G40260.1 56.452 62 27 0 15 76 72 133 7.62e-18 76.6
Msa0772210 AT5G29000.4 60.784 51 20 0 25 75 231 281 1.15e-17 75.5
Msa0772210 AT1G32240.2 68.627 51 16 0 26 76 214 264 1.73e-17 75.5
Msa0772210 AT3G04450.3 58.824 51 21 0 25 75 238 288 2.28e-17 74.7
Msa0772210 AT5G29000.1 60.784 51 20 0 25 75 188 238 2.60e-17 75.1
Msa0772210 AT5G29000.3 60.784 51 20 0 25 75 188 238 2.60e-17 75.1
Msa0772210 AT5G29000.2 60.784 51 20 0 25 75 231 281 2.67e-17 75.1
Msa0772210 AT1G14600.1 56.061 66 29 0 11 76 9 74 2.74e-17 73.9
Msa0772210 AT1G32240.1 68.627 51 16 0 26 76 214 264 3.71e-17 74.7
Msa0772210 AT4G28610.1 60.784 51 20 0 25 75 225 275 4.21e-17 74.7
Msa0772210 AT3G04450.1 58.824 51 21 0 25 75 238 288 4.69e-17 74.3
Msa0772210 AT3G04450.4 58.824 51 21 0 25 75 198 248 6.40e-17 73.9
Msa0772210 AT3G04450.2 58.824 51 21 0 25 75 198 248 6.40e-17 73.9
Msa0772210 AT5G42630.2 64.706 51 18 0 26 76 106 156 7.60e-17 72.0
Msa0772210 AT5G16560.1 66.667 51 17 0 26 76 220 270 9.07e-17 73.6
Msa0772210 AT2G38300.1 60.000 55 22 0 22 76 51 105 9.53e-17 73.2
Msa0772210 AT4G17695.1 64.706 51 18 0 26 76 165 215 1.68e-16 72.4
Msa0772210 AT4G04580.1 47.619 63 33 0 14 76 3 65 1.72e-16 70.1
Msa0772210 AT5G42630.1 64.706 51 18 0 26 76 106 156 1.78e-16 72.0
Msa0772210 AT2G20400.2 55.172 58 26 0 25 82 231 288 3.18e-16 72.0
Msa0772210 AT2G20400.1 55.172 58 26 0 25 82 231 288 3.43e-16 72.0
Msa0772210 AT4G37180.3 54.000 50 23 0 27 76 212 261 2.23e-12 60.8
Msa0772210 AT4G04555.1 44.262 61 34 0 16 76 5 65 2.58e-12 57.8
Msa0772210 AT4G37180.2 55.102 49 22 0 27 75 219 267 1.26e-11 58.9
Msa0772210 AT4G37180.1 55.102 49 22 0 27 75 212 260 1.71e-11 58.5
Msa0772210 AT1G49560.2 49.091 55 28 0 25 79 192 246 6.68e-11 56.6

Find 29 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGGTTAATGGGATTAAA+AGG 0.242641 5_2:-46480962 Msa0772210:CDS
TGGAAGTTGAAGATAGAAAA+AGG 0.252301 5_2:-46481467 Msa0772210:five_prime_UTR
GTCCACCTCAACCTCGGCTT+CGG 0.264907 5_2:+46481365 None:intergenic
TAAGTCTGTTCTAAGGTTAA+TGG 0.265341 5_2:-46480972 Msa0772210:CDS
TCATTTGAAGAGCCATTTAC+AGG 0.303807 5_2:-46480927 Msa0772210:intron
AAGTCTGTTCTAAGGTTAAT+GGG 0.346285 5_2:-46480971 Msa0772210:CDS
GGAGGGAGAGGAGGAATTGA+AGG 0.362824 5_2:-46481422 Msa0772210:CDS
TAGAAGTTGTTACCTGTAAA+TGG 0.368392 5_2:+46480915 None:intergenic
TCCACCTCAACCTCGGCTTC+GGG 0.399137 5_2:+46481366 None:intergenic
TTCTATCTTCAACTTCCAAA+TGG 0.426561 5_2:+46481472 None:intergenic
AAAAGGAGGAGAGGGTATGA+TGG 0.439721 5_2:-46481450 Msa0772210:exon
ATGATGGAAAGTGGAGGGAG+AGG 0.440510 5_2:-46481434 Msa0772210:CDS
CGACTCCTAAGTCTGTTCTA+AGG 0.455099 5_2:-46480979 Msa0772210:CDS
GGAGAGGGTATGATGGAAAG+TGG 0.456884 5_2:-46481443 Msa0772210:exon
GGAGGAATTGAAGGGTATGA+TGG 0.463626 5_2:-46481413 Msa0772210:CDS
ATTAACCTTAGAACAGACTT+AGG 0.473463 5_2:+46480974 None:intergenic
AACAAAGCGGTCGTGAAGAT+CGG 0.492450 5_2:+46481340 None:intergenic
GTTGACGCTGTCACAAAGCT+TGG 0.498295 5_2:-46481320 Msa0772210:CDS
ATGGAAAGTGGAGGGAGAGG+AGG 0.521924 5_2:-46481431 Msa0772210:CDS
GAGGGAGAGGAGGAATTGAA+GGG 0.537312 5_2:-46481421 Msa0772210:CDS
ACCCGAAGCCGAGGTTGAGG+TGG 0.538160 5_2:-46481367 Msa0772210:CDS
GAGACCCGAAGCCGAGGTTG+AGG 0.538216 5_2:-46481370 Msa0772210:CDS
GAGGGTATGATGGAAAGTGG+AGG 0.565667 5_2:-46481440 Msa0772210:exon
AGGGTATGATGGAAAGTGGA+GGG 0.568191 5_2:-46481439 Msa0772210:exon
GACGCTGTCACAAAGCTTGG+TGG 0.598228 5_2:-46481317 Msa0772210:CDS
TGACGAGAGACCCGAAGCCG+AGG 0.631016 5_2:-46481376 Msa0772210:CDS
AGAAGAGGTACATACTGTCA+GGG 0.640171 5_2:+46481294 None:intergenic
TCGGTTGTCCACCTCAACCT+CGG 0.676640 5_2:+46481359 None:intergenic
TTGTGACAGCGTCAACAAAG+CGG 0.705022 5_2:+46481327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTAAATATTTTCTTATTAA+TGG - chr5_2:46480949-46480968 Msa0772210:CDS 10.0%
!!! ATTTTATTTTTTGACTAAAA+AGG + chr5_2:46481153-46481172 None:intergenic 10.0%
!!! TCTAAATATTTTCTTATTAA+TGG - chr5_2:46480949-46480968 Msa0772210:CDS 10.0%
!!! ATTTTATTTTTTGACTAAAA+AGG + chr5_2:46481153-46481172 None:intergenic 10.0%
!!! ATTCATTTTAATTTTCCATT+TGG - chr5_2:46480552-46480571 Msa0772210:CDS 15.0%
!!! ATTCATTTTAATTTTCCATT+TGG - chr5_2:46480552-46480571 Msa0772210:CDS 15.0%
!!! TTATTTTTTGACTAAAAAGG+TGG + chr5_2:46481150-46481169 None:intergenic 20.0%
!! TATATCATCACTATGTAAAA+AGG + chr5_2:46481200-46481219 None:intergenic 20.0%
!! ATAAACTAGCAGTTAAAAAT+AGG - chr5_2:46481236-46481255 Msa0772210:intron 20.0%
!!! CAATGTTTTCAAATTTCATT+TGG + chr5_2:46481414-46481433 None:intergenic 20.0%
!!! TTATTTTTTGACTAAAAAGG+TGG + chr5_2:46481150-46481169 None:intergenic 20.0%
!! TATATCATCACTATGTAAAA+AGG + chr5_2:46481200-46481219 None:intergenic 20.0%
!! ATAAACTAGCAGTTAAAAAT+AGG - chr5_2:46481236-46481255 Msa0772210:intron 20.0%
!!! CAATGTTTTCAAATTTCATT+TGG + chr5_2:46481414-46481433 None:intergenic 20.0%
! ATGTAAAAAGGCAAAAGAAA+AGG + chr5_2:46481188-46481207 None:intergenic 25.0%
! NTTTATGCTATAACTGCTTA+AGG - chr5_2:46481366-46481385 Msa0772210:CDS 25.0%
! ATGTAAAAAGGCAAAAGAAA+AGG + chr5_2:46481188-46481207 None:intergenic 25.0%
! NTTTATGCTATAACTGCTTA+AGG - chr5_2:46481366-46481385 Msa0772210:CDS 25.0%
TTCTATCTTCAACTTCCAAA+TGG + chr5_2:46480570-46480589 None:intergenic 30.0%
TGGAAGTTGAAGATAGAAAA+AGG - chr5_2:46480572-46480591 Msa0772210:intron 30.0%
AAGTTGAAGATAGAAAAAGG+AGG - chr5_2:46480575-46480594 Msa0772210:intron 30.0%
ACAAAACTAGATGAAAGAAG+AGG + chr5_2:46480763-46480782 None:intergenic 30.0%
! AGAAAGTGTGATGGAAAATT+TGG - chr5_2:46480899-46480918 Msa0772210:intron 30.0%
! GAAAGTGTGATGGAAAATTT+GGG - chr5_2:46480900-46480919 Msa0772210:intron 30.0%
GAATCATAAGCTTTCACAAT+TGG + chr5_2:46480931-46480950 None:intergenic 30.0%
!! TTGTTTGCTTTTGTGTTTAG+AGG - chr5_2:46481037-46481056 Msa0772210:intron 30.0%
ATTAACCTTAGAACAGACTT+AGG + chr5_2:46481068-46481087 None:intergenic 30.0%
!! TAAGTCTGTTCTAAGGTTAA+TGG - chr5_2:46481067-46481086 Msa0772210:intron 30.0%
!! AAGTCTGTTCTAAGGTTAAT+GGG - chr5_2:46481068-46481087 Msa0772210:intron 30.0%
CTAAGGTTAATGGGATTAAA+AGG - chr5_2:46481077-46481096 Msa0772210:intron 30.0%
TAGAAGTTGTTACCTGTAAA+TGG + chr5_2:46481127-46481146 None:intergenic 30.0%
TTCTATCTTCAACTTCCAAA+TGG + chr5_2:46480570-46480589 None:intergenic 30.0%
TGGAAGTTGAAGATAGAAAA+AGG - chr5_2:46480572-46480591 Msa0772210:intron 30.0%
AAGTTGAAGATAGAAAAAGG+AGG - chr5_2:46480575-46480594 Msa0772210:intron 30.0%
ACAAAACTAGATGAAAGAAG+AGG + chr5_2:46480763-46480782 None:intergenic 30.0%
! AGAAAGTGTGATGGAAAATT+TGG - chr5_2:46480899-46480918 Msa0772210:intron 30.0%
! GAAAGTGTGATGGAAAATTT+GGG - chr5_2:46480900-46480919 Msa0772210:intron 30.0%
GAATCATAAGCTTTCACAAT+TGG + chr5_2:46480931-46480950 None:intergenic 30.0%
!! TTGTTTGCTTTTGTGTTTAG+AGG - chr5_2:46481037-46481056 Msa0772210:intron 30.0%
ATTAACCTTAGAACAGACTT+AGG + chr5_2:46481068-46481087 None:intergenic 30.0%
!! TAAGTCTGTTCTAAGGTTAA+TGG - chr5_2:46481067-46481086 Msa0772210:intron 30.0%
!! AAGTCTGTTCTAAGGTTAAT+GGG - chr5_2:46481068-46481087 Msa0772210:intron 30.0%
CTAAGGTTAATGGGATTAAA+AGG - chr5_2:46481077-46481096 Msa0772210:intron 30.0%
TAGAAGTTGTTACCTGTAAA+TGG + chr5_2:46481127-46481146 None:intergenic 30.0%
AAGATAGAAAAAGGAGGAGA+GGG - chr5_2:46480581-46480600 Msa0772210:intron 35.0%
! GTGTTTCTATGTCTTTGCTA+CGG + chr5_2:46480819-46480838 None:intergenic 35.0%
! GACATTGAAAGAAAGTGTGA+TGG - chr5_2:46480890-46480909 Msa0772210:intron 35.0%
TCATTTGAAGAGCCATTTAC+AGG - chr5_2:46481112-46481131 Msa0772210:intron 35.0%
AATTTCATTTGGACCCTGTT+TGG + chr5_2:46481403-46481422 None:intergenic 35.0%
AAGATAGAAAAAGGAGGAGA+GGG - chr5_2:46480581-46480600 Msa0772210:intron 35.0%
! GTGTTTCTATGTCTTTGCTA+CGG + chr5_2:46480819-46480838 None:intergenic 35.0%
! GACATTGAAAGAAAGTGTGA+TGG - chr5_2:46480890-46480909 Msa0772210:intron 35.0%
TCATTTGAAGAGCCATTTAC+AGG - chr5_2:46481112-46481131 Msa0772210:intron 35.0%
AATTTCATTTGGACCCTGTT+TGG + chr5_2:46481403-46481422 None:intergenic 35.0%
GAAGATAGAAAAAGGAGGAG+AGG - chr5_2:46480580-46480599 Msa0772210:intron 40.0%
! AGAAGAGGTACATACTGTCA+GGG + chr5_2:46480748-46480767 None:intergenic 40.0%
! AAGAAGAGGTACATACTGTC+AGG + chr5_2:46480749-46480768 None:intergenic 40.0%
CGAACTAGAGCGCAATATTT+AGG + chr5_2:46480841-46480860 None:intergenic 40.0%
!! CGCAGTTGCATTTTAGTGTT+TGG - chr5_2:46480859-46480878 Msa0772210:intron 40.0%
GGCTTGATTGATGTATGTAG+TGG - chr5_2:46480970-46480989 Msa0772210:CDS 40.0%
AGGAAGTTGCTTATCCAAAC+AGG - chr5_2:46481386-46481405 Msa0772210:CDS 40.0%
GGAAGTTGCTTATCCAAACA+GGG - chr5_2:46481387-46481406 Msa0772210:CDS 40.0%
GAAGATAGAAAAAGGAGGAG+AGG - chr5_2:46480580-46480599 Msa0772210:intron 40.0%
! AGAAGAGGTACATACTGTCA+GGG + chr5_2:46480748-46480767 None:intergenic 40.0%
! AAGAAGAGGTACATACTGTC+AGG + chr5_2:46480749-46480768 None:intergenic 40.0%
CGAACTAGAGCGCAATATTT+AGG + chr5_2:46480841-46480860 None:intergenic 40.0%
!! CGCAGTTGCATTTTAGTGTT+TGG - chr5_2:46480859-46480878 Msa0772210:intron 40.0%
GGCTTGATTGATGTATGTAG+TGG - chr5_2:46480970-46480989 Msa0772210:CDS 40.0%
AGGAAGTTGCTTATCCAAAC+AGG - chr5_2:46481386-46481405 Msa0772210:CDS 40.0%
GGAAGTTGCTTATCCAAACA+GGG - chr5_2:46481387-46481406 Msa0772210:CDS 40.0%
! AAAAGGAGGAGAGGGTATGA+TGG - chr5_2:46480589-46480608 Msa0772210:intron 45.0%
! AGGGTATGATGGAAAGTGGA+GGG - chr5_2:46480600-46480619 Msa0772210:intron 45.0%
! GGAGGAATTGAAGGGTATGA+TGG - chr5_2:46480626-46480645 Msa0772210:intron 45.0%
AACAAAGCGGTCGTGAAGAT+CGG + chr5_2:46480702-46480721 None:intergenic 45.0%
TTGTGACAGCGTCAACAAAG+CGG + chr5_2:46480715-46480734 None:intergenic 45.0%
CGACTCCTAAGTCTGTTCTA+AGG - chr5_2:46481060-46481079 Msa0772210:intron 45.0%
! AAAAGGAGGAGAGGGTATGA+TGG - chr5_2:46480589-46480608 Msa0772210:intron 45.0%
! AGGGTATGATGGAAAGTGGA+GGG - chr5_2:46480600-46480619 Msa0772210:intron 45.0%
! GGAGGAATTGAAGGGTATGA+TGG - chr5_2:46480626-46480645 Msa0772210:intron 45.0%
AACAAAGCGGTCGTGAAGAT+CGG + chr5_2:46480702-46480721 None:intergenic 45.0%
TTGTGACAGCGTCAACAAAG+CGG + chr5_2:46480715-46480734 None:intergenic 45.0%
CGACTCCTAAGTCTGTTCTA+AGG - chr5_2:46481060-46481079 Msa0772210:intron 45.0%
!!! ATGATATATTTAATTTATAA+AGG - chr5_2:46481212-46481231 Msa0772210:intron 5.0%
!!! ATGATATATTTAATTTATAA+AGG - chr5_2:46481212-46481231 Msa0772210:intron 5.0%
! GGAGAGGGTATGATGGAAAG+TGG - chr5_2:46480596-46480615 Msa0772210:intron 50.0%
! GAGGGTATGATGGAAAGTGG+AGG - chr5_2:46480599-46480618 Msa0772210:intron 50.0%
! ATGATGGAAAGTGGAGGGAG+AGG - chr5_2:46480605-46480624 Msa0772210:intron 50.0%
GAGGGAGAGGAGGAATTGAA+GGG - chr5_2:46480618-46480637 Msa0772210:intron 50.0%
GTTGACGCTGTCACAAAGCT+TGG - chr5_2:46480719-46480738 Msa0772210:intron 50.0%
! GGAGAGGGTATGATGGAAAG+TGG - chr5_2:46480596-46480615 Msa0772210:intron 50.0%
! GAGGGTATGATGGAAAGTGG+AGG - chr5_2:46480599-46480618 Msa0772210:intron 50.0%
! ATGATGGAAAGTGGAGGGAG+AGG - chr5_2:46480605-46480624 Msa0772210:intron 50.0%
GAGGGAGAGGAGGAATTGAA+GGG - chr5_2:46480618-46480637 Msa0772210:intron 50.0%
GTTGACGCTGTCACAAAGCT+TGG - chr5_2:46480719-46480738 Msa0772210:intron 50.0%
ATGGAAAGTGGAGGGAGAGG+AGG - chr5_2:46480608-46480627 Msa0772210:intron 55.0%
GGAGGGAGAGGAGGAATTGA+AGG - chr5_2:46480617-46480636 Msa0772210:intron 55.0%
TCGGTTGTCCACCTCAACCT+CGG + chr5_2:46480683-46480702 None:intergenic 55.0%
GACGCTGTCACAAAGCTTGG+TGG - chr5_2:46480722-46480741 Msa0772210:intron 55.0%
ATGGAAAGTGGAGGGAGAGG+AGG - chr5_2:46480608-46480627 Msa0772210:intron 55.0%
GGAGGGAGAGGAGGAATTGA+AGG - chr5_2:46480617-46480636 Msa0772210:intron 55.0%
TCGGTTGTCCACCTCAACCT+CGG + chr5_2:46480683-46480702 None:intergenic 55.0%
GACGCTGTCACAAAGCTTGG+TGG - chr5_2:46480722-46480741 Msa0772210:intron 55.0%
TCCACCTCAACCTCGGCTTC+GGG + chr5_2:46480676-46480695 None:intergenic 60.0%
GTCCACCTCAACCTCGGCTT+CGG + chr5_2:46480677-46480696 None:intergenic 60.0%
TCCACCTCAACCTCGGCTTC+GGG + chr5_2:46480676-46480695 None:intergenic 60.0%
GTCCACCTCAACCTCGGCTT+CGG + chr5_2:46480677-46480696 None:intergenic 60.0%
TGACGAGAGACCCGAAGCCG+AGG - chr5_2:46480663-46480682 Msa0772210:intron 65.0%
GAGACCCGAAGCCGAGGTTG+AGG - chr5_2:46480669-46480688 Msa0772210:intron 65.0%
ACCCGAAGCCGAGGTTGAGG+TGG - chr5_2:46480672-46480691 Msa0772210:intron 65.0%
TGACGAGAGACCCGAAGCCG+AGG - chr5_2:46480663-46480682 Msa0772210:intron 65.0%
GAGACCCGAAGCCGAGGTTG+AGG - chr5_2:46480669-46480688 Msa0772210:intron 65.0%
ACCCGAAGCCGAGGTTGAGG+TGG - chr5_2:46480672-46480691 Msa0772210:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 46480541 46481520 46480541 ID=Msa0772210;Name=Msa0772210
chr5_2 mRNA 46480541 46481520 46480541 ID=Msa0772210-mRNA-1;Parent=Msa0772210;Name=Msa0772210-mRNA-1;_AED=0.14;_eAED=0.14;_QI=64|0.5|0.33|0.66|1|1|3|0|88
chr5_2 exon 46480541 46480582 46480541 ID=Msa0772210-mRNA-1:exon:13890;Parent=Msa0772210-mRNA-1
chr5_2 exon 46480928 46481004 46480928 ID=Msa0772210-mRNA-1:exon:13889;Parent=Msa0772210-mRNA-1
chr5_2 exon 46481309 46481520 46481309 ID=Msa0772210-mRNA-1:exon:13888;Parent=Msa0772210-mRNA-1
chr5_2 five_prime_UTR 46481457 46481520 46481457 ID=Msa0772210-mRNA-1:five_prime_utr;Parent=Msa0772210-mRNA-1
chr5_2 CDS 46481309 46481456 46481309 ID=Msa0772210-mRNA-1:cds;Parent=Msa0772210-mRNA-1
chr5_2 CDS 46480928 46481004 46480928 ID=Msa0772210-mRNA-1:cds;Parent=Msa0772210-mRNA-1
chr5_2 CDS 46480541 46480582 46480541 ID=Msa0772210-mRNA-1:cds;Parent=Msa0772210-mRNA-1
Gene Sequence

>Msa0772210

ATGATGGAAAGTGGAGGGAGAGGAGGAATTGAAGGGTATGATGGAGTGATGATGACGATGACGAGAGACCCGAAGCCGAGGTTGAGGTGGACAACCGATCTTCACGACCGCTTTGTTGACGCTGTCACAAAGCTTGGTGGCCCTGACAAGGCGACTCCTAAGTCTGTTCTAAGGTTAATGGGATTAAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGATTATAAATAGATGTAGCTATACATTGCAAGAAGATATCTGA

Protein sequence

>Msa0772210

MMESGGRGGIEGYDGVMMTMTRDPKPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQIINRCSYTLQEDI*