AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1415120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415120 MtrunA17_Chr4g0069291 98.000 450 9 0 1 450 131 580 0.0 906
Msa1415120 MtrunA17_Chr7g0269591 30.398 352 208 10 1 326 186 526 2.89e-38 148
Msa1415120 MtrunA17_Chr8g0344131 28.916 332 199 7 2 326 262 563 3.44e-31 127
Msa1415120 MtrunA17_Chr5g0395711 36.719 128 74 3 177 303 443 564 1.14e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1415120 AT3G17470.2 68.433 453 138 2 1 448 143 595 0.0 613
Msa1415120 AT3G17470.1 68.433 453 138 2 1 448 128 580 0.0 613
Msa1415120 AT3G17470.3 67.308 312 102 0 1 312 128 439 3.42e-154 445
Msa1415120 AT4G02260.3 30.063 316 191 7 1 297 188 492 7.34e-35 138
Msa1415120 AT4G02260.2 30.063 316 191 7 1 297 188 492 1.08e-34 137
Msa1415120 AT4G02260.4 30.063 316 191 7 1 297 188 492 1.14e-34 137
Msa1415120 AT1G54130.1 32.051 312 179 7 2 305 254 540 1.20e-34 137
Msa1415120 AT3G14050.1 32.051 312 179 8 2 305 250 536 8.92e-34 134
Msa1415120 AT4G02260.1 29.968 317 191 8 1 297 188 493 4.22e-33 133

Find 109 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCACTTGGAAAATCTTTA+AGG 0.162251 tig0024176:-2291 None:intergenic
TGACATTAGAGCTTTGATTT+TGG 0.217842 tig0024176:+1342 Msa1415120:CDS
GCCTTCCACGAATATCTTAT+AGG 0.237824 tig0024176:+2952 Msa1415120:three_prime_UTR
GACCCTCAACCTATCCTTAA+AGG 0.245282 tig0024176:+3000 Msa1415120:three_prime_UTR
ATCCACTAATTCCGCAAGTA+TGG 0.254255 tig0024176:-1641 None:intergenic
AGCACATCATTTACATCTTC+TGG 0.271709 tig0024176:-1736 None:intergenic
CATGCTGGCTGCAGCTGAAC+TGG 0.295606 tig0024176:+2258 Msa1415120:CDS
GCAGTGGATGTAAGTGAAAT+TGG 0.300443 tig0024176:+1931 Msa1415120:CDS
TAACTACATATCACTTGAAT+TGG 0.301558 tig0024176:+1483 Msa1415120:CDS
CAGGTATATAATAAGGAGTT+TGG 0.304931 tig0024176:+2843 Msa1415120:CDS
TTCCTCTTTACAAACGGTTC+TGG 0.309806 tig0024176:-3043 None:intergenic
TTTCCAAGTGCAAATCATAA+AGG 0.319956 tig0024176:+2301 Msa1415120:CDS
TTTAATTCAGGTATATAATA+AGG 0.339845 tig0024176:+2836 Msa1415120:CDS
GTGGATGATATCTCAGTTAA+AGG 0.351684 tig0024176:+1658 Msa1415120:CDS
TGCATCTAGAGTAGACATTC+TGG 0.356083 tig0024176:+1273 Msa1415120:CDS
TCCACATAAAGATATGAATA+AGG 0.356386 tig0024176:-1532 None:intergenic
GGCAAATCTTATACAACAAT+TGG 0.368357 tig0024176:-2932 None:intergenic
GGATTTCTTTCCACATAGAT+TGG 0.373050 tig0024176:-1846 None:intergenic
AATGCATTATCTCCAGACTT+AGG 0.376086 tig0024176:-1781 None:intergenic
AGGTTCTGCTACTGCTCATT+TGG 0.380091 tig0024176:+1222 Msa1415120:CDS
CTGGAGAGAGAGCGTGCTAC+AGG 0.382710 tig0024176:+1809 Msa1415120:CDS
TTCCAAGTGCAAATCATAAA+GGG 0.388198 tig0024176:+2302 Msa1415120:CDS
TGGGAGGACTAGACCCTTGA+TGG 0.390942 tig0024176:+1951 Msa1415120:CDS
GATTATATTGCCAGGCCAAA+AGG 0.405490 tig0024176:+1883 Msa1415120:CDS
ACAGATAAGAACTACTGAAA+TGG 0.407491 tig0024176:+1978 Msa1415120:CDS
TGATGAATACAAGAAAATAT+TGG 0.408026 tig0024176:+2782 Msa1415120:CDS
AGATGATAGTGGTTTAATTC+AGG 0.409345 tig0024176:+2824 Msa1415120:CDS
CATATCTTTATGTGGATACA+TGG 0.412806 tig0024176:+1539 Msa1415120:CDS
CGAGATGGTTCGTAATTTAG+AGG 0.415458 tig0024176:+2752 Msa1415120:CDS
AGCCAGAACCGTTTGTAAAG+AGG 0.417258 tig0024176:+3041 Msa1415120:three_prime_UTR
TTGAGAGAGGTGTTGGAAGT+AGG 0.431304 tig0024176:+1166 Msa1415120:CDS
CACAATGAAGAAGCTCTTGA+AGG 0.442293 tig0024176:+1702 Msa1415120:CDS
ATGCATTATCTCCAGACTTA+GGG 0.442953 tig0024176:-1780 None:intergenic
TCCCATACTTGCGGAATTAG+TGG 0.444671 tig0024176:+1639 Msa1415120:CDS
ATGATCTGCTGCTGATACCT+TGG 0.450610 tig0024176:-1409 None:intergenic
AAGAAAACACTAACCTCCTC+TGG 0.456445 tig0024176:-2060 None:intergenic
TCCTTATTCATATCTTTATG+TGG 0.459286 tig0024176:+1531 Msa1415120:CDS
ATGTCATGTGCATCTTCTCC+TGG 0.459375 tig0024176:-2430 None:intergenic
AAAATATTCCTCTTTACAAA+CGG 0.460364 tig0024176:-3049 None:intergenic
CTTGACATGATGAGGCATCT+TGG 0.461356 tig0024176:+1379 Msa1415120:CDS
TCTTATCTGTATTTCCATCA+AGG 0.463566 tig0024176:-1965 None:intergenic
TTCTCGACAAGAACGGAGAT+GGG 0.464209 tig0024176:+2359 Msa1415120:CDS
CATGAAGTTCGAAGTCAGAT+AGG 0.464988 tig0024176:+1202 Msa1415120:CDS
TGGATACAAAAGTTTGCATA+TGG 0.465288 tig0024176:+1909 Msa1415120:CDS
GGAACTTACAGAGGTGATAG+AGG 0.467883 tig0024176:+2396 Msa1415120:CDS
CTTCATATGGCAGATGATAG+TGG 0.471188 tig0024176:+2813 Msa1415120:CDS
ATTATATTGCCAGGCCAAAA+GGG 0.474542 tig0024176:+1884 Msa1415120:CDS
TGCTCCTCTTGCTCATGCTG+TGG 0.479821 tig0024176:+1456 Msa1415120:CDS
ATAATAAGGAGTTTGGCAAC+AGG 0.480517 tig0024176:+2850 Msa1415120:CDS
ACCCTCAACCTATCCTTAAA+GGG 0.486549 tig0024176:+3001 Msa1415120:three_prime_UTR
GGAGATAATGCATTGGAAGC+TGG 0.491096 tig0024176:+1790 Msa1415120:CDS
CTTCTCGACAAGAACGGAGA+TGG 0.492481 tig0024176:+2358 Msa1415120:CDS
TCCCTTTAAGGATAGGTTGA+GGG 0.493236 tig0024176:-3002 None:intergenic
ATTGGATGAGAAACTTCATA+TGG 0.494227 tig0024176:+2800 Msa1415120:CDS
GTGGTGTTGAACCCTAAGTC+TGG 0.496487 tig0024176:+1769 Msa1415120:CDS
TGTGGAAAGAAATCCCTTCT+CGG 0.498703 tig0024176:+1854 Msa1415120:CDS
CAGTGGATGTAAGTGAAATT+GGG 0.501702 tig0024176:+1932 Msa1415120:CDS
CTCCCTTTAAGGATAGGTTG+AGG 0.507292 tig0024176:-3003 None:intergenic
GATGCAGAAGTTATATCTGC+TGG 0.508548 tig0024176:+1139 Msa1415120:CDS
GGATACATGGTTGAGAAGTC+AGG 0.514914 tig0024176:+1552 Msa1415120:CDS
ATAGAGGAGCTTGGTGCACC+AGG 0.521684 tig0024176:+2412 Msa1415120:CDS
CTTATCTGTATTTCCATCAA+GGG 0.524648 tig0024176:-1964 None:intergenic
ATCCCTTTATGATTTGCACT+TGG 0.525949 tig0024176:-2304 None:intergenic
GCTCCTCTTGCTCATGCTGT+GGG 0.528069 tig0024176:+1457 Msa1415120:CDS
CAAAAGTTTGCATATGGCAG+TGG 0.532210 tig0024176:+1915 Msa1415120:CDS
ATTGCCAGGCCAAAAGGGAA+TGG 0.535893 tig0024176:+1889 Msa1415120:CDS
ATGGATAGGTTAGCTGTTGG+TGG 0.537695 tig0024176:+1997 Msa1415120:CDS
TCTCATTCATTATACAAGGC+TGG 0.539860 tig0024176:+2027 Msa1415120:CDS
CTTCTTGACTCGAACAGTGA+TGG 0.544084 tig0024176:+2460 Msa1415120:CDS
TTTCGCCTTCTCGACAAGAA+CGG 0.544865 tig0024176:+2352 Msa1415120:CDS
CATCTCCGTTCTTGTCGAGA+AGG 0.545112 tig0024176:-2357 None:intergenic
GGCATCTTGGTCACCTTCCA+AGG 0.547221 tig0024176:+1392 Msa1415120:CDS
TAGGTTAGCTGTTGGTGGAA+TGG 0.547704 tig0024176:+2002 Msa1415120:CDS
GGACTAAAGATTATATTGCC+AGG 0.550792 tig0024176:+1875 Msa1415120:CDS
CTGAAATTCATCAGAGCTGA+GGG 0.550894 tig0024176:-2485 None:intergenic
TCCACTAATTCCGCAAGTAT+GGG 0.553251 tig0024176:-1640 None:intergenic
ATCAAATCATCCAATCTATG+TGG 0.562146 tig0024176:+1836 Msa1415120:CDS
GAAGATGTAAATGATGTGCT+TGG 0.567130 tig0024176:+1739 Msa1415120:CDS
ATAGTAAATGTGATTGCAGA+TGG 0.567934 tig0024176:+1117 Msa1415120:intron
CTTTGAAGCTTGACATGATG+AGG 0.569527 tig0024176:+1371 Msa1415120:CDS
TGGAATATTGAGAGAGGTGT+TGG 0.571119 tig0024176:+1159 Msa1415120:CDS
AGTATCCTATAAGATATTCG+TGG 0.573789 tig0024176:-2957 None:intergenic
TAAGAACTACTGAAATGGAT+AGG 0.574391 tig0024176:+1983 Msa1415120:CDS
TATAATCTTTAGTCCGAGAA+GGG 0.574454 tig0024176:-1867 None:intergenic
GGCATCTCATTCATTATACA+AGG 0.575422 tig0024176:+2023 Msa1415120:CDS
CTCACTTAGATAATCTATTG+TGG 0.576514 tig0024176:+2978 Msa1415120:three_prime_UTR
TTCAGCTGCAGCCAGCATGA+TGG 0.579396 tig0024176:-2254 None:intergenic
ATGAAGAAGCTCTTGAAGGA+TGG 0.584555 tig0024176:+1706 Msa1415120:CDS
ATATAATCTTTAGTCCGAGA+AGG 0.585270 tig0024176:-1868 None:intergenic
TGGTTGAGAAGTCAGGAGAC+AGG 0.587107 tig0024176:+1559 Msa1415120:CDS
ATTCCCACAGCATGAGCAAG+AGG 0.587161 tig0024176:-1460 None:intergenic
TAAGTCTGGAGATAATGCAT+TGG 0.596696 tig0024176:+1783 Msa1415120:CDS
GCGTTTAAAGACCATCATGC+TGG 0.599824 tig0024176:+2243 Msa1415120:CDS
AGAAGCTCTTGAAGGATGGT+CGG 0.606805 tig0024176:+1710 Msa1415120:CDS
TGGAGAGAGAGCGTGCTACA+GGG 0.607107 tig0024176:+1810 Msa1415120:CDS
TCCTATAAGATATTCGTGGA+AGG 0.611103 tig0024176:-2953 None:intergenic
ACAGAGGTGATAGAGGAGCT+TGG 0.612835 tig0024176:+2403 Msa1415120:CDS
AAAATCTGATCCCATACTTG+CGG 0.616260 tig0024176:+1630 Msa1415120:CDS
TCTGCTGCTGATACCTTGGA+AGG 0.625070 tig0024176:-1405 None:intergenic
TCTGAAATTCATCAGAGCTG+AGG 0.641418 tig0024176:-2486 None:intergenic
AGATGGGAAGATAAGCATTG+AGG 0.649781 tig0024176:+2375 Msa1415120:CDS
ATCTGCTGGAATATTGAGAG+AGG 0.655258 tig0024176:+1153 Msa1415120:CDS
GGCTGGTCTTACTAATCCAG+AGG 0.657487 tig0024176:+2044 Msa1415120:CDS
TGATGTGCTTGGACTGCGAG+TGG 0.660485 tig0024176:+1750 Msa1415120:CDS
TGGTCTTACTAATCCAGAGG+AGG 0.668643 tig0024176:+2047 Msa1415120:CDS
TGGATGTAAGTGAAATTGGG+AGG 0.681330 tig0024176:+1935 Msa1415120:CDS
AAGCATTGAGGAACTTACAG+AGG 0.688318 tig0024176:+2387 Msa1415120:CDS
GAAATGGATAGGTTAGCTGT+TGG 0.706251 tig0024176:+1994 Msa1415120:CDS
TTGAGAAGTCAGGAGACAGG+TGG 0.721078 tig0024176:+1562 Msa1415120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAAATATTCCTTTTTTT+AGG + tig0024176:350-369 Msa1415120:intron 15.0%
!!! TCTATTTGTTTTATTAGTTA+AGG - tig0024176:659-678 None:intergenic 15.0%
!! ATAATGTTAGATAATAGATA+TGG + tig0024176:702-721 Msa1415120:intron 15.0%
!!! GCAATTGATTTTAAATAATT+TGG - tig0024176:888-907 None:intergenic 15.0%
!! TACTATAAAGAAACAATAAA+CGG - tig0024176:1103-1122 None:intergenic 15.0%
!! TTTAATTCAGGTATATAATA+AGG + tig0024176:2836-2855 Msa1415120:CDS 15.0%
!! ATGAAAATGAATGAAAGTAA+TGG - tig0024176:149-168 None:intergenic 20.0%
!! AAGTCAATAAATAGTAATCA+TGG - tig0024176:293-312 None:intergenic 20.0%
!!! TATTTTCTTATATTTCAGAC+CGG - tig0024176:339-358 None:intergenic 20.0%
!!! ATAAGAAAAGATTCCTTTTT+AGG + tig0024176:387-406 Msa1415120:intron 20.0%
!! ATTATTCAATGAACCTAAAA+AGG - tig0024176:403-422 None:intergenic 20.0%
!!! TATTTTCTTATATTTGAGAC+CGG + tig0024176:486-505 Msa1415120:intron 20.0%
!! AATATTGTGGTATACATATA+AGG + tig0024176:513-532 Msa1415120:intron 20.0%
!!! ATAATTGATTTTGACATGTT+TGG + tig0024176:786-805 Msa1415120:intron 20.0%
!!! TGTTTTATTTTTTGATACTC+AGG + tig0024176:2216-2235 Msa1415120:intron 20.0%
!! AGTTGTACATAATTTCTTAA+TGG + tig0024176:2610-2629 Msa1415120:intron 20.0%
!! TGATGAATACAAGAAAATAT+TGG + tig0024176:2782-2801 Msa1415120:CDS 20.0%
!! AAAATATTCCTCTTTACAAA+CGG - tig0024176:3052-3071 None:intergenic 20.0%
! CTACTCAATGAATCTAAAAA+AGG + tig0024176:461-480 Msa1415120:intron 25.0%
! AACAAATAGATAAGCTTAGA+AGG + tig0024176:669-688 Msa1415120:intron 25.0%
! CAAGTTAGAATCAATTATAG+AGG - tig0024176:837-856 None:intergenic 25.0%
!! AATTTCAGTAAGAGTTTGTT+TGG - tig0024176:1045-1064 None:intergenic 25.0%
! TAACTACATATCACTTGAAT+TGG + tig0024176:1483-1502 Msa1415120:CDS 25.0%
! TCCTTATTCATATCTTTATG+TGG + tig0024176:1531-1550 Msa1415120:CDS 25.0%
! TCCACATAAAGATATGAATA+AGG - tig0024176:1535-1554 None:intergenic 25.0%
!!! CACGTCTTTTTAAGAAATTA+TGG + tig0024176:2587-2606 Msa1415120:intron 25.0%
CAAAGTCTCACACATATAAT+TGG - tig0024176:239-258 None:intergenic 30.0%
CAATTATATGTGTGAGACTT+TGG + tig0024176:237-256 Msa1415120:intron 30.0%
TGAGACTTGAACCTAAAAAA+AGG - tig0024176:364-383 None:intergenic 30.0%
CATTGAGTAGTTAATGTATG+TGG - tig0024176:451-470 None:intergenic 30.0%
!! AATTTGACATTTTGAGAGCA+AGG + tig0024176:554-573 Msa1415120:intron 30.0%
!! AGTGTTGTTTAGTCTCAATT+TGG + tig0024176:582-601 Msa1415120:intron 30.0%
ATAATTTGGTTATGTGTCTC+TGG - tig0024176:874-893 None:intergenic 30.0%
TTGCAGTTAACAAAACACAT+AGG + tig0024176:904-923 Msa1415120:intron 30.0%
AACAGCTACTATACTCTTAA+TGG - tig0024176:943-962 None:intergenic 30.0%
CAATGAAATTATGACACTCA+AGG - tig0024176:1080-1099 None:intergenic 30.0%
ATAGTAAATGTGATTGCAGA+TGG + tig0024176:1117-1136 Msa1415120:intron 30.0%
!! TGACATTAGAGCTTTGATTT+TGG + tig0024176:1342-1361 Msa1415120:CDS 30.0%
CATATCTTTATGTGGATACA+TGG + tig0024176:1539-1558 Msa1415120:CDS 30.0%
ATCAAATCATCCAATCTATG+TGG + tig0024176:1836-1855 Msa1415120:CDS 30.0%
TATAATCTTTAGTCCGAGAA+GGG - tig0024176:1870-1889 None:intergenic 30.0%
ATATAATCTTTAGTCCGAGA+AGG - tig0024176:1871-1890 None:intergenic 30.0%
TGGATACAAAAGTTTGCATA+TGG + tig0024176:1909-1928 Msa1415120:CDS 30.0%
CTTATCTGTATTTCCATCAA+GGG - tig0024176:1967-1986 None:intergenic 30.0%
TCTTATCTGTATTTCCATCA+AGG - tig0024176:1968-1987 None:intergenic 30.0%
ACAGATAAGAACTACTGAAA+TGG + tig0024176:1978-1997 Msa1415120:CDS 30.0%
TAAGAACTACTGAAATGGAT+AGG + tig0024176:1983-2002 Msa1415120:CDS 30.0%
CTTGCAAAGATGAATGAATA+CGG - tig0024176:2095-2114 None:intergenic 30.0%
! TTTTTCATGTCTAAGGAGTT+AGG - tig0024176:2177-2196 None:intergenic 30.0%
!! TTCCTTCTTTTTCATGTCTA+AGG - tig0024176:2184-2203 None:intergenic 30.0%
GACATGAAAAAGAAGGAAAT+TGG + tig0024176:2186-2205 Msa1415120:intron 30.0%
TTGCACTTGGAAAATCTTTA+AGG - tig0024176:2294-2313 None:intergenic 30.0%
TTTCCAAGTGCAAATCATAA+AGG + tig0024176:2301-2320 Msa1415120:CDS 30.0%
TTCCAAGTGCAAATCATAAA+GGG + tig0024176:2302-2321 Msa1415120:CDS 30.0%
ATTTCAGATGTTCCAAAAAC+AGG + tig0024176:2501-2520 Msa1415120:CDS 30.0%
TAGCTCAAGTATATATGCTT+TGG - tig0024176:2652-2671 None:intergenic 30.0%
TTACATACAATTCATGAGAC+AGG - tig0024176:2706-2725 None:intergenic 30.0%
TGAATTGTATGTAACTCTAG+TGG + tig0024176:2712-2731 Msa1415120:intron 30.0%
TATGTAACTCTAGTGGTATT+TGG + tig0024176:2719-2738 Msa1415120:intron 30.0%
ATTGGATGAGAAACTTCATA+TGG + tig0024176:2800-2819 Msa1415120:CDS 30.0%
!! AGATGATAGTGGTTTAATTC+AGG + tig0024176:2824-2843 Msa1415120:CDS 30.0%
CAGGTATATAATAAGGAGTT+TGG + tig0024176:2843-2862 Msa1415120:CDS 30.0%
GGCAAATCTTATACAACAAT+TGG - tig0024176:2935-2954 None:intergenic 30.0%
AGTATCCTATAAGATATTCG+TGG - tig0024176:2960-2979 None:intergenic 30.0%
CTCACTTAGATAATCTATTG+TGG + tig0024176:2978-2997 Msa1415120:three_prime_UTR 30.0%
TGATTTGAAAAGAAGACCAG+AGG - tig0024176:14-33 None:intergenic 35.0%
!! ATGGATAAAGCTTTGGAAAG+AGG - tig0024176:94-113 None:intergenic 35.0%
TTCTTATATTTCAGACCGGA+GGG - tig0024176:335-354 None:intergenic 35.0%
TTTCTTATATTTCAGACCGG+AGG - tig0024176:336-355 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG + tig0024176:489-508 Msa1415120:intron 35.0%
! TTCTTATATTTGAGACCGGA+GGG + tig0024176:490-509 Msa1415120:intron 35.0%
!! TAAGCTTAGAAGGTTGATGA+TGG + tig0024176:679-698 Msa1415120:intron 35.0%
TTTCACCAAACACACATGTA+AGG - tig0024176:753-772 None:intergenic 35.0%
!! TGTGTGTTTGGTGAAACTTT+TGG + tig0024176:757-776 Msa1415120:intron 35.0%
!! TAGAGCTTTGATTTTGGACT+TGG + tig0024176:1348-1367 Msa1415120:CDS 35.0%
AAAATCTGATCCCATACTTG+CGG + tig0024176:1630-1649 Msa1415120:CDS 35.0%
GTGGATGATATCTCAGTTAA+AGG + tig0024176:1658-1677 Msa1415120:CDS 35.0%
AGCACATCATTTACATCTTC+TGG - tig0024176:1739-1758 None:intergenic 35.0%
GAAGATGTAAATGATGTGCT+TGG + tig0024176:1739-1758 Msa1415120:CDS 35.0%
ATGCATTATCTCCAGACTTA+GGG - tig0024176:1783-1802 None:intergenic 35.0%
AATGCATTATCTCCAGACTT+AGG - tig0024176:1784-1803 None:intergenic 35.0%
TAAGTCTGGAGATAATGCAT+TGG + tig0024176:1783-1802 Msa1415120:CDS 35.0%
GGATTTCTTTCCACATAGAT+TGG - tig0024176:1849-1868 None:intergenic 35.0%
GGACTAAAGATTATATTGCC+AGG + tig0024176:1875-1894 Msa1415120:CDS 35.0%
ATTATATTGCCAGGCCAAAA+GGG + tig0024176:1884-1903 Msa1415120:CDS 35.0%
! CTTTTGTATCCATTCCCTTT+TGG - tig0024176:1901-1920 None:intergenic 35.0%
CAGTGGATGTAAGTGAAATT+GGG + tig0024176:1932-1951 Msa1415120:CDS 35.0%
GGCATCTCATTCATTATACA+AGG + tig0024176:2023-2042 Msa1415120:CDS 35.0%
TCTCATTCATTATACAAGGC+TGG + tig0024176:2027-2046 Msa1415120:CDS 35.0%
CTCCTTAGACATGAAAAAGA+AGG + tig0024176:2179-2198 Msa1415120:intron 35.0%
! ATCCCTTTATGATTTGCACT+TGG - tig0024176:2307-2326 None:intergenic 35.0%
! GACATCAAATCACCTGTTTT+TGG - tig0024176:2516-2535 None:intergenic 35.0%
AGGTGATTTGATGTCTTATC+AGG + tig0024176:2521-2540 Msa1415120:intron 35.0%
! TGCTTTGGTAATCAGATAGT+TGG - tig0024176:2637-2656 None:intergenic 35.0%
!!! CTAGTGGTATTTGGTTTTGT+AGG + tig0024176:2728-2747 Msa1415120:intron 35.0%
ATAATAAGGAGTTTGGCAAC+AGG + tig0024176:2850-2869 Msa1415120:CDS 35.0%
TCCTATAAGATATTCGTGGA+AGG - tig0024176:2956-2975 None:intergenic 35.0%
!! TTTTCACTCCCTTTAAGGAT+AGG - tig0024176:3012-3031 None:intergenic 35.0%
! GACTATTTTCACTCCCTTTA+AGG - tig0024176:3017-3036 None:intergenic 35.0%
!! AGAGCTTTGAAGAACAGGAA+TGG - tig0024176:47-66 None:intergenic 40.0%
CATGGCAATGGATAAAGCTT+TGG - tig0024176:101-120 None:intergenic 40.0%
GTATACCACAATATTCCCTC+CGG - tig0024176:508-527 None:intergenic 40.0%
GTTGACCTTACATGTGTGTT+TGG + tig0024176:745-764 Msa1415120:intron 40.0%
!! GTGTTTGGTGAAACTTTTGG+AGG + tig0024176:760-779 Msa1415120:intron 40.0%
GATGCAGAAGTTATATCTGC+TGG + tig0024176:1139-1158 Msa1415120:CDS 40.0%
ATCTGCTGGAATATTGAGAG+AGG + tig0024176:1153-1172 Msa1415120:CDS 40.0%
! TGGAATATTGAGAGAGGTGT+TGG + tig0024176:1159-1178 Msa1415120:CDS 40.0%
CATGAAGTTCGAAGTCAGAT+AGG + tig0024176:1202-1221 Msa1415120:CDS 40.0%
! TGCATCTAGAGTAGACATTC+TGG + tig0024176:1273-1292 Msa1415120:CDS 40.0%
!! CTTTGAAGCTTGACATGATG+AGG + tig0024176:1371-1390 Msa1415120:CDS 40.0%
TCCACTAATTCCGCAAGTAT+GGG - tig0024176:1643-1662 None:intergenic 40.0%
ATCCACTAATTCCGCAAGTA+TGG - tig0024176:1644-1663 None:intergenic 40.0%
CACAATGAAGAAGCTCTTGA+AGG + tig0024176:1702-1721 Msa1415120:CDS 40.0%
ATGAAGAAGCTCTTGAAGGA+TGG + tig0024176:1706-1725 Msa1415120:CDS 40.0%
TGTGGAAAGAAATCCCTTCT+CGG + tig0024176:1854-1873 Msa1415120:CDS 40.0%
GATTATATTGCCAGGCCAAA+AGG + tig0024176:1883-1902 Msa1415120:CDS 40.0%
CAAAAGTTTGCATATGGCAG+TGG + tig0024176:1915-1934 Msa1415120:CDS 40.0%
GCAGTGGATGTAAGTGAAAT+TGG + tig0024176:1931-1950 Msa1415120:CDS 40.0%
TGGATGTAAGTGAAATTGGG+AGG + tig0024176:1935-1954 Msa1415120:CDS 40.0%
! GAAATGGATAGGTTAGCTGT+TGG + tig0024176:1994-2013 Msa1415120:CDS 40.0%
AAGAAAACACTAACCTCCTC+TGG - tig0024176:2063-2082 None:intergenic 40.0%
TCTAAGGAGTTAGGTCTAGA+TGG - tig0024176:2168-2187 None:intergenic 40.0%
! AGATGGGAAGATAAGCATTG+AGG + tig0024176:2375-2394 Msa1415120:CDS 40.0%
!! AAGCATTGAGGAACTTACAG+AGG + tig0024176:2387-2406 Msa1415120:CDS 40.0%
CTGAAATTCATCAGAGCTGA+GGG - tig0024176:2488-2507 None:intergenic 40.0%
! TCTGAAATTCATCAGAGCTG+AGG - tig0024176:2489-2508 None:intergenic 40.0%
!!! TTTGGTTTTGTAGGTCGAGA+TGG + tig0024176:2737-2756 Msa1415120:intron 40.0%
CGAGATGGTTCGTAATTTAG+AGG + tig0024176:2752-2771 Msa1415120:CDS 40.0%
CTTCATATGGCAGATGATAG+TGG + tig0024176:2813-2832 Msa1415120:CDS 40.0%
GCCTTCCACGAATATCTTAT+AGG + tig0024176:2952-2971 Msa1415120:three_prime_UTR 40.0%
ACCCTCAACCTATCCTTAAA+GGG + tig0024176:3001-3020 Msa1415120:three_prime_UTR 40.0%
! TCCCTTTAAGGATAGGTTGA+GGG - tig0024176:3005-3024 None:intergenic 40.0%
TTCCTCTTTACAAACGGTTC+TGG - tig0024176:3046-3065 None:intergenic 40.0%
AAGAAGACCAGAGGAACTTG+TGG - tig0024176:5-24 None:intergenic 45.0%
!! AGAGGAGAGCTTTGAAGAAC+AGG - tig0024176:52-71 None:intergenic 45.0%
TCTTAAACTTGTCCTCCCTC+CGG + tig0024176:317-336 Msa1415120:intron 45.0%
TTATATTTCAGACCGGAGGG+AGG - tig0024176:332-351 None:intergenic 45.0%
!! TTGAGAGAGGTGTTGGAAGT+AGG + tig0024176:1166-1185 Msa1415120:CDS 45.0%
AGGTTCTGCTACTGCTCATT+TGG + tig0024176:1222-1241 Msa1415120:CDS 45.0%
! CTTGACATGATGAGGCATCT+TGG + tig0024176:1379-1398 Msa1415120:CDS 45.0%
ATGATCTGCTGCTGATACCT+TGG - tig0024176:1412-1431 None:intergenic 45.0%
GGATACATGGTTGAGAAGTC+AGG + tig0024176:1552-1571 Msa1415120:CDS 45.0%
TCCCATACTTGCGGAATTAG+TGG + tig0024176:1639-1658 Msa1415120:CDS 45.0%
AGAAGCTCTTGAAGGATGGT+CGG + tig0024176:1710-1729 Msa1415120:CDS 45.0%
GGAGATAATGCATTGGAAGC+TGG + tig0024176:1790-1809 Msa1415120:CDS 45.0%
! ATGGATAGGTTAGCTGTTGG+TGG + tig0024176:1997-2016 Msa1415120:CDS 45.0%
! TAGGTTAGCTGTTGGTGGAA+TGG + tig0024176:2002-2021 Msa1415120:CDS 45.0%
! TGGTCTTACTAATCCAGAGG+AGG + tig0024176:2047-2066 Msa1415120:CDS 45.0%
GCGTTTAAAGACCATCATGC+TGG + tig0024176:2243-2262 Msa1415120:CDS 45.0%
TTTCGCCTTCTCGACAAGAA+CGG + tig0024176:2352-2371 Msa1415120:CDS 45.0%
TTCTCGACAAGAACGGAGAT+GGG + tig0024176:2359-2378 Msa1415120:CDS 45.0%
GGAACTTACAGAGGTGATAG+AGG + tig0024176:2396-2415 Msa1415120:CDS 45.0%
ATGTCATGTGCATCTTCTCC+TGG - tig0024176:2433-2452 None:intergenic 45.0%
! CTTCTTGACTCGAACAGTGA+TGG + tig0024176:2460-2479 Msa1415120:CDS 45.0%
GACCCTCAACCTATCCTTAA+AGG + tig0024176:3000-3019 Msa1415120:three_prime_UTR 45.0%
! CTCCCTTTAAGGATAGGTTG+AGG - tig0024176:3006-3025 None:intergenic 45.0%
AGCCAGAACCGTTTGTAAAG+AGG + tig0024176:3041-3060 Msa1415120:three_prime_UTR 45.0%
AGCTCTCCTCTTACTCCTGA+TGG + tig0024176:61-80 Msa1415120:five_prime_UTR 50.0%
! ATCAGCGAGAAGCATGGCAA+TGG - tig0024176:113-132 None:intergenic 50.0%
CTGAAGATCAGCGAGAAGCA+TGG - tig0024176:119-138 None:intergenic 50.0%
CATGCTTCTCGCTGATCTTC+AGG + tig0024176:117-136 Msa1415120:five_prime_UTR 50.0%
TGAGACCGGAGGGAATATTG+TGG + tig0024176:500-519 Msa1415120:intron 50.0%
TCTGCTGCTGATACCTTGGA+AGG - tig0024176:1408-1427 None:intergenic 50.0%
ATTCCCACAGCATGAGCAAG+AGG - tig0024176:1463-1482 None:intergenic 50.0%
TGGTTGAGAAGTCAGGAGAC+AGG + tig0024176:1559-1578 Msa1415120:CDS 50.0%
TTGAGAAGTCAGGAGACAGG+TGG + tig0024176:1562-1581 Msa1415120:CDS 50.0%
! GTGGTGTTGAACCCTAAGTC+TGG + tig0024176:1769-1788 Msa1415120:CDS 50.0%
ATTGCCAGGCCAAAAGGGAA+TGG + tig0024176:1889-1908 Msa1415120:CDS 50.0%
! GTATCCATTCCCTTTTGGCC+TGG - tig0024176:1896-1915 None:intergenic 50.0%
!! GGCTGGTCTTACTAATCCAG+AGG + tig0024176:2044-2063 Msa1415120:CDS 50.0%
CATCTCCGTTCTTGTCGAGA+AGG - tig0024176:2360-2379 None:intergenic 50.0%
CTTCTCGACAAGAACGGAGA+TGG + tig0024176:2358-2377 Msa1415120:CDS 50.0%
ACAGAGGTGATAGAGGAGCT+TGG + tig0024176:2403-2422 Msa1415120:CDS 50.0%
GAGCGACCATCAGGAGTAAG+AGG - tig0024176:70-89 None:intergenic 55.0%
GAAAGAGGAGAGCGACCATC+AGG - tig0024176:79-98 None:intergenic 55.0%
GGCATCTTGGTCACCTTCCA+AGG + tig0024176:1392-1411 Msa1415120:CDS 55.0%
TGCTCCTCTTGCTCATGCTG+TGG + tig0024176:1456-1475 Msa1415120:CDS 55.0%
GCTCCTCTTGCTCATGCTGT+GGG + tig0024176:1457-1476 Msa1415120:CDS 55.0%
TGATGTGCTTGGACTGCGAG+TGG + tig0024176:1750-1769 Msa1415120:CDS 55.0%
! TGGAGAGAGAGCGTGCTACA+GGG + tig0024176:1810-1829 Msa1415120:CDS 55.0%
TGGGAGGACTAGACCCTTGA+TGG + tig0024176:1951-1970 Msa1415120:CDS 55.0%
TTCAGCTGCAGCCAGCATGA+TGG - tig0024176:2257-2276 None:intergenic 55.0%
!! ATAGAGGAGCTTGGTGCACC+AGG + tig0024176:2412-2431 Msa1415120:CDS 55.0%
! CTGGAGAGAGAGCGTGCTAC+AGG + tig0024176:1809-1828 Msa1415120:CDS 60.0%
! CATGCTGGCTGCAGCTGAAC+TGG + tig0024176:2258-2277 Msa1415120:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0024176 gene 1 3118 1 ID=Msa1415120;Name=Msa1415120
tig0024176 mRNA 1 3118 1 ID=Msa1415120-mRNA-1;Parent=Msa1415120;Name=Msa1415120-mRNA-1;_AED=0.17;_eAED=0.17;_QI=153|1|1|1|0.66|0.75|4|234|450
tig0024176 exon 1 138 1 ID=Msa1415120-mRNA-1:exon:22186;Parent=Msa1415120-mRNA-1
tig0024176 exon 1121 2068 1121 ID=Msa1415120-mRNA-1:exon:22187;Parent=Msa1415120-mRNA-1
tig0024176 exon 2238 2522 2238 ID=Msa1415120-mRNA-1:exon:22188;Parent=Msa1415120-mRNA-1
tig0024176 exon 2750 3118 2750 ID=Msa1415120-mRNA-1:exon:22189;Parent=Msa1415120-mRNA-1
tig0024176 five_prime_UTR 1 138 1 ID=Msa1415120-mRNA-1:five_prime_utr;Parent=Msa1415120-mRNA-1
tig0024176 five_prime_UTR 1121 1135 1121 ID=Msa1415120-mRNA-1:five_prime_utr;Parent=Msa1415120-mRNA-1
tig0024176 CDS 1136 2068 1136 ID=Msa1415120-mRNA-1:cds;Parent=Msa1415120-mRNA-1
tig0024176 CDS 2238 2522 2238 ID=Msa1415120-mRNA-1:cds;Parent=Msa1415120-mRNA-1
tig0024176 CDS 2750 2884 2750 ID=Msa1415120-mRNA-1:cds;Parent=Msa1415120-mRNA-1
tig0024176 three_prime_UTR 2885 3118 2885 ID=Msa1415120-mRNA-1:three_prime_utr;Parent=Msa1415120-mRNA-1
Gene Sequence

>Msa1415120

ATGGATGCAGAAGTTATATCTGCTGGAATATTGAGAGAGGTGTTGGAAGTAGGTGAGTTAAATCTACATGAAGTTCGAAGTCAGATAGGTTCTGCTACTGCTCATTTGGTGCACGAGAGTTTGCGTGTTAAGAACTTTGCATCTAGAGTAGACATTCTGGATGAAGAGAATGCTGCTGCTTTGAGAAAGTTCTGTCTCACTTACTATGACATTAGAGCTTTGATTTTGGACTTGGCTTTGAAGCTTGACATGATGAGGCATCTTGGTCACCTTCCAAGGTATCAGCAGCAGATCATTTCTCTGCAAGTTATGAAAATATATGCTCCTCTTGCTCATGCTGTGGGAATTAACTACATATCACTTGAATTGGAAGATCTCTCGTTTCAGTATTTGTTTCCTTATTCATATCTTTATGTGGATACATGGTTGAGAAGTCAGGAGACAGGTGGTATATCTCTTATCGATGTATACAAAGATGAATTGCTTCAGTCACTAAAATCTGATCCCATACTTGCGGAATTAGTGGATGATATCTCAGTTAAAGGTCGTTATAAAAGTCGTTACAGCACAATGAAGAAGCTCTTGAAGGATGGTCGGAGACCAGAAGATGTAAATGATGTGCTTGGACTGCGAGTGGTGTTGAACCCTAAGTCTGGAGATAATGCATTGGAAGCTGGAGAGAGAGCGTGCTACAGGGCTCATCAAATCATCCAATCTATGTGGAAAGAAATCCCTTCTCGGACTAAAGATTATATTGCCAGGCCAAAAGGGAATGGATACAAAAGTTTGCATATGGCAGTGGATGTAAGTGAAATTGGGAGGACTAGACCCTTGATGGAAATACAGATAAGAACTACTGAAATGGATAGGTTAGCTGTTGGTGGAATGGCATCTCATTCATTATACAAGGCTGGTCTTACTAATCCAGAGGAGGCAAAGCGTTTAAAGACCATCATGCTGGCTGCAGCTGAACTGGCTGCTTTGCGCCTTAAAGATTTTCCAAGTGCAAATCATAAAGGGATTGAATTTGATCAGAGAGATAGAGTATTTCGCCTTCTCGACAAGAACGGAGATGGGAAGATAAGCATTGAGGAACTTACAGAGGTGATAGAGGAGCTTGGTGCACCAGGAGAAGATGCACATGACATGATGCTGCTTCTTGACTCGAACAGTGATGGCTCCCTCAGCTCTGATGAATTTCAGATGTTCCAAAAACAGGTCGAGATGGTTCGTAATTTAGAGGACAGAGATGATGAATACAAGAAAATATTGGATGAGAAACTTCATATGGCAGATGATAGTGGTTTAATTCAGGTATATAATAAGGAGTTTGGCAACAGGCTTGTGAGCTAG

Protein sequence

>Msa1415120

MDAEVISAGILREVLEVGELNLHEVRSQIGSATAHLVHESLRVKNFASRVDILDEENAAALRKFCLTYYDIRALILDLALKLDMMRHLGHLPRYQQQIISLQVMKIYAPLAHAVGINYISLELEDLSFQYLFPYSYLYVDTWLRSQETGGISLIDVYKDELLQSLKSDPILAELVDDISVKGRYKSRYSTMKKLLKDGRRPEDVNDVLGLRVVLNPKSGDNALEAGERACYRAHQIIQSMWKEIPSRTKDYIARPKGNGYKSLHMAVDVSEIGRTRPLMEIQIRTTEMDRLAVGGMASHSLYKAGLTNPEEAKRLKTIMLAAAELAALRLKDFPSANHKGIEFDQRDRVFRLLDKNGDGKISIEELTEVIEELGAPGEDAHDMMLLLDSNSDGSLSSDEFQMFQKQVEMVRNLEDRDDEYKKILDEKLHMADDSGLIQVYNKEFGNRLVS*