AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157160 MtrunA17_Chr7g0251231 92.857 630 14 1 8 606 1 630 0.0 1133
Msa1157160 MtrunA17_Chr3g0102681 28.833 600 369 14 31 603 69 637 3.70e-23 104
Msa1157160 MtrunA17_Chr5g0446731 27.564 624 388 16 14 601 47 642 3.73e-14 75.9
Msa1157160 MtrunA17_Chr3g0078801 27.724 624 387 16 14 601 47 642 2.51e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157160 AT1G66840.2 39.737 609 335 10 11 606 17 606 1.94e-98 313
Msa1157160 AT1G66840.1 39.737 609 335 10 11 606 17 606 1.94e-98 313
Msa1157160 AT5G38150.1 39.336 572 311 9 32 596 33 575 1.48e-84 275
Msa1157160 AT5G55860.1 27.987 611 384 14 22 603 52 635 1.55e-21 99.4
Msa1157160 AT2G26570.1 26.243 503 326 11 31 504 204 690 1.80e-12 70.9
Msa1157160 AT2G26570.2 26.243 503 326 11 31 504 204 690 1.80e-12 70.9

Find 81 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAATAACTTTGCCAAATT+TGG 0.040291 7_4:-46039940 None:intergenic
AAAGAAAGTTATTCCAAATT+TGG 0.158348 7_4:+46039927 Msa1157160:CDS
CGCCTCAAGTTCCTCCTTTA+CGG 0.197031 7_4:-46039017 None:intergenic
TAGATACTCATATTCAAATT+TGG 0.197756 7_4:-46039533 None:intergenic
GTTGCAGATTCAATTGAATT+TGG 0.253403 7_4:+46038892 Msa1157160:CDS
AGAAACAGATGAAGCTAAAA+TGG 0.255073 7_4:+46039288 Msa1157160:CDS
TGATGCTTCCATTTCTTTCT+CGG 0.288847 7_4:-46038600 None:intergenic
AGTTCTCTTGTTCTTGAAGT+AGG 0.315905 7_4:-46038245 None:intergenic
TGTTAAAGCTCTTTCTTTCA+TGG 0.315991 7_4:-46039482 None:intergenic
ATTGAATTTGGTCAAAGAAA+TGG 0.316878 7_4:+46038904 Msa1157160:CDS
CCAAATTTGGCAAAGTTATT+CGG 0.321021 7_4:+46039940 Msa1157160:CDS
TTCTGCTGCAGCTGCATGAT+TGG 0.331292 7_4:-46039557 None:intergenic
AAATGAGTTCTCATTCAAAT+TGG 0.332919 7_4:+46038772 Msa1157160:CDS
AACAACTGAAGCTTTAGCTT+TGG 0.339949 7_4:+46039432 Msa1157160:CDS
GGACTAATGTGCCGAGTTGC+AGG 0.340914 7_4:-46039886 None:intergenic
AGCAAGTACTTGTTCTTCAT+TGG 0.359144 7_4:-46038684 None:intergenic
AGAATTGGAATATCTCAAAA+AGG 0.374578 7_4:+46038523 Msa1157160:CDS
AGAACAAGTACTTGCTGAAT+TGG 0.382678 7_4:+46038691 Msa1157160:CDS
TTAAGAAAGGGTGACGAATC+AGG 0.386265 7_4:+46038974 Msa1157160:CDS
CATAGAAACATTAGAGAAGA+AGG 0.416171 7_4:+46038433 Msa1157160:CDS
AGAAAGAGTATTAAATCAAA+TGG 0.421669 7_4:+46039814 Msa1157160:CDS
TGGTCAAAGAAATGGAGAAA+AGG 0.424730 7_4:+46038912 Msa1157160:CDS
CTCCTTTACGGTTTGTAACT+CGG 0.426077 7_4:-46039005 None:intergenic
AGATGAAAGTGTGAAACTAT+TGG 0.426555 7_4:+46038943 Msa1157160:CDS
GTTCTCTTGTTCTTGAAGTA+GGG 0.431248 7_4:-46038244 None:intergenic
GAAGGTACAAAGAGAGTAGA+TGG 0.434441 7_4:+46038291 Msa1157160:CDS
TTCCAATGTCTCTTCTAGCT+TGG 0.442664 7_4:-46038271 None:intergenic
TGCACAAGTGATGAGAGAAT+TGG 0.443791 7_4:+46038508 Msa1157160:CDS
TTAGCTTTGATTAGAGATGA+AGG 0.446414 7_4:+46039052 Msa1157160:CDS
GGTCAAAGAAATGGAGAAAA+GGG 0.450694 7_4:+46038913 Msa1157160:CDS
AAAAGAAGAAGTACTTAGAA+AGG 0.456072 7_4:+46038649 Msa1157160:CDS
AGATATTATAACAACTAAGT+TGG 0.460017 7_4:+46039330 Msa1157160:CDS
ATTGGAAGGAAGTTTAAGAA+AGG 0.468539 7_4:+46038961 Msa1157160:CDS
TTTCTCTTCTTAAGAGTGAA+AGG 0.481141 7_4:-46039907 None:intergenic
AAATCTCTCTTCTATGATTG+AGG 0.483933 7_4:+46038376 Msa1157160:CDS
CTCTTTCAAAGCTTCAATCC+TGG 0.488651 7_4:-46038714 None:intergenic
GAAATGGAGAAAAGGGTTCA+AGG 0.496156 7_4:+46038920 Msa1157160:CDS
GATTGAAGCTTTGAAAGAGT+TGG 0.497137 7_4:+46038718 Msa1157160:CDS
AAGTACTTGCTGAATTGGCC+AGG 0.505239 7_4:+46038696 Msa1157160:CDS
TGAAGCTTTGAAAGAGTTGG+AGG 0.507795 7_4:+46038721 Msa1157160:CDS
TTGGAAGGAAGTTTAAGAAA+GGG 0.508282 7_4:+46038962 Msa1157160:CDS
ATCGCGGGCCGAGAAAGAAA+TGG 0.508474 7_4:+46038592 Msa1157160:CDS
TGAGCTGAAGCATGTAACTA+AGG 0.508606 7_4:+46039111 Msa1157160:CDS
ACATTAGAGAAGAAGGGAAA+AGG 0.510519 7_4:+46038440 Msa1157160:CDS
AAGATGGATGATACTAAAGT+TGG 0.511606 7_4:+46037873 Msa1157160:CDS
GAGCGAGAAGGAAATACTAC+TGG 0.513052 7_4:+46039636 Msa1157160:CDS
AACATGGTGCTATAGTTGTA+AGG 0.527263 7_4:+46038465 Msa1157160:CDS
GGTTCAAAATCTCAATTCAA+AGG 0.530696 7_4:+46039165 Msa1157160:CDS
AAGTTGCGGCAGCTGAGGCA+TGG 0.536231 7_4:+46039596 Msa1157160:CDS
ATAAAGTTAGTTATATCAGC+TGG 0.538749 7_4:-46040067 None:intergenic
AATAGTTCAAAGAGAACTCA+AGG 0.539801 7_4:+46039666 Msa1157160:CDS
CAATGAAGTTCTATTTGCCA+AGG 0.542939 7_4:-46040120 None:intergenic
CACCAAGCTAGAAGAGACAT+TGG 0.548216 7_4:+46038269 Msa1157160:CDS
CAAAGCTAAGGCGAAAATGA+AGG 0.549569 7_4:+46038409 Msa1157160:CDS
GCAAGGCGTTATGAAAGAGT+TGG 0.550969 7_4:+46039399 Msa1157160:CDS
GGTTTACATCAAAGAGAAGA+TGG 0.551787 7_4:+46039714 Msa1157160:CDS
TGATTTGTCTATCTCTTCCG+TGG 0.565283 7_4:-46038822 None:intergenic
GGAATCAAGTTACAAAGCTA+AGG 0.568567 7_4:+46038397 Msa1157160:CDS
ATATCTAATATGCAAGGTGA+AGG 0.569278 7_4:+46040088 Msa1157160:three_prime_UTR
AAAATGTTACTGTATAAATG+TGG 0.571036 7_4:-46040236 None:intergenic
TAGACTGGAATTTAAAACAA+TGG 0.575908 7_4:-46040002 None:intergenic
GGCATGGATTGAAGCGCTCA+AGG 0.579700 7_4:+46039612 Msa1157160:CDS
TACCGAGTTACAAACCGTAA+AGG 0.586528 7_4:+46039003 Msa1157160:CDS
AGAAGCCGCATCTGCTGCAG+AGG 0.589655 7_4:+46039210 Msa1157160:CDS
ATAGAAACATTAGAGAAGAA+GGG 0.594229 7_4:+46038434 Msa1157160:CDS
GAAAGTGTGAAACTATTGGA+AGG 0.594809 7_4:+46038947 Msa1157160:CDS
TTGTGCATATGATTGTAGAC+TGG 0.601537 7_4:-46040017 None:intergenic
AACTTTATATCTAATATGCA+AGG 0.610297 7_4:+46040082 Msa1157160:three_prime_UTR
GTTTAAGCTAAAGCTTGACG+TGG 0.614923 7_4:+46038550 Msa1157160:CDS
AACCGTAAAGGAGGAACTTG+AGG 0.624780 7_4:+46039015 Msa1157160:CDS
GGAAGAGATAGACAAATCAA+AGG 0.630376 7_4:+46038826 Msa1157160:CDS
CTGCTGCTTCACCTGCAACT+CGG 0.636241 7_4:+46039875 Msa1157160:CDS
CGTAAAGGAGGAACTTGAGG+CGG 0.638927 7_4:+46039018 Msa1157160:CDS
AAGCTAGAAGAGACATTGGA+AGG 0.645006 7_4:+46038273 Msa1157160:CDS
CGAGTTACAAACCGTAAAGG+AGG 0.647932 7_4:+46039006 Msa1157160:CDS
ATTTGAGATTGATACGAGTG+AGG 0.648413 7_4:+46039369 Msa1157160:CDS
AGCGCTCAAGGCGAGCGAGA+AGG 0.649761 7_4:+46039624 Msa1157160:CDS
AAGAAGGGAAAAGGTCAACA+TGG 0.660376 7_4:+46038449 Msa1157160:CDS
TAACAGCAGAGAAAAGAGTG+AGG 0.669271 7_4:+46040151 Msa1157160:three_prime_UTR
ATGGTGCTATAGTTGTAAGG+AGG 0.689249 7_4:+46038468 Msa1157160:CDS
TGCAAGAAGAGTTAGCAGTG+AGG 0.733527 7_4:+46039738 Msa1157160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTAGTCTATATGATGAT+AGG + chr7_4:46037925-46037944 Msa1157160:intron 20.0%
!!! CTATCTTTTGTTATAGAAAT+AGG + chr7_4:46038084-46038103 Msa1157160:intron 20.0%
!!! TTTGTTATAGAAATAGGTTA+TGG + chr7_4:46038090-46038109 Msa1157160:intron 20.0%
!! TTGTATATGCATTATTATTG+TGG + chr7_4:46038158-46038177 Msa1157160:intron 20.0%
!! AAACACAAGAAAAAAGTTAA+AGG + chr7_4:46038796-46038815 Msa1157160:CDS 20.0%
!! AGATATTATAACAACTAAGT+TGG + chr7_4:46039330-46039349 Msa1157160:CDS 20.0%
!! TAGATACTCATATTCAAATT+TGG - chr7_4:46039536-46039555 None:intergenic 20.0%
!!! AGAAAGAGTATTAAATCAAA+TGG + chr7_4:46039814-46039833 Msa1157160:CDS 20.0%
!! AAAGAAAGTTATTCCAAATT+TGG + chr7_4:46039927-46039946 Msa1157160:CDS 20.0%
!! AACTTTATATCTAATATGCA+AGG + chr7_4:46040082-46040101 Msa1157160:three_prime_UTR 20.0%
!!! TTATTAGTCTATATGATGAT+AGG + chr7_4:46037925-46037944 Msa1157160:intron 20.0%
!!! CTATCTTTTGTTATAGAAAT+AGG + chr7_4:46038084-46038103 Msa1157160:intron 20.0%
!!! TTTGTTATAGAAATAGGTTA+TGG + chr7_4:46038090-46038109 Msa1157160:intron 20.0%
!! TTGTATATGCATTATTATTG+TGG + chr7_4:46038158-46038177 Msa1157160:intron 20.0%
!! AAACACAAGAAAAAAGTTAA+AGG + chr7_4:46038796-46038815 Msa1157160:CDS 20.0%
!! AGATATTATAACAACTAAGT+TGG + chr7_4:46039330-46039349 Msa1157160:CDS 20.0%
!! TAGATACTCATATTCAAATT+TGG - chr7_4:46039536-46039555 None:intergenic 20.0%
!!! AGAAAGAGTATTAAATCAAA+TGG + chr7_4:46039814-46039833 Msa1157160:CDS 20.0%
!! AAAGAAAGTTATTCCAAATT+TGG + chr7_4:46039927-46039946 Msa1157160:CDS 20.0%
!! AACTTTATATCTAATATGCA+AGG + chr7_4:46040082-46040101 Msa1157160:three_prime_UTR 20.0%
!! TAAATTCATTCCTTCAGTTT+TGG + chr7_4:46037847-46037866 Msa1157160:intron 25.0%
! TATATGATGATAGGAATCAT+AGG + chr7_4:46037934-46037953 Msa1157160:intron 25.0%
! ATAGAAACATTAGAGAAGAA+GGG + chr7_4:46038434-46038453 Msa1157160:CDS 25.0%
! AGAATTGGAATATCTCAAAA+AGG + chr7_4:46038523-46038542 Msa1157160:CDS 25.0%
!!! AAAAGAAGAAGTACTTAGAA+AGG + chr7_4:46038649-46038668 Msa1157160:CDS 25.0%
! AAATGAGTTCTCATTCAAAT+TGG + chr7_4:46038772-46038791 Msa1157160:CDS 25.0%
! ATTGAATTTGGTCAAAGAAA+TGG + chr7_4:46038904-46038923 Msa1157160:CDS 25.0%
!! TGAAACTTAATTCTTTTAGC+AGG - chr7_4:46039850-46039869 None:intergenic 25.0%
!! TAGACTGGAATTTAAAACAA+TGG - chr7_4:46040005-46040024 None:intergenic 25.0%
! ATAAAGTTAGTTATATCAGC+TGG - chr7_4:46040070-46040089 None:intergenic 25.0%
!! TAAATTCATTCCTTCAGTTT+TGG + chr7_4:46037847-46037866 Msa1157160:intron 25.0%
! TATATGATGATAGGAATCAT+AGG + chr7_4:46037934-46037953 Msa1157160:intron 25.0%
! ATAGAAACATTAGAGAAGAA+GGG + chr7_4:46038434-46038453 Msa1157160:CDS 25.0%
! AGAATTGGAATATCTCAAAA+AGG + chr7_4:46038523-46038542 Msa1157160:CDS 25.0%
!!! AAAAGAAGAAGTACTTAGAA+AGG + chr7_4:46038649-46038668 Msa1157160:CDS 25.0%
! AAATGAGTTCTCATTCAAAT+TGG + chr7_4:46038772-46038791 Msa1157160:CDS 25.0%
! ATTGAATTTGGTCAAAGAAA+TGG + chr7_4:46038904-46038923 Msa1157160:CDS 25.0%
!! TGAAACTTAATTCTTTTAGC+AGG - chr7_4:46039850-46039869 None:intergenic 25.0%
!! TAGACTGGAATTTAAAACAA+TGG - chr7_4:46040005-46040024 None:intergenic 25.0%
! ATAAAGTTAGTTATATCAGC+TGG - chr7_4:46040070-46040089 None:intergenic 25.0%
AAGATGGATGATACTAAAGT+TGG + chr7_4:46037873-46037892 Msa1157160:CDS 30.0%
TTCATTGAAGAAAACTCAGA+TGG + chr7_4:46037977-46037996 Msa1157160:intron 30.0%
AAATCTCTCTTCTATGATTG+AGG + chr7_4:46038376-46038395 Msa1157160:CDS 30.0%
CATAGAAACATTAGAGAAGA+AGG + chr7_4:46038433-46038452 Msa1157160:CDS 30.0%
CACAAGAAAAAAGTTAAAGG+AGG + chr7_4:46038799-46038818 Msa1157160:CDS 30.0%
GTTGCAGATTCAATTGAATT+TGG + chr7_4:46038892-46038911 Msa1157160:CDS 30.0%
! AGATGAAAGTGTGAAACTAT+TGG + chr7_4:46038943-46038962 Msa1157160:CDS 30.0%
ATTGGAAGGAAGTTTAAGAA+AGG + chr7_4:46038961-46038980 Msa1157160:CDS 30.0%
TTGGAAGGAAGTTTAAGAAA+GGG + chr7_4:46038962-46038981 Msa1157160:CDS 30.0%
!! TTAGCTTTGATTAGAGATGA+AGG + chr7_4:46039052-46039071 Msa1157160:CDS 30.0%
GGTTCAAAATCTCAATTCAA+AGG + chr7_4:46039165-46039184 Msa1157160:CDS 30.0%
AGAAACAGATGAAGCTAAAA+TGG + chr7_4:46039288-46039307 Msa1157160:CDS 30.0%
TGTTAAAGCTCTTTCTTTCA+TGG - chr7_4:46039485-46039504 None:intergenic 30.0%
! ACTTGCTGATAAAAAAGTTG+CGG + chr7_4:46039582-46039601 Msa1157160:CDS 30.0%
AATAGTTCAAAGAGAACTCA+AGG + chr7_4:46039666-46039685 Msa1157160:CDS 30.0%
! ACTCAAGGAAAACATTTTGA+AGG + chr7_4:46039681-46039700 Msa1157160:CDS 30.0%
!! AAAACATTTTGAAGGAAGAG+AGG + chr7_4:46039689-46039708 Msa1157160:CDS 30.0%
!! AAACATTTTGAAGGAAGAGA+GGG + chr7_4:46039690-46039709 Msa1157160:CDS 30.0%
TTTCTCTTCTTAAGAGTGAA+AGG - chr7_4:46039910-46039929 None:intergenic 30.0%
CCAAATTTGGCAAAGTTATT+CGG + chr7_4:46039940-46039959 Msa1157160:CDS 30.0%
ATATCTAATATGCAAGGTGA+AGG + chr7_4:46040088-46040107 Msa1157160:three_prime_UTR 30.0%
AAGATGGATGATACTAAAGT+TGG + chr7_4:46037873-46037892 Msa1157160:CDS 30.0%
TTCATTGAAGAAAACTCAGA+TGG + chr7_4:46037977-46037996 Msa1157160:intron 30.0%
AAATCTCTCTTCTATGATTG+AGG + chr7_4:46038376-46038395 Msa1157160:CDS 30.0%
CATAGAAACATTAGAGAAGA+AGG + chr7_4:46038433-46038452 Msa1157160:CDS 30.0%
CACAAGAAAAAAGTTAAAGG+AGG + chr7_4:46038799-46038818 Msa1157160:CDS 30.0%
GTTGCAGATTCAATTGAATT+TGG + chr7_4:46038892-46038911 Msa1157160:CDS 30.0%
! AGATGAAAGTGTGAAACTAT+TGG + chr7_4:46038943-46038962 Msa1157160:CDS 30.0%
ATTGGAAGGAAGTTTAAGAA+AGG + chr7_4:46038961-46038980 Msa1157160:CDS 30.0%
TTGGAAGGAAGTTTAAGAAA+GGG + chr7_4:46038962-46038981 Msa1157160:CDS 30.0%
!! TTAGCTTTGATTAGAGATGA+AGG + chr7_4:46039052-46039071 Msa1157160:CDS 30.0%
GGTTCAAAATCTCAATTCAA+AGG + chr7_4:46039165-46039184 Msa1157160:CDS 30.0%
AGAAACAGATGAAGCTAAAA+TGG + chr7_4:46039288-46039307 Msa1157160:CDS 30.0%
TGTTAAAGCTCTTTCTTTCA+TGG - chr7_4:46039485-46039504 None:intergenic 30.0%
! ACTTGCTGATAAAAAAGTTG+CGG + chr7_4:46039582-46039601 Msa1157160:CDS 30.0%
AATAGTTCAAAGAGAACTCA+AGG + chr7_4:46039666-46039685 Msa1157160:CDS 30.0%
! ACTCAAGGAAAACATTTTGA+AGG + chr7_4:46039681-46039700 Msa1157160:CDS 30.0%
!! AAAACATTTTGAAGGAAGAG+AGG + chr7_4:46039689-46039708 Msa1157160:CDS 30.0%
!! AAACATTTTGAAGGAAGAGA+GGG + chr7_4:46039690-46039709 Msa1157160:CDS 30.0%
TTTCTCTTCTTAAGAGTGAA+AGG - chr7_4:46039910-46039929 None:intergenic 30.0%
CCAAATTTGGCAAAGTTATT+CGG + chr7_4:46039940-46039959 Msa1157160:CDS 30.0%
ATATCTAATATGCAAGGTGA+AGG + chr7_4:46040088-46040107 Msa1157160:three_prime_UTR 30.0%
GTTCTCTTGTTCTTGAAGTA+GGG - chr7_4:46038247-46038266 None:intergenic 35.0%
AGTTCTCTTGTTCTTGAAGT+AGG - chr7_4:46038248-46038267 None:intergenic 35.0%
GGAATCAAGTTACAAAGCTA+AGG + chr7_4:46038397-46038416 Msa1157160:CDS 35.0%
ACATTAGAGAAGAAGGGAAA+AGG + chr7_4:46038440-46038459 Msa1157160:CDS 35.0%
!! AACATGGTGCTATAGTTGTA+AGG + chr7_4:46038465-46038484 Msa1157160:CDS 35.0%
TGATGCTTCCATTTCTTTCT+CGG - chr7_4:46038603-46038622 None:intergenic 35.0%
AGCAAGTACTTGTTCTTCAT+TGG - chr7_4:46038687-46038706 None:intergenic 35.0%
! AGAACAAGTACTTGCTGAAT+TGG + chr7_4:46038691-46038710 Msa1157160:CDS 35.0%
!! GATTGAAGCTTTGAAAGAGT+TGG + chr7_4:46038718-46038737 Msa1157160:CDS 35.0%
AAAAAAGTTAAAGGAGGCCA+CGG + chr7_4:46038805-46038824 Msa1157160:CDS 35.0%
GGAAGAGATAGACAAATCAA+AGG + chr7_4:46038826-46038845 Msa1157160:CDS 35.0%
TGGTCAAAGAAATGGAGAAA+AGG + chr7_4:46038912-46038931 Msa1157160:CDS 35.0%
GGTCAAAGAAATGGAGAAAA+GGG + chr7_4:46038913-46038932 Msa1157160:CDS 35.0%
! GAAAGTGTGAAACTATTGGA+AGG + chr7_4:46038947-46038966 Msa1157160:CDS 35.0%
! AGATGAAGGTTTTCAGTTCA+TGG + chr7_4:46039066-46039085 Msa1157160:CDS 35.0%
! TTTTCAGTTCATGGCTTCTA+TGG + chr7_4:46039075-46039094 Msa1157160:CDS 35.0%
CTTGAAGAAAAACGATTCGT+CGG + chr7_4:46039144-46039163 Msa1157160:CDS 35.0%
! ATTTGAGATTGATACGAGTG+AGG + chr7_4:46039369-46039388 Msa1157160:CDS 35.0%
! AACAACTGAAGCTTTAGCTT+TGG + chr7_4:46039432-46039451 Msa1157160:CDS 35.0%
GGTTTACATCAAAGAGAAGA+TGG + chr7_4:46039714-46039733 Msa1157160:CDS 35.0%
CCGAATAACTTTGCCAAATT+TGG - chr7_4:46039943-46039962 None:intergenic 35.0%
TTGTGCATATGATTGTAGAC+TGG - chr7_4:46040020-46040039 None:intergenic 35.0%
CAATGAAGTTCTATTTGCCA+AGG - chr7_4:46040123-46040142 None:intergenic 35.0%
GTTCTCTTGTTCTTGAAGTA+GGG - chr7_4:46038247-46038266 None:intergenic 35.0%
AGTTCTCTTGTTCTTGAAGT+AGG - chr7_4:46038248-46038267 None:intergenic 35.0%
GGAATCAAGTTACAAAGCTA+AGG + chr7_4:46038397-46038416 Msa1157160:CDS 35.0%
ACATTAGAGAAGAAGGGAAA+AGG + chr7_4:46038440-46038459 Msa1157160:CDS 35.0%
!! AACATGGTGCTATAGTTGTA+AGG + chr7_4:46038465-46038484 Msa1157160:CDS 35.0%
TGATGCTTCCATTTCTTTCT+CGG - chr7_4:46038603-46038622 None:intergenic 35.0%
AGCAAGTACTTGTTCTTCAT+TGG - chr7_4:46038687-46038706 None:intergenic 35.0%
! AGAACAAGTACTTGCTGAAT+TGG + chr7_4:46038691-46038710 Msa1157160:CDS 35.0%
!! GATTGAAGCTTTGAAAGAGT+TGG + chr7_4:46038718-46038737 Msa1157160:CDS 35.0%
AAAAAAGTTAAAGGAGGCCA+CGG + chr7_4:46038805-46038824 Msa1157160:CDS 35.0%
GGAAGAGATAGACAAATCAA+AGG + chr7_4:46038826-46038845 Msa1157160:CDS 35.0%
TGGTCAAAGAAATGGAGAAA+AGG + chr7_4:46038912-46038931 Msa1157160:CDS 35.0%
GGTCAAAGAAATGGAGAAAA+GGG + chr7_4:46038913-46038932 Msa1157160:CDS 35.0%
! GAAAGTGTGAAACTATTGGA+AGG + chr7_4:46038947-46038966 Msa1157160:CDS 35.0%
! AGATGAAGGTTTTCAGTTCA+TGG + chr7_4:46039066-46039085 Msa1157160:CDS 35.0%
! TTTTCAGTTCATGGCTTCTA+TGG + chr7_4:46039075-46039094 Msa1157160:CDS 35.0%
CTTGAAGAAAAACGATTCGT+CGG + chr7_4:46039144-46039163 Msa1157160:CDS 35.0%
! ATTTGAGATTGATACGAGTG+AGG + chr7_4:46039369-46039388 Msa1157160:CDS 35.0%
! AACAACTGAAGCTTTAGCTT+TGG + chr7_4:46039432-46039451 Msa1157160:CDS 35.0%
GGTTTACATCAAAGAGAAGA+TGG + chr7_4:46039714-46039733 Msa1157160:CDS 35.0%
CCGAATAACTTTGCCAAATT+TGG - chr7_4:46039943-46039962 None:intergenic 35.0%
TTGTGCATATGATTGTAGAC+TGG - chr7_4:46040020-46040039 None:intergenic 35.0%
CAATGAAGTTCTATTTGCCA+AGG - chr7_4:46040123-46040142 None:intergenic 35.0%
! CCATCTTTTGCCAAAACTGA+AGG - chr7_4:46037860-46037879 None:intergenic 40.0%
!! CCTTCAGTTTTGGCAAAAGA+TGG + chr7_4:46037857-46037876 Msa1157160:intron 40.0%
! TTCCAATGTCTCTTCTAGCT+TGG - chr7_4:46038274-46038293 None:intergenic 40.0%
AAGCTAGAAGAGACATTGGA+AGG + chr7_4:46038273-46038292 Msa1157160:CDS 40.0%
! GAAGGTACAAAGAGAGTAGA+TGG + chr7_4:46038291-46038310 Msa1157160:CDS 40.0%
CAAAGCTAAGGCGAAAATGA+AGG + chr7_4:46038409-46038428 Msa1157160:CDS 40.0%
AAGAAGGGAAAAGGTCAACA+TGG + chr7_4:46038449-46038468 Msa1157160:CDS 40.0%
!! ATGGTGCTATAGTTGTAAGG+AGG + chr7_4:46038468-46038487 Msa1157160:CDS 40.0%
TGCACAAGTGATGAGAGAAT+TGG + chr7_4:46038508-46038527 Msa1157160:CDS 40.0%
GTTTAAGCTAAAGCTTGACG+TGG + chr7_4:46038550-46038569 Msa1157160:CDS 40.0%
! CTGTTTTGCAAGAGAAATCG+CGG + chr7_4:46038576-46038595 Msa1157160:CDS 40.0%
! TGTTTTGCAAGAGAAATCGC+GGG + chr7_4:46038577-46038596 Msa1157160:CDS 40.0%
CTCTTTCAAAGCTTCAATCC+TGG - chr7_4:46038717-46038736 None:intergenic 40.0%
!! TGAAGCTTTGAAAGAGTTGG+AGG + chr7_4:46038721-46038740 Msa1157160:CDS 40.0%
! TGATTTGTCTATCTCTTCCG+TGG - chr7_4:46038825-46038844 None:intergenic 40.0%
GAAATGGAGAAAAGGGTTCA+AGG + chr7_4:46038920-46038939 Msa1157160:CDS 40.0%
TTAAGAAAGGGTGACGAATC+AGG + chr7_4:46038974-46038993 Msa1157160:CDS 40.0%
TACCGAGTTACAAACCGTAA+AGG + chr7_4:46039003-46039022 Msa1157160:CDS 40.0%
CTCCTTTACGGTTTGTAACT+CGG - chr7_4:46039008-46039027 None:intergenic 40.0%
TGAGCTGAAGCATGTAACTA+AGG + chr7_4:46039111-46039130 Msa1157160:CDS 40.0%
ACGAGTGAGGAAAAATTGCA+AGG + chr7_4:46039382-46039401 Msa1157160:CDS 40.0%
TAACAGCAGAGAAAAGAGTG+AGG + chr7_4:46040151-46040170 Msa1157160:three_prime_UTR 40.0%
! CCATCTTTTGCCAAAACTGA+AGG - chr7_4:46037860-46037879 None:intergenic 40.0%
!! CCTTCAGTTTTGGCAAAAGA+TGG + chr7_4:46037857-46037876 Msa1157160:intron 40.0%
! TTCCAATGTCTCTTCTAGCT+TGG - chr7_4:46038274-46038293 None:intergenic 40.0%
AAGCTAGAAGAGACATTGGA+AGG + chr7_4:46038273-46038292 Msa1157160:CDS 40.0%
! GAAGGTACAAAGAGAGTAGA+TGG + chr7_4:46038291-46038310 Msa1157160:CDS 40.0%
CAAAGCTAAGGCGAAAATGA+AGG + chr7_4:46038409-46038428 Msa1157160:CDS 40.0%
AAGAAGGGAAAAGGTCAACA+TGG + chr7_4:46038449-46038468 Msa1157160:CDS 40.0%
!! ATGGTGCTATAGTTGTAAGG+AGG + chr7_4:46038468-46038487 Msa1157160:CDS 40.0%
TGCACAAGTGATGAGAGAAT+TGG + chr7_4:46038508-46038527 Msa1157160:CDS 40.0%
GTTTAAGCTAAAGCTTGACG+TGG + chr7_4:46038550-46038569 Msa1157160:CDS 40.0%
! CTGTTTTGCAAGAGAAATCG+CGG + chr7_4:46038576-46038595 Msa1157160:CDS 40.0%
! TGTTTTGCAAGAGAAATCGC+GGG + chr7_4:46038577-46038596 Msa1157160:CDS 40.0%
CTCTTTCAAAGCTTCAATCC+TGG - chr7_4:46038717-46038736 None:intergenic 40.0%
!! TGAAGCTTTGAAAGAGTTGG+AGG + chr7_4:46038721-46038740 Msa1157160:CDS 40.0%
! TGATTTGTCTATCTCTTCCG+TGG - chr7_4:46038825-46038844 None:intergenic 40.0%
GAAATGGAGAAAAGGGTTCA+AGG + chr7_4:46038920-46038939 Msa1157160:CDS 40.0%
TTAAGAAAGGGTGACGAATC+AGG + chr7_4:46038974-46038993 Msa1157160:CDS 40.0%
TACCGAGTTACAAACCGTAA+AGG + chr7_4:46039003-46039022 Msa1157160:CDS 40.0%
CTCCTTTACGGTTTGTAACT+CGG - chr7_4:46039008-46039027 None:intergenic 40.0%
TGAGCTGAAGCATGTAACTA+AGG + chr7_4:46039111-46039130 Msa1157160:CDS 40.0%
ACGAGTGAGGAAAAATTGCA+AGG + chr7_4:46039382-46039401 Msa1157160:CDS 40.0%
TAACAGCAGAGAAAAGAGTG+AGG + chr7_4:46040151-46040170 Msa1157160:three_prime_UTR 40.0%
! AACTCAGATGGATTTCGCAG+CGG + chr7_4:46037989-46038008 Msa1157160:intron 45.0%
CACCAAGCTAGAAGAGACAT+TGG + chr7_4:46038269-46038288 Msa1157160:CDS 45.0%
! AAGTACTTGCTGAATTGGCC+AGG + chr7_4:46038696-46038715 Msa1157160:CDS 45.0%
CGAGTTACAAACCGTAAAGG+AGG + chr7_4:46039006-46039025 Msa1157160:CDS 45.0%
AACCGTAAAGGAGGAACTTG+AGG + chr7_4:46039015-46039034 Msa1157160:CDS 45.0%
! TTTTTCCTCTGCAGCAGATG+CGG - chr7_4:46039218-46039237 None:intergenic 45.0%
! GCAAGGCGTTATGAAAGAGT+TGG + chr7_4:46039399-46039418 Msa1157160:CDS 45.0%
TAAAAAAGTTGCGGCAGCTG+AGG + chr7_4:46039591-46039610 Msa1157160:CDS 45.0%
GAGCGAGAAGGAAATACTAC+TGG + chr7_4:46039636-46039655 Msa1157160:CDS 45.0%
!! CATTTTGAAGGAAGAGAGGG+AGG + chr7_4:46039693-46039712 Msa1157160:CDS 45.0%
TGCAAGAAGAGTTAGCAGTG+AGG + chr7_4:46039738-46039757 Msa1157160:CDS 45.0%
!! GGTGAAGGATTTTCAAGCCT+TGG + chr7_4:46040103-46040122 Msa1157160:three_prime_UTR 45.0%
! AACTCAGATGGATTTCGCAG+CGG + chr7_4:46037989-46038008 Msa1157160:intron 45.0%
CACCAAGCTAGAAGAGACAT+TGG + chr7_4:46038269-46038288 Msa1157160:CDS 45.0%
! AAGTACTTGCTGAATTGGCC+AGG + chr7_4:46038696-46038715 Msa1157160:CDS 45.0%
CGAGTTACAAACCGTAAAGG+AGG + chr7_4:46039006-46039025 Msa1157160:CDS 45.0%
AACCGTAAAGGAGGAACTTG+AGG + chr7_4:46039015-46039034 Msa1157160:CDS 45.0%
! TTTTTCCTCTGCAGCAGATG+CGG - chr7_4:46039218-46039237 None:intergenic 45.0%
! GCAAGGCGTTATGAAAGAGT+TGG + chr7_4:46039399-46039418 Msa1157160:CDS 45.0%
TAAAAAAGTTGCGGCAGCTG+AGG + chr7_4:46039591-46039610 Msa1157160:CDS 45.0%
GAGCGAGAAGGAAATACTAC+TGG + chr7_4:46039636-46039655 Msa1157160:CDS 45.0%
!! CATTTTGAAGGAAGAGAGGG+AGG + chr7_4:46039693-46039712 Msa1157160:CDS 45.0%
TGCAAGAAGAGTTAGCAGTG+AGG + chr7_4:46039738-46039757 Msa1157160:CDS 45.0%
!! GGTGAAGGATTTTCAAGCCT+TGG + chr7_4:46040103-46040122 Msa1157160:three_prime_UTR 45.0%
! TTTCGCAGCGGATTTCTCAG+CGG + chr7_4:46038001-46038020 Msa1157160:intron 50.0%
CGCCTCAAGTTCCTCCTTTA+CGG - chr7_4:46039020-46039039 None:intergenic 50.0%
CGTAAAGGAGGAACTTGAGG+CGG + chr7_4:46039018-46039037 Msa1157160:CDS 50.0%
TTCTGCTGCAGCTGCATGAT+TGG - chr7_4:46039560-46039579 None:intergenic 50.0%
! TTTCGCAGCGGATTTCTCAG+CGG + chr7_4:46038001-46038020 Msa1157160:intron 50.0%
CGCCTCAAGTTCCTCCTTTA+CGG - chr7_4:46039020-46039039 None:intergenic 50.0%
CGTAAAGGAGGAACTTGAGG+CGG + chr7_4:46039018-46039037 Msa1157160:CDS 50.0%
TTCTGCTGCAGCTGCATGAT+TGG - chr7_4:46039560-46039579 None:intergenic 50.0%
ATCGCGGGCCGAGAAAGAAA+TGG + chr7_4:46038592-46038611 Msa1157160:CDS 55.0%
! GGCATGGATTGAAGCGCTCA+AGG + chr7_4:46039612-46039631 Msa1157160:CDS 55.0%
! CTGCTGCTTCACCTGCAACT+CGG + chr7_4:46039875-46039894 Msa1157160:CDS 55.0%
GGACTAATGTGCCGAGTTGC+AGG - chr7_4:46039889-46039908 None:intergenic 55.0%
ATCGCGGGCCGAGAAAGAAA+TGG + chr7_4:46038592-46038611 Msa1157160:CDS 55.0%
! GGCATGGATTGAAGCGCTCA+AGG + chr7_4:46039612-46039631 Msa1157160:CDS 55.0%
! CTGCTGCTTCACCTGCAACT+CGG + chr7_4:46039875-46039894 Msa1157160:CDS 55.0%
GGACTAATGTGCCGAGTTGC+AGG - chr7_4:46039889-46039908 None:intergenic 55.0%
AGAAGCCGCATCTGCTGCAG+AGG + chr7_4:46039210-46039229 Msa1157160:CDS 60.0%
AAGTTGCGGCAGCTGAGGCA+TGG + chr7_4:46039596-46039615 Msa1157160:CDS 60.0%
AGAAGCCGCATCTGCTGCAG+AGG + chr7_4:46039210-46039229 Msa1157160:CDS 60.0%
AAGTTGCGGCAGCTGAGGCA+TGG + chr7_4:46039596-46039615 Msa1157160:CDS 60.0%
AGCGCTCAAGGCGAGCGAGA+AGG + chr7_4:46039624-46039643 Msa1157160:CDS 65.0%
AGCGCTCAAGGCGAGCGAGA+AGG + chr7_4:46039624-46039643 Msa1157160:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 46037796 46040246 46037796 ID=Msa1157160;Name=Msa1157160
chr7_4 mRNA 46037796 46040246 46037796 ID=Msa1157160-mRNA-1;Parent=Msa1157160;Name=Msa1157160-mRNA-1;_AED=0.14;_eAED=0.15;_QI=0|0|0.33|1|0|0.33|3|253|606
chr7_4 exon 46037796 46037804 46037796 ID=Msa1157160-mRNA-1:exon:11954;Parent=Msa1157160-mRNA-1
chr7_4 exon 46037864 46037923 46037864 ID=Msa1157160-mRNA-1:exon:11955;Parent=Msa1157160-mRNA-1
chr7_4 exon 46038242 46040246 46038242 ID=Msa1157160-mRNA-1:exon:11956;Parent=Msa1157160-mRNA-1
chr7_4 CDS 46037796 46037804 46037796 ID=Msa1157160-mRNA-1:cds;Parent=Msa1157160-mRNA-1
chr7_4 CDS 46037864 46037923 46037864 ID=Msa1157160-mRNA-1:cds;Parent=Msa1157160-mRNA-1
chr7_4 CDS 46038242 46039993 46038242 ID=Msa1157160-mRNA-1:cds;Parent=Msa1157160-mRNA-1
chr7_4 three_prime_UTR 46039994 46040246 46039994 ID=Msa1157160-mRNA-1:three_prime_utr;Parent=Msa1157160-mRNA-1
Gene Sequence

>Msa1157160

ATGGTGATTTTTTGGCAAAAGATGGATGATACTAAAGTTGGTATGAGAAGAGTTAGATCAGTTAAAGATAACCCTACTTCAAGAACAAGAGAACTACACCAAGCTAGAAGAGACATTGGAAGGTACAAAGAGAGTAGATGGACAGCAGAATCTGCAAAATCTCAAGCTGAATCTGAGCTTTCAAATGCTAAAAAGACAATGAAAAATCTCTCTTCTATGATTGAGGAATCAAGTTACAAAGCTAAGGCGAAAATGAAGGACATAGAAACATTAGAGAAGAAGGGAAAAGGTCAACATGGTGCTATAGTTGTAAGGAGGAATGAGAATTATGAGTATGCACAAGTGATGAGAGAATTGGAATATCTCAAAAAGGAATTGTTTAAGCTAAAGCTTGACGTGGCTTCTGTTTTGCAAGAGAAATCGCGGGCCGAGAAAGAAATGGAAGCATCAAGCTCGAAGATGATCGATTGTTCAAGAAAAGAAGAAGTACTTAGAAAGGAGATTGAAGAAGCCAATGAAGAACAAGTACTTGCTGAATTGGCCAGGATTGAAGCTTTGAAAGAGTTGGAGGATATTAGAGTTCAAAGAGAAAGAGAAGCAAATGAGTTCTCATTCAAATTGGAAAACACAAGAAAAAAGTTAAAGGAGGCCACGGAAGAGATAGACAAATCAAAGGAACTTGAAATGAAATTAGCTATGACAGTTTCAGATGTTGATCTGTTGCAGATTCAATTGAATTTGGTCAAAGAAATGGAGAAAAGGGTTCAAGGAGATGAAAGTGTGAAACTATTGGAAGGAAGTTTAAGAAAGGGTGACGAATCAGGAGACTCTACCGAGTTACAAACCGTAAAGGAGGAACTTGAGGCGGCAACGAAAGAATTAGCTTTGATTAGAGATGAAGGTTTTCAGTTCATGGCTTCTATGGATGTTATAAGAAATGAGCTGAAGCATGTAACTAAGGAAATCGCTCGCTTGAAGAAAAACGATTCGTCGGTTCAAAATCTCAATTCAAAGGTTCTAAGAACAAAATCTAAGCTAGAAGCCGCATCTGCTGCAGAGGAAAAAGCGAGATCATTAGTAGTTAGTCTATCTCATTCTCTTGACACTCTGAAGAAAGAAACAGATGAAGCTAAAATGGAAAAAGAGCTCATATCTCAAGATATTATAACAACTAAGTTGGAAATCGAAAAAACTGAATTTGAGATTGATACGAGTGAGGAAAAATTGCAAGGCGTTATGAAAGAGTTGGAAGAAGCAAAAACAACTGAAGCTTTAGCTTTGGAGAAGCTTAAAACACTTTCTGAGACTACCATGAAAGAAAGAGCTTTAACAGCAAAACATAGTTCATCGATTACTATCTCCAAATTTGAATATGAGTATCTAACCAATCATGCAGCTGCAGCAGAAGAACTTGCTGATAAAAAAGTTGCGGCAGCTGAGGCATGGATTGAAGCGCTCAAGGCGAGCGAGAAGGAAATACTACTGGAAACAAAAATAGTTCAAAGAGAACTCAAGGAAAACATTTTGAAGGAAGAGAGGGAGGTTTACATCAAAGAGAAGATGGCTGCAAGAAGAGTTAGCAGTGAGGAGTTTGATAGAACAAGAAAACGCGAGAAGAGTTCGTCGCAGAGAGCTGTTTCTAGAAAGAGTATTAAATCAAATGGAAGTATGACTCCTGCTAAAAGAATTAAGTTTCAGAAGTCTGCTGCTTCACCTGCAACTCGGCACATTAGTCCTTTCACTCTTAAGAAGAGAAAGAAAGTTATTCCAAATTTGGCAAAGTTATTCGGTAGCAAGAAAAACACTATGTCTAAAGAGTAA

Protein sequence

>Msa1157160

MVIFWQKMDDTKVGMRRVRSVKDNPTSRTRELHQARRDIGRYKESRWTAESAKSQAESELSNAKKTMKNLSSMIEESSYKAKAKMKDIETLEKKGKGQHGAIVVRRNENYEYAQVMRELEYLKKELFKLKLDVASVLQEKSRAEKEMEASSSKMIDCSRKEEVLRKEIEEANEEQVLAELARIEALKELEDIRVQREREANEFSFKLENTRKKLKEATEEIDKSKELEMKLAMTVSDVDLLQIQLNLVKEMEKRVQGDESVKLLEGSLRKGDESGDSTELQTVKEELEAATKELALIRDEGFQFMASMDVIRNELKHVTKEIARLKKNDSSVQNLNSKVLRTKSKLEAASAAEEKARSLVVSLSHSLDTLKKETDEAKMEKELISQDIITTKLEIEKTEFEIDTSEEKLQGVMKELEEAKTTEALALEKLKTLSETTMKERALTAKHSSSITISKFEYEYLTNHAAAAEELADKKVAAAEAWIEALKASEKEILLETKIVQRELKENILKEEREVYIKEKMAARRVSSEEFDRTRKREKSSSQRAVSRKSIKSNGSMTPAKRIKFQKSAASPATRHISPFTLKKRKKVIPNLAKLFGSKKNTMSKE*