AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0040190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040190 MtrunA17_Chr1g0204861 93.939 132 2 2 1 130 1 128 3.58e-85 246
Msa0040190 MtrunA17_Chr2g0305161 34.896 192 88 10 1 161 1 186 5.22e-14 66.2
Msa0040190 MtrunA17_Chr3g0121201 53.488 43 20 0 117 159 237 279 1.04e-12 64.7
Msa0040190 MtrunA17_Chr4g0041541 28.235 170 94 7 4 161 76 229 1.15e-12 63.9
Msa0040190 MtrunA17_Chr1g0207561 46.667 45 24 0 117 161 200 244 3.62e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040190 AT2G15580.1 36.800 125 58 3 49 161 79 194 7.01e-18 77.0
Msa0040190 AT1G55530.1 57.143 42 18 0 117 158 223 264 3.53e-12 63.5
Msa0040190 AT1G55530.2 57.143 42 18 0 117 158 223 264 3.53e-12 63.5
Msa0040190 AT1G55530.3 57.143 42 18 0 117 158 190 231 4.70e-12 63.2
Msa0040190 AT3G13430.4 53.333 45 21 0 117 161 225 269 5.93e-12 62.8
Msa0040190 AT3G13430.3 53.333 45 21 0 117 161 225 269 5.93e-12 62.8
Msa0040190 AT3G13430.1 53.333 45 21 0 117 161 225 269 5.93e-12 62.8
Msa0040190 AT3G13430.2 53.333 45 21 0 117 161 225 269 5.93e-12 62.8
Msa0040190 AT3G19950.1 23.077 156 114 3 7 158 104 257 1.15e-11 62.0
Msa0040190 AT3G19950.2 45.098 51 28 0 108 158 265 315 1.68e-11 61.6
Msa0040190 AT3G19950.3 45.098 51 28 0 108 158 265 315 1.68e-11 61.6
Msa0040190 AT3G58720.2 43.137 51 29 0 111 161 166 216 2.09e-11 60.8
Msa0040190 AT3G58720.1 43.137 51 29 0 111 161 138 188 2.44e-11 60.5
Msa0040190 AT3G58720.3 43.137 51 29 0 111 161 166 216 2.70e-11 60.8
Msa0040190 AT3G58720.4 43.137 51 29 0 111 161 158 208 2.84e-11 60.5
Msa0040190 AT1G35330.1 36.170 94 51 5 78 163 84 176 3.98e-11 60.5
Msa0040190 AT5G56340.1 50.000 42 21 0 117 158 259 300 4.12e-11 60.5
Msa0040190 AT4G26400.2 44.681 47 26 0 117 163 241 287 8.31e-11 59.7
Msa0040190 AT4G26400.1 44.681 47 26 0 117 163 241 287 8.31e-11 59.7

Find 55 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCATGTTAAAGTCTTTA+AGG 0.190882 1_1:+70268682 None:intergenic
CTAATCCTGCATCTTTCTTT+TGG 0.238953 1_1:+70269228 None:intergenic
TTGATGGTTGCGTGCTCTAC+TGG 0.300182 1_1:+70270207 None:intergenic
AAATTGACCCCTCTAAGTTT+TGG 0.342451 1_1:-70270272 Msa0040190:five_prime_UTR
TCATAACCTCTTCATCTTGC+TGG 0.345809 1_1:+70269117 None:intergenic
CAAAAGAAAGATGCAGGATT+AGG 0.351739 1_1:-70269227 Msa0040190:CDS
GTGCATCCAATGATTCCTTT+AGG 0.352281 1_1:+70270008 None:intergenic
TTGTTGAGATTAGTTAAAAC+AGG 0.360846 1_1:-70268959 Msa0040190:three_prime_UTR
CTCTTACCTAAAGGAATCAT+TGG 0.362848 1_1:-70270014 Msa0040190:CDS
TTGTAAATACCAAAACTTAG+AGG 0.364195 1_1:+70270263 None:intergenic
TTTGAAAGCAGTTTCATCTA+AGG 0.366099 1_1:+70269964 None:intergenic
TTTCTTCTGTAGGCGTTGTT+TGG 0.381475 1_1:+70269940 None:intergenic
AGTCATGCGTTTATCTACTA+TGG 0.381679 1_1:-70268829 Msa0040190:three_prime_UTR
CTCAACAATAGTTCTACAAT+AGG 0.385030 1_1:+70269025 None:intergenic
AGAAGTTACTAGAAAGTTCA+TGG 0.406938 1_1:-70269202 Msa0040190:CDS
ATTCAGCATGTCTTCTCCCT+TGG 0.429232 1_1:-70269070 Msa0040190:CDS
GATACTTATGTGAGCAAGAA+AGG 0.444102 1_1:+70269093 None:intergenic
TTCATTCATGTTAATTGGGT+GGG 0.453099 1_1:-70268711 Msa0040190:three_prime_UTR
TTTCATTCATGTTAATTGGG+TGG 0.460430 1_1:-70268712 Msa0040190:three_prime_UTR
CGTTTATCTACTATGGCTAG+TGG 0.467021 1_1:-70268822 Msa0040190:three_prime_UTR
TGTAAATACCAAAACTTAGA+GGG 0.475798 1_1:+70270264 None:intergenic
AAGACTTTAACATGCATGCC+TGG 0.482144 1_1:-70268677 Msa0040190:three_prime_UTR
TGAATGGCTGGTAGGCTACC+TGG 0.496595 1_1:-70270109 Msa0040190:CDS
CAACGCCTACAGAAGAAACT+TGG 0.500663 1_1:-70269935 Msa0040190:CDS
TCAACAATAGTTCTACAATA+GGG 0.502242 1_1:+70269026 None:intergenic
CTTAGGTAAAGAAGAGTGAA+TGG 0.513291 1_1:-70270125 Msa0040190:exon
AGCTTCCAAAAGAAAGATGC+AGG 0.517931 1_1:-70269233 Msa0040190:CDS
GCTGGTAGGCTACCTGGCGT+TGG 0.518244 1_1:-70270103 Msa0040190:CDS
GGATTTGATGTACCTGGAAG+AGG 0.518796 1_1:+70269901 None:intergenic
GGTAAAGAAGAGTGAATGGC+TGG 0.520572 1_1:-70270121 Msa0040190:exon
AGATTTCCAGCAAGATGAAG+AGG 0.526085 1_1:-70269123 Msa0040190:CDS
CTACAGAGACTCTTACCTAA+AGG 0.529350 1_1:-70270023 Msa0040190:CDS
TGAGGATGTGCTTCAAGCCA+AGG 0.532471 1_1:+70269053 None:intergenic
TGATGGTTGCGTGCTCTACT+GGG 0.542806 1_1:+70270208 None:intergenic
ATTGAGATGAGAATAAGCTT+AGG 0.543333 1_1:-70270142 Msa0040190:five_prime_UTR
CGCAACCATCAATCAAAACA+TGG 0.556414 1_1:-70270196 Msa0040190:five_prime_UTR
AAGCATGTTAGTTAGTACCT+TGG 0.556879 1_1:-70268871 Msa0040190:three_prime_UTR
AGTGACCAAGTTTCTTCTGT+AGG 0.561380 1_1:+70269930 None:intergenic
CTTGGTGACAATCCAACGCC+AGG 0.563291 1_1:+70270091 None:intergenic
ACTATGGCTAGTGGGTTGTT+CGG 0.563373 1_1:-70268813 Msa0040190:three_prime_UTR
CTGGAAATCTTCTAAGCACA+CGG 0.583428 1_1:+70269136 None:intergenic
TCAACAAGTAAATATCATCA+AGG 0.589727 1_1:+70269002 None:intergenic
GTAGTAGTCATTGAAGTCCA+TGG 0.592320 1_1:+70269986 None:intergenic
GTTTATCTACTATGGCTAGT+GGG 0.595932 1_1:-70268821 Msa0040190:three_prime_UTR
TACACATTGATTAGAGTCCA+AGG 0.600793 1_1:+70268854 None:intergenic
AAGAAGAGTGAATGGCTGGT+AGG 0.606425 1_1:-70270117 Msa0040190:exon
GTAAATACCAAAACTTAGAG+GGG 0.616152 1_1:+70270265 None:intergenic
CTTTAGGTAAGAGTCTCTGT+AGG 0.619274 1_1:+70270024 None:intergenic
AGGAATCATTGGATGCACCA+TGG 0.643184 1_1:-70270003 Msa0040190:CDS
TGTTGAGATTAGTTAAAACA+GGG 0.644264 1_1:-70268958 Msa0040190:three_prime_UTR
GAGGATGTGCTTCAAGCCAA+GGG 0.644286 1_1:+70269054 None:intergenic
GTTCTACAATAGGGACAATG+AGG 0.652812 1_1:+70269035 None:intergenic
GATAAACGTGACTCATCACA+TGG 0.674611 1_1:+70268763 None:intergenic
GCATATCAAACACAACAACC+AGG 0.678834 1_1:+70268659 None:intergenic
GAAAGTTCATGGTTATTACG+TGG 0.699981 1_1:-70269191 Msa0040190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTAACAATAATTTAAT+TGG + chr1_1:70269421-70269440 None:intergenic 10.0%
!! AAATAAAATATGAATTTCAA+TGG + chr1_1:70269454-70269473 None:intergenic 10.0%
!!! AAAAAATAATTTTAGTATCT+TGG + chr1_1:70269503-70269522 None:intergenic 10.0%
!! AACAAGAAAATTTATAAATA+TGG - chr1_1:70269532-70269551 Msa0040190:intron 10.0%
!!! GATTTTAACAATAATTTAAT+TGG + chr1_1:70269421-70269440 None:intergenic 10.0%
!! AAATAAAATATGAATTTCAA+TGG + chr1_1:70269454-70269473 None:intergenic 10.0%
!!! AAAAAATAATTTTAGTATCT+TGG + chr1_1:70269503-70269522 None:intergenic 10.0%
!! AACAAGAAAATTTATAAATA+TGG - chr1_1:70269532-70269551 Msa0040190:intron 10.0%
!! AAAAAACTGTATTATTATGT+AGG + chr1_1:70269072-70269091 None:intergenic 15.0%
!!! ATTTATTTTTTTTCTCTCTA+AGG - chr1_1:70269228-70269247 Msa0040190:CDS 15.0%
!! AAAAAACTGTATTATTATGT+AGG + chr1_1:70269072-70269091 None:intergenic 15.0%
!!! ATTTATTTTTTTTCTCTCTA+AGG - chr1_1:70269228-70269247 Msa0040190:CDS 15.0%
!!! TAATTTTCTGATCTTTTTCT+TGG + chr1_1:70268879-70268898 None:intergenic 20.0%
!!! TTTTTGAAGAAACAAGAAAT+TGG - chr1_1:70269095-70269114 Msa0040190:CDS 20.0%
!! AGAATTTATACAAATTGTCT+AGG - chr1_1:70269146-70269165 Msa0040190:CDS 20.0%
!!! TTTTCTTTTCCTTCTTTTTT+GGG + chr1_1:70269689-70269708 None:intergenic 20.0%
!!! TCTTTTCATTCATGTTAATT+GGG - chr1_1:70270234-70270253 Msa0040190:five_prime_UTR 20.0%
!!! TAATTTTCTGATCTTTTTCT+TGG + chr1_1:70268879-70268898 None:intergenic 20.0%
!!! TTTTTGAAGAAACAAGAAAT+TGG - chr1_1:70269095-70269114 Msa0040190:CDS 20.0%
!! AGAATTTATACAAATTGTCT+AGG - chr1_1:70269146-70269165 Msa0040190:CDS 20.0%
!!! TTTTCTTTTCCTTCTTTTTT+GGG + chr1_1:70269689-70269708 None:intergenic 20.0%
!!! TCTTTTCATTCATGTTAATT+GGG - chr1_1:70270234-70270253 Msa0040190:five_prime_UTR 20.0%
! TGTAAATACCAAAACTTAGA+GGG + chr1_1:70268688-70268707 None:intergenic 25.0%
! TTGTAAATACCAAAACTTAG+AGG + chr1_1:70268689-70268708 None:intergenic 25.0%
!!! AAGTTTTGGTATTTACAAAG+AGG - chr1_1:70268691-70268710 Msa0040190:three_prime_UTR 25.0%
!!! ATGGATGCATTATTTTTTGT+GGG - chr1_1:70268772-70268791 Msa0040190:three_prime_UTR 25.0%
!! TGTATAAATTCTAGCTAGTT+AGG + chr1_1:70269138-70269157 None:intergenic 25.0%
! TTAAAGTAAGACTCAACATA+TGG - chr1_1:70269578-70269597 Msa0040190:intron 25.0%
!! GTTTTCTTTTCCTTCTTTTT+TGG + chr1_1:70269690-70269709 None:intergenic 25.0%
!! TCAACAATAGTTCTACAATA+GGG + chr1_1:70269926-70269945 None:intergenic 25.0%
! TCAACAAGTAAATATCATCA+AGG + chr1_1:70269950-70269969 None:intergenic 25.0%
!! TTGTTGAGATTAGTTAAAAC+AGG - chr1_1:70269990-70270009 Msa0040190:CDS 25.0%
!! TGTTGAGATTAGTTAAAACA+GGG - chr1_1:70269991-70270010 Msa0040190:CDS 25.0%
!! CTCTTTTCATTCATGTTAAT+TGG - chr1_1:70270233-70270252 Msa0040190:five_prime_UTR 25.0%
! TGTAAATACCAAAACTTAGA+GGG + chr1_1:70268688-70268707 None:intergenic 25.0%
! TTGTAAATACCAAAACTTAG+AGG + chr1_1:70268689-70268708 None:intergenic 25.0%
!!! AAGTTTTGGTATTTACAAAG+AGG - chr1_1:70268691-70268710 Msa0040190:three_prime_UTR 25.0%
!!! ATGGATGCATTATTTTTTGT+GGG - chr1_1:70268772-70268791 Msa0040190:three_prime_UTR 25.0%
!! TGTATAAATTCTAGCTAGTT+AGG + chr1_1:70269138-70269157 None:intergenic 25.0%
! TTAAAGTAAGACTCAACATA+TGG - chr1_1:70269578-70269597 Msa0040190:intron 25.0%
!! GTTTTCTTTTCCTTCTTTTT+TGG + chr1_1:70269690-70269709 None:intergenic 25.0%
!! TCAACAATAGTTCTACAATA+GGG + chr1_1:70269926-70269945 None:intergenic 25.0%
! TCAACAAGTAAATATCATCA+AGG + chr1_1:70269950-70269969 None:intergenic 25.0%
!! TTGTTGAGATTAGTTAAAAC+AGG - chr1_1:70269990-70270009 Msa0040190:CDS 25.0%
!! TGTTGAGATTAGTTAAAACA+GGG - chr1_1:70269991-70270010 Msa0040190:CDS 25.0%
!! CTCTTTTCATTCATGTTAAT+TGG - chr1_1:70270233-70270252 Msa0040190:five_prime_UTR 25.0%
! TCAATTTTCATGACTCTACA+TGG + chr1_1:70268664-70268683 None:intergenic 30.0%
GTAAATACCAAAACTTAGAG+GGG + chr1_1:70268687-70268706 None:intergenic 30.0%
!!! CATGGATGCATTATTTTTTG+TGG - chr1_1:70268771-70268790 Msa0040190:three_prime_UTR 30.0%
ATTGAGATGAGAATAAGCTT+AGG - chr1_1:70268807-70268826 Msa0040190:three_prime_UTR 30.0%
TTTGAAAGCAGTTTCATCTA+AGG + chr1_1:70268988-70269007 None:intergenic 30.0%
!!! TTTTTTTCTCTCTAAGGTGA+AGG - chr1_1:70269234-70269253 Msa0040190:CDS 30.0%
AGAAGTTACTAGAAAGTTCA+TGG - chr1_1:70269747-70269766 Msa0040190:intron 30.0%
! CTCAACAATAGTTCTACAAT+AGG + chr1_1:70269927-70269946 None:intergenic 30.0%
TTTCATTCATGTTAATTGGG+TGG - chr1_1:70270237-70270256 Msa0040190:five_prime_UTR 30.0%
TTCATTCATGTTAATTGGGT+GGG - chr1_1:70270238-70270257 Msa0040190:five_prime_UTR 30.0%
CATGCATGTTAAAGTCTTTA+AGG + chr1_1:70270270-70270289 None:intergenic 30.0%
! TCAATTTTCATGACTCTACA+TGG + chr1_1:70268664-70268683 None:intergenic 30.0%
GTAAATACCAAAACTTAGAG+GGG + chr1_1:70268687-70268706 None:intergenic 30.0%
!!! CATGGATGCATTATTTTTTG+TGG - chr1_1:70268771-70268790 Msa0040190:three_prime_UTR 30.0%
ATTGAGATGAGAATAAGCTT+AGG - chr1_1:70268807-70268826 Msa0040190:three_prime_UTR 30.0%
TTTGAAAGCAGTTTCATCTA+AGG + chr1_1:70268988-70269007 None:intergenic 30.0%
!!! TTTTTTTCTCTCTAAGGTGA+AGG - chr1_1:70269234-70269253 Msa0040190:CDS 30.0%
AGAAGTTACTAGAAAGTTCA+TGG - chr1_1:70269747-70269766 Msa0040190:intron 30.0%
! CTCAACAATAGTTCTACAAT+AGG + chr1_1:70269927-70269946 None:intergenic 30.0%
TTTCATTCATGTTAATTGGG+TGG - chr1_1:70270237-70270256 Msa0040190:five_prime_UTR 30.0%
TTCATTCATGTTAATTGGGT+GGG - chr1_1:70270238-70270257 Msa0040190:five_prime_UTR 30.0%
CATGCATGTTAAAGTCTTTA+AGG + chr1_1:70270270-70270289 None:intergenic 30.0%
! AAATTGACCCCTCTAAGTTT+TGG - chr1_1:70268677-70268696 Msa0040190:three_prime_UTR 35.0%
!!! TGCATCCATGTTTTGATTGA+TGG + chr1_1:70268761-70268780 None:intergenic 35.0%
CTTAGGTAAAGAAGAGTGAA+TGG - chr1_1:70268824-70268843 Msa0040190:three_prime_UTR 35.0%
CTCTTACCTAAAGGAATCAT+TGG - chr1_1:70268935-70268954 Msa0040190:three_prime_UTR 35.0%
TATGTAGGATTTGATGTACC+TGG + chr1_1:70269057-70269076 None:intergenic 35.0%
GAGTGTGCATAAGAAATATG+TGG + chr1_1:70269187-70269206 None:intergenic 35.0%
ACCACTTATGATGAGTTATG+AGG - chr1_1:70269317-70269336 Msa0040190:intron 35.0%
ACCTCATAACTCATCATAAG+TGG + chr1_1:70269321-70269340 None:intergenic 35.0%
CATTCTGCATACAACAATGT+CGG - chr1_1:70269341-70269360 Msa0040190:intron 35.0%
GAATTTCAATGGATATCACG+TGG + chr1_1:70269443-70269462 None:intergenic 35.0%
GAACACAATCCCAAAAAAGA+AGG - chr1_1:70269677-70269696 Msa0040190:intron 35.0%
! CTAATCCTGCATCTTTCTTT+TGG + chr1_1:70269724-70269743 None:intergenic 35.0%
CAAAAGAAAGATGCAGGATT+AGG - chr1_1:70269722-70269741 Msa0040190:intron 35.0%
GAAAGTTCATGGTTATTACG+TGG - chr1_1:70269758-70269777 Msa0040190:intron 35.0%
GATACTTATGTGAGCAAGAA+AGG + chr1_1:70269859-70269878 None:intergenic 35.0%
AAGCATGTTAGTTAGTACCT+TGG - chr1_1:70270078-70270097 Msa0040190:CDS 35.0%
! TACACATTGATTAGAGTCCA+AGG + chr1_1:70270098-70270117 None:intergenic 35.0%
AGTCATGCGTTTATCTACTA+TGG - chr1_1:70270120-70270139 Msa0040190:exon 35.0%
GTTTATCTACTATGGCTAGT+GGG - chr1_1:70270128-70270147 Msa0040190:exon 35.0%
! AAATTGACCCCTCTAAGTTT+TGG - chr1_1:70268677-70268696 Msa0040190:three_prime_UTR 35.0%
!!! TGCATCCATGTTTTGATTGA+TGG + chr1_1:70268761-70268780 None:intergenic 35.0%
CTTAGGTAAAGAAGAGTGAA+TGG - chr1_1:70268824-70268843 Msa0040190:three_prime_UTR 35.0%
CTCTTACCTAAAGGAATCAT+TGG - chr1_1:70268935-70268954 Msa0040190:three_prime_UTR 35.0%
TATGTAGGATTTGATGTACC+TGG + chr1_1:70269057-70269076 None:intergenic 35.0%
GAGTGTGCATAAGAAATATG+TGG + chr1_1:70269187-70269206 None:intergenic 35.0%
ACCACTTATGATGAGTTATG+AGG - chr1_1:70269317-70269336 Msa0040190:intron 35.0%
ACCTCATAACTCATCATAAG+TGG + chr1_1:70269321-70269340 None:intergenic 35.0%
CATTCTGCATACAACAATGT+CGG - chr1_1:70269341-70269360 Msa0040190:intron 35.0%
GAATTTCAATGGATATCACG+TGG + chr1_1:70269443-70269462 None:intergenic 35.0%
GAACACAATCCCAAAAAAGA+AGG - chr1_1:70269677-70269696 Msa0040190:intron 35.0%
! CTAATCCTGCATCTTTCTTT+TGG + chr1_1:70269724-70269743 None:intergenic 35.0%
CAAAAGAAAGATGCAGGATT+AGG - chr1_1:70269722-70269741 Msa0040190:intron 35.0%
GAAAGTTCATGGTTATTACG+TGG - chr1_1:70269758-70269777 Msa0040190:intron 35.0%
GATACTTATGTGAGCAAGAA+AGG + chr1_1:70269859-70269878 None:intergenic 35.0%
AAGCATGTTAGTTAGTACCT+TGG - chr1_1:70270078-70270097 Msa0040190:CDS 35.0%
! TACACATTGATTAGAGTCCA+AGG + chr1_1:70270098-70270117 None:intergenic 35.0%
AGTCATGCGTTTATCTACTA+TGG - chr1_1:70270120-70270139 Msa0040190:exon 35.0%
GTTTATCTACTATGGCTAGT+GGG - chr1_1:70270128-70270147 Msa0040190:exon 35.0%
CGCAACCATCAATCAAAACA+TGG - chr1_1:70268753-70268772 Msa0040190:three_prime_UTR 40.0%
CTTTAGGTAAGAGTCTCTGT+AGG + chr1_1:70268928-70268947 None:intergenic 40.0%
CTACAGAGACTCTTACCTAA+AGG - chr1_1:70268926-70268945 Msa0040190:three_prime_UTR 40.0%
GTGCATCCAATGATTCCTTT+AGG + chr1_1:70268944-70268963 None:intergenic 40.0%
GTAGTAGTCATTGAAGTCCA+TGG + chr1_1:70268966-70268985 None:intergenic 40.0%
! TTTCTTCTGTAGGCGTTGTT+TGG + chr1_1:70269012-70269031 None:intergenic 40.0%
AGTGACCAAGTTTCTTCTGT+AGG + chr1_1:70269022-70269041 None:intergenic 40.0%
!! CTCTAAGGTGAAGGAAATCA+AGG - chr1_1:70269243-70269262 Msa0040190:CDS 40.0%
AAGAATCCTACCATCTAACC+TGG - chr1_1:70269368-70269387 Msa0040190:intron 40.0%
AGCTTCCAAAAGAAAGATGC+AGG - chr1_1:70269716-70269735 Msa0040190:intron 40.0%
CTGGAAATCTTCTAAGCACA+CGG + chr1_1:70269816-70269835 None:intergenic 40.0%
AGATTTCCAGCAAGATGAAG+AGG - chr1_1:70269826-70269845 Msa0040190:intron 40.0%
TCATAACCTCTTCATCTTGC+TGG + chr1_1:70269835-70269854 None:intergenic 40.0%
GTTCTACAATAGGGACAATG+AGG + chr1_1:70269917-70269936 None:intergenic 40.0%
CGTTTATCTACTATGGCTAG+TGG - chr1_1:70270127-70270146 Msa0040190:exon 40.0%
GATAAACGTGACTCATCACA+TGG + chr1_1:70270189-70270208 None:intergenic 40.0%
AAGACTTTAACATGCATGCC+TGG - chr1_1:70270272-70270291 Msa0040190:five_prime_UTR 40.0%
GCATATCAAACACAACAACC+AGG + chr1_1:70270293-70270312 None:intergenic 40.0%
CGCAACCATCAATCAAAACA+TGG - chr1_1:70268753-70268772 Msa0040190:three_prime_UTR 40.0%
CTTTAGGTAAGAGTCTCTGT+AGG + chr1_1:70268928-70268947 None:intergenic 40.0%
CTACAGAGACTCTTACCTAA+AGG - chr1_1:70268926-70268945 Msa0040190:three_prime_UTR 40.0%
GTGCATCCAATGATTCCTTT+AGG + chr1_1:70268944-70268963 None:intergenic 40.0%
GTAGTAGTCATTGAAGTCCA+TGG + chr1_1:70268966-70268985 None:intergenic 40.0%
! TTTCTTCTGTAGGCGTTGTT+TGG + chr1_1:70269012-70269031 None:intergenic 40.0%
AGTGACCAAGTTTCTTCTGT+AGG + chr1_1:70269022-70269041 None:intergenic 40.0%
!! CTCTAAGGTGAAGGAAATCA+AGG - chr1_1:70269243-70269262 Msa0040190:CDS 40.0%
AAGAATCCTACCATCTAACC+TGG - chr1_1:70269368-70269387 Msa0040190:intron 40.0%
AGCTTCCAAAAGAAAGATGC+AGG - chr1_1:70269716-70269735 Msa0040190:intron 40.0%
CTGGAAATCTTCTAAGCACA+CGG + chr1_1:70269816-70269835 None:intergenic 40.0%
AGATTTCCAGCAAGATGAAG+AGG - chr1_1:70269826-70269845 Msa0040190:intron 40.0%
TCATAACCTCTTCATCTTGC+TGG + chr1_1:70269835-70269854 None:intergenic 40.0%
GTTCTACAATAGGGACAATG+AGG + chr1_1:70269917-70269936 None:intergenic 40.0%
CGTTTATCTACTATGGCTAG+TGG - chr1_1:70270127-70270146 Msa0040190:exon 40.0%
GATAAACGTGACTCATCACA+TGG + chr1_1:70270189-70270208 None:intergenic 40.0%
AAGACTTTAACATGCATGCC+TGG - chr1_1:70270272-70270291 Msa0040190:five_prime_UTR 40.0%
GCATATCAAACACAACAACC+AGG + chr1_1:70270293-70270312 None:intergenic 40.0%
GGTAAAGAAGAGTGAATGGC+TGG - chr1_1:70268828-70268847 Msa0040190:three_prime_UTR 45.0%
AAGAAGAGTGAATGGCTGGT+AGG - chr1_1:70268832-70268851 Msa0040190:three_prime_UTR 45.0%
AGGAATCATTGGATGCACCA+TGG - chr1_1:70268946-70268965 Msa0040190:three_prime_UTR 45.0%
CAACGCCTACAGAAGAAACT+TGG - chr1_1:70269014-70269033 Msa0040190:exon 45.0%
! GTCACTTCTTTTCCTCTTCC+AGG - chr1_1:70269036-70269055 Msa0040190:CDS 45.0%
GGATTTGATGTACCTGGAAG+AGG + chr1_1:70269051-70269070 None:intergenic 45.0%
GCACACTCACATGCATAGTA+AGG - chr1_1:70269199-70269218 Msa0040190:CDS 45.0%
ATATGTCTATAGCCACAGCC+AGG + chr1_1:70269389-70269408 None:intergenic 45.0%
ATTCAGCATGTCTTCTCCCT+TGG - chr1_1:70269879-70269898 Msa0040190:intron 45.0%
!! ACTATGGCTAGTGGGTTGTT+CGG - chr1_1:70270136-70270155 Msa0040190:five_prime_UTR 45.0%
GGTAAAGAAGAGTGAATGGC+TGG - chr1_1:70268828-70268847 Msa0040190:three_prime_UTR 45.0%
AAGAAGAGTGAATGGCTGGT+AGG - chr1_1:70268832-70268851 Msa0040190:three_prime_UTR 45.0%
AGGAATCATTGGATGCACCA+TGG - chr1_1:70268946-70268965 Msa0040190:three_prime_UTR 45.0%
CAACGCCTACAGAAGAAACT+TGG - chr1_1:70269014-70269033 Msa0040190:exon 45.0%
! GTCACTTCTTTTCCTCTTCC+AGG - chr1_1:70269036-70269055 Msa0040190:CDS 45.0%
GGATTTGATGTACCTGGAAG+AGG + chr1_1:70269051-70269070 None:intergenic 45.0%
GCACACTCACATGCATAGTA+AGG - chr1_1:70269199-70269218 Msa0040190:CDS 45.0%
ATATGTCTATAGCCACAGCC+AGG + chr1_1:70269389-70269408 None:intergenic 45.0%
ATTCAGCATGTCTTCTCCCT+TGG - chr1_1:70269879-70269898 Msa0040190:intron 45.0%
!! ACTATGGCTAGTGGGTTGTT+CGG - chr1_1:70270136-70270155 Msa0040190:five_prime_UTR 45.0%
TGATGGTTGCGTGCTCTACT+GGG + chr1_1:70268744-70268763 None:intergenic 50.0%
! TTGATGGTTGCGTGCTCTAC+TGG + chr1_1:70268745-70268764 None:intergenic 50.0%
ATAGCCACAGCCAGGTTAGA+TGG + chr1_1:70269381-70269400 None:intergenic 50.0%
GAGGATGTGCTTCAAGCCAA+GGG + chr1_1:70269898-70269917 None:intergenic 50.0%
TGAGGATGTGCTTCAAGCCA+AGG + chr1_1:70269899-70269918 None:intergenic 50.0%
TGATGGTTGCGTGCTCTACT+GGG + chr1_1:70268744-70268763 None:intergenic 50.0%
! TTGATGGTTGCGTGCTCTAC+TGG + chr1_1:70268745-70268764 None:intergenic 50.0%
ATAGCCACAGCCAGGTTAGA+TGG + chr1_1:70269381-70269400 None:intergenic 50.0%
GAGGATGTGCTTCAAGCCAA+GGG + chr1_1:70269898-70269917 None:intergenic 50.0%
TGAGGATGTGCTTCAAGCCA+AGG + chr1_1:70269899-70269918 None:intergenic 50.0%
TGAATGGCTGGTAGGCTACC+TGG - chr1_1:70268840-70268859 Msa0040190:three_prime_UTR 55.0%
! CTTGGTGACAATCCAACGCC+AGG + chr1_1:70268861-70268880 None:intergenic 55.0%
CCACAGCCAGGTTAGATGGT+AGG + chr1_1:70269377-70269396 None:intergenic 55.0%
CCTACCATCTAACCTGGCTG+TGG - chr1_1:70269374-70269393 Msa0040190:intron 55.0%
TGAATGGCTGGTAGGCTACC+TGG - chr1_1:70268840-70268859 Msa0040190:three_prime_UTR 55.0%
! CTTGGTGACAATCCAACGCC+AGG + chr1_1:70268861-70268880 None:intergenic 55.0%
CCACAGCCAGGTTAGATGGT+AGG + chr1_1:70269377-70269396 None:intergenic 55.0%
CCTACCATCTAACCTGGCTG+TGG - chr1_1:70269374-70269393 Msa0040190:intron 55.0%
GCTGGTAGGCTACCTGGCGT+TGG - chr1_1:70268846-70268865 Msa0040190:three_prime_UTR 65.0%
GCTGGTAGGCTACCTGGCGT+TGG - chr1_1:70268846-70268865 Msa0040190:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 70268624 70270347 70268624 ID=Msa0040190;Name=Msa0040190
chr1_1 mRNA 70268624 70270347 70268624 ID=Msa0040190-mRNA-1;Parent=Msa0040190;Name=Msa0040190-mRNA-1;_AED=0.14;_eAED=0.14;_QI=219|1|1|1|1|1|2|395|163
chr1_1 exon 70268624 70269295 70268624 ID=Msa0040190-mRNA-1:exon:23115;Parent=Msa0040190-mRNA-1
chr1_1 exon 70269914 70270347 70269914 ID=Msa0040190-mRNA-1:exon:23114;Parent=Msa0040190-mRNA-1
chr1_1 five_prime_UTR 70270129 70270347 70270129 ID=Msa0040190-mRNA-1:five_prime_utr;Parent=Msa0040190-mRNA-1
chr1_1 CDS 70269914 70270128 70269914 ID=Msa0040190-mRNA-1:cds;Parent=Msa0040190-mRNA-1
chr1_1 CDS 70269019 70269295 70269019 ID=Msa0040190-mRNA-1:cds;Parent=Msa0040190-mRNA-1
chr1_1 three_prime_UTR 70268624 70269018 70268624 ID=Msa0040190-mRNA-1:three_prime_utr;Parent=Msa0040190-mRNA-1
Gene Sequence

>Msa0040190

ATGGCTGGTAGGCTACCTGGCGTTGGATTGTCACCAAGAAAAAGATCAGAAAATTATCACAACAGACATGAACATTATGCTACCTACAGAGACTCTTACCTAAAGGAATCATTGGATGCACCATGGACTTCAATGACTACTACCTTAGATGAAACTGCTTTCAAAGCCAAACAACGCCTACAGAAGAAACTTGGTCACTTCTTTTCCTCTTCCAGTGAACACAATCCCAAAAAAGAAGGAAAAGAAAACAAAAGCAGCTTCCAAAAGAAAGATGCAGGATTAGGTAAGAAGTTACTAGAAAGTTCATGGTTATTACGTGGCAACAAGTTTAAGAAAGAGAGAAAAATTTGTGCCGTGTGCTTAGAAGATTTCCAGCAAGATGAAGAGGTTATGAACCTTTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAAGCACATCCTCATTGTCCCTATTGTAGAACTATTGTTGAGCCTTGA

Protein sequence

>Msa0040190

MAGRLPGVGLSPRKRSENYHNRHEHYATYRDSYLKESLDAPWTSMTTTLDETAFKAKQRLQKKLGHFFSSSSEHNPKKEGKENKSSFQKKDAGLGKKLLESSWLLRGNKFKKERKICAVCLEDFQQDEEVMNLSCSHKYHSACLLPWLEAHPHCPYCRTIVEP*