AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0184320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184320 MtrunA17_Chr5g0406211 96.916 227 7 0 1 227 100 326 1.72e-166 462
Msa0184320 MtrunA17_Chr3g0141831 36.559 186 111 4 41 221 130 313 9.25e-33 120
Msa0184320 MtrunA17_Chr1g0155531 34.946 186 114 4 41 221 133 316 4.87e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0184320 AT5G66050.2 52.632 228 103 3 1 224 5 231 1.65e-81 244
Msa0184320 AT5G66050.1 52.632 228 103 3 1 224 99 325 2.67e-80 244
Msa0184320 AT5G66050.3 52.423 227 103 3 1 223 99 324 8.96e-80 242
Msa0184320 AT5G66050.4 51.675 209 96 3 1 205 99 306 1.82e-70 218
Msa0184320 AT1G19660.2 38.462 182 105 4 41 217 137 316 7.11e-34 124
Msa0184320 AT1G19660.1 38.462 182 105 4 41 217 137 316 7.11e-34 124
Msa0184320 AT1G75380.3 37.097 186 110 4 41 221 133 316 9.51e-33 121
Msa0184320 AT1G75380.1 37.097 186 110 4 41 221 133 316 9.51e-33 121
Msa0184320 AT1G75380.4 37.097 186 110 4 41 221 133 316 9.51e-33 121
Msa0184320 AT1G75380.2 37.097 186 110 4 41 221 133 316 9.51e-33 121
Msa0184320 AT1G19660.3 36.364 176 105 4 41 211 137 310 1.16e-28 110

Find 88 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGTAATTCAAAATTTC+AGG 0.158051 1_4:+73700542 None:intergenic
GCATTTATTTGCAACATTAA+TGG 0.190657 1_4:+73699169 None:intergenic
TGAGGAAGGATTTGGGTTTA+TGG 0.190859 1_4:+73701270 None:intergenic
ATTTCTTTACTTACATATAT+TGG 0.231030 1_4:+73698992 None:intergenic
TGAAATCATTAAAAGAATTA+TGG 0.251782 1_4:-73698058 Msa0184320:three_prime_UTR
ACATGAAATGAGGAAGGATT+TGG 0.264528 1_4:+73701262 None:intergenic
TTTACTCTTTCAGGTGATAA+TGG 0.294692 1_4:-73699380 Msa0184320:intron
GTTATGATGATCGCTGAAAT+TGG 0.303922 1_4:+73701220 None:intergenic
TCATCTCAGGAGCACTAATT+AGG 0.316550 1_4:-73698482 Msa0184320:exon
AGTTCTTGAGCTACCGAATC+TGG 0.317594 1_4:+73698743 None:intergenic
TTATCAAATCAAATGTATTA+AGG 0.330207 1_4:-73698173 Msa0184320:three_prime_UTR
CTCGTACTTCCACCTGTACT+TGG 0.335343 1_4:-73698130 Msa0184320:three_prime_UTR
CAACTAGGTTATTCACAAAC+TGG 0.340562 1_4:+73700067 None:intergenic
AATGAAGAAGATGAAGATAA+AGG 0.356660 1_4:+73701482 None:intergenic
TACCGAATCTGGACCATCTA+TGG 0.358074 1_4:+73698754 None:intergenic
TATGTTCTGCCCATTGTTGT+AGG 0.358421 1_4:-73700331 Msa0184320:intron
GGAGCACTAATTAGGTTGTT+AGG 0.368218 1_4:-73698474 Msa0184320:intron
CATGAAATGAGGAAGGATTT+GGG 0.368700 1_4:+73701263 None:intergenic
CATTAAAAGAATTATGGCTT+TGG 0.371989 1_4:-73698052 Msa0184320:three_prime_UTR
TGGAGAAGAGGGAGGTGAAT+GGG 0.376687 1_4:+73701311 None:intergenic
GGGCAGAGTGCATAATAAAA+AGG 0.382577 1_4:-73698933 Msa0184320:CDS
ATGGAGAAGAGGGAGGTGAA+TGG 0.392668 1_4:+73701310 None:intergenic
TTTATGATGTATTGCTTGAC+AGG 0.409824 1_4:-73698907 Msa0184320:intron
ATGGTGGTGGCGCCGGTGAT+CGG 0.437776 1_4:+73701401 None:intergenic
GGTTATTCACAAACTGGAAC+TGG 0.445405 1_4:+73700073 None:intergenic
GGAAGCGAGAGCGTCGAGAA+TGG 0.455453 1_4:+73701291 None:intergenic
GTTTGTTACAGTGCCATAGA+TGG 0.457604 1_4:-73698767 Msa0184320:intron
GAGAGAGTGAGAAAAGGAGC+GGG 0.458782 1_4:+73701349 None:intergenic
GGCGGTGATGGTGGTGGCGC+CGG 0.461908 1_4:+73701394 None:intergenic
GAAGCTTCTATTCTTCTCTC+AGG 0.465319 1_4:-73701170 Msa0184320:intron
AGAAAAGGAGCGGGAGGTGG+CGG 0.465661 1_4:+73701358 None:intergenic
TGCCATAGATGGTCCAGATT+CGG 0.469346 1_4:-73698756 Msa0184320:CDS
TGCCATATTGCAGGATTGGC+CGG 0.472759 1_4:-73700097 Msa0184320:intron
TTAAGTAATTCAAAATTTCA+GGG 0.480298 1_4:+73700543 None:intergenic
CATGATCTAGTCTTTCAACT+AGG 0.480955 1_4:+73700052 None:intergenic
GTGAGAAAAGGAGCGGGAGG+TGG 0.482960 1_4:+73701355 None:intergenic
ATATATACAAGCTAAGGTTA+AGG 0.484532 1_4:+73698201 None:intergenic
TGCCAGATTGTACCTTAGCC+AGG 0.486892 1_4:-73699323 Msa0184320:intron
GTATTAAGGCCTAAAACCTC+TGG 0.487236 1_4:-73698159 Msa0184320:three_prime_UTR
ATAAGACTCGGCTATGGAAT+GGG 0.490306 1_4:-73698953 Msa0184320:CDS
TATAAGACTCGGCTATGGAA+TGG 0.494787 1_4:-73698954 Msa0184320:CDS
GCATACATACCTACAACAAT+GGG 0.495198 1_4:+73700322 None:intergenic
TGCAACATTAATGGCATCTG+AGG 0.495726 1_4:+73699178 None:intergenic
AGCATACATACCTACAACAA+TGG 0.501223 1_4:+73700321 None:intergenic
TCAGGGATTCATACACATCA+TGG 0.512511 1_4:+73700560 None:intergenic
TTCACAAACTGGAACTGGTC+CGG 0.513315 1_4:+73700078 None:intergenic
TTCTCCATCCAACCGATCAC+CGG 0.523038 1_4:-73701413 Msa0184320:five_prime_UTR
TTTCTCAAGATTTCTTGTGA+TGG 0.525235 1_4:-73700358 Msa0184320:CDS
AAAGGAGAGAGAGTGAGAAA+AGG 0.525993 1_4:+73701343 None:intergenic
GGCGCCGGTGATCGGTTGGA+TGG 0.527500 1_4:+73701409 None:intergenic
GAAAAGTGATATTATTAGTG+TGG 0.530123 1_4:-73699210 Msa0184320:CDS
GTGTTGAAATTCCCAAGTAC+AGG 0.531151 1_4:+73698118 None:intergenic
GCAGAAACAATAGCACACTA+TGG 0.532405 1_4:-73700514 Msa0184320:five_prime_UTR
AGCGTCGAGAATGGAGAAGA+GGG 0.537238 1_4:+73701300 None:intergenic
AAGAAGATGAAGATAAAGGT+TGG 0.538027 1_4:+73701486 None:intergenic
AAATCTTCGAAAATCATCTC+AGG 0.538245 1_4:-73698495 Msa0184320:CDS
AGAGAGAGTGAGAAAAGGAG+CGG 0.540132 1_4:+73701348 None:intergenic
TGAATTACATGAAATGAGGA+AGG 0.546750 1_4:+73701256 None:intergenic
AGAGTGAGAAAAGGAGCGGG+AGG 0.546897 1_4:+73701352 None:intergenic
TACCTGGCTAAGGTACAATC+TGG 0.547079 1_4:+73699321 None:intergenic
TGGTGGCGCCGGTGATCGGT+TGG 0.548376 1_4:+73701405 None:intergenic
GACGCTATAAGACTCGGCTA+TGG 0.548905 1_4:-73698959 Msa0184320:CDS
TCGTACTTCCACCTGTACTT+GGG 0.556416 1_4:-73698129 Msa0184320:three_prime_UTR
GCAACATTAATGGCATCTGA+GGG 0.557171 1_4:+73699179 None:intergenic
ATTTGTATGATCGGCGGTGA+TGG 0.560954 1_4:+73701382 None:intergenic
GAGCGTCGAGAATGGAGAAG+AGG 0.572608 1_4:+73701299 None:intergenic
TCCAGAAAATAGCTCGAGAA+GGG 0.576030 1_4:-73700434 Msa0184320:CDS
GAGATGAATTACATGAAATG+AGG 0.577670 1_4:+73701252 None:intergenic
TGTATGATCGGCGGTGATGG+TGG 0.586112 1_4:+73701385 None:intergenic
GGTGGCGGCATTTGTATGAT+CGG 0.587953 1_4:+73701373 None:intergenic
TATGCATTTAGCTATCAAGC+AGG 0.596160 1_4:-73698705 Msa0184320:CDS
ATAGTAGTTTATTCAGACAA+GGG 0.597464 1_4:-73700411 Msa0184320:CDS
TTGAAATTCCCAAGTACAGG+TGG 0.597652 1_4:+73698121 None:intergenic
TTCACAGACGCTATAAGACT+CGG 0.599122 1_4:-73698965 Msa0184320:CDS
TAATGTTGCAAATAAATGCA+AGG 0.602512 1_4:-73699165 Msa0184320:intron
AAGTTGTCAATACCTGGCTA+AGG 0.603032 1_4:+73699311 None:intergenic
TTCCAGAAAATAGCTCGAGA+AGG 0.604172 1_4:-73700435 Msa0184320:CDS
CAATAGCACACTATGGAATG+TGG 0.604628 1_4:-73700507 Msa0184320:exon
GATAGTAGTTTATTCAGACA+AGG 0.606215 1_4:-73700412 Msa0184320:CDS
ATGATCGGCGGTGATGGTGG+TGG 0.607304 1_4:+73701388 None:intergenic
CAGGAAAGATTTAATGACGC+AGG 0.608205 1_4:-73698686 Msa0184320:intron
AAGATGAAGATAAAGGTTGG+TGG 0.618582 1_4:+73701489 None:intergenic
GTGAATGGGAGAGAAATCAA+AGG 0.619034 1_4:+73701325 None:intergenic
CAACATTAATGGCATCTGAG+GGG 0.647803 1_4:+73699180 None:intergenic
GGCGGCATTTGTATGATCGG+CGG 0.663489 1_4:+73701376 None:intergenic
GTCGAGAATGGAGAAGAGGG+AGG 0.677739 1_4:+73701303 None:intergenic
GAAGTACGAGAATCTTCCAG+AGG 0.686347 1_4:+73698143 None:intergenic
TGAAGTGGAACAAGAGATCG+AGG 0.688028 1_4:-73700190 Msa0184320:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAATTTTGATTTTTTAA+AGG - chr1_4:73700438-73700457 Msa0184320:CDS 10.0%
!!! AGAAATTTTGATTTTTTAAA+GGG - chr1_4:73700439-73700458 Msa0184320:CDS 10.0%
!!! TTATTTTTACTAGCTTATAA+CGG + chr1_4:73698772-73698791 None:intergenic 15.0%
!! TTAAGTAATTCAAAATTTCA+GGG + chr1_4:73699016-73699035 None:intergenic 15.0%
!! TTTAAGTAATTCAAAATTTC+AGG + chr1_4:73699017-73699036 None:intergenic 15.0%
!!! GAAATTTTGATTTTTTAAAG+GGG - chr1_4:73700440-73700459 Msa0184320:CDS 15.0%
!! CAAATATAAAAATCATAAAG+AGG + chr1_4:73700531-73700550 None:intergenic 15.0%
!! ATTTCTTTACTTACATATAT+TGG + chr1_4:73700567-73700586 None:intergenic 15.0%
!! ATATATATATATACAAGCTA+AGG + chr1_4:73701364-73701383 None:intergenic 15.0%
!! TTATCAAATCAAATGTATTA+AGG - chr1_4:73701383-73701402 Msa0184320:five_prime_UTR 15.0%
!! TGAAATCATTAAAAGAATTA+TGG - chr1_4:73701498-73701517 Msa0184320:five_prime_UTR 15.0%
!! TTTGTTCAATTAAGATTACA+AGG - chr1_4:73698675-73698694 Msa0184320:intron 20.0%
!! ACAAGAATAATACAAAACTA+TGG + chr1_4:73698893-73698912 None:intergenic 20.0%
!!! TAAATTCGTGTTTTATTGAA+CGG - chr1_4:73699295-73699314 Msa0184320:intron 20.0%
!! TTATATGTTAGGTATAGTTT+AGG - chr1_4:73699630-73699649 Msa0184320:intron 20.0%
!!! TAATTCTTTCTGTTTTAGTA+TGG + chr1_4:73699993-73700012 None:intergenic 20.0%
!! ACTAAAACAGAAAGAATTAT+TGG - chr1_4:73699994-73700013 Msa0184320:intron 20.0%
!! CAATTTGAATAAAGTTAAAC+AGG - chr1_4:73700031-73700050 Msa0184320:intron 20.0%
!!! TTGTTTTATTTTACTCTTTC+AGG - chr1_4:73700167-73700186 Msa0184320:intron 20.0%
!!! AATAAAAAAGCATAACAAGA+AGG + chr1_4:73700285-73700304 None:intergenic 20.0%
!! AAAATCAAAATTTCTTGACA+GGG + chr1_4:73700434-73700453 None:intergenic 20.0%
!! AAAAATCAAAATTTCTTGAC+AGG + chr1_4:73700435-73700454 None:intergenic 20.0%
!!! TTTTTATATTTGATTTGTGC+AGG - chr1_4:73700539-73700558 Msa0184320:five_prime_UTR 20.0%
!!! ATTATGTCTTGAAAATTTTC+CGG - chr1_4:73701211-73701230 Msa0184320:five_prime_UTR 20.0%
! AATGAAGAAGATGAAGATAA+AGG + chr1_4:73698077-73698096 None:intergenic 25.0%
! AATGAAAGAGAAAAAAGAGT+GGG + chr1_4:73698442-73698461 None:intergenic 25.0%
! AAATGAAAGAGAAAAAAGAG+TGG + chr1_4:73698443-73698462 None:intergenic 25.0%
!!! TCTTTTTTCTCTTTCATTTC+AGG - chr1_4:73698444-73698463 Msa0184320:intron 25.0%
!! TTGTTGTTGTTGAGAAAATT+TGG - chr1_4:73698909-73698928 Msa0184320:CDS 25.0%
! ATAGTAGTTTATTCAGACAA+GGG - chr1_4:73699145-73699164 Msa0184320:intron 25.0%
! GAAATCTTGAGAAAAATTGT+GGG + chr1_4:73699192-73699211 None:intergenic 25.0%
! AGAAATCTTGAGAAAAATTG+TGG + chr1_4:73699193-73699212 None:intergenic 25.0%
!!! TTTTTTGACCTGTATCTTAA+TGG - chr1_4:73699392-73699411 Msa0184320:intron 25.0%
!! ATATGGCATTTTATAAGGAT+CGG + chr1_4:73699447-73699466 None:intergenic 25.0%
! TGATTCTAAGCTTATATGTT+AGG - chr1_4:73699619-73699638 Msa0184320:intron 25.0%
! ATTACATTATACCATCTTCT+TGG - chr1_4:73699701-73699720 Msa0184320:intron 25.0%
! AATCAAAATTTCCAAGAAGA+TGG + chr1_4:73699715-73699734 None:intergenic 25.0%
!!! TGAGAGATTATAGCTTTTTT+GGG + chr1_4:73699786-73699805 None:intergenic 25.0%
!!! ATGAGAGATTATAGCTTTTT+TGG + chr1_4:73699787-73699806 None:intergenic 25.0%
! GATGCAATTAGACTAAATAA+AGG + chr1_4:73699899-73699918 None:intergenic 25.0%
! TGAAATTATTTGCATGTAAG+AGG + chr1_4:73700058-73700077 None:intergenic 25.0%
! AAAACATTAGAACAAGGATA+AGG + chr1_4:73700099-73700118 None:intergenic 25.0%
! ATTTAAAAGTTGTCAATACC+TGG + chr1_4:73700254-73700273 None:intergenic 25.0%
! GAAAAGTGATATTATTAGTG+TGG - chr1_4:73700346-73700365 Msa0184320:CDS 25.0%
! GCATTTATTTGCAACATTAA+TGG + chr1_4:73700390-73700409 None:intergenic 25.0%
! TAATGTTGCAAATAAATGCA+AGG - chr1_4:73700391-73700410 Msa0184320:CDS 25.0%
! ATGATATAGCATGAATGTAA+AGG + chr1_4:73700750-73700769 None:intergenic 25.0%
! TCAAATTTCAACTATTGAAG+TGG + chr1_4:73701129-73701148 None:intergenic 25.0%
!!! TTTCCTGATAATTTTTCAAC+AGG - chr1_4:73701267-73701286 Msa0184320:five_prime_UTR 25.0%
! ATTCCTGTTGAAAAATTATC+AGG + chr1_4:73701273-73701292 None:intergenic 25.0%
! ATATATACAAGCTAAGGTTA+AGG + chr1_4:73701358-73701377 None:intergenic 25.0%
!!! TTTCATTGATTTTCATGTCA+AGG + chr1_4:73701483-73701502 None:intergenic 25.0%
! CATTAAAAGAATTATGGCTT+TGG - chr1_4:73701504-73701523 Msa0184320:five_prime_UTR 25.0%
AAGAAGATGAAGATAAAGGT+TGG + chr1_4:73698073-73698092 None:intergenic 30.0%
TGAATTACATGAAATGAGGA+AGG + chr1_4:73698303-73698322 None:intergenic 30.0%
GAGATGAATTACATGAAATG+AGG + chr1_4:73698307-73698326 None:intergenic 30.0%
AGGTAGAGGGAAAAAAATAA+AGG + chr1_4:73698555-73698574 None:intergenic 30.0%
GCTCAATTTATAAAGGTAGA+GGG + chr1_4:73698568-73698587 None:intergenic 30.0%
CTCTACCTTTATAAATTGAG+CGG - chr1_4:73698567-73698586 Msa0184320:intron 30.0%
TATTGCCGCTCAATTTATAA+AGG + chr1_4:73698575-73698594 None:intergenic 30.0%
TTAACATTGAGAGAGAAGTT+AGG - chr1_4:73698606-73698625 Msa0184320:intron 30.0%
TAACATTGAGAGAGAAGTTA+GGG - chr1_4:73698607-73698626 Msa0184320:intron 30.0%
ATGACTAAAAAAGACTCGTT+TGG + chr1_4:73698824-73698843 None:intergenic 30.0%
ATACAAAACTATGGTCTGTT+TGG + chr1_4:73698884-73698903 None:intergenic 30.0%
AGTGTGTATAATAGTAACTG+TGG - chr1_4:73698947-73698966 Msa0184320:CDS 30.0%
! TGTGGTTCTTTTGATCATTT+AGG - chr1_4:73698965-73698984 Msa0184320:CDS 30.0%
! GTTTTCAATCTGAGTTACAA+CGG - chr1_4:73699079-73699098 Msa0184320:intron 30.0%
GATAGTAGTTTATTCAGACA+AGG - chr1_4:73699144-73699163 Msa0184320:intron 30.0%
TTTCTCAAGATTTCTTGTGA+TGG - chr1_4:73699198-73699217 Msa0184320:CDS 30.0%
! CTGCAATATGGCATTTTATA+AGG + chr1_4:73699452-73699471 None:intergenic 30.0%
CTTATAAAATGCCATATTGC+AGG - chr1_4:73699450-73699469 Msa0184320:intron 30.0%
AAAGACTAGATCATGAAGTA+TGG - chr1_4:73699512-73699531 Msa0184320:intron 30.0%
TGATTTATTCTATGACCTAG+TGG + chr1_4:73699851-73699870 None:intergenic 30.0%
ATTAGAACAAGGATAAGGAT+GGG + chr1_4:73700094-73700113 None:intergenic 30.0%
TGCTTCAAAACATTAGAACA+AGG + chr1_4:73700105-73700124 None:intergenic 30.0%
TTGAAGCAATAGCAATGTAT+TGG - chr1_4:73700117-73700136 Msa0184320:intron 30.0%
TGAAGCAATAGCAATGTATT+GGG - chr1_4:73700118-73700137 Msa0184320:intron 30.0%
! TTTACTCTTTCAGGTGATAA+TGG - chr1_4:73700176-73700195 Msa0184320:intron 30.0%
!! CTAATAATATCACTTTTCCC+TGG + chr1_4:73700344-73700363 None:intergenic 30.0%
TGTCTAACTTCAAAATGCTT+AGG + chr1_4:73700505-73700524 None:intergenic 30.0%
TTTATGATGTATTGCTTGAC+AGG - chr1_4:73700649-73700668 Msa0184320:intron 30.0%
ATATAGCATGAATGTAAAGG+AGG + chr1_4:73700747-73700766 None:intergenic 30.0%
ACGCAGGTAAAATATTGTTT+GGG - chr1_4:73700886-73700905 Msa0184320:intron 30.0%
TTACACATCTGCAAGTATTA+TGG - chr1_4:73700929-73700948 Msa0184320:intron 30.0%
AAAAGTCAACAAACAAGCTT+AGG + chr1_4:73701015-73701034 None:intergenic 30.0%
AAATCTTCGAAAATCATCTC+AGG - chr1_4:73701061-73701080 Msa0184320:intron 30.0%
!! TTTTTCAACAGGAATTACTG+CGG - chr1_4:73701278-73701297 Msa0184320:five_prime_UTR 30.0%
AAGATGAAGATAAAGGTTGG+TGG + chr1_4:73698070-73698089 None:intergenic 35.0%
CATGAAATGAGGAAGGATTT+GGG + chr1_4:73698296-73698315 None:intergenic 35.0%
ACATGAAATGAGGAAGGATT+TGG + chr1_4:73698297-73698316 None:intergenic 35.0%
GTTATGATGATCGCTGAAAT+TGG + chr1_4:73698339-73698358 None:intergenic 35.0%
CGCTCAATTTATAAAGGTAG+AGG + chr1_4:73698569-73698588 None:intergenic 35.0%
!! ATTTTCTGGAAATGGTGACA+CGG + chr1_4:73699112-73699131 None:intergenic 35.0%
GCATACATACCTACAACAAT+GGG + chr1_4:73699237-73699256 None:intergenic 35.0%
AGCATACATACCTACAACAA+TGG + chr1_4:73699238-73699257 None:intergenic 35.0%
! AAAGCTTTTAGATGCTGAAG+TGG - chr1_4:73699351-73699370 Msa0184320:CDS 35.0%
AAAATGCCATATTGCAGGAT+TGG - chr1_4:73699455-73699474 Msa0184320:intron 35.0%
CAACTAGGTTATTCACAAAC+TGG + chr1_4:73699492-73699511 None:intergenic 35.0%
! CATGATCTAGTCTTTCAACT+AGG + chr1_4:73699507-73699526 None:intergenic 35.0%
TGGATGGGTACAATATGATT+TGG + chr1_4:73699831-73699850 None:intergenic 35.0%
! TATTCTATGACCTAGTGGAT+GGG + chr1_4:73699846-73699865 None:intergenic 35.0%
TTATTCTATGACCTAGTGGA+TGG + chr1_4:73699847-73699866 None:intergenic 35.0%
CATTAGAACAAGGATAAGGA+TGG + chr1_4:73700095-73700114 None:intergenic 35.0%
AGTTTATAATTCCTTCAGCC+AGG - chr1_4:73700323-73700342 Msa0184320:intron 35.0%
GTTTATAATTCCTTCAGCCA+GGG - chr1_4:73700324-73700343 Msa0184320:intron 35.0%
AAACTTGCACACAGAATCTA+TGG + chr1_4:73700724-73700743 None:intergenic 35.0%
TATGCATTTAGCTATCAAGC+AGG - chr1_4:73700851-73700870 Msa0184320:intron 35.0%
GACGCAGGTAAAATATTGTT+TGG - chr1_4:73700885-73700904 Msa0184320:intron 35.0%
AAGCTTGAATACCCAAATCT+TGG - chr1_4:73700973-73700992 Msa0184320:intron 35.0%
CCATGAAAATGCCAAGATTT+GGG + chr1_4:73700987-73701006 None:intergenic 35.0%
TCCATGAAAATGCCAAGATT+TGG + chr1_4:73700988-73701007 None:intergenic 35.0%
! ATGTCTTGAAAATTTTCCGG+TGG - chr1_4:73701214-73701233 Msa0184320:five_prime_UTR 35.0%
!! AAGTTCTGAAGAGGAACTTA+TGG - chr1_4:73701238-73701257 Msa0184320:five_prime_UTR 35.0%
AAAGGAGAGAGAGTGAGAAA+AGG + chr1_4:73698216-73698235 None:intergenic 40.0%
GTGAATGGGAGAGAAATCAA+AGG + chr1_4:73698234-73698253 None:intergenic 40.0%
! TGAGGAAGGATTTGGGTTTA+TGG + chr1_4:73698289-73698308 None:intergenic 40.0%
GAAGCTTCTATTCTTCTCTC+AGG - chr1_4:73698386-73698405 Msa0184320:intron 40.0%
TCAGGGATTCATACACATCA+TGG + chr1_4:73698999-73699018 None:intergenic 40.0%
GCAGAAACAATAGCACACTA+TGG - chr1_4:73699042-73699061 Msa0184320:intron 40.0%
CAATAGCACACTATGGAATG+TGG - chr1_4:73699049-73699068 Msa0184320:intron 40.0%
!! TTTTCTGGAAATGGTGACAC+GGG + chr1_4:73699111-73699130 None:intergenic 40.0%
!! CTCGAGCTATTTTCTGGAAA+TGG + chr1_4:73699120-73699139 None:intergenic 40.0%
TTCCAGAAAATAGCTCGAGA+AGG - chr1_4:73699121-73699140 Msa0184320:intron 40.0%
TCCAGAAAATAGCTCGAGAA+GGG - chr1_4:73699122-73699141 Msa0184320:intron 40.0%
TATGTTCTGCCCATTGTTGT+AGG - chr1_4:73699225-73699244 Msa0184320:intron 40.0%
TATGTATGCTATGCCGTGAT+AGG - chr1_4:73699248-73699267 Msa0184320:intron 40.0%
CATCGATGCATATCCTATCA+CGG + chr1_4:73699264-73699283 None:intergenic 40.0%
! AACGGTTCTTTTGTTGATGC+AGG - chr1_4:73699313-73699332 Msa0184320:intron 40.0%
GTGCACAACCATTAAGATAC+AGG + chr1_4:73699403-73699422 None:intergenic 40.0%
GGTTATTCACAAACTGGAAC+TGG + chr1_4:73699486-73699505 None:intergenic 40.0%
GCCAATGAACATTCAAGCAT+TGG - chr1_4:73699563-73699582 Msa0184320:intron 40.0%
GCCAATGCTTGAATGTTCAT+TGG + chr1_4:73699567-73699586 None:intergenic 40.0%
!!! AGCTTTTTTGGGAGTTCTCA+TGG + chr1_4:73699775-73699794 None:intergenic 40.0%
TCATATTGTACCCATCCACT+AGG - chr1_4:73699833-73699852 Msa0184320:intron 40.0%
TGCATCATTAGTCCTTCTCA+AGG - chr1_4:73699913-73699932 Msa0184320:intron 40.0%
AAGTTGTCAATACCTGGCTA+AGG + chr1_4:73700248-73700267 None:intergenic 40.0%
CAACATTAATGGCATCTGAG+GGG + chr1_4:73700379-73700398 None:intergenic 40.0%
GCAACATTAATGGCATCTGA+GGG + chr1_4:73700380-73700399 None:intergenic 40.0%
TGCAACATTAATGGCATCTG+AGG + chr1_4:73700381-73700400 None:intergenic 40.0%
TTCACAGACGCTATAAGACT+CGG - chr1_4:73700591-73700610 Msa0184320:intron 40.0%
TATAAGACTCGGCTATGGAA+TGG - chr1_4:73700602-73700621 Msa0184320:intron 40.0%
ATAAGACTCGGCTATGGAAT+GGG - chr1_4:73700603-73700622 Msa0184320:intron 40.0%
GGGCAGAGTGCATAATAAAA+AGG - chr1_4:73700623-73700642 Msa0184320:intron 40.0%
! GTTTGTTACAGTGCCATAGA+TGG - chr1_4:73700789-73700808 Msa0184320:intron 40.0%
CAGGAAAGATTTAATGACGC+AGG - chr1_4:73700870-73700889 Msa0184320:intron 40.0%
! CCCAAATCTTGGCATTTTCA+TGG - chr1_4:73700984-73701003 Msa0184320:intron 40.0%
!!! TGTTGACTTTTGCAGCTACA+TGG - chr1_4:73701024-73701043 Msa0184320:intron 40.0%
!! TCATCTCAGGAGCACTAATT+AGG - chr1_4:73701074-73701093 Msa0184320:intron 40.0%
! GGAGCACTAATTAGGTTGTT+AGG - chr1_4:73701082-73701101 Msa0184320:intron 40.0%
GTATTAAGGCCTAAAACCTC+TGG - chr1_4:73701397-73701416 Msa0184320:five_prime_UTR 40.0%
! GAGAATCTTCCAGAGGTTTT+AGG + chr1_4:73701409-73701428 None:intergenic 40.0%
TTGAAATTCCCAAGTACAGG+TGG + chr1_4:73701438-73701457 None:intergenic 40.0%
GTGTTGAAATTCCCAAGTAC+AGG + chr1_4:73701441-73701460 None:intergenic 40.0%
ATTTGTATGATCGGCGGTGA+TGG + chr1_4:73698177-73698196 None:intergenic 45.0%
AGAGAGAGTGAGAAAAGGAG+CGG + chr1_4:73698211-73698230 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAAAG+AGG + chr1_4:73698413-73698432 None:intergenic 45.0%
!! TCCCTTCTCGAGCTATTTTC+TGG + chr1_4:73699126-73699145 None:intergenic 45.0%
TGAAGTGGAACAAGAGATCG+AGG - chr1_4:73699366-73699385 Msa0184320:CDS 45.0%
TTCACAAACTGGAACTGGTC+CGG + chr1_4:73699481-73699500 None:intergenic 45.0%
CTCACACAATGTCCTTGAGA+AGG + chr1_4:73699928-73699947 None:intergenic 45.0%
TACCTGGCTAAGGTACAATC+TGG + chr1_4:73700238-73700257 None:intergenic 45.0%
!! TATCACTTTTCCCTGGCTGA+AGG + chr1_4:73700337-73700356 None:intergenic 45.0%
ACACAGAATCTATGGTGGCA+AGG + chr1_4:73700716-73700735 None:intergenic 45.0%
CTTGCACACAGAATCTATGG+TGG + chr1_4:73700721-73700740 None:intergenic 45.0%
TGCCATAGATGGTCCAGATT+CGG - chr1_4:73700800-73700819 Msa0184320:intron 45.0%
TACCGAATCTGGACCATCTA+TGG + chr1_4:73700805-73700824 None:intergenic 45.0%
AGTTCTTGAGCTACCGAATC+TGG + chr1_4:73700816-73700835 None:intergenic 45.0%
TGGGTATTCAAGCTTGCAGA+AGG + chr1_4:73700968-73700987 None:intergenic 45.0%
TCCTCTTCAGAACTTACCAC+CGG + chr1_4:73701233-73701252 None:intergenic 45.0%
GAAGTACGAGAATCTTCCAG+AGG + chr1_4:73701416-73701435 None:intergenic 45.0%
TCGTACTTCCACCTGTACTT+GGG - chr1_4:73701427-73701446 Msa0184320:five_prime_UTR 45.0%
TTCTCCATCCAACCGATCAC+CGG - chr1_4:73698143-73698162 Msa0184320:three_prime_UTR 50.0%
! GGTGGCGGCATTTGTATGAT+CGG + chr1_4:73698186-73698205 None:intergenic 50.0%
GAGAGAGTGAGAAAAGGAGC+GGG + chr1_4:73698210-73698229 None:intergenic 50.0%
TGGAGAAGAGGGAGGTGAAT+GGG + chr1_4:73698248-73698267 None:intergenic 50.0%
ATGGAGAAGAGGGAGGTGAA+TGG + chr1_4:73698249-73698268 None:intergenic 50.0%
! AGCGTCGAGAATGGAGAAGA+GGG + chr1_4:73698259-73698278 None:intergenic 50.0%
! TGCCATATTGCAGGATTGGC+CGG - chr1_4:73699459-73699478 Msa0184320:intron 50.0%
TGCCAGATTGTACCTTAGCC+AGG - chr1_4:73700233-73700252 Msa0184320:intron 50.0%
GACGCTATAAGACTCGGCTA+TGG - chr1_4:73700597-73700616 Msa0184320:intron 50.0%
CAAGGATGCTACAGGTGACA+CGG + chr1_4:73700698-73700717 None:intergenic 50.0%
TATGGTGGCAAGGATGCTAC+AGG + chr1_4:73700706-73700725 None:intergenic 50.0%
!! TCCGGTGGTAAGTTCTGAAG+AGG - chr1_4:73701229-73701248 Msa0184320:five_prime_UTR 50.0%
CTCGTACTTCCACCTGTACT+TGG - chr1_4:73701426-73701445 Msa0184320:five_prime_UTR 50.0%
! TGTATGATCGGCGGTGATGG+TGG + chr1_4:73698174-73698193 None:intergenic 55.0%
GGCGGCATTTGTATGATCGG+CGG + chr1_4:73698183-73698202 None:intergenic 55.0%
AGAGTGAGAAAAGGAGCGGG+AGG + chr1_4:73698207-73698226 None:intergenic 55.0%
GTCGAGAATGGAGAAGAGGG+AGG + chr1_4:73698256-73698275 None:intergenic 55.0%
!! GAGCGTCGAGAATGGAGAAG+AGG + chr1_4:73698260-73698279 None:intergenic 55.0%
GTCCGGCCAATCCTGCAATA+TGG + chr1_4:73699464-73699483 None:intergenic 55.0%
!! ATGATCGGCGGTGATGGTGG+TGG + chr1_4:73698171-73698190 None:intergenic 60.0%
AGAAAAGGAGCGGGAGGTGG+CGG + chr1_4:73698201-73698220 None:intergenic 60.0%
GTGAGAAAAGGAGCGGGAGG+TGG + chr1_4:73698204-73698223 None:intergenic 60.0%
!! GGAAGCGAGAGCGTCGAGAA+TGG + chr1_4:73698268-73698287 None:intergenic 60.0%
!! ATGGTGGTGGCGCCGGTGAT+CGG + chr1_4:73698158-73698177 None:intergenic 65.0%
!! GGCGCCGGTGATCGGTTGGA+TGG + chr1_4:73698150-73698169 None:intergenic 70.0%
!! TGGTGGCGCCGGTGATCGGT+TGG + chr1_4:73698154-73698173 None:intergenic 70.0%
!! GGCGGTGATGGTGGTGGCGC+CGG + chr1_4:73698165-73698184 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 73698030 73701548 73698030 ID=Msa0184320;Name=Msa0184320
chr1_4 mRNA 73698030 73701548 73698030 ID=Msa0184320-mRNA-1;Parent=Msa0184320;Name=Msa0184320-mRNA-1;_AED=0.23;_eAED=0.23;_QI=457|1|1|1|0.77|0.7|10|272|227
chr1_4 exon 73698030 73698289 73698030 ID=Msa0184320-mRNA-1:exon:25157;Parent=Msa0184320-mRNA-1
chr1_4 exon 73698475 73698539 73698475 ID=Msa0184320-mRNA-1:exon:25156;Parent=Msa0184320-mRNA-1
chr1_4 exon 73698687 73698778 73698687 ID=Msa0184320-mRNA-1:exon:25155;Parent=Msa0184320-mRNA-1
chr1_4 exon 73698908 73699017 73698908 ID=Msa0184320-mRNA-1:exon:25154;Parent=Msa0184320-mRNA-1
chr1_4 exon 73699166 73699237 73699166 ID=Msa0184320-mRNA-1:exon:25153;Parent=Msa0184320-mRNA-1
chr1_4 exon 73699324 73699389 73699324 ID=Msa0184320-mRNA-1:exon:25152;Parent=Msa0184320-mRNA-1
chr1_4 exon 73700050 73700106 73700050 ID=Msa0184320-mRNA-1:exon:25151;Parent=Msa0184320-mRNA-1
chr1_4 exon 73700191 73700243 73700191 ID=Msa0184320-mRNA-1:exon:25150;Parent=Msa0184320-mRNA-1
chr1_4 exon 73700332 73700591 73700332 ID=Msa0184320-mRNA-1:exon:25149;Parent=Msa0184320-mRNA-1
chr1_4 exon 73701171 73701548 73701171 ID=Msa0184320-mRNA-1:exon:25148;Parent=Msa0184320-mRNA-1
chr1_4 five_prime_UTR 73701171 73701548 73701171 ID=Msa0184320-mRNA-1:five_prime_utr;Parent=Msa0184320-mRNA-1
chr1_4 five_prime_UTR 73700513 73700591 73700513 ID=Msa0184320-mRNA-1:five_prime_utr;Parent=Msa0184320-mRNA-1
chr1_4 CDS 73700332 73700512 73700332 ID=Msa0184320-mRNA-1:cds;Parent=Msa0184320-mRNA-1
chr1_4 CDS 73700191 73700243 73700191 ID=Msa0184320-mRNA-1:cds;Parent=Msa0184320-mRNA-1
chr1_4 CDS 73700050 73700106 73700050 ID=Msa0184320-mRNA-1:cds;Parent=Msa0184320-mRNA-1
chr1_4 CDS 73699324 73699389 73699324 ID=Msa0184320-mRNA-1:cds;Parent=Msa0184320-mRNA-1
chr1_4 CDS 73699166 73699237 73699166 ID=Msa0184320-mRNA-1:cds;Parent=Msa0184320-mRNA-1
chr1_4 CDS 73698908 73699017 73698908 ID=Msa0184320-mRNA-1:cds;Parent=Msa0184320-mRNA-1
chr1_4 CDS 73698687 73698778 73698687 ID=Msa0184320-mRNA-1:cds;Parent=Msa0184320-mRNA-1
chr1_4 CDS 73698487 73698539 73698487 ID=Msa0184320-mRNA-1:cds;Parent=Msa0184320-mRNA-1
chr1_4 three_prime_UTR 73698475 73698486 73698475 ID=Msa0184320-mRNA-1:three_prime_utr;Parent=Msa0184320-mRNA-1
chr1_4 three_prime_UTR 73698030 73698289 73698030 ID=Msa0184320-mRNA-1:three_prime_utr;Parent=Msa0184320-mRNA-1
Gene Sequence

>Msa0184320

ATGTGGAGACATCGTTTTCAATCTGAGTTACAACGGAAATCACCCGTGTCACCATTTCCAGAAAATAGCTCGAGAAGGGATAGTAGTTTATTCAGACAAGGGTTTCTACAGCGTTTTCAGCATCCCACAATTTTTCTCAAGATTTCTTGTGATGGAGACTATGTTCTGCCCATTGTTGTAGGAAATATTGCTATTGAAAAGCTTTTAGATGCTGAAGTGGAACAAGAGATCGAGGATTGGCCGGACCAGTTCCAGTTTGTGAATAACCTAGTTGAAAGACTAGATCATGAAGTGATAATGGTGAAAATTACAGAGCGAGTAGTCAGTACTTACTTTGCCAGATTGTACCTTAGCCAGCCAGGGAAAAGTGATATTATTAGTGTGGATTTGCGCCCCTCAGATGCCATTAATGTTGCAAATAAATGCAAGGCTCCAATATATGTAAGTAAAGAAATTGTTTTCACAGACGCTATAAGACTCGGCTATGGAATGGGCAGAGTGCATAATAAAAAGGCTATTTATGATGTATTGCTTGACAGTGCCATAGATGGTCCAGATTCGGTAGCTCAAGAACTAAGTATGATGCATAATATGCATTTAGCTATCAAGCAGGAAAGATTTAATGACGCAGCTACATGGAGAGACAAACTTGAAAATCTTCGAAAATCATCTCAGGAGCACTAA

Protein sequence

>Msa0184320

MWRHRFQSELQRKSPVSPFPENSSRRDSSLFRQGFLQRFQHPTIFLKISCDGDYVLPIVVGNIAIEKLLDAEVEQEIEDWPDQFQFVNNLVERLDHEVIMVKITERVVSTYFARLYLSQPGKSDIISVDLRPSDAINVANKCKAPIYVSKEIVFTDAIRLGYGMGRVHNKKAIYDVLLDSAIDGPDSVAQELSMMHNMHLAIKQERFNDAATWRDKLENLRKSSQEH*