AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0134550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134550 MtrunA17_Chr1g0204861 93.939 132 2 2 1 130 1 128 3.58e-85 246
Msa0134550 MtrunA17_Chr2g0305161 34.896 192 88 10 1 161 1 186 5.22e-14 66.2
Msa0134550 MtrunA17_Chr3g0121201 53.488 43 20 0 117 159 237 279 1.04e-12 64.7
Msa0134550 MtrunA17_Chr4g0041541 28.235 170 94 7 4 161 76 229 1.15e-12 63.9
Msa0134550 MtrunA17_Chr1g0207561 46.667 45 24 0 117 161 200 244 3.62e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134550 AT2G15580.1 36.800 125 58 3 49 161 79 194 7.01e-18 77.0
Msa0134550 AT1G55530.1 57.143 42 18 0 117 158 223 264 3.53e-12 63.5
Msa0134550 AT1G55530.2 57.143 42 18 0 117 158 223 264 3.53e-12 63.5
Msa0134550 AT1G55530.3 57.143 42 18 0 117 158 190 231 4.70e-12 63.2
Msa0134550 AT3G13430.4 53.333 45 21 0 117 161 225 269 5.93e-12 62.8
Msa0134550 AT3G13430.3 53.333 45 21 0 117 161 225 269 5.93e-12 62.8
Msa0134550 AT3G13430.1 53.333 45 21 0 117 161 225 269 5.93e-12 62.8
Msa0134550 AT3G13430.2 53.333 45 21 0 117 161 225 269 5.93e-12 62.8
Msa0134550 AT3G19950.1 23.077 156 114 3 7 158 104 257 1.15e-11 62.0
Msa0134550 AT3G19950.2 45.098 51 28 0 108 158 265 315 1.68e-11 61.6
Msa0134550 AT3G19950.3 45.098 51 28 0 108 158 265 315 1.68e-11 61.6
Msa0134550 AT3G58720.2 43.137 51 29 0 111 161 166 216 2.09e-11 60.8
Msa0134550 AT3G58720.1 43.137 51 29 0 111 161 138 188 2.44e-11 60.5
Msa0134550 AT3G58720.3 43.137 51 29 0 111 161 166 216 2.70e-11 60.8
Msa0134550 AT3G58720.4 43.137 51 29 0 111 161 158 208 2.84e-11 60.5
Msa0134550 AT1G35330.1 36.170 94 51 5 78 163 84 176 3.98e-11 60.5
Msa0134550 AT5G56340.1 50.000 42 21 0 117 158 259 300 4.12e-11 60.5
Msa0134550 AT4G26400.2 44.681 47 26 0 117 163 241 287 8.31e-11 59.7
Msa0134550 AT4G26400.1 44.681 47 26 0 117 163 241 287 8.31e-11 59.7

Find 53 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCATGTTAAAGTCTTTA+AGG 0.190882 1_3:+66094283 None:intergenic
CTAATCCTGCATCTTTCTTT+TGG 0.238953 1_3:+66094825 None:intergenic
TTGATGGTTGCGTGCTCTAC+TGG 0.300182 1_3:+66095757 None:intergenic
AAATTGACCCCTCTAAGTTT+TGG 0.342451 1_3:-66095822 Msa0134550:five_prime_UTR
TCATAACCTCTTCATCTTGC+TGG 0.345809 1_3:+66094714 None:intergenic
CAAAAGAAAGATGCAGGATT+AGG 0.351739 1_3:-66094824 Msa0134550:CDS
GTGCATCCAATGATTCCTTT+AGG 0.352281 1_3:+66095558 None:intergenic
TTGTTGAGATTAGTTAAAAC+AGG 0.360846 1_3:-66094556 Msa0134550:three_prime_UTR
CTCTTACCTAAAGGAATCAT+TGG 0.362848 1_3:-66095564 Msa0134550:CDS
TTGTAAATACCAAAACTTAG+AGG 0.364195 1_3:+66095813 None:intergenic
TTTGAAAGCAGTTTCATCTA+AGG 0.366099 1_3:+66095514 None:intergenic
TTTCTTCTGTAGGCGTTGTT+TGG 0.381475 1_3:+66095490 None:intergenic
AGTCATGCGTTTATCTACTA+TGG 0.381679 1_3:-66094426 Msa0134550:three_prime_UTR
CTCAACAATAGTTCTACAAT+AGG 0.385030 1_3:+66094622 None:intergenic
AGAAGTTACTAGAAAGTTCA+TGG 0.406938 1_3:-66094799 Msa0134550:CDS
ATTCAGCATGTCTTCTCCCT+TGG 0.429232 1_3:-66094667 Msa0134550:CDS
GATACTTATGTGAGCAAGAA+AGG 0.444102 1_3:+66094690 None:intergenic
CGTTTATCTACTATGGCTAG+TGG 0.467021 1_3:-66094419 Msa0134550:three_prime_UTR
TGTAAATACCAAAACTTAGA+GGG 0.475798 1_3:+66095814 None:intergenic
AAGACTTTAACATGCATGCC+TGG 0.482144 1_3:-66094278 Msa0134550:three_prime_UTR
TGAATGGCTGGTAGGCTACC+TGG 0.496595 1_3:-66095659 Msa0134550:CDS
CAACGCCTACAGAAGAAACT+TGG 0.500663 1_3:-66095485 Msa0134550:CDS
TCAACAATAGTTCTACAATA+GGG 0.502242 1_3:+66094623 None:intergenic
CTTAGGTAAAGAAGAGTGAA+TGG 0.513291 1_3:-66095675 Msa0134550:exon
AGCTTCCAAAAGAAAGATGC+AGG 0.517931 1_3:-66094830 Msa0134550:CDS
GCTGGTAGGCTACCTGGCGT+TGG 0.518244 1_3:-66095653 Msa0134550:CDS
GGATTTGATGTACCTGGAAG+AGG 0.518796 1_3:+66095451 None:intergenic
GGTAAAGAAGAGTGAATGGC+TGG 0.520572 1_3:-66095671 Msa0134550:exon
AGATTTCCAGCAAGATGAAG+AGG 0.526085 1_3:-66094720 Msa0134550:CDS
CTACAGAGACTCTTACCTAA+AGG 0.529350 1_3:-66095573 Msa0134550:CDS
TGAGGATGTGCTTCAAGCCA+AGG 0.532471 1_3:+66094650 None:intergenic
TGATGGTTGCGTGCTCTACT+GGG 0.542806 1_3:+66095758 None:intergenic
ATTGAGATGAGAATAAGCTT+AGG 0.543333 1_3:-66095692 Msa0134550:five_prime_UTR
CGCAACCATCAATCAAAACA+TGG 0.556414 1_3:-66095746 Msa0134550:five_prime_UTR
AAGCATGTTAGTTAGTACCT+TGG 0.556879 1_3:-66094468 Msa0134550:three_prime_UTR
AGTGACCAAGTTTCTTCTGT+AGG 0.561380 1_3:+66095480 None:intergenic
CTTGGTGACAATCCAACGCC+AGG 0.563291 1_3:+66095641 None:intergenic
ACTATGGCTAGTGGGTTGTT+CGG 0.563373 1_3:-66094410 Msa0134550:three_prime_UTR
CTGGAAATCTTCTAAGCACA+CGG 0.583428 1_3:+66094733 None:intergenic
TCAACAAGTAAATATCATCA+AGG 0.589727 1_3:+66094599 None:intergenic
GTAGTAGTCATTGAAGTCCA+TGG 0.592320 1_3:+66095536 None:intergenic
GTTTATCTACTATGGCTAGT+GGG 0.595932 1_3:-66094418 Msa0134550:three_prime_UTR
TACACATTGATTAGAGTCCA+AGG 0.600793 1_3:+66094451 None:intergenic
AAGAAGAGTGAATGGCTGGT+AGG 0.606425 1_3:-66095667 Msa0134550:exon
GTAAATACCAAAACTTAGAG+GGG 0.616152 1_3:+66095815 None:intergenic
CTTTAGGTAAGAGTCTCTGT+AGG 0.619274 1_3:+66095574 None:intergenic
AGGAATCATTGGATGCACCA+TGG 0.643184 1_3:-66095553 Msa0134550:CDS
TGTTGAGATTAGTTAAAACA+GGG 0.644264 1_3:-66094555 Msa0134550:three_prime_UTR
GAGGATGTGCTTCAAGCCAA+GGG 0.644286 1_3:+66094651 None:intergenic
GTTCTACAATAGGGACAATG+AGG 0.652812 1_3:+66094632 None:intergenic
GATAAACGTGACTCATCACA+TGG 0.674611 1_3:+66094360 None:intergenic
GCATATCAAACACAACAACC+AGG 0.678834 1_3:+66094260 None:intergenic
GAAAGTTCATGGTTATTACG+TGG 0.699981 1_3:-66094788 Msa0134550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAAAAATTTATAAATA+TGG - chr1_3:66095086-66095105 Msa0134550:intron 0.0%
!! TTATTAAAAATTTATAAATA+TGG - chr1_3:66095086-66095105 Msa0134550:intron 0.0%
!!! GATTTTAACAATAATTTAAT+TGG + chr1_3:66095022-66095041 None:intergenic 10.0%
!!! GATTTTAACAATAATTTAAT+TGG + chr1_3:66095022-66095041 None:intergenic 10.0%
!! AAAAAACTGTATTATTATGT+AGG + chr1_3:66094673-66094692 None:intergenic 15.0%
!!! ATTTATTTTTTTTCTCTCTA+AGG - chr1_3:66094829-66094848 Msa0134550:CDS 15.0%
!!! AAAAAATAATTTTAGTTACG+TGG + chr1_3:66095044-66095063 None:intergenic 15.0%
!! AAAAAACTGTATTATTATGT+AGG + chr1_3:66094673-66094692 None:intergenic 15.0%
!!! ATTTATTTTTTTTCTCTCTA+AGG - chr1_3:66094829-66094848 Msa0134550:CDS 15.0%
!!! AAAAAATAATTTTAGTTACG+TGG + chr1_3:66095044-66095063 None:intergenic 15.0%
!!! TAATTTTCTGATCTTTTTCT+TGG + chr1_3:66094480-66094499 None:intergenic 20.0%
!!! TTTTTGAAGAAACAAGAAAT+TGG - chr1_3:66094696-66094715 Msa0134550:CDS 20.0%
!! AGAATTTATACAAATTGTCT+AGG - chr1_3:66094747-66094766 Msa0134550:CDS 20.0%
!!! TTTTCTTTTCCTTCTTTTTT+GGG + chr1_3:66095243-66095262 None:intergenic 20.0%
!!! TCTTTTCATTCATGTTAATT+GGG - chr1_3:66095788-66095807 Msa0134550:five_prime_UTR 20.0%
!!! TAATTTTCTGATCTTTTTCT+TGG + chr1_3:66094480-66094499 None:intergenic 20.0%
!!! TTTTTGAAGAAACAAGAAAT+TGG - chr1_3:66094696-66094715 Msa0134550:CDS 20.0%
!! AGAATTTATACAAATTGTCT+AGG - chr1_3:66094747-66094766 Msa0134550:CDS 20.0%
!!! TTTTCTTTTCCTTCTTTTTT+GGG + chr1_3:66095243-66095262 None:intergenic 20.0%
!!! TCTTTTCATTCATGTTAATT+GGG - chr1_3:66095788-66095807 Msa0134550:five_prime_UTR 20.0%
! TGTAAATACCAAAACTTAGA+GGG + chr1_3:66094289-66094308 None:intergenic 25.0%
! TTGTAAATACCAAAACTTAG+AGG + chr1_3:66094290-66094309 None:intergenic 25.0%
!!! AAGTTTTGGTATTTACAAAG+AGG - chr1_3:66094292-66094311 Msa0134550:three_prime_UTR 25.0%
!!! ATGGATGCATTATTTTTTGT+GGG - chr1_3:66094373-66094392 Msa0134550:three_prime_UTR 25.0%
!! TGTATAAATTCTAGCTAGTT+AGG + chr1_3:66094739-66094758 None:intergenic 25.0%
! TTAAAGTAAGACTCAACATA+TGG - chr1_3:66095132-66095151 Msa0134550:intron 25.0%
!! GTTTTCTTTTCCTTCTTTTT+TGG + chr1_3:66095244-66095263 None:intergenic 25.0%
!! TCAACAATAGTTCTACAATA+GGG + chr1_3:66095480-66095499 None:intergenic 25.0%
! TCAACAAGTAAATATCATCA+AGG + chr1_3:66095504-66095523 None:intergenic 25.0%
!! TTGTTGAGATTAGTTAAAAC+AGG - chr1_3:66095544-66095563 Msa0134550:CDS 25.0%
!! TGTTGAGATTAGTTAAAACA+GGG - chr1_3:66095545-66095564 Msa0134550:CDS 25.0%
!! CTCTTTTCATTCATGTTAAT+TGG - chr1_3:66095787-66095806 Msa0134550:five_prime_UTR 25.0%
! TGTAAATACCAAAACTTAGA+GGG + chr1_3:66094289-66094308 None:intergenic 25.0%
! TTGTAAATACCAAAACTTAG+AGG + chr1_3:66094290-66094309 None:intergenic 25.0%
!!! AAGTTTTGGTATTTACAAAG+AGG - chr1_3:66094292-66094311 Msa0134550:three_prime_UTR 25.0%
!!! ATGGATGCATTATTTTTTGT+GGG - chr1_3:66094373-66094392 Msa0134550:three_prime_UTR 25.0%
!! TGTATAAATTCTAGCTAGTT+AGG + chr1_3:66094739-66094758 None:intergenic 25.0%
! TTAAAGTAAGACTCAACATA+TGG - chr1_3:66095132-66095151 Msa0134550:intron 25.0%
!! GTTTTCTTTTCCTTCTTTTT+TGG + chr1_3:66095244-66095263 None:intergenic 25.0%
!! TCAACAATAGTTCTACAATA+GGG + chr1_3:66095480-66095499 None:intergenic 25.0%
! TCAACAAGTAAATATCATCA+AGG + chr1_3:66095504-66095523 None:intergenic 25.0%
!! TTGTTGAGATTAGTTAAAAC+AGG - chr1_3:66095544-66095563 Msa0134550:CDS 25.0%
!! TGTTGAGATTAGTTAAAACA+GGG - chr1_3:66095545-66095564 Msa0134550:CDS 25.0%
!! CTCTTTTCATTCATGTTAAT+TGG - chr1_3:66095787-66095806 Msa0134550:five_prime_UTR 25.0%
! TCAATTTTCATGACTCTACA+TGG + chr1_3:66094265-66094284 None:intergenic 30.0%
GTAAATACCAAAACTTAGAG+GGG + chr1_3:66094288-66094307 None:intergenic 30.0%
!!! CATGGATGCATTATTTTTTG+TGG - chr1_3:66094372-66094391 Msa0134550:three_prime_UTR 30.0%
ATTGAGATGAGAATAAGCTT+AGG - chr1_3:66094408-66094427 Msa0134550:three_prime_UTR 30.0%
TTTGAAAGCAGTTTCATCTA+AGG + chr1_3:66094589-66094608 None:intergenic 30.0%
!!! TTTTTTTCTCTCTAAGGTGA+AGG - chr1_3:66094835-66094854 Msa0134550:CDS 30.0%
AGAAGTTACTAGAAAGTTCA+TGG - chr1_3:66095301-66095320 Msa0134550:intron 30.0%
! CTCAACAATAGTTCTACAAT+AGG + chr1_3:66095481-66095500 None:intergenic 30.0%
CATGCATGTTAAAGTCTTTA+AGG + chr1_3:66095820-66095839 None:intergenic 30.0%
! TCAATTTTCATGACTCTACA+TGG + chr1_3:66094265-66094284 None:intergenic 30.0%
GTAAATACCAAAACTTAGAG+GGG + chr1_3:66094288-66094307 None:intergenic 30.0%
!!! CATGGATGCATTATTTTTTG+TGG - chr1_3:66094372-66094391 Msa0134550:three_prime_UTR 30.0%
ATTGAGATGAGAATAAGCTT+AGG - chr1_3:66094408-66094427 Msa0134550:three_prime_UTR 30.0%
TTTGAAAGCAGTTTCATCTA+AGG + chr1_3:66094589-66094608 None:intergenic 30.0%
!!! TTTTTTTCTCTCTAAGGTGA+AGG - chr1_3:66094835-66094854 Msa0134550:CDS 30.0%
AGAAGTTACTAGAAAGTTCA+TGG - chr1_3:66095301-66095320 Msa0134550:intron 30.0%
! CTCAACAATAGTTCTACAAT+AGG + chr1_3:66095481-66095500 None:intergenic 30.0%
CATGCATGTTAAAGTCTTTA+AGG + chr1_3:66095820-66095839 None:intergenic 30.0%
! AAATTGACCCCTCTAAGTTT+TGG - chr1_3:66094278-66094297 Msa0134550:three_prime_UTR 35.0%
!!! TGCATCCATGTTTTGATTGA+TGG + chr1_3:66094362-66094381 None:intergenic 35.0%
CTTAGGTAAAGAAGAGTGAA+TGG - chr1_3:66094425-66094444 Msa0134550:three_prime_UTR 35.0%
CTCTTACCTAAAGGAATCAT+TGG - chr1_3:66094536-66094555 Msa0134550:three_prime_UTR 35.0%
TATGTAGGATTTGATGTACC+TGG + chr1_3:66094658-66094677 None:intergenic 35.0%
GAGTGTGCATAAGAAATATG+TGG + chr1_3:66094788-66094807 None:intergenic 35.0%
ACCACTTATGATGAGTTATG+AGG - chr1_3:66094918-66094937 Msa0134550:intron 35.0%
ACCTCATAACTCATCATAAG+TGG + chr1_3:66094922-66094941 None:intergenic 35.0%
CATTCTGCATACAACAATGT+CGG - chr1_3:66094942-66094961 Msa0134550:intron 35.0%
GAACACAATCCCAAAAAAGA+AGG - chr1_3:66095231-66095250 Msa0134550:intron 35.0%
! CTAATCCTGCATCTTTCTTT+TGG + chr1_3:66095278-66095297 None:intergenic 35.0%
CAAAAGAAAGATGCAGGATT+AGG - chr1_3:66095276-66095295 Msa0134550:intron 35.0%
GAAAGTTCATGGTTATTACG+TGG - chr1_3:66095312-66095331 Msa0134550:intron 35.0%
GATACTTATGTGAGCAAGAA+AGG + chr1_3:66095413-66095432 None:intergenic 35.0%
AAGCATGTTAGTTAGTACCT+TGG - chr1_3:66095632-66095651 Msa0134550:CDS 35.0%
! TACACATTGATTAGAGTCCA+AGG + chr1_3:66095652-66095671 None:intergenic 35.0%
AGTCATGCGTTTATCTACTA+TGG - chr1_3:66095674-66095693 Msa0134550:exon 35.0%
GTTTATCTACTATGGCTAGT+GGG - chr1_3:66095682-66095701 Msa0134550:five_prime_UTR 35.0%
! AAATTGACCCCTCTAAGTTT+TGG - chr1_3:66094278-66094297 Msa0134550:three_prime_UTR 35.0%
!!! TGCATCCATGTTTTGATTGA+TGG + chr1_3:66094362-66094381 None:intergenic 35.0%
CTTAGGTAAAGAAGAGTGAA+TGG - chr1_3:66094425-66094444 Msa0134550:three_prime_UTR 35.0%
CTCTTACCTAAAGGAATCAT+TGG - chr1_3:66094536-66094555 Msa0134550:three_prime_UTR 35.0%
TATGTAGGATTTGATGTACC+TGG + chr1_3:66094658-66094677 None:intergenic 35.0%
GAGTGTGCATAAGAAATATG+TGG + chr1_3:66094788-66094807 None:intergenic 35.0%
ACCACTTATGATGAGTTATG+AGG - chr1_3:66094918-66094937 Msa0134550:intron 35.0%
ACCTCATAACTCATCATAAG+TGG + chr1_3:66094922-66094941 None:intergenic 35.0%
CATTCTGCATACAACAATGT+CGG - chr1_3:66094942-66094961 Msa0134550:intron 35.0%
GAACACAATCCCAAAAAAGA+AGG - chr1_3:66095231-66095250 Msa0134550:intron 35.0%
! CTAATCCTGCATCTTTCTTT+TGG + chr1_3:66095278-66095297 None:intergenic 35.0%
CAAAAGAAAGATGCAGGATT+AGG - chr1_3:66095276-66095295 Msa0134550:intron 35.0%
GAAAGTTCATGGTTATTACG+TGG - chr1_3:66095312-66095331 Msa0134550:intron 35.0%
GATACTTATGTGAGCAAGAA+AGG + chr1_3:66095413-66095432 None:intergenic 35.0%
AAGCATGTTAGTTAGTACCT+TGG - chr1_3:66095632-66095651 Msa0134550:CDS 35.0%
! TACACATTGATTAGAGTCCA+AGG + chr1_3:66095652-66095671 None:intergenic 35.0%
AGTCATGCGTTTATCTACTA+TGG - chr1_3:66095674-66095693 Msa0134550:exon 35.0%
GTTTATCTACTATGGCTAGT+GGG - chr1_3:66095682-66095701 Msa0134550:five_prime_UTR 35.0%
CGCAACCATCAATCAAAACA+TGG - chr1_3:66094354-66094373 Msa0134550:three_prime_UTR 40.0%
CTTTAGGTAAGAGTCTCTGT+AGG + chr1_3:66094529-66094548 None:intergenic 40.0%
CTACAGAGACTCTTACCTAA+AGG - chr1_3:66094527-66094546 Msa0134550:three_prime_UTR 40.0%
GTGCATCCAATGATTCCTTT+AGG + chr1_3:66094545-66094564 None:intergenic 40.0%
GTAGTAGTCATTGAAGTCCA+TGG + chr1_3:66094567-66094586 None:intergenic 40.0%
! TTTCTTCTGTAGGCGTTGTT+TGG + chr1_3:66094613-66094632 None:intergenic 40.0%
AGTGACCAAGTTTCTTCTGT+AGG + chr1_3:66094623-66094642 None:intergenic 40.0%
!! CTCTAAGGTGAAGGAAATCA+AGG - chr1_3:66094844-66094863 Msa0134550:CDS 40.0%
AAGAATCCTACCATCTAACC+TGG - chr1_3:66094969-66094988 Msa0134550:intron 40.0%
AGCTTCCAAAAGAAAGATGC+AGG - chr1_3:66095270-66095289 Msa0134550:intron 40.0%
CTGGAAATCTTCTAAGCACA+CGG + chr1_3:66095370-66095389 None:intergenic 40.0%
AGATTTCCAGCAAGATGAAG+AGG - chr1_3:66095380-66095399 Msa0134550:intron 40.0%
TCATAACCTCTTCATCTTGC+TGG + chr1_3:66095389-66095408 None:intergenic 40.0%
GTTCTACAATAGGGACAATG+AGG + chr1_3:66095471-66095490 None:intergenic 40.0%
CGTTTATCTACTATGGCTAG+TGG - chr1_3:66095681-66095700 Msa0134550:five_prime_UTR 40.0%
GATAAACGTGACTCATCACA+TGG + chr1_3:66095743-66095762 None:intergenic 40.0%
AAGACTTTAACATGCATGCC+TGG - chr1_3:66095822-66095841 Msa0134550:five_prime_UTR 40.0%
GCATATCAAACACAACAACC+AGG + chr1_3:66095843-66095862 None:intergenic 40.0%
CGCAACCATCAATCAAAACA+TGG - chr1_3:66094354-66094373 Msa0134550:three_prime_UTR 40.0%
CTTTAGGTAAGAGTCTCTGT+AGG + chr1_3:66094529-66094548 None:intergenic 40.0%
CTACAGAGACTCTTACCTAA+AGG - chr1_3:66094527-66094546 Msa0134550:three_prime_UTR 40.0%
GTGCATCCAATGATTCCTTT+AGG + chr1_3:66094545-66094564 None:intergenic 40.0%
GTAGTAGTCATTGAAGTCCA+TGG + chr1_3:66094567-66094586 None:intergenic 40.0%
! TTTCTTCTGTAGGCGTTGTT+TGG + chr1_3:66094613-66094632 None:intergenic 40.0%
AGTGACCAAGTTTCTTCTGT+AGG + chr1_3:66094623-66094642 None:intergenic 40.0%
!! CTCTAAGGTGAAGGAAATCA+AGG - chr1_3:66094844-66094863 Msa0134550:CDS 40.0%
AAGAATCCTACCATCTAACC+TGG - chr1_3:66094969-66094988 Msa0134550:intron 40.0%
AGCTTCCAAAAGAAAGATGC+AGG - chr1_3:66095270-66095289 Msa0134550:intron 40.0%
CTGGAAATCTTCTAAGCACA+CGG + chr1_3:66095370-66095389 None:intergenic 40.0%
AGATTTCCAGCAAGATGAAG+AGG - chr1_3:66095380-66095399 Msa0134550:intron 40.0%
TCATAACCTCTTCATCTTGC+TGG + chr1_3:66095389-66095408 None:intergenic 40.0%
GTTCTACAATAGGGACAATG+AGG + chr1_3:66095471-66095490 None:intergenic 40.0%
CGTTTATCTACTATGGCTAG+TGG - chr1_3:66095681-66095700 Msa0134550:five_prime_UTR 40.0%
GATAAACGTGACTCATCACA+TGG + chr1_3:66095743-66095762 None:intergenic 40.0%
AAGACTTTAACATGCATGCC+TGG - chr1_3:66095822-66095841 Msa0134550:five_prime_UTR 40.0%
GCATATCAAACACAACAACC+AGG + chr1_3:66095843-66095862 None:intergenic 40.0%
GGTAAAGAAGAGTGAATGGC+TGG - chr1_3:66094429-66094448 Msa0134550:three_prime_UTR 45.0%
AAGAAGAGTGAATGGCTGGT+AGG - chr1_3:66094433-66094452 Msa0134550:three_prime_UTR 45.0%
AGGAATCATTGGATGCACCA+TGG - chr1_3:66094547-66094566 Msa0134550:three_prime_UTR 45.0%
CAACGCCTACAGAAGAAACT+TGG - chr1_3:66094615-66094634 Msa0134550:exon 45.0%
! GTCACTTCTTTTCCTCTTCC+AGG - chr1_3:66094637-66094656 Msa0134550:CDS 45.0%
GGATTTGATGTACCTGGAAG+AGG + chr1_3:66094652-66094671 None:intergenic 45.0%
GCACACTCACATGCATAGTA+AGG - chr1_3:66094800-66094819 Msa0134550:CDS 45.0%
ATATGTCTATAGCCACAGCC+AGG + chr1_3:66094990-66095009 None:intergenic 45.0%
ATTCAGCATGTCTTCTCCCT+TGG - chr1_3:66095433-66095452 Msa0134550:intron 45.0%
!! ACTATGGCTAGTGGGTTGTT+CGG - chr1_3:66095690-66095709 Msa0134550:five_prime_UTR 45.0%
GGTAAAGAAGAGTGAATGGC+TGG - chr1_3:66094429-66094448 Msa0134550:three_prime_UTR 45.0%
AAGAAGAGTGAATGGCTGGT+AGG - chr1_3:66094433-66094452 Msa0134550:three_prime_UTR 45.0%
AGGAATCATTGGATGCACCA+TGG - chr1_3:66094547-66094566 Msa0134550:three_prime_UTR 45.0%
CAACGCCTACAGAAGAAACT+TGG - chr1_3:66094615-66094634 Msa0134550:exon 45.0%
! GTCACTTCTTTTCCTCTTCC+AGG - chr1_3:66094637-66094656 Msa0134550:CDS 45.0%
GGATTTGATGTACCTGGAAG+AGG + chr1_3:66094652-66094671 None:intergenic 45.0%
GCACACTCACATGCATAGTA+AGG - chr1_3:66094800-66094819 Msa0134550:CDS 45.0%
ATATGTCTATAGCCACAGCC+AGG + chr1_3:66094990-66095009 None:intergenic 45.0%
ATTCAGCATGTCTTCTCCCT+TGG - chr1_3:66095433-66095452 Msa0134550:intron 45.0%
!! ACTATGGCTAGTGGGTTGTT+CGG - chr1_3:66095690-66095709 Msa0134550:five_prime_UTR 45.0%
TGATGGTTGCGTGCTCTACT+GGG + chr1_3:66094345-66094364 None:intergenic 50.0%
! TTGATGGTTGCGTGCTCTAC+TGG + chr1_3:66094346-66094365 None:intergenic 50.0%
ATAGCCACAGCCAGGTTAGA+TGG + chr1_3:66094982-66095001 None:intergenic 50.0%
GAGGATGTGCTTCAAGCCAA+GGG + chr1_3:66095452-66095471 None:intergenic 50.0%
TGAGGATGTGCTTCAAGCCA+AGG + chr1_3:66095453-66095472 None:intergenic 50.0%
TGATGGTTGCGTGCTCTACT+GGG + chr1_3:66094345-66094364 None:intergenic 50.0%
! TTGATGGTTGCGTGCTCTAC+TGG + chr1_3:66094346-66094365 None:intergenic 50.0%
ATAGCCACAGCCAGGTTAGA+TGG + chr1_3:66094982-66095001 None:intergenic 50.0%
GAGGATGTGCTTCAAGCCAA+GGG + chr1_3:66095452-66095471 None:intergenic 50.0%
TGAGGATGTGCTTCAAGCCA+AGG + chr1_3:66095453-66095472 None:intergenic 50.0%
TGAATGGCTGGTAGGCTACC+TGG - chr1_3:66094441-66094460 Msa0134550:three_prime_UTR 55.0%
! CTTGGTGACAATCCAACGCC+AGG + chr1_3:66094462-66094481 None:intergenic 55.0%
CCACAGCCAGGTTAGATGGT+AGG + chr1_3:66094978-66094997 None:intergenic 55.0%
CCTACCATCTAACCTGGCTG+TGG - chr1_3:66094975-66094994 Msa0134550:intron 55.0%
TGAATGGCTGGTAGGCTACC+TGG - chr1_3:66094441-66094460 Msa0134550:three_prime_UTR 55.0%
! CTTGGTGACAATCCAACGCC+AGG + chr1_3:66094462-66094481 None:intergenic 55.0%
CCACAGCCAGGTTAGATGGT+AGG + chr1_3:66094978-66094997 None:intergenic 55.0%
CCTACCATCTAACCTGGCTG+TGG - chr1_3:66094975-66094994 Msa0134550:intron 55.0%
GCTGGTAGGCTACCTGGCGT+TGG - chr1_3:66094447-66094466 Msa0134550:three_prime_UTR 65.0%
GCTGGTAGGCTACCTGGCGT+TGG - chr1_3:66094447-66094466 Msa0134550:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 66094225 66095897 66094225 ID=Msa0134550;Name=Msa0134550
chr1_3 mRNA 66094225 66095897 66094225 ID=Msa0134550-mRNA-1;Parent=Msa0134550;Name=Msa0134550-mRNA-1;_AED=0.13;_eAED=0.13;_QI=219|1|1|1|1|1|2|391|163
chr1_3 exon 66094225 66094892 66094225 ID=Msa0134550-mRNA-1:exon:22538;Parent=Msa0134550-mRNA-1
chr1_3 exon 66095464 66095897 66095464 ID=Msa0134550-mRNA-1:exon:22537;Parent=Msa0134550-mRNA-1
chr1_3 five_prime_UTR 66095679 66095897 66095679 ID=Msa0134550-mRNA-1:five_prime_utr;Parent=Msa0134550-mRNA-1
chr1_3 CDS 66095464 66095678 66095464 ID=Msa0134550-mRNA-1:cds;Parent=Msa0134550-mRNA-1
chr1_3 CDS 66094616 66094892 66094616 ID=Msa0134550-mRNA-1:cds;Parent=Msa0134550-mRNA-1
chr1_3 three_prime_UTR 66094225 66094615 66094225 ID=Msa0134550-mRNA-1:three_prime_utr;Parent=Msa0134550-mRNA-1
Gene Sequence

>Msa0134550

ATGGCTGGTAGGCTACCTGGCGTTGGATTGTCACCAAGAAAAAGATCAGAAAATTATCACAACAGACATGAACATTATGCTACCTACAGAGACTCTTACCTAAAGGAATCATTGGATGCACCATGGACTTCAATGACTACTACCTTAGATGAAACTGCTTTCAAAGCCAAACAACGCCTACAGAAGAAACTTGGTCACTTCTTTTCCTCTTCCAGTGAACACAATCCCAAAAAAGAAGGAAAAGAAAACAAAAGCAGCTTCCAAAAGAAAGATGCAGGATTAGGTAAGAAGTTACTAGAAAGTTCATGGTTATTACGTGGCAACAAGTTTAAGAAAGAGAGAAAAATTTGTGCCGTGTGCTTAGAAGATTTCCAGCAAGATGAAGAGGTTATGAACCTTTCTTGCTCACATAAGTATCATTCAGCATGTCTTCTCCCTTGGCTTGAAGCACATCCTCATTGTCCCTATTGTAGAACTATTGTTGAGCCTTGA

Protein sequence

>Msa0134550

MAGRLPGVGLSPRKRSENYHNRHEHYATYRDSYLKESLDAPWTSMTTTLDETAFKAKQRLQKKLGHFFSSSSEHNPKKEGKENKSSFQKKDAGLGKKLLESSWLLRGNKFKKERKICAVCLEDFQQDEEVMNLSCSHKYHSACLLPWLEAHPHCPYCRTIVEP*