Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691860 | XP_013456718.2 | 95.844 | 770 | 27 | 1 | 1 | 770 | 1 | 765 | 0.0 | 1531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691860 | sp|B5WWZ8|FAO1_LOTJA | 78.600 | 757 | 152 | 7 | 10 | 765 | 1 | 748 | 0.0 | 1207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691860 | A0A396I8H5 | 95.822 | 766 | 27 | 1 | 1 | 766 | 1 | 761 | 0.0 | 1523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007230 | Msa0691860 | 0.829916 | 3.939037e-55 | -8.615850e-47 |
| Msa0055590 | Msa0691860 | 0.834187 | 3.465339e-56 | -8.615850e-47 |
| Msa0609090 | Msa0691860 | 0.962607 | 4.438702e-121 | -8.615850e-47 |
| Msa0626280 | Msa0691860 | 0.804692 | 1.912256e-49 | -8.615850e-47 |
| Msa0649800 | Msa0691860 | 0.934527 | 3.515744e-96 | -8.615850e-47 |
| Msa0691860 | Msa0708460 | 0.811904 | 5.542430e-51 | -8.615850e-47 |
| Msa0691860 | Msa0718470 | 0.824857 | 6.429624e-54 | -8.615850e-47 |
| Msa0691860 | Msa0734340 | 0.837051 | 6.529515e-57 | -8.615850e-47 |
| Msa0691860 | Msa0752580 | 0.800120 | 1.672951e-48 | -8.615850e-47 |
| Msa0691860 | Msa0756480 | 0.811205 | 7.864937e-51 | -8.615850e-47 |
| Msa0691860 | Msa0801100 | 0.838641 | 2.548376e-57 | -8.615850e-47 |
| Msa0691860 | Msa0853860 | 0.821277 | 4.397207e-53 | -8.615850e-47 |
| Msa0691860 | Msa0921630 | 0.808003 | 3.834248e-50 | -8.615850e-47 |
| Msa0691860 | Msa0968730 | 0.806836 | 6.780135e-50 | -8.615850e-47 |
| Msa0691860 | Msa1009000 | 0.809691 | 1.669872e-50 | -8.615850e-47 |
| Msa0691860 | Msa1028270 | 0.815312 | 9.859624e-52 | -8.615850e-47 |
| Msa0691860 | Msa1081600 | 0.803789 | 2.947488e-49 | -8.615850e-47 |
| Msa0691860 | Msa1083410 | 0.804046 | 2.606921e-49 | -8.615850e-47 |
| Msa0691860 | Msa1112370 | 0.814135 | 1.797012e-51 | -8.615850e-47 |
| Msa0691860 | Msa1166370 | 0.813171 | 2.929645e-51 | -8.615850e-47 |
| Msa0691860 | Msa1201990 | 0.811621 | 6.389320e-51 | -8.615850e-47 |
| Msa0691860 | Msa1221260 | 0.811876 | 5.621225e-51 | -8.615850e-47 |
| Msa0691860 | Msa1254470 | 0.805849 | 1.094553e-49 | -8.615850e-47 |
| Msa0691860 | Msa1329990 | 0.812234 | 4.696294e-51 | -8.615850e-47 |
| Msa0691860 | Msa1337340 | 0.809960 | 1.461002e-50 | -8.615850e-47 |
| Msa0691860 | Msa1343340 | 0.821327 | 4.282845e-53 | -8.615850e-47 |
| Msa0691860 | Msa1363890 | 0.837375 | 5.393582e-57 | -8.615850e-47 |
| Msa0691860 | Msa1393410 | 0.806981 | 6.316846e-50 | -8.615850e-47 |
| Msa0691860 | Msa1435420 | 0.806763 | 7.025503e-50 | -8.615850e-47 |
| Msa0140910 | Msa0691860 | 0.804884 | 1.743797e-49 | -8.615850e-47 |
| Msa0211010 | Msa0691860 | 0.802492 | 5.467180e-49 | -8.615850e-47 |
| Msa0217400 | Msa0691860 | 0.803303 | 3.718052e-49 | -8.615850e-47 |
| Msa0227800 | Msa0691860 | 0.816383 | 5.689405e-52 | -8.615850e-47 |
| Msa0404870 | Msa0691860 | 0.816935 | 4.277782e-52 | -8.615850e-47 |
| Msa0422500 | Msa0691860 | 0.844224 | 8.627810e-59 | -8.615850e-47 |
| Msa0450350 | Msa0691860 | 0.838661 | 2.518009e-57 | -8.615850e-47 |
| Msa0261260 | Msa0691860 | 0.806194 | 9.258745e-50 | -8.615850e-47 |
| Msa0266000 | Msa0691860 | -0.803684 | 3.099079e-49 | -8.615850e-47 |
| Msa0290650 | Msa0691860 | 0.801986 | 6.951645e-49 | -8.615850e-47 |
| Msa0299200 | Msa0691860 | 0.820177 | 7.872081e-53 | -8.615850e-47 |
| Msa0304990 | Msa0691860 | 0.821186 | 4.615382e-53 | -8.615850e-47 |
| Msa0351230 | Msa0691860 | 0.803786 | 2.952385e-49 | -8.615850e-47 |
| Msa0358710 | Msa0691860 | 0.809774 | 1.602199e-50 | -8.615850e-47 |
| Msa0492740 | Msa0691860 | 0.823453 | 1.373918e-53 | -8.615850e-47 |
| Msa0492880 | Msa0691860 | 0.835632 | 1.499065e-56 | -8.615850e-47 |
| Msa0511250 | Msa0691860 | 0.845328 | 4.349457e-59 | -8.615850e-47 |
| Msa0570640 | Msa0691860 | 0.837809 | 4.173867e-57 | -8.615850e-47 |
| Msa0581340 | Msa0691860 | 0.812965 | 3.251511e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691860 | MtrunA17_Chr4g0041761 | 95.822 | 766 | 27 | 1 | 1 | 766 | 1 | 761 | 0.0 | 1523 |
| Msa0691860 | MtrunA17_Chr7g0261561 | 56.972 | 753 | 299 | 11 | 13 | 761 | 3 | 734 | 0.0 | 842 |
| Msa0691860 | MtrunA17_Chr1g0187391 | 58.148 | 583 | 176 | 8 | 180 | 761 | 3 | 518 | 0.0 | 676 |
| Msa0691860 | MtrunA17_Chr5g0408241 | 43.329 | 787 | 379 | 17 | 21 | 763 | 64 | 827 | 0.0 | 591 |
| Msa0691860 | MtrunA17_Chr8g0369761 | 41.517 | 778 | 387 | 13 | 28 | 763 | 57 | 808 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691860 | AT3G23410.1 | 59.621 | 738 | 285 | 6 | 31 | 764 | 15 | 743 | 0.0 | 872 |
| Msa0691860 | AT4G28570.1 | 56.728 | 758 | 303 | 7 | 9 | 761 | 5 | 742 | 0.0 | 845 |
| Msa0691860 | AT4G28570.2 | 56.728 | 758 | 303 | 7 | 9 | 761 | 5 | 742 | 0.0 | 845 |
| Msa0691860 | AT3G23410.2 | 61.799 | 678 | 249 | 4 | 90 | 764 | 5 | 675 | 0.0 | 842 |
| Msa0691860 | AT1G03990.1 | 49.215 | 764 | 366 | 12 | 8 | 763 | 5 | 754 | 0.0 | 736 |
| Msa0691860 | AT4G19380.2 | 42.520 | 762 | 384 | 15 | 27 | 763 | 34 | 766 | 0.0 | 552 |
| Msa0691860 | AT4G19380.1 | 42.762 | 753 | 377 | 15 | 36 | 763 | 1 | 724 | 0.0 | 548 |
Find 150 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACATTTCTTCTTCTTTC+TGG | 0.073106 | 4_4:-60171198 | None:intergenic |
| GTCCCTTGTTTCTCTCCTTT+TGG | 0.180580 | 4_4:-60171071 | None:intergenic |
| TCTTGTTTGAAAATAATTAT+AGG | 0.260541 | 4_4:+60171165 | Msa0691860:CDS |
| CAACTTCTCAAGCTTGTCTT+TGG | 0.271024 | 4_4:+60170111 | Msa0691860:CDS |
| TGATTCCCTGGTGAATTTCT+TGG | 0.279412 | 4_4:-60171020 | None:intergenic |
| TTTCTTCTTCTTTCTGGTAT+TGG | 0.293147 | 4_4:-60171192 | None:intergenic |
| GTGATTAAATGTGCTGTTCT+TGG | 0.295870 | 4_4:-60172026 | None:intergenic |
| ATGGACCAACAATATGAAAA+TGG | 0.302883 | 4_4:+60170711 | Msa0691860:CDS |
| CTTGAGAAGTTGTGGATAAA+TGG | 0.306281 | 4_4:-60170100 | None:intergenic |
| AAACCACTAGAGATCATTAA+TGG | 0.311728 | 4_4:-60171317 | None:intergenic |
| TATTGTGGTTCATGTGGTTA+TGG | 0.314221 | 4_4:+60171044 | Msa0691860:CDS |
| TATTGATAAGGGTGATTCTA+TGG | 0.316225 | 4_4:+60170014 | Msa0691860:CDS |
| CAGAAAGAAGAAGAAATGTT+TGG | 0.347440 | 4_4:+60171199 | Msa0691860:CDS |
| TAAGCGAATGCGAGTCTAAA+AGG | 0.353718 | 4_4:-60170184 | None:intergenic |
| TTCTAGTGATGAATAATCTT+CGG | 0.371885 | 4_4:-60170679 | None:intergenic |
| TCAATATATCCATGGGAATC+AGG | 0.373653 | 4_4:+60171972 | Msa0691860:CDS |
| CATTGTCACCAGGTGAGAAT+TGG | 0.377821 | 4_4:+60172291 | Msa0691860:CDS |
| TGGCTTATATCAACAAGGTT+GGG | 0.380283 | 4_4:+60170034 | Msa0691860:CDS |
| ATATGAAAAGAATTAATATA+TGG | 0.387736 | 4_4:-60168497 | None:intergenic |
| GTATACTTCTGCTCATCAAA+TGG | 0.389845 | 4_4:+60172319 | Msa0691860:CDS |
| TATACTTCTGCTCATCAAAT+GGG | 0.393187 | 4_4:+60172320 | Msa0691860:CDS |
| TGCTCTGTCTTAGTAAGAAA+TGG | 0.394689 | 4_4:+60170077 | Msa0691860:CDS |
| GACTCTACTGTTTAAAGTCT+TGG | 0.401679 | 4_4:-60171231 | None:intergenic |
| TCTCTAGAACAATCACTTTG+TGG | 0.413037 | 4_4:-60170638 | None:intergenic |
| CAAAATCAAGTACTAAGAAA+AGG | 0.418237 | 4_4:+60170963 | Msa0691860:CDS |
| CAGAAGCAGTAATATTGATA+AGG | 0.422013 | 4_4:+60170002 | Msa0691860:CDS |
| TCTAGTGATGAATAATCTTC+GGG | 0.422485 | 4_4:-60170678 | None:intergenic |
| GATGCAGTAGTTGTTGGTTC+TGG | 0.425266 | 4_4:+60170573 | Msa0691860:CDS |
| CACAAAATGTGTTGAAAGAA+TGG | 0.430850 | 4_4:+60170832 | Msa0691860:CDS |
| AGAAAGAAGAAGAAATGTTT+GGG | 0.431123 | 4_4:+60171200 | Msa0691860:CDS |
| TTGGGGACTTTGTTGATTTG+TGG | 0.432818 | 4_4:+60170052 | Msa0691860:CDS |
| TGTGGTTATGGTTGTCCAAA+AGG | 0.434505 | 4_4:+60171056 | Msa0691860:CDS |
| GTAGTTGTTGGTTCTGGCTG+TGG | 0.438334 | 4_4:+60170579 | Msa0691860:CDS |
| AGAAAAGGGTGCCAAAATCT+TGG | 0.440950 | 4_4:+60170978 | Msa0691860:CDS |
| CTTGTAGATGCTGTTGAAAA+AGG | 0.445193 | 4_4:+60171107 | Msa0691860:CDS |
| GAAGGTGCTGTTGATGAAAA+TGG | 0.445503 | 4_4:+60172371 | Msa0691860:CDS |
| GTTGACTGAATAGTGATCAT+AGG | 0.452880 | 4_4:-60172464 | None:intergenic |
| AAAGGTGCTGTGATCATAAC+AGG | 0.453948 | 4_4:+60171125 | Msa0691860:CDS |
| GTGGTGGTTCAGCTGTTAAT+TGG | 0.455365 | 4_4:+60170790 | Msa0691860:CDS |
| GCATCATCCATTGGCAATGA+AGG | 0.456373 | 4_4:-60168697 | None:intergenic |
| ACCTGCAGAAATTGTCACTT+TGG | 0.458514 | 4_4:-60171276 | None:intergenic |
| CAGAAATGTTGAAGAAAGAC+TGG | 0.461374 | 4_4:-60168768 | None:intergenic |
| ACACACGTATATACCTCGTC+AGG | 0.462997 | 4_4:-60168808 | None:intergenic |
| TATCCGATGGCTTTCCATGC+CGG | 0.465397 | 4_4:-60170378 | None:intergenic |
| TCATATTGTTGGTCCATTGA+AGG | 0.466560 | 4_4:-60170705 | None:intergenic |
| AAAGTGATTGTTCTAGAGAA+AGG | 0.469246 | 4_4:+60170642 | Msa0691860:CDS |
| ATGGCTTATATCAACAAGGT+TGG | 0.474407 | 4_4:+60170033 | Msa0691860:CDS |
| GAAGAAATGTTTGGGAGTGT+TGG | 0.474637 | 4_4:+60171208 | Msa0691860:CDS |
| ATAATTGAGACACCATTACT+TGG | 0.476662 | 4_4:+60171933 | Msa0691860:CDS |
| TGCAGAGGGCTCTCAAGCTT+AGG | 0.477034 | 4_4:+60170152 | Msa0691860:CDS |
| TCAAATGGGGAGTTGTAGAA+TGG | 0.477133 | 4_4:+60172334 | Msa0691860:CDS |
| ATTAAACTTTATACGTGAGA+TGG | 0.480457 | 4_4:+60172770 | Msa0691860:three_prime_UTR |
| GCTTCTGTCCTTTCAAATGC+AGG | 0.481266 | 4_4:+60170615 | Msa0691860:CDS |
| GTTGGTTCTGGCTGTGGAGG+AGG | 0.482681 | 4_4:+60170585 | Msa0691860:CDS |
| AAATGTGATGCAGTAGTTGT+TGG | 0.485936 | 4_4:+60170567 | Msa0691860:CDS |
| GGTGACAATGCTCCTTCCAT+TGG | 0.486201 | 4_4:-60172278 | None:intergenic |
| AGAAGCAGTAATATTGATAA+GGG | 0.492373 | 4_4:+60170003 | Msa0691860:CDS |
| AAAATCAAGTACTAAGAAAA+GGG | 0.492431 | 4_4:+60170964 | Msa0691860:CDS |
| CTTTGTGGCCTGCATTTGAA+AGG | 0.494540 | 4_4:-60170623 | None:intergenic |
| GTATATACCTCGTCAGGGAT+TGG | 0.495527 | 4_4:-60168802 | None:intergenic |
| TGATGAAAATGGTGAGAGTT+GGG | 0.496388 | 4_4:+60172382 | Msa0691860:CDS |
| CTTAGAGTATCTATCTGCTA+TGG | 0.499902 | 4_4:+60170887 | Msa0691860:CDS |
| CATATGCATCAATATATCCA+TGG | 0.500085 | 4_4:+60171964 | Msa0691860:CDS |
| GAAGATTATTCATCACTAGA+AGG | 0.507111 | 4_4:+60170681 | Msa0691860:CDS |
| TGTGTTGCCTTCATTGCCAA+TGG | 0.507516 | 4_4:+60168690 | Msa0691860:CDS |
| GCTGGTTCAACAGTAGGTGG+TGG | 0.508719 | 4_4:+60170774 | Msa0691860:CDS |
| TTAATGATGAGGATACTTTG+TGG | 0.510276 | 4_4:-60171881 | None:intergenic |
| GCAGCAGGAGCTGTTGAAGT+AGG | 0.511117 | 4_4:+60172170 | Msa0691860:CDS |
| TATCCCCATGTCATTAGTAC+AGG | 0.513550 | 4_4:-60171377 | None:intergenic |
| ATCACTAGAAGGTCCTTCAA+TGG | 0.515670 | 4_4:+60170692 | Msa0691860:CDS |
| AGTGTGCTTCCAACTGCTGT+TGG | 0.516894 | 4_4:+60172434 | Msa0691860:CDS |
| TAATGAGAACACTAGCGAAA+AGG | 0.517011 | 4_4:+60172226 | Msa0691860:CDS |
| CACAATGAAGCTACAAATTG+AGG | 0.519287 | 4_4:+60171253 | Msa0691860:CDS |
| GGATTAACACCAACAGCAGT+TGG | 0.519690 | 4_4:-60172443 | None:intergenic |
| TAATTATACACCATATATGT+TGG | 0.520953 | 4_4:+60168453 | None:intergenic |
| TTTCTAAGAGCATCATCCAT+TGG | 0.520961 | 4_4:-60168706 | None:intergenic |
| GAAACTGTGTGTGAGAGAAT+TGG | 0.522367 | 4_4:+60170909 | Msa0691860:CDS |
| TTGAGTCAAGTGTGACATTG+AGG | 0.526976 | 4_4:-60170524 | None:intergenic |
| ATGGAAAGCCATCGGATATG+AGG | 0.528852 | 4_4:+60170383 | Msa0691860:CDS |
| AAAGTGACAATTTCTGCAGG+TGG | 0.529305 | 4_4:+60171278 | Msa0691860:CDS |
| AGAAGAAAACAAAGAGGCAT+AGG | 0.530309 | 4_4:-60170216 | None:intergenic |
| GGCTTATATCAACAAGGTTG+GGG | 0.532309 | 4_4:+60170035 | Msa0691860:CDS |
| AACGAAAATTGTACACAAGA+AGG | 0.534959 | 4_4:+60170936 | Msa0691860:CDS |
| AAGACAAGCTTGAGAAGTTG+TGG | 0.536089 | 4_4:-60170108 | None:intergenic |
| TATCACAGGTAAAATCTATG+AGG | 0.536553 | 4_4:+60171839 | Msa0691860:intron |
| CTGAGAATTCTAATAGCAGC+AGG | 0.537001 | 4_4:+60172155 | Msa0691860:CDS |
| ATACTCTAAGCTTTCAAAGA+GGG | 0.538565 | 4_4:-60170874 | None:intergenic |
| TATAGATAGTGTTTATCCAA+TGG | 0.540962 | 4_4:+60172262 | Msa0691860:CDS |
| GCCAAAGTGACAATTTCTGC+AGG | 0.549592 | 4_4:+60171275 | Msa0691860:CDS |
| TTGATGAAAATGGTGAGAGT+TGG | 0.551525 | 4_4:+60172381 | Msa0691860:CDS |
| AAGAGAAAAGATTGTGCAGA+GGG | 0.551533 | 4_4:+60170138 | Msa0691860:CDS |
| CAAATGGGGAGTTGTAGAAT+GGG | 0.552016 | 4_4:+60172335 | Msa0691860:CDS |
| TGAATGATCATTTAATGATG+AGG | 0.555682 | 4_4:-60171892 | None:intergenic |
| GAACCACAATAATGATTCCC+TGG | 0.558303 | 4_4:-60171032 | None:intergenic |
| TTTGCTGGTTCAACAGTAGG+TGG | 0.559029 | 4_4:+60170771 | Msa0691860:CDS |
| TATATTGATGCATATGATGA+TGG | 0.559413 | 4_4:-60171957 | None:intergenic |
| AATCATTATTGTGGTTCATG+TGG | 0.563673 | 4_4:+60171038 | Msa0691860:CDS |
| TCCATCCTGTACTAATGACA+TGG | 0.567525 | 4_4:+60171372 | Msa0691860:CDS |
| GGTGAGAGTTGGGAAGCTGA+AGG | 0.571561 | 4_4:+60172392 | Msa0691860:CDS |
| AAGTGACAATTTCTGCAGGT+GGG | 0.574604 | 4_4:+60171279 | Msa0691860:CDS |
| AAGTCAAGTCCTGATTCCCA+TGG | 0.575765 | 4_4:-60171981 | None:intergenic |
| AGTGACAATTTCTGCAGGTG+GGG | 0.576018 | 4_4:+60171280 | Msa0691860:CDS |
| ATAATAAGAGACAAAGCAAG+TGG | 0.576779 | 4_4:+60172050 | Msa0691860:CDS |
| TACTCTAAGCTTTCAAAGAG+GGG | 0.577026 | 4_4:-60170873 | None:intergenic |
| GATAGAGAGAATATGAGAGC+TGG | 0.578200 | 4_4:+60172119 | Msa0691860:CDS |
| CCCATGTCATTAGTACAGGA+TGG | 0.579090 | 4_4:-60171373 | None:intergenic |
| GTTGTTGGTTCTGGCTGTGG+AGG | 0.580402 | 4_4:+60170582 | Msa0691860:CDS |
| TAGAATGGGAGTGAATGAAA+AGG | 0.583569 | 4_4:+60172349 | Msa0691860:CDS |
| TCACCAGGGAATCATTATTG+TGG | 0.584122 | 4_4:+60171029 | Msa0691860:CDS |
| ATATGCATCAATATATCCAT+GGG | 0.588719 | 4_4:+60171965 | Msa0691860:CDS |
| AACAAGGGACTCAAGTTACA+TGG | 0.588903 | 4_4:+60171084 | Msa0691860:CDS |
| GATAGTGTTTATCCAATGGA+AGG | 0.590334 | 4_4:+60172266 | Msa0691860:CDS |
| TCTCTCACACCACTCAACAA+TGG | 0.593983 | 4_4:-60168601 | None:intergenic |
| AGTTGTGTCATGTTCATGCA+TGG | 0.599087 | 4_4:-60170475 | None:intergenic |
| TACAAATTCCAATTCTCACC+TGG | 0.600068 | 4_4:-60172299 | None:intergenic |
| ATGGAAGGAGCATTGTCACC+AGG | 0.601599 | 4_4:+60172281 | Msa0691860:CDS |
| CAACAATCTCTATCTAACAA+AGG | 0.604364 | 4_4:+60170501 | Msa0691860:CDS |
| GATACTCTAAGCTTTCAAAG+AGG | 0.612780 | 4_4:-60170875 | None:intergenic |
| GTAGGAACACACAGAAGTGA+TGG | 0.615648 | 4_4:+60172188 | Msa0691860:CDS |
| ATCACAGGTAAAATCTATGA+GGG | 0.616658 | 4_4:+60171840 | Msa0691860:intron |
| TTCTATGGCTTATATCAACA+AGG | 0.617366 | 4_4:+60170029 | Msa0691860:CDS |
| CCATCCTGTACTAATGACAT+GGG | 0.618479 | 4_4:+60171373 | Msa0691860:CDS |
| TGTCCAAAAGGAGAGAAACA+AGG | 0.624436 | 4_4:+60171068 | Msa0691860:CDS |
| TGTTGATACCTCATATCCGA+TGG | 0.624751 | 4_4:-60170391 | None:intergenic |
| AAAATGGTGATAATCCGGCA+TGG | 0.627391 | 4_4:+60170364 | Msa0691860:CDS |
| GCTGAGATGTTAGTGAAGAG+TGG | 0.628102 | 4_4:+60169974 | Msa0691860:CDS |
| AATCCGGCATGGAAAGCCAT+CGG | 0.629555 | 4_4:+60170375 | Msa0691860:CDS |
| CCACCATTAATGATCTCTAG+TGG | 0.630098 | 4_4:+60171314 | Msa0691860:CDS |
| GTGAGAGTTGGGAAGCTGAA+GGG | 0.632909 | 4_4:+60172393 | Msa0691860:CDS |
| GAATCAAAATCAGATCTCAA+AGG | 0.635229 | 4_4:+60171407 | Msa0691860:CDS |
| TATGATGATGGTCCAAGTAA+TGG | 0.637944 | 4_4:-60171945 | None:intergenic |
| ATGGGAGTGAATGAAAAGGA+AGG | 0.638461 | 4_4:+60172353 | Msa0691860:CDS |
| CCCAAGAGAAGAAAACAAAG+AGG | 0.641068 | 4_4:-60170222 | None:intergenic |
| ATGAGAGCTGGTTTACAACA+AGG | 0.645336 | 4_4:+60172131 | Msa0691860:CDS |
| GACCAACAATATGAAAATGG+AGG | 0.646970 | 4_4:+60170714 | Msa0691860:CDS |
| CACACGTATATACCTCGTCA+GGG | 0.648983 | 4_4:-60168807 | None:intergenic |
| GTCACTAACAAGCATATGTG+AGG | 0.652709 | 4_4:+60168666 | Msa0691860:CDS |
| GAGAATAGCAAATACAAACA+TGG | 0.657233 | 4_4:+60168622 | Msa0691860:CDS |
| GTCCAAAAGGAGAGAAACAA+GGG | 0.659274 | 4_4:+60171069 | Msa0691860:CDS |
| TATGTGCCAAGAAATTCACC+AGG | 0.661064 | 4_4:+60171014 | Msa0691860:CDS |
| ATACTTCTGCTCATCAAATG+GGG | 0.665706 | 4_4:+60172321 | Msa0691860:CDS |
| AAAGAGAAAAGATTGTGCAG+AGG | 0.669869 | 4_4:+60170137 | Msa0691860:CDS |
| TATGTATCCAATCCCTGACG+AGG | 0.674932 | 4_4:+60168795 | Msa0691860:CDS |
| ACAGGTAAAATCTATGAGGG+AGG | 0.676529 | 4_4:+60171843 | Msa0691860:intron |
| CCACTAGAGATCATTAATGG+TGG | 0.685061 | 4_4:-60171314 | None:intergenic |
| TGATTATGATGAATCAAGCA+AGG | 0.685314 | 4_4:+60168741 | Msa0691860:CDS |
| ATGCGAGTCTAAAAGGAGTG+AGG | 0.691376 | 4_4:-60170177 | None:intergenic |
| CATCCTGTACTAATGACATG+GGG | 0.691532 | 4_4:+60171374 | Msa0691860:CDS |
| GAGTGTCATCCATTGTTGAG+TGG | 0.715422 | 4_4:+60168592 | Msa0691860:CDS |
| ATGTGCCAAGAAATTCACCA+GGG | 0.759136 | 4_4:+60171015 | Msa0691860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGAAAAGAATTAATATA+TGG | - | chr4_4:60168500-60168519 | None:intergenic | 10.0% |
| !! | AAAAATTAAAATAACAACAT+CGG | + | chr4_4:60169337-60169356 | Msa0691860:intron | 10.0% |
| !!! | CTTCTTATAAATTTATTTTA+GGG | - | chr4_4:60169572-60169591 | None:intergenic | 10.0% |
| !!! | ACTTCTTATAAATTTATTTT+AGG | - | chr4_4:60169573-60169592 | None:intergenic | 10.0% |
| !!! | TATTAACTAGTTCTTTTATA+AGG | + | chr4_4:60168525-60168544 | Msa0691860:five_prime_UTR | 15.0% |
| !!! | ATGAAAAATTTTAGAGTAAA+GGG | - | chr4_4:60169525-60169544 | None:intergenic | 15.0% |
| !!! | TATGAAAAATTTTAGAGTAA+AGG | - | chr4_4:60169526-60169545 | None:intergenic | 15.0% |
| !! | ATAATGTAAAGATCTAATAT+GGG | + | chr4_4:60169637-60169656 | Msa0691860:intron | 15.0% |
| !! | ACTCTTTATAAAATTATGTA+AGG | - | chr4_4:60169784-60169803 | None:intergenic | 15.0% |
| !!! | TCTTGTTTGAAAATAATTAT+AGG | + | chr4_4:60171165-60171184 | Msa0691860:CDS | 15.0% |
| !!! | GTTTTTTTTAACCATATTAT+TGG | + | chr4_4:60171465-60171484 | Msa0691860:intron | 15.0% |
| !!! | AGAATTTTTCAAGAAATAGT+TGG | + | chr4_4:60169068-60169087 | Msa0691860:intron | 20.0% |
| !!! | AATAGTTGGCAAATTTTAAT+TGG | + | chr4_4:60169082-60169101 | Msa0691860:intron | 20.0% |
| !! | TAACGTTAAATCATATTAGT+CGG | - | chr4_4:60169238-60169257 | None:intergenic | 20.0% |
| !! | CAATTAAAATTGAACAGTTA+TGG | + | chr4_4:60169279-60169298 | Msa0691860:intron | 20.0% |
| !! | AAATTGAACTTTAAACTTTC+AGG | - | chr4_4:60169409-60169428 | None:intergenic | 20.0% |
| !! | CATAATGTAAAGATCTAATA+TGG | + | chr4_4:60169636-60169655 | Msa0691860:intron | 20.0% |
| !! | ATATAAGTTTGTAAGATAAG+AGG | - | chr4_4:60169811-60169830 | None:intergenic | 20.0% |
| !! | CAAATAAGATATATTAGATG+AGG | - | chr4_4:60169879-60169898 | None:intergenic | 20.0% |
| !!! | ATTTTGTAGGTTGATAAAAA+TGG | + | chr4_4:60170348-60170367 | Msa0691860:intron | 20.0% |
| !! | AAAATCAAGTACTAAGAAAA+GGG | + | chr4_4:60170964-60170983 | Msa0691860:CDS | 20.0% |
| !! | GGTTTAAAGAATAAAAACAT+TGG | + | chr4_4:60171335-60171354 | Msa0691860:CDS | 20.0% |
| !! | TAAAGAATAAAAACATTGGT+AGG | + | chr4_4:60171339-60171358 | Msa0691860:CDS | 20.0% |
| !!! | AATGATCTTTTATTTTGTCA+CGG | - | chr4_4:60172687-60172706 | None:intergenic | 20.0% |
| !! | ATTTTTGTGACCAACATATA+TGG | - | chr4_4:60168466-60168485 | None:intergenic | 25.0% |
| !!! | TAACTAGTTCTTTTATAAGG+TGG | + | chr4_4:60168528-60168547 | Msa0691860:five_prime_UTR | 25.0% |
| !! | TTGCATTTAGGAATTTCTTT+TGG | - | chr4_4:60168891-60168910 | None:intergenic | 25.0% |
| ! | TGGTGTGTAATATAAAAAGT+TGG | - | chr4_4:60169688-60169707 | None:intergenic | 25.0% |
| ! | AGAAGCAGTAATATTGATAA+GGG | + | chr4_4:60170003-60170022 | Msa0691860:CDS | 25.0% |
| !! | TTAAGAAAGTGACATTTTGT+AGG | + | chr4_4:60170335-60170354 | Msa0691860:intron | 25.0% |
| ! | TGATAAAAATGGTGATAATC+CGG | + | chr4_4:60170359-60170378 | Msa0691860:CDS | 25.0% |
| !! | TTCTATAATTCCCTTTTCAA+GGG | - | chr4_4:60170454-60170473 | None:intergenic | 25.0% |
| !! | TTTCTATAATTCCCTTTTCA+AGG | - | chr4_4:60170455-60170474 | None:intergenic | 25.0% |
| ! | TTCTAGTGATGAATAATCTT+CGG | - | chr4_4:60170682-60170701 | None:intergenic | 25.0% |
| !!! | TCAAGAATAGTTATTTTTGC+TGG | + | chr4_4:60170756-60170775 | Msa0691860:CDS | 25.0% |
| !! | CTTTTCTTAGTACTTGATTT+TGG | - | chr4_4:60170965-60170984 | None:intergenic | 25.0% |
| ! | CAAAATCAAGTACTAAGAAA+AGG | + | chr4_4:60170963-60170982 | Msa0691860:CDS | 25.0% |
| ! | AGAAAGAAGAAGAAATGTTT+GGG | + | chr4_4:60171200-60171219 | Msa0691860:CDS | 25.0% |
| ! | ATCTTAACTAGTTACATGTT+TGG | + | chr4_4:60171681-60171700 | Msa0691860:intron | 25.0% |
| ! | CATAGGAAAAATAATAAGCT+TGG | - | chr4_4:60171795-60171814 | None:intergenic | 25.0% |
| !! | TCATCTATTTGATTTATCAC+AGG | + | chr4_4:60171825-60171844 | Msa0691860:intron | 25.0% |
| ! | TGAATGATCATTTAATGATG+AGG | - | chr4_4:60171895-60171914 | None:intergenic | 25.0% |
| ! | TATATTGATGCATATGATGA+TGG | - | chr4_4:60171960-60171979 | None:intergenic | 25.0% |
| ! | ATATGCATCAATATATCCAT+GGG | + | chr4_4:60171965-60171984 | Msa0691860:CDS | 25.0% |
| ! | TATAGATAGTGTTTATCCAA+TGG | + | chr4_4:60172262-60172281 | Msa0691860:CDS | 25.0% |
| !! | CTGCATTTTGTATTTCAAAT+AGG | + | chr4_4:60172486-60172505 | Msa0691860:CDS | 25.0% |
| !! | AATAGGATTGTAGATTTTCT+TGG | + | chr4_4:60172503-60172522 | Msa0691860:CDS | 25.0% |
| !! | ATTGTAGATTTTCTTGGAAA+GGG | + | chr4_4:60172509-60172528 | Msa0691860:CDS | 25.0% |
| ! | ATTAAACTTTATACGTGAGA+TGG | + | chr4_4:60172770-60172789 | Msa0691860:three_prime_UTR | 25.0% |
| GAGAATAGCAAATACAAACA+TGG | + | chr4_4:60168622-60168641 | Msa0691860:CDS | 30.0% | |
| ! | ATACAAACATGGATTTTCTG+TGG | + | chr4_4:60168633-60168652 | Msa0691860:CDS | 30.0% |
| TGATTATGATGAATCAAGCA+AGG | + | chr4_4:60168741-60168760 | Msa0691860:CDS | 30.0% | |
| TCGGAAAAACTCAAAATGTT+TGG | + | chr4_4:60169356-60169375 | Msa0691860:intron | 30.0% | |
| ACTCAAAATGTTTGGTATAG+TGG | + | chr4_4:60169364-60169383 | Msa0691860:intron | 30.0% | |
| ! | CAATTTCTGCTTGTGTTTTT+AGG | + | chr4_4:60169423-60169442 | Msa0691860:intron | 30.0% |
| !! | AAAATTGACTTGCAAGGTAA+GGG | - | chr4_4:60169600-60169619 | None:intergenic | 30.0% |
| !! | TAAAATTGACTTGCAAGGTA+AGG | - | chr4_4:60169601-60169620 | None:intergenic | 30.0% |
| !! | CCATATAAAATTGACTTGCA+AGG | - | chr4_4:60169606-60169625 | None:intergenic | 30.0% |
| ! | CCTTGCAAGTCAATTTTATA+TGG | + | chr4_4:60169603-60169622 | Msa0691860:intron | 30.0% |
| ! | CCAAAATTGTTAATTTGGCT+TGG | - | chr4_4:60169708-60169727 | None:intergenic | 30.0% |
| ! | CCAAGCCAAATTAACAATTT+TGG | + | chr4_4:60169705-60169724 | Msa0691860:intron | 30.0% |
| CCTGTCCAAAATTGTTAATT+TGG | - | chr4_4:60169713-60169732 | None:intergenic | 30.0% | |
| ! | CCAAATTAACAATTTTGGAC+AGG | + | chr4_4:60169710-60169729 | Msa0691860:intron | 30.0% |
| ! | AATTAACAATTTTGGACAGG+AGG | + | chr4_4:60169713-60169732 | Msa0691860:intron | 30.0% |
| ! | ATTAACAATTTTGGACAGGA+GGG | + | chr4_4:60169714-60169733 | Msa0691860:intron | 30.0% |
| !! | CACTATTTCTATGTTGAACT+TGG | - | chr4_4:60169751-60169770 | None:intergenic | 30.0% |
| GTTCAACATAGAAATAGTGT+TGG | + | chr4_4:60169752-60169771 | Msa0691860:intron | 30.0% | |
| ATTTGAACACATGCAAACTA+TGG | + | chr4_4:60169849-60169868 | Msa0691860:intron | 30.0% | |
| TTTGAACACATGCAAACTAT+GGG | + | chr4_4:60169850-60169869 | Msa0691860:intron | 30.0% | |
| CAGAAGCAGTAATATTGATA+AGG | + | chr4_4:60170002-60170021 | Msa0691860:CDS | 30.0% | |
| TATTGATAAGGGTGATTCTA+TGG | + | chr4_4:60170014-60170033 | Msa0691860:CDS | 30.0% | |
| TTCTATGGCTTATATCAACA+AGG | + | chr4_4:60170029-60170048 | Msa0691860:CDS | 30.0% | |
| ATTATTGTGAGTGTACGAAA+TGG | - | chr4_4:60170281-60170300 | None:intergenic | 30.0% | |
| !! | TCTATAATTCCCTTTTCAAG+GGG | - | chr4_4:60170453-60170472 | None:intergenic | 30.0% |
| CAACAATCTCTATCTAACAA+AGG | + | chr4_4:60170501-60170520 | Msa0691860:CDS | 30.0% | |
| !! | AAAGTGATTGTTCTAGAGAA+AGG | + | chr4_4:60170642-60170661 | Msa0691860:CDS | 30.0% |
| TCTAGTGATGAATAATCTTC+GGG | - | chr4_4:60170681-60170700 | None:intergenic | 30.0% | |
| GAAGATTATTCATCACTAGA+AGG | + | chr4_4:60170681-60170700 | Msa0691860:CDS | 30.0% | |
| ATGGACCAACAATATGAAAA+TGG | + | chr4_4:60170711-60170730 | Msa0691860:CDS | 30.0% | |
| ! | TACCTCCATTTTCATATTGT+TGG | - | chr4_4:60170719-60170738 | None:intergenic | 30.0% |
| ! | CATTCTTTCAACACATTTTG+TGG | - | chr4_4:60170834-60170853 | None:intergenic | 30.0% |
| CACAAAATGTGTTGAAAGAA+TGG | + | chr4_4:60170832-60170851 | Msa0691860:CDS | 30.0% | |
| ATACTCTAAGCTTTCAAAGA+GGG | - | chr4_4:60170877-60170896 | None:intergenic | 30.0% | |
| AACGAAAATTGTACACAAGA+AGG | + | chr4_4:60170936-60170955 | Msa0691860:CDS | 30.0% | |
| ! | CAACTTTTAAGCCAAGATTT+TGG | - | chr4_4:60170992-60171011 | None:intergenic | 30.0% |
| AATCATTATTGTGGTTCATG+TGG | + | chr4_4:60171038-60171057 | Msa0691860:CDS | 30.0% | |
| ! | TTTCTTCTTCTTTCTGGTAT+TGG | - | chr4_4:60171195-60171214 | None:intergenic | 30.0% |
| CAAACATTTCTTCTTCTTTC+TGG | - | chr4_4:60171201-60171220 | None:intergenic | 30.0% | |
| CAGAAAGAAGAAGAAATGTT+TGG | + | chr4_4:60171199-60171218 | Msa0691860:CDS | 30.0% | |
| AAACCACTAGAGATCATTAA+TGG | - | chr4_4:60171320-60171339 | None:intergenic | 30.0% | |
| !!! | TGAGATCTGATTTTGATTCT+GGG | - | chr4_4:60171406-60171425 | None:intergenic | 30.0% |
| !!! | TTGAGATCTGATTTTGATTC+TGG | - | chr4_4:60171407-60171426 | None:intergenic | 30.0% |
| GAATCAAAATCAGATCTCAA+AGG | + | chr4_4:60171407-60171426 | Msa0691860:CDS | 30.0% | |
| ATAACTTGGCACCAATAATA+TGG | - | chr4_4:60171479-60171498 | None:intergenic | 30.0% | |
| !!! | CCAAGTTATCACTGATTTTT+CGG | + | chr4_4:60171490-60171509 | Msa0691860:intron | 30.0% |
| CAACTTTATATTTGTACGAG+TGG | - | chr4_4:60171629-60171648 | None:intergenic | 30.0% | |
| CACTCGTACAAATATAAAGT+TGG | + | chr4_4:60171627-60171646 | Msa0691860:intron | 30.0% | |
| TTTGTGTTTGTTTGATATCG+CGG | - | chr4_4:60171761-60171780 | None:intergenic | 30.0% | |
| TAGATGAAAATACAGCTCAT+AGG | - | chr4_4:60171812-60171831 | None:intergenic | 30.0% | |
| TATCACAGGTAAAATCTATG+AGG | + | chr4_4:60171839-60171858 | Msa0691860:intron | 30.0% | |
| ATCACAGGTAAAATCTATGA+GGG | + | chr4_4:60171840-60171859 | Msa0691860:intron | 30.0% | |
| TTAATGATGAGGATACTTTG+TGG | - | chr4_4:60171884-60171903 | None:intergenic | 30.0% | |
| ATAATTGAGACACCATTACT+TGG | + | chr4_4:60171933-60171952 | Msa0691860:CDS | 30.0% | |
| CATATGCATCAATATATCCA+TGG | + | chr4_4:60171964-60171983 | Msa0691860:CDS | 30.0% | |
| ATAATAAGAGACAAAGCAAG+TGG | + | chr4_4:60172050-60172069 | Msa0691860:CDS | 30.0% | |
| TATACTTCTGCTCATCAAAT+GGG | + | chr4_4:60172320-60172339 | Msa0691860:CDS | 30.0% | |
| ! | GATTGTAGATTTTCTTGGAA+AGG | + | chr4_4:60172508-60172527 | Msa0691860:CDS | 30.0% |
| CAATAAGTCAGATGAAATCA+CGG | + | chr4_4:60172579-60172598 | Msa0691860:intron | 30.0% | |
| ! | AGCTTTTGCAAAACTTAACA+TGG | - | chr4_4:60172609-60172628 | None:intergenic | 30.0% |
| !! | TTTCTAAGAGCATCATCCAT+TGG | - | chr4_4:60168709-60168728 | None:intergenic | 35.0% |
| CAGAAATGTTGAAGAAAGAC+TGG | - | chr4_4:60168771-60168790 | None:intergenic | 35.0% | |
| ! | CATTTTCCTATTAGTCGAGT+TGG | - | chr4_4:60169023-60169042 | None:intergenic | 35.0% |
| AACTTTAAACTTTCAGGCTC+TGG | - | chr4_4:60169403-60169422 | None:intergenic | 35.0% | |
| !!! | TGCTTGTGTTTTTAGGAAAG+AGG | + | chr4_4:60169430-60169449 | Msa0691860:intron | 35.0% |
| TATCTTGTCTGTCTTAGACT+AGG | + | chr4_4:60169492-60169511 | Msa0691860:intron | 35.0% | |
| ATCTTGTCTGTCTTAGACTA+GGG | + | chr4_4:60169493-60169512 | Msa0691860:intron | 35.0% | |
| ! | TTAACAATTTTGGACAGGAG+GGG | + | chr4_4:60169715-60169734 | Msa0691860:intron | 35.0% |
| TCTAAATGTTCAATGCCAAC+AGG | + | chr4_4:60169949-60169968 | Msa0691860:intron | 35.0% | |
| ATGGCTTATATCAACAAGGT+TGG | + | chr4_4:60170033-60170052 | Msa0691860:CDS | 35.0% | |
| TGGCTTATATCAACAAGGTT+GGG | + | chr4_4:60170034-60170053 | Msa0691860:CDS | 35.0% | |
| TGCTCTGTCTTAGTAAGAAA+TGG | + | chr4_4:60170077-60170096 | Msa0691860:CDS | 35.0% | |
| CTTGAGAAGTTGTGGATAAA+TGG | - | chr4_4:60170103-60170122 | None:intergenic | 35.0% | |
| AAAGAGAAAAGATTGTGCAG+AGG | + | chr4_4:60170137-60170156 | Msa0691860:CDS | 35.0% | |
| AAGAGAAAAGATTGTGCAGA+GGG | + | chr4_4:60170138-60170157 | Msa0691860:CDS | 35.0% | |
| ! | AGAAGAAAACAAAGAGGCAT+AGG | - | chr4_4:60170219-60170238 | None:intergenic | 35.0% |
| !!! | CCTCTTTGTTTTCTTCTCTT+GGG | + | chr4_4:60170222-60170241 | Msa0691860:CDS | 35.0% |
| AAAAAGAGACCCCTTGAAAA+GGG | + | chr4_4:60170441-60170460 | Msa0691860:CDS | 35.0% | |
| !! | CTGCATCACATTTGATTTTG+AGG | - | chr4_4:60170560-60170579 | None:intergenic | 35.0% |
| AAATGTGATGCAGTAGTTGT+TGG | + | chr4_4:60170567-60170586 | Msa0691860:CDS | 35.0% | |
| !! | TCTCTAGAACAATCACTTTG+TGG | - | chr4_4:60170641-60170660 | None:intergenic | 35.0% |
| TCATATTGTTGGTCCATTGA+AGG | - | chr4_4:60170708-60170727 | None:intergenic | 35.0% | |
| GACCAACAATATGAAAATGG+AGG | + | chr4_4:60170714-60170733 | Msa0691860:CDS | 35.0% | |
| !!! | ATTTTTGCTGGTTCAACAGT+AGG | + | chr4_4:60170768-60170787 | Msa0691860:CDS | 35.0% |
| TACTCTAAGCTTTCAAAGAG+GGG | - | chr4_4:60170876-60170895 | None:intergenic | 35.0% | |
| GATACTCTAAGCTTTCAAAG+AGG | - | chr4_4:60170878-60170897 | None:intergenic | 35.0% | |
| ! | CTTAGAGTATCTATCTGCTA+TGG | + | chr4_4:60170887-60170906 | Msa0691860:CDS | 35.0% |
| TATTGTGGTTCATGTGGTTA+TGG | + | chr4_4:60171044-60171063 | Msa0691860:CDS | 35.0% | |
| CTTGTAGATGCTGTTGAAAA+AGG | + | chr4_4:60171107-60171126 | Msa0691860:CDS | 35.0% | |
| ! | GACTCTACTGTTTAAAGTCT+TGG | - | chr4_4:60171234-60171253 | None:intergenic | 35.0% |
| CACAATGAAGCTACAAATTG+AGG | + | chr4_4:60171253-60171272 | Msa0691860:CDS | 35.0% | |
| CCGAAAAATCAGTGATAACT+TGG | - | chr4_4:60171493-60171512 | None:intergenic | 35.0% | |
| CTAGTTACATGTTTGGTACA+CGG | + | chr4_4:60171688-60171707 | Msa0691860:intron | 35.0% | |
| !! | TATGATGATGGTCCAAGTAA+TGG | - | chr4_4:60171948-60171967 | None:intergenic | 35.0% |
| TCAATATATCCATGGGAATC+AGG | + | chr4_4:60171972-60171991 | Msa0691860:CDS | 35.0% | |
| ! | GTGATTAAATGTGCTGTTCT+TGG | - | chr4_4:60172029-60172048 | None:intergenic | 35.0% |
| AAGTGGACAAGTAAAAACTG+AGG | + | chr4_4:60172067-60172086 | Msa0691860:CDS | 35.0% | |
| AGTGGACAAGTAAAAACTGA+GGG | + | chr4_4:60172068-60172087 | Msa0691860:CDS | 35.0% | |
| TAATGAGAACACTAGCGAAA+AGG | + | chr4_4:60172226-60172245 | Msa0691860:CDS | 35.0% | |
| GATAGTGTTTATCCAATGGA+AGG | + | chr4_4:60172266-60172285 | Msa0691860:CDS | 35.0% | |
| TACAAATTCCAATTCTCACC+TGG | - | chr4_4:60172302-60172321 | None:intergenic | 35.0% | |
| GTATACTTCTGCTCATCAAA+TGG | + | chr4_4:60172319-60172338 | Msa0691860:CDS | 35.0% | |
| ATACTTCTGCTCATCAAATG+GGG | + | chr4_4:60172321-60172340 | Msa0691860:CDS | 35.0% | |
| TAGAATGGGAGTGAATGAAA+AGG | + | chr4_4:60172349-60172368 | Msa0691860:CDS | 35.0% | |
| TTGATGAAAATGGTGAGAGT+TGG | + | chr4_4:60172381-60172400 | Msa0691860:CDS | 35.0% | |
| TGATGAAAATGGTGAGAGTT+GGG | + | chr4_4:60172382-60172401 | Msa0691860:CDS | 35.0% | |
| GTTGACTGAATAGTGATCAT+AGG | - | chr4_4:60172467-60172486 | None:intergenic | 35.0% | |
| GTCACTAACAAGCATATGTG+AGG | + | chr4_4:60168666-60168685 | Msa0691860:CDS | 40.0% | |
| CGTAGCAGTTTCTTGCATTT+AGG | - | chr4_4:60168903-60168922 | None:intergenic | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | - | chr4_4:60169121-60169140 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr4_4:60169144-60169163 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr4_4:60169147-60169166 | None:intergenic | 40.0% | |
| GATTAGAGTCGATCCGTTTA+GGG | + | chr4_4:60169659-60169678 | Msa0691860:intron | 40.0% | |
| AAAAAGTTGGCGACCCTAAA+CGG | - | chr4_4:60169675-60169694 | None:intergenic | 40.0% | |
| GGCTTATATCAACAAGGTTG+GGG | + | chr4_4:60170035-60170054 | Msa0691860:CDS | 40.0% | |
| !! | TTGGGGACTTTGTTGATTTG+TGG | + | chr4_4:60170052-60170071 | Msa0691860:CDS | 40.0% |
| AAGACAAGCTTGAGAAGTTG+TGG | - | chr4_4:60170111-60170130 | None:intergenic | 40.0% | |
| CAACTTCTCAAGCTTGTCTT+TGG | + | chr4_4:60170111-60170130 | Msa0691860:CDS | 40.0% | |
| TAAGCGAATGCGAGTCTAAA+AGG | - | chr4_4:60170187-60170206 | None:intergenic | 40.0% | |
| !!! | GCCTCTTTGTTTTCTTCTCT+TGG | + | chr4_4:60170221-60170240 | Msa0691860:CDS | 40.0% |
| CCCAAGAGAAGAAAACAAAG+AGG | - | chr4_4:60170225-60170244 | None:intergenic | 40.0% | |
| AAAATGGTGATAATCCGGCA+TGG | + | chr4_4:60170364-60170383 | Msa0691860:CDS | 40.0% | |
| TGTTGATACCTCATATCCGA+TGG | - | chr4_4:60170394-60170413 | None:intergenic | 40.0% | |
| !! | CTTTTCAAGGGGTCTCTTTT+TGG | - | chr4_4:60170442-60170461 | None:intergenic | 40.0% |
| CAAAAAGAGACCCCTTGAAA+AGG | + | chr4_4:60170440-60170459 | Msa0691860:CDS | 40.0% | |
| AGTTGTGTCATGTTCATGCA+TGG | - | chr4_4:60170478-60170497 | None:intergenic | 40.0% | |
| TTGAGTCAAGTGTGACATTG+AGG | - | chr4_4:60170527-60170546 | None:intergenic | 40.0% | |
| ATCACTAGAAGGTCCTTCAA+TGG | + | chr4_4:60170692-60170711 | Msa0691860:CDS | 40.0% | |
| GAAACTGTGTGTGAGAGAAT+TGG | + | chr4_4:60170909-60170928 | Msa0691860:CDS | 40.0% | |
| !! | AGAAAAGGGTGCCAAAATCT+TGG | + | chr4_4:60170978-60170997 | Msa0691860:CDS | 40.0% |
| TATGTGCCAAGAAATTCACC+AGG | + | chr4_4:60171014-60171033 | Msa0691860:CDS | 40.0% | |
| ATGTGCCAAGAAATTCACCA+GGG | + | chr4_4:60171015-60171034 | Msa0691860:CDS | 40.0% | |
| TGATTCCCTGGTGAATTTCT+TGG | - | chr4_4:60171023-60171042 | None:intergenic | 40.0% | |
| TCACCAGGGAATCATTATTG+TGG | + | chr4_4:60171029-60171048 | Msa0691860:CDS | 40.0% | |
| GAACCACAATAATGATTCCC+TGG | - | chr4_4:60171035-60171054 | None:intergenic | 40.0% | |
| TGTGGTTATGGTTGTCCAAA+AGG | + | chr4_4:60171056-60171075 | Msa0691860:CDS | 40.0% | |
| TGTCCAAAAGGAGAGAAACA+AGG | + | chr4_4:60171068-60171087 | Msa0691860:CDS | 40.0% | |
| GTCCAAAAGGAGAGAAACAA+GGG | + | chr4_4:60171069-60171088 | Msa0691860:CDS | 40.0% | |
| AACAAGGGACTCAAGTTACA+TGG | + | chr4_4:60171084-60171103 | Msa0691860:CDS | 40.0% | |
| !! | AAAGGTGCTGTGATCATAAC+AGG | + | chr4_4:60171125-60171144 | Msa0691860:CDS | 40.0% |
| ! | GAAGAAATGTTTGGGAGTGT+TGG | + | chr4_4:60171208-60171227 | Msa0691860:CDS | 40.0% |
| ! | ACCTGCAGAAATTGTCACTT+TGG | - | chr4_4:60171279-60171298 | None:intergenic | 40.0% |
| AAAGTGACAATTTCTGCAGG+TGG | + | chr4_4:60171278-60171297 | Msa0691860:CDS | 40.0% | |
| AAGTGACAATTTCTGCAGGT+GGG | + | chr4_4:60171279-60171298 | Msa0691860:CDS | 40.0% | |
| CCACTAGAGATCATTAATGG+TGG | - | chr4_4:60171317-60171336 | None:intergenic | 40.0% | |
| CCACCATTAATGATCTCTAG+TGG | + | chr4_4:60171314-60171333 | Msa0691860:CDS | 40.0% | |
| TCCATCCTGTACTAATGACA+TGG | + | chr4_4:60171372-60171391 | Msa0691860:CDS | 40.0% | |
| CCATCCTGTACTAATGACAT+GGG | + | chr4_4:60171373-60171392 | Msa0691860:CDS | 40.0% | |
| CATCCTGTACTAATGACATG+GGG | + | chr4_4:60171374-60171393 | Msa0691860:CDS | 40.0% | |
| TATCCCCATGTCATTAGTAC+AGG | - | chr4_4:60171380-60171399 | None:intergenic | 40.0% | |
| ! | ACCTGGCTAGTAACTTTTAG+TGG | + | chr4_4:60171533-60171552 | Msa0691860:intron | 40.0% |
| ! | CCTGGCTAGTAACTTTTAGT+GGG | + | chr4_4:60171534-60171553 | Msa0691860:intron | 40.0% |
| ! | CTGGCTAGTAACTTTTAGTG+GGG | + | chr4_4:60171535-60171554 | Msa0691860:intron | 40.0% |
| TGTACGAGTGGAAATGAACT+TGG | - | chr4_4:60171617-60171636 | None:intergenic | 40.0% | |
| ATGTTTGGTACACGGTGTAT+TGG | + | chr4_4:60171696-60171715 | Msa0691860:intron | 40.0% | |
| ATTGGAGTGATATTCGAGTG+AGG | + | chr4_4:60171714-60171733 | Msa0691860:intron | 40.0% | |
| TTGGAGTGATATTCGAGTGA+GGG | + | chr4_4:60171715-60171734 | Msa0691860:intron | 40.0% | |
| GTTTGATATCGCGGTGAATT+TGG | - | chr4_4:60171752-60171771 | None:intergenic | 40.0% | |
| ACAGGTAAAATCTATGAGGG+AGG | + | chr4_4:60171843-60171862 | Msa0691860:intron | 40.0% | |
| GATAGAGAGAATATGAGAGC+TGG | + | chr4_4:60172119-60172138 | Msa0691860:CDS | 40.0% | |
| ! | ATGAGAGCTGGTTTACAACA+AGG | + | chr4_4:60172131-60172150 | Msa0691860:CDS | 40.0% |
| CTGAGAATTCTAATAGCAGC+AGG | + | chr4_4:60172155-60172174 | Msa0691860:CDS | 40.0% | |
| TCAAATGGGGAGTTGTAGAA+TGG | + | chr4_4:60172334-60172353 | Msa0691860:CDS | 40.0% | |
| CAAATGGGGAGTTGTAGAAT+GGG | + | chr4_4:60172335-60172354 | Msa0691860:CDS | 40.0% | |
| ATGGGAGTGAATGAAAAGGA+AGG | + | chr4_4:60172353-60172372 | Msa0691860:CDS | 40.0% | |
| !! | GAAGGTGCTGTTGATGAAAA+TGG | + | chr4_4:60172371-60172390 | Msa0691860:CDS | 40.0% |
| GAGTGTCATCCATTGTTGAG+TGG | + | chr4_4:60168592-60168611 | Msa0691860:CDS | 45.0% | |
| TCTCTCACACCACTCAACAA+TGG | - | chr4_4:60168604-60168623 | None:intergenic | 45.0% | |
| TGTGTTGCCTTCATTGCCAA+TGG | + | chr4_4:60168690-60168709 | Msa0691860:CDS | 45.0% | |
| GCATCATCCATTGGCAATGA+AGG | - | chr4_4:60168700-60168719 | None:intergenic | 45.0% | |
| TATGTATCCAATCCCTGACG+AGG | + | chr4_4:60168795-60168814 | Msa0691860:CDS | 45.0% | |
| GTATATACCTCGTCAGGGAT+TGG | - | chr4_4:60168805-60168824 | None:intergenic | 45.0% | |
| CACACGTATATACCTCGTCA+GGG | - | chr4_4:60168810-60168829 | None:intergenic | 45.0% | |
| ACACACGTATATACCTCGTC+AGG | - | chr4_4:60168811-60168830 | None:intergenic | 45.0% | |
| AAACTGCTACGATGTGCAAG+TGG | + | chr4_4:60168912-60168931 | Msa0691860:intron | 45.0% | |
| AACTGCTACGATGTGCAAGT+GGG | + | chr4_4:60168913-60168932 | Msa0691860:intron | 45.0% | |
| ACCCACAATTAGGTTCCATG+TGG | + | chr4_4:60168940-60168959 | Msa0691860:intron | 45.0% | |
| GCCACATGGAACCTAATTGT+GGG | - | chr4_4:60168944-60168963 | None:intergenic | 45.0% | |
| AGCCACATGGAACCTAATTG+TGG | - | chr4_4:60168945-60168964 | None:intergenic | 45.0% | |
| TACGCACCAACTCGACTAAT+AGG | + | chr4_4:60169014-60169033 | Msa0691860:intron | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr4_4:60169127-60169146 | None:intergenic | 45.0% |
| GGCAAATAGTGCGTTGTGAT+TGG | + | chr4_4:60169155-60169174 | Msa0691860:intron | 45.0% | |
| GGATTAGAGTCGATCCGTTT+AGG | + | chr4_4:60169658-60169677 | Msa0691860:intron | 45.0% | |
| CTAACATCTCAGCAACCTGT+TGG | - | chr4_4:60169967-60169986 | None:intergenic | 45.0% | |
| GCTGAGATGTTAGTGAAGAG+TGG | + | chr4_4:60169974-60169993 | Msa0691860:CDS | 45.0% | |
| ATGCGAGTCTAAAAGGAGTG+AGG | - | chr4_4:60170180-60170199 | None:intergenic | 45.0% | |
| ATGGAAAGCCATCGGATATG+AGG | + | chr4_4:60170383-60170402 | Msa0691860:CDS | 45.0% | |
| !!! | GGGTCTCTTTTTGGTGTCAT+TGG | - | chr4_4:60170433-60170452 | None:intergenic | 45.0% |
| !! | GATGCAGTAGTTGTTGGTTC+TGG | + | chr4_4:60170573-60170592 | Msa0691860:CDS | 45.0% |
| GCTTCTGTCCTTTCAAATGC+AGG | + | chr4_4:60170615-60170634 | Msa0691860:CDS | 45.0% | |
| CTTTGTGGCCTGCATTTGAA+AGG | - | chr4_4:60170626-60170645 | None:intergenic | 45.0% | |
| !! | TTTGCTGGTTCAACAGTAGG+TGG | + | chr4_4:60170771-60170790 | Msa0691860:CDS | 45.0% |
| GTGGTGGTTCAGCTGTTAAT+TGG | + | chr4_4:60170790-60170809 | Msa0691860:CDS | 45.0% | |
| !! | GTCCCTTGTTTCTCTCCTTT+TGG | - | chr4_4:60171074-60171093 | None:intergenic | 45.0% |
| GCCAAAGTGACAATTTCTGC+AGG | + | chr4_4:60171275-60171294 | Msa0691860:CDS | 45.0% | |
| AGTGACAATTTCTGCAGGTG+GGG | + | chr4_4:60171280-60171299 | Msa0691860:CDS | 45.0% | |
| CCCATGTCATTAGTACAGGA+TGG | - | chr4_4:60171376-60171395 | None:intergenic | 45.0% | |
| AGTAATCTCGTCACAGAACC+TGG | + | chr4_4:60171516-60171535 | Msa0691860:intron | 45.0% | |
| CCCACTAAAAGTTACTAGCC+AGG | - | chr4_4:60171537-60171556 | None:intergenic | 45.0% | |
| ! | AGTTTGAGACTTGCGAATGG+TGG | - | chr4_4:60171574-60171593 | None:intergenic | 45.0% |
| ! | TCGAGTTTGAGACTTGCGAA+TGG | - | chr4_4:60171577-60171596 | None:intergenic | 45.0% |
| TGGAGTGATATTCGAGTGAG+GGG | + | chr4_4:60171716-60171735 | Msa0691860:intron | 45.0% | |
| AAGTCAAGTCCTGATTCCCA+TGG | - | chr4_4:60171984-60172003 | None:intergenic | 45.0% | |
| GTAGGAACACACAGAAGTGA+TGG | + | chr4_4:60172188-60172207 | Msa0691860:CDS | 45.0% | |
| CATTGTCACCAGGTGAGAAT+TGG | + | chr4_4:60172291-60172310 | Msa0691860:CDS | 45.0% | |
| GGATTAACACCAACAGCAGT+TGG | - | chr4_4:60172446-60172465 | None:intergenic | 45.0% | |
| !!! | TTTAATTTTTATAATCATAT+TGG | - | chr4_4:60169327-60169346 | None:intergenic | 5.0% |
| ATGTGGCTGCGTTGTGCATT+CGG | + | chr4_4:60168957-60168976 | Msa0691860:intron | 50.0% | |
| ! | CGTTGTGCATTCGGTGAAGT+TGG | + | chr4_4:60168966-60168985 | Msa0691860:intron | 50.0% |
| AGCCACACCTCCTTGAATTG+TGG | + | chr4_4:60169134-60169153 | Msa0691860:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr4_4:60169139-60169158 | None:intergenic | 50.0% | |
| AATCCGGCATGGAAAGCCAT+CGG | + | chr4_4:60170375-60170394 | Msa0691860:CDS | 50.0% | |
| TATCCGATGGCTTTCCATGC+CGG | - | chr4_4:60170381-60170400 | None:intergenic | 50.0% | |
| !! | GTAGTTGTTGGTTCTGGCTG+TGG | + | chr4_4:60170579-60170598 | Msa0691860:CDS | 50.0% |
| GAGACTTGCGAATGGTGGTT+GGG | - | chr4_4:60171569-60171588 | None:intergenic | 50.0% | |
| TGAGACTTGCGAATGGTGGT+TGG | - | chr4_4:60171570-60171589 | None:intergenic | 50.0% | |
| GGTGACAATGCTCCTTCCAT+TGG | - | chr4_4:60172281-60172300 | None:intergenic | 50.0% | |
| !! | ATGGAAGGAGCATTGTCACC+AGG | + | chr4_4:60172281-60172300 | Msa0691860:CDS | 50.0% |
| GTGAGAGTTGGGAAGCTGAA+GGG | + | chr4_4:60172393-60172412 | Msa0691860:CDS | 50.0% | |
| AGTGTGCTTCCAACTGCTGT+TGG | + | chr4_4:60172434-60172453 | Msa0691860:CDS | 50.0% | |
| TGCTACGATGTGCAAGTGGG+TGG | + | chr4_4:60168916-60168935 | Msa0691860:intron | 55.0% | |
| GCTACGATGTGCAAGTGGGT+GGG | + | chr4_4:60168917-60168936 | Msa0691860:intron | 55.0% | |
| AGTGGGTGGGACCCACAATT+AGG | + | chr4_4:60168930-60168949 | Msa0691860:intron | 55.0% | |
| GAATGCACAACGCAGCCACA+TGG | - | chr4_4:60168958-60168977 | None:intergenic | 55.0% | |
| TGCAGAGGGCTCTCAAGCTT+AGG | + | chr4_4:60170152-60170171 | Msa0691860:CDS | 55.0% | |
| CGAAATGGCACGTTGCAGCA+AGG | - | chr4_4:60170266-60170285 | None:intergenic | 55.0% | |
| !! | GTTGTTGGTTCTGGCTGTGG+AGG | + | chr4_4:60170582-60170601 | Msa0691860:CDS | 55.0% |
| ! | GCTGGTTCAACAGTAGGTGG+TGG | + | chr4_4:60170774-60170793 | Msa0691860:CDS | 55.0% |
| CTTGCGAATGGTGGTTGGGA+GGG | - | chr4_4:60171565-60171584 | None:intergenic | 55.0% | |
| ACTTGCGAATGGTGGTTGGG+AGG | - | chr4_4:60171566-60171585 | None:intergenic | 55.0% | |
| GCAGCAGGAGCTGTTGAAGT+AGG | + | chr4_4:60172170-60172189 | Msa0691860:CDS | 55.0% | |
| GGTGAGAGTTGGGAAGCTGA+AGG | + | chr4_4:60172392-60172411 | Msa0691860:CDS | 55.0% | |
| !! | GTTGGTTCTGGCTGTGGAGG+AGG | + | chr4_4:60170585-60170604 | Msa0691860:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 60168458 | 60172808 | 60168458 | ID=Msa0691860;Name=Msa0691860 |
| chr4_4 | mRNA | 60168458 | 60172808 | 60168458 | ID=Msa0691860-mRNA-1;Parent=Msa0691860;Name=Msa0691860-mRNA-1;_AED=0.11;_eAED=0.11;_QI=98|1|1|1|0.75|0.6|5|225|770 |
| chr4_4 | exon | 60168458 | 60168816 | 60168458 | ID=Msa0691860-mRNA-1:exon:16404;Parent=Msa0691860-mRNA-1 |
| chr4_4 | exon | 60169971 | 60170243 | 60169971 | ID=Msa0691860-mRNA-1:exon:16405;Parent=Msa0691860-mRNA-1 |
| chr4_4 | exon | 60170357 | 60171428 | 60170357 | ID=Msa0691860-mRNA-1:exon:16406;Parent=Msa0691860-mRNA-1 |
| chr4_4 | exon | 60171847 | 60172584 | 60171847 | ID=Msa0691860-mRNA-1:exon:16407;Parent=Msa0691860-mRNA-1 |
| chr4_4 | exon | 60172615 | 60172808 | 60172615 | ID=Msa0691860-mRNA-1:exon:16408;Parent=Msa0691860-mRNA-1 |
| chr4_4 | five_prime_UTR | 60168458 | 60168555 | 60168458 | ID=Msa0691860-mRNA-1:five_prime_utr;Parent=Msa0691860-mRNA-1 |
| chr4_4 | CDS | 60168556 | 60168816 | 60168556 | ID=Msa0691860-mRNA-1:cds;Parent=Msa0691860-mRNA-1 |
| chr4_4 | CDS | 60169971 | 60170243 | 60169971 | ID=Msa0691860-mRNA-1:cds;Parent=Msa0691860-mRNA-1 |
| chr4_4 | CDS | 60170357 | 60171428 | 60170357 | ID=Msa0691860-mRNA-1:cds;Parent=Msa0691860-mRNA-1 |
| chr4_4 | CDS | 60171847 | 60172553 | 60171847 | ID=Msa0691860-mRNA-1:cds;Parent=Msa0691860-mRNA-1 |
| chr4_4 | three_prime_UTR | 60172554 | 60172584 | 60172554 | ID=Msa0691860-mRNA-1:three_prime_utr;Parent=Msa0691860-mRNA-1 |
| chr4_4 | three_prime_UTR | 60172615 | 60172808 | 60172615 | ID=Msa0691860-mRNA-1:three_prime_utr;Parent=Msa0691860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
