Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649800 | XP_013456718.2 | 95.455 | 770 | 30 | 1 | 1 | 770 | 1 | 765 | 0.0 | 1490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649800 | sp|B5WWZ8|FAO1_LOTJA | 78.071 | 757 | 156 | 7 | 10 | 765 | 1 | 748 | 0.0 | 1196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007230 | Msa0649800 | 0.805362 | 1.384643e-49 | -8.615850e-47 |
| Msa0055590 | Msa0649800 | 0.811517 | 6.730556e-51 | -8.615850e-47 |
| Msa0114540 | Msa0649800 | -0.812739 | 3.643662e-51 | -8.615850e-47 |
| Msa0609090 | Msa0649800 | 0.934758 | 2.457904e-96 | -8.615850e-47 |
| Msa0626280 | Msa0649800 | 0.812693 | 3.728341e-51 | -8.615850e-47 |
| Msa0649800 | Msa0691860 | 0.934527 | 3.515744e-96 | -8.615850e-47 |
| Msa0649800 | Msa0708460 | 0.810007 | 1.427486e-50 | -8.615850e-47 |
| Msa0649800 | Msa0718470 | 0.821590 | 3.724668e-53 | -8.615850e-47 |
| Msa0649800 | Msa0734340 | 0.804487 | 2.110101e-49 | -8.615850e-47 |
| Msa0649800 | Msa0801100 | 0.829493 | 4.990667e-55 | -8.615850e-47 |
| Msa0649800 | Msa0968730 | 0.801686 | 8.009611e-49 | -8.615850e-47 |
| Msa0649800 | Msa1028270 | 0.817769 | 2.777255e-52 | -8.615850e-47 |
| Msa0649800 | Msa1112370 | 0.803873 | 2.831922e-49 | -8.615850e-47 |
| Msa0649800 | Msa1229600 | 0.800584 | 1.345684e-48 | -8.615850e-47 |
| Msa0649800 | Msa1363890 | 0.825912 | 3.618530e-54 | -8.615850e-47 |
| Msa0649800 | Msa1393410 | 0.813700 | 2.241512e-51 | -8.615850e-47 |
| Msa0649800 | Msa1435420 | 0.812672 | 3.768516e-51 | -8.615850e-47 |
| Msa0199820 | Msa0649800 | 0.802427 | 5.640716e-49 | -8.615850e-47 |
| Msa0217400 | Msa0649800 | 0.818187 | 2.233944e-52 | -8.615850e-47 |
| Msa0422500 | Msa0649800 | 0.860953 | 1.441103e-63 | -8.615850e-47 |
| Msa0430820 | Msa0649800 | 0.801458 | 8.919656e-49 | -8.615850e-47 |
| Msa0450350 | Msa0649800 | 0.859568 | 3.780311e-63 | -8.615850e-47 |
| Msa0266000 | Msa0649800 | -0.802909 | 4.484837e-49 | -8.615850e-47 |
| Msa0335040 | Msa0649800 | 0.807136 | 5.856977e-50 | -8.615850e-47 |
| Msa0492880 | Msa0649800 | 0.840476 | 8.496029e-58 | -8.615850e-47 |
| Msa0511250 | Msa0649800 | 0.858108 | 1.033046e-62 | -8.615850e-47 |
| Msa0570640 | Msa0649800 | 0.872022 | 4.376095e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649800 | MtrunA17_Chr4g0041761 | 95.431 | 766 | 30 | 1 | 1 | 766 | 1 | 761 | 0.0 | 1480 |
| Msa0649800 | MtrunA17_Chr7g0261561 | 56.991 | 751 | 298 | 11 | 15 | 761 | 5 | 734 | 0.0 | 839 |
| Msa0649800 | MtrunA17_Chr1g0187391 | 58.148 | 583 | 176 | 8 | 180 | 761 | 3 | 518 | 0.0 | 675 |
| Msa0649800 | MtrunA17_Chr5g0408241 | 43.329 | 787 | 379 | 17 | 21 | 763 | 64 | 827 | 0.0 | 591 |
| Msa0649800 | MtrunA17_Chr8g0369761 | 41.517 | 778 | 387 | 13 | 28 | 763 | 57 | 808 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649800 | AT3G23410.1 | 59.485 | 738 | 286 | 6 | 31 | 764 | 15 | 743 | 0.0 | 871 |
| Msa0649800 | AT3G23410.2 | 61.652 | 678 | 250 | 4 | 90 | 764 | 5 | 675 | 0.0 | 842 |
| Msa0649800 | AT4G28570.1 | 56.782 | 752 | 300 | 7 | 15 | 761 | 11 | 742 | 0.0 | 838 |
| Msa0649800 | AT4G28570.2 | 56.782 | 752 | 300 | 7 | 15 | 761 | 11 | 742 | 0.0 | 838 |
| Msa0649800 | AT1G03990.1 | 49.215 | 764 | 366 | 12 | 8 | 763 | 5 | 754 | 0.0 | 737 |
| Msa0649800 | AT4G19380.2 | 42.313 | 761 | 387 | 14 | 27 | 763 | 34 | 766 | 0.0 | 552 |
| Msa0649800 | AT4G19380.1 | 42.553 | 752 | 380 | 14 | 36 | 763 | 1 | 724 | 0.0 | 548 |
Find 150 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACATTTCTTCTTCTTTC+TGG | 0.073106 | 4_3:+56531094 | None:intergenic |
| GTCCCTTGTTTCTCTCCTTT+TGG | 0.180580 | 4_3:+56531221 | None:intergenic |
| TCTTGTTTGAAAATAATTAT+AGG | 0.260541 | 4_3:-56531127 | Msa0649800:CDS |
| CAACTTCTCAAGCTTGTCTT+TGG | 0.271024 | 4_3:-56532181 | Msa0649800:CDS |
| TGATTCCCTGGTGAATTTCT+TGG | 0.279412 | 4_3:+56531272 | None:intergenic |
| TTTCTTCTTCTTTCTGGTAT+TGG | 0.293147 | 4_3:+56531100 | None:intergenic |
| GTGATTAAATGTGCTGTTCT+TGG | 0.295870 | 4_3:+56530266 | None:intergenic |
| ATGGACCAACAATATGAAAA+TGG | 0.302883 | 4_3:-56531581 | Msa0649800:CDS |
| CTTGAGAAGTTGTGGATAAA+TGG | 0.306281 | 4_3:+56532192 | None:intergenic |
| AAACCACTAGAGATCATTAA+TGG | 0.311728 | 4_3:+56530975 | None:intergenic |
| TATTGTGGTTCATGTGGTTA+TGG | 0.314221 | 4_3:-56531248 | Msa0649800:CDS |
| TATTGATAAGGGTGATTCTA+TGG | 0.316225 | 4_3:-56532278 | Msa0649800:CDS |
| CAGAAAGAAGAAGAAATGTT+TGG | 0.347440 | 4_3:-56531093 | Msa0649800:CDS |
| TAAGCGAATGCGAGTCTAAA+AGG | 0.353718 | 4_3:+56532108 | None:intergenic |
| TTCTAGTGATGAATAATCTT+CGG | 0.371885 | 4_3:+56531613 | None:intergenic |
| TCAATATATCCATGGGAATC+AGG | 0.373653 | 4_3:-56530320 | Msa0649800:CDS |
| CATTGTCACCATGTGAGAAT+TGG | 0.375828 | 4_3:-56530001 | Msa0649800:CDS |
| TGGCTTATATCAACAAGGTT+GGG | 0.380283 | 4_3:-56532258 | Msa0649800:CDS |
| ATATGAAAAGAATTAATATA+TGG | 0.387736 | 4_3:+56533793 | None:intergenic |
| GTATACTTCTGCTCATCAAA+TGG | 0.389845 | 4_3:-56529973 | Msa0649800:CDS |
| TATACTTCTGCTCATCAAAT+GGG | 0.393187 | 4_3:-56529972 | Msa0649800:CDS |
| TGCTCTGTCTTAGTAAGAAA+TGG | 0.394689 | 4_3:-56532215 | Msa0649800:CDS |
| GACTCTACTGTTTAAAGTCT+TGG | 0.401679 | 4_3:+56531061 | None:intergenic |
| TCTCTAGAACAATCACTTTG+TGG | 0.413037 | 4_3:+56531654 | None:intergenic |
| CAAAATCAAGTACTAAGAAA+AGG | 0.418237 | 4_3:-56531329 | Msa0649800:CDS |
| CAGAAGCAGTAATATTGATA+AGG | 0.422013 | 4_3:-56532290 | Msa0649800:CDS |
| TCTAGTGATGAATAATCTTC+GGG | 0.422485 | 4_3:+56531614 | None:intergenic |
| GATGCAGTAGTTGTTGGTTC+TGG | 0.425266 | 4_3:-56531719 | Msa0649800:CDS |
| CACAAAATGTGTTGAAAGAA+TGG | 0.430850 | 4_3:-56531460 | Msa0649800:CDS |
| AGAAAGAAGAAGAAATGTTT+GGG | 0.431123 | 4_3:-56531092 | Msa0649800:CDS |
| TTGGGGACTTTGTTGATTTG+TGG | 0.432818 | 4_3:-56532240 | Msa0649800:CDS |
| TGTGGTTATGGTTGTCCAAA+AGG | 0.434505 | 4_3:-56531236 | Msa0649800:CDS |
| GTAGTTGTTGGTTCTGGCTG+TGG | 0.438334 | 4_3:-56531713 | Msa0649800:CDS |
| AGAAAAGGGTGCCAAAATCT+TGG | 0.440950 | 4_3:-56531314 | Msa0649800:CDS |
| CTTGTAGATGCTGTTGAAAA+AGG | 0.445193 | 4_3:-56531185 | Msa0649800:CDS |
| GAAGGTGCTGTTGATGAAAA+TGG | 0.445503 | 4_3:-56529921 | Msa0649800:CDS |
| GTTGACTGAATAGTGATCAT+AGG | 0.452880 | 4_3:+56529828 | None:intergenic |
| AAAGGTGCTGTGATCATAAC+AGG | 0.453948 | 4_3:-56531167 | Msa0649800:CDS |
| GTGGTGGTTCAGCTGTTAAT+TGG | 0.455365 | 4_3:-56531502 | Msa0649800:CDS |
| GCATCATCCATTGGCAATGA+AGG | 0.456373 | 4_3:+56533593 | None:intergenic |
| ACCTGCAGAAATTGTCACTT+TGG | 0.458514 | 4_3:+56531016 | None:intergenic |
| CAGAAATGTTGAAGAAAGAC+TGG | 0.461374 | 4_3:+56533522 | None:intergenic |
| TATCCGATGGCTTTCCATGC+CGG | 0.465397 | 4_3:+56531914 | None:intergenic |
| TCATATTGTTGGTCCATTGA+AGG | 0.466560 | 4_3:+56531587 | None:intergenic |
| AAAGTGATTGTTCTAGAGAA+AGG | 0.469246 | 4_3:-56531650 | Msa0649800:CDS |
| ACACACATATATACCTCGTC+AGG | 0.472782 | 4_3:+56533482 | None:intergenic |
| ATGGCTTATATCAACAAGGT+TGG | 0.474407 | 4_3:-56532259 | Msa0649800:CDS |
| GAAGAAATGTTTGGGAGTGT+TGG | 0.474637 | 4_3:-56531084 | Msa0649800:CDS |
| ATAATTGAGACACCATTACT+TGG | 0.476662 | 4_3:-56530359 | Msa0649800:CDS |
| TGCAGAGGGCTCTCAAGCTT+AGG | 0.477034 | 4_3:-56532140 | Msa0649800:CDS |
| TCAAATGGGGAGTTGTAGAA+TGG | 0.477133 | 4_3:-56529958 | Msa0649800:CDS |
| GCTTCTGTCCTTTCAAATGC+AGG | 0.481266 | 4_3:-56531677 | Msa0649800:CDS |
| GTTGGTTCTGGCTGTGGAGG+AGG | 0.482681 | 4_3:-56531707 | Msa0649800:CDS |
| AAATGTGATGCAGTAGTTGT+TGG | 0.485936 | 4_3:-56531725 | Msa0649800:CDS |
| ATTAAACTTTATATGTGAGA+TGG | 0.486368 | 4_3:-56529521 | Msa0649800:three_prime_UTR |
| ATATATACCTCGTCAGGGAT+TGG | 0.487511 | 4_3:+56533488 | None:intergenic |
| GGTGACAATGCTCCTTCCAT+TGG | 0.488373 | 4_3:+56530014 | None:intergenic |
| AGAAGCAGTAATATTGATAA+GGG | 0.492373 | 4_3:-56532289 | Msa0649800:CDS |
| AAAATCAAGTACTAAGAAAA+GGG | 0.492431 | 4_3:-56531328 | Msa0649800:CDS |
| CTTTGTGGCCTGCATTTGAA+AGG | 0.494540 | 4_3:+56531669 | None:intergenic |
| TGATGAAAATGGTGAGAGTT+GGG | 0.496388 | 4_3:-56529910 | Msa0649800:CDS |
| CTTAGAGTATCTATCTGCTA+TGG | 0.499902 | 4_3:-56531405 | Msa0649800:CDS |
| CATATGCATCAATATATCCA+TGG | 0.500085 | 4_3:-56530328 | Msa0649800:CDS |
| GAAGATTATTCATCACTAGA+AGG | 0.507111 | 4_3:-56531611 | Msa0649800:CDS |
| TGTGTTGCCTTCATTGCCAA+TGG | 0.507516 | 4_3:-56533600 | Msa0649800:CDS |
| GCTGGTTCAACAGTAGGTGG+TGG | 0.508719 | 4_3:-56531518 | Msa0649800:CDS |
| TTAATGATGAGGATACTTTG+TGG | 0.510276 | 4_3:+56530411 | None:intergenic |
| GCAGCAGGAGCTGTTGAAGT+AGG | 0.511117 | 4_3:-56530122 | Msa0649800:CDS |
| TATCCCCATGTCATTAGTAC+AGG | 0.513550 | 4_3:+56530915 | None:intergenic |
| ATCACTAGAAGGTCCTTCAA+TGG | 0.515670 | 4_3:-56531600 | Msa0649800:CDS |
| AGTGTGCTTCCAACTGCTGT+TGG | 0.516894 | 4_3:-56529858 | Msa0649800:CDS |
| TAATGAGAACACTAGCGAAA+AGG | 0.517011 | 4_3:-56530066 | Msa0649800:CDS |
| CACAATGAAGCTACAAATTG+AGG | 0.519287 | 4_3:-56531039 | Msa0649800:CDS |
| GGATTAACACCAACAGCAGT+TGG | 0.519690 | 4_3:+56529849 | None:intergenic |
| TAATTATACACCATATATGT+TGG | 0.520953 | 4_3:-56533837 | None:intergenic |
| TTTCTAAGAGCATCATCCAT+TGG | 0.520961 | 4_3:+56533584 | None:intergenic |
| GAAACTGTGTGTGAGAGAAT+TGG | 0.522367 | 4_3:-56531383 | Msa0649800:CDS |
| TTGAGTCAAGTGTGACATTG+AGG | 0.526976 | 4_3:+56531768 | None:intergenic |
| ATGGAAAGCCATCGGATATG+AGG | 0.528852 | 4_3:-56531909 | Msa0649800:CDS |
| AAAGTGACAATTTCTGCAGG+TGG | 0.529305 | 4_3:-56531014 | Msa0649800:CDS |
| AGAAGAAAACAAAGAGGCAT+AGG | 0.530309 | 4_3:+56532076 | None:intergenic |
| GGCTTATATCAACAAGGTTG+GGG | 0.532309 | 4_3:-56532257 | Msa0649800:CDS |
| AACGAAAATTGTACACAAGA+AGG | 0.534959 | 4_3:-56531356 | Msa0649800:CDS |
| AAGACAAGCTTGAGAAGTTG+TGG | 0.536089 | 4_3:+56532184 | None:intergenic |
| TATCACAGGTAAAATCTATG+AGG | 0.536553 | 4_3:-56530453 | Msa0649800:intron |
| CACAACACAGAAAGAAAGAT+GGG | 0.536560 | 4_3:-56533725 | Msa0649800:CDS |
| CTGAGAATTCTAATAGCAGC+AGG | 0.537001 | 4_3:-56530137 | Msa0649800:CDS |
| ATACTCTAAGCTTTCAAAGA+GGG | 0.538565 | 4_3:+56531418 | None:intergenic |
| TATAGATAGTGTTTATCCAA+TGG | 0.540962 | 4_3:-56530030 | Msa0649800:CDS |
| GCCAAAGTGACAATTTCTGC+AGG | 0.549592 | 4_3:-56531017 | Msa0649800:CDS |
| TTGATGAAAATGGTGAGAGT+TGG | 0.551525 | 4_3:-56529911 | Msa0649800:CDS |
| AAGAGAAAAGATTGTGCAGA+GGG | 0.551533 | 4_3:-56532154 | Msa0649800:CDS |
| CAAATGGGGAGTTGTAGAAT+GGG | 0.552016 | 4_3:-56529957 | Msa0649800:CDS |
| TGAATGATCATTTAATGATG+AGG | 0.555682 | 4_3:+56530400 | None:intergenic |
| GAACCACAATAATGATTCCC+TGG | 0.558303 | 4_3:+56531260 | None:intergenic |
| TTTGCTGGTTCAACAGTAGG+TGG | 0.559029 | 4_3:-56531521 | Msa0649800:CDS |
| TATATTGATGCATATGATGA+TGG | 0.559413 | 4_3:+56530335 | None:intergenic |
| AATCATTATTGTGGTTCATG+TGG | 0.563673 | 4_3:-56531254 | Msa0649800:CDS |
| TCCATCCTGTACTAATGACA+TGG | 0.567525 | 4_3:-56530920 | Msa0649800:CDS |
| TCACAACACAGAAAGAAAGA+TGG | 0.567714 | 4_3:-56533726 | Msa0649800:CDS |
| GGTGAGAGTTGGGAAGCTGA+AGG | 0.571561 | 4_3:-56529900 | Msa0649800:CDS |
| AAGTGACAATTTCTGCAGGT+GGG | 0.574604 | 4_3:-56531013 | Msa0649800:CDS |
| AAGTCAAGTCCTGATTCCCA+TGG | 0.575765 | 4_3:+56530311 | None:intergenic |
| AGTGACAATTTCTGCAGGTG+GGG | 0.576018 | 4_3:-56531012 | Msa0649800:CDS |
| ATAATAAGAGACAAAGCAAG+TGG | 0.576779 | 4_3:-56530242 | Msa0649800:CDS |
| TACTCTAAGCTTTCAAAGAG+GGG | 0.577026 | 4_3:+56531419 | None:intergenic |
| GATAGAGAGAATATGAGAGC+TGG | 0.578200 | 4_3:-56530173 | Msa0649800:CDS |
| CCCATGTCATTAGTACAGGA+TGG | 0.579090 | 4_3:+56530919 | None:intergenic |
| GTTGTTGGTTCTGGCTGTGG+AGG | 0.580402 | 4_3:-56531710 | Msa0649800:CDS |
| TAGAATGGGAGTGAATGAAA+AGG | 0.583569 | 4_3:-56529943 | Msa0649800:CDS |
| TCACCAGGGAATCATTATTG+TGG | 0.584122 | 4_3:-56531263 | Msa0649800:CDS |
| ATATGCATCAATATATCCAT+GGG | 0.588719 | 4_3:-56530327 | Msa0649800:CDS |
| AACAAGGGACTCAAGTTACA+TGG | 0.588903 | 4_3:-56531208 | Msa0649800:CDS |
| GATAGTGTTTATCCAATGGA+AGG | 0.590334 | 4_3:-56530026 | Msa0649800:CDS |
| TCTCTCACACCACTCAACAA+TGG | 0.593983 | 4_3:+56533689 | None:intergenic |
| CAACAATCTCTATCTAACAA+AGG | 0.604364 | 4_3:-56531791 | Msa0649800:CDS |
| GATACTCTAAGCTTTCAAAG+AGG | 0.612780 | 4_3:+56531417 | None:intergenic |
| GTAGGAACACACAGAAGTGA+TGG | 0.615648 | 4_3:-56530104 | Msa0649800:CDS |
| ATCACAGGTAAAATCTATGA+GGG | 0.616658 | 4_3:-56530452 | Msa0649800:intron |
| TTCTATGGCTTATATCAACA+AGG | 0.617366 | 4_3:-56532263 | Msa0649800:CDS |
| CCATCCTGTACTAATGACAT+GGG | 0.618479 | 4_3:-56530919 | Msa0649800:CDS |
| TGTCCAAAAGGAGAGAAACA+AGG | 0.624436 | 4_3:-56531224 | Msa0649800:CDS |
| TGTTGATACCTCATATCCGA+TGG | 0.624751 | 4_3:+56531901 | None:intergenic |
| AAAATGGTGATAATCCGGCA+TGG | 0.627391 | 4_3:-56531928 | Msa0649800:CDS |
| GCTGAGATGTTAGTGAAGAG+TGG | 0.628102 | 4_3:-56532318 | Msa0649800:CDS |
| AATCCGGCATGGAAAGCCAT+CGG | 0.629555 | 4_3:-56531917 | Msa0649800:CDS |
| CCACCATTAATGATCTCTAG+TGG | 0.630098 | 4_3:-56530978 | Msa0649800:CDS |
| GTGAGAGTTGGGAAGCTGAA+GGG | 0.632909 | 4_3:-56529899 | Msa0649800:CDS |
| CACACATATATACCTCGTCA+GGG | 0.633164 | 4_3:+56533483 | None:intergenic |
| GAATCAAAATCAGATCTCAA+AGG | 0.635229 | 4_3:-56530885 | Msa0649800:intron |
| TATGATGATGGTCCAAGTAA+TGG | 0.637944 | 4_3:+56530347 | None:intergenic |
| ATGGGAGTGAATGAAAAGGA+AGG | 0.638461 | 4_3:-56529939 | Msa0649800:CDS |
| CCCAAGAGAAGAAAACAAAG+AGG | 0.641068 | 4_3:+56532070 | None:intergenic |
| ATGAGAGCTGGTTTACAACA+AGG | 0.645336 | 4_3:-56530161 | Msa0649800:CDS |
| GTTTGTCATCCATTGTTGAG+TGG | 0.646755 | 4_3:-56533698 | Msa0649800:CDS |
| GACCAACAATATGAAAATGG+AGG | 0.646970 | 4_3:-56531578 | Msa0649800:CDS |
| GTCACTAACAAGCATATGTG+AGG | 0.652709 | 4_3:-56533624 | Msa0649800:CDS |
| GAGAATAGCAAATACAAACA+TGG | 0.657233 | 4_3:-56533668 | Msa0649800:CDS |
| GTCCAAAAGGAGAGAAACAA+GGG | 0.659274 | 4_3:-56531223 | Msa0649800:CDS |
| TATGTGCCAAGAAATTCACC+AGG | 0.661064 | 4_3:-56531278 | Msa0649800:CDS |
| TACAAATTCCAATTCTCACA+TGG | 0.665089 | 4_3:+56529993 | None:intergenic |
| ATACTTCTGCTCATCAAATG+GGG | 0.665706 | 4_3:-56529971 | Msa0649800:CDS |
| AAAGAGAAAAGATTGTGCAG+AGG | 0.669869 | 4_3:-56532155 | Msa0649800:CDS |
| TATGTATCCAATCCCTGACG+AGG | 0.674932 | 4_3:-56533495 | Msa0649800:intron |
| ACAGGTAAAATCTATGAGGG+AGG | 0.676529 | 4_3:-56530449 | Msa0649800:intron |
| CCACTAGAGATCATTAATGG+TGG | 0.685061 | 4_3:+56530978 | None:intergenic |
| TGATTATGATGAATCAAGCA+AGG | 0.685314 | 4_3:-56533549 | Msa0649800:CDS |
| ATGCGAGTCTAAAAGGAGTG+AGG | 0.691376 | 4_3:+56532115 | None:intergenic |
| CATCCTGTACTAATGACATG+GGG | 0.691532 | 4_3:-56530918 | Msa0649800:CDS |
| ATGTGCCAAGAAATTCACCA+GGG | 0.759136 | 4_3:-56531277 | Msa0649800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGAAAAGAATTAATATA+TGG | + | chr4_3:56529547-56529566 | None:intergenic | 10.0% |
| !! | AAAAATTAAAATAACAACAT+CGG | - | chr4_3:56530384-56530403 | Msa0649800:CDS | 10.0% |
| !!! | CTTCTTATAAATTTATTTTA+GGG | + | chr4_3:56530617-56530636 | None:intergenic | 10.0% |
| !!! | ACTTCTTATAAATTTATTTT+AGG | + | chr4_3:56530618-56530637 | None:intergenic | 10.0% |
| !!! | TATTAACTAGTTCTTTTATA+AGG | - | chr4_3:56529572-56529591 | Msa0649800:three_prime_UTR | 15.0% |
| !!! | TTGAAAAATTTTAGAGTAAA+GGG | + | chr4_3:56530572-56530591 | None:intergenic | 15.0% |
| !!! | TTTGAAAAATTTTAGAGTAA+AGG | + | chr4_3:56530573-56530592 | None:intergenic | 15.0% |
| !! | ATAATGTAAAGATCTAATAT+GGG | - | chr4_3:56530682-56530701 | Msa0649800:intron | 15.0% |
| !! | ACTCTTTATAAAATTATGTA+AGG | + | chr4_3:56530829-56530848 | None:intergenic | 15.0% |
| !!! | TCTTGTTTGAAAATAATTAT+AGG | - | chr4_3:56532210-56532229 | Msa0649800:CDS | 15.0% |
| !!! | GTTTTTTTTAACCATATTAT+TGG | - | chr4_3:56532510-56532529 | Msa0649800:intron | 15.0% |
| !!! | AGAATTTTTCAAGAAATAGT+TGG | - | chr4_3:56530115-56530134 | Msa0649800:CDS | 20.0% |
| !!! | AATAGTTGGCAAATTTTAAT+TGG | - | chr4_3:56530129-56530148 | Msa0649800:CDS | 20.0% |
| !! | TAACGTTAAATCATATTAGT+CGG | + | chr4_3:56530285-56530304 | None:intergenic | 20.0% |
| !! | CAATTAAAATTGAACAGTTA+TGG | - | chr4_3:56530326-56530345 | Msa0649800:CDS | 20.0% |
| !! | AAATTGAACTTTAAACTTTC+AGG | + | chr4_3:56530456-56530475 | None:intergenic | 20.0% |
| !! | CATAATGTAAAGATCTAATA+TGG | - | chr4_3:56530681-56530700 | Msa0649800:intron | 20.0% |
| !! | ATATAAGTTTGTAAGATAAG+AGG | + | chr4_3:56530856-56530875 | None:intergenic | 20.0% |
| !! | CAAATAAGATATATTAGATG+AGG | + | chr4_3:56530924-56530943 | None:intergenic | 20.0% |
| !!! | ATTTTGTAGGTTGATAAAAA+TGG | - | chr4_3:56531393-56531412 | Msa0649800:CDS | 20.0% |
| !! | AAAATCAAGTACTAAGAAAA+GGG | - | chr4_3:56532009-56532028 | Msa0649800:intron | 20.0% |
| !! | GGTTTAAAGAATAAAAACAT+TGG | - | chr4_3:56532380-56532399 | Msa0649800:intron | 20.0% |
| !! | TAAAGAATAAAAACATTGGT+AGG | - | chr4_3:56532384-56532403 | Msa0649800:intron | 20.0% |
| !!! | AATGATCTTTTATTTTGTCA+CGG | + | chr4_3:56533732-56533751 | None:intergenic | 20.0% |
| !! | ATTAAACTTTATATGTGAGA+TGG | - | chr4_3:56533816-56533835 | Msa0649800:five_prime_UTR | 20.0% |
| !! | ATTTTTGTGACCAACATATA+TGG | + | chr4_3:56529513-56529532 | None:intergenic | 25.0% |
| !!! | TAACTAGTTCTTTTATAAGG+TGG | - | chr4_3:56529575-56529594 | Msa0649800:three_prime_UTR | 25.0% |
| ! | TGGTGTGTAATATAAAAAGT+TGG | + | chr4_3:56530733-56530752 | None:intergenic | 25.0% |
| ! | AGAAGCAGTAATATTGATAA+GGG | - | chr4_3:56531048-56531067 | Msa0649800:CDS | 25.0% |
| !! | TTAAGAAAGTGACATTTTGT+AGG | - | chr4_3:56531380-56531399 | Msa0649800:CDS | 25.0% |
| ! | TGATAAAAATGGTGATAATC+CGG | - | chr4_3:56531404-56531423 | Msa0649800:CDS | 25.0% |
| !! | TTCTATAATTCCCTTTTCAA+GGG | + | chr4_3:56531499-56531518 | None:intergenic | 25.0% |
| !! | TTTCTATAATTCCCTTTTCA+AGG | + | chr4_3:56531500-56531519 | None:intergenic | 25.0% |
| ! | TTCTAGTGATGAATAATCTT+CGG | + | chr4_3:56531727-56531746 | None:intergenic | 25.0% |
| !!! | TCAAGAATAGTTATTTTTGC+TGG | - | chr4_3:56531801-56531820 | Msa0649800:CDS | 25.0% |
| !! | CTTTTCTTAGTACTTGATTT+TGG | + | chr4_3:56532010-56532029 | None:intergenic | 25.0% |
| ! | CAAAATCAAGTACTAAGAAA+AGG | - | chr4_3:56532008-56532027 | Msa0649800:intron | 25.0% |
| ! | AGAAAGAAGAAGAAATGTTT+GGG | - | chr4_3:56532245-56532264 | Msa0649800:CDS | 25.0% |
| ! | ATCTTAACTAGTTACATGTT+TGG | - | chr4_3:56532726-56532745 | Msa0649800:intron | 25.0% |
| ! | CATAGGAAAAATAATAAGCT+TGG | + | chr4_3:56532840-56532859 | None:intergenic | 25.0% |
| !! | TCATCTATTTGATTTATCAC+AGG | - | chr4_3:56532870-56532889 | Msa0649800:intron | 25.0% |
| ! | TGAATGATCATTTAATGATG+AGG | + | chr4_3:56532940-56532959 | None:intergenic | 25.0% |
| ! | TATATTGATGCATATGATGA+TGG | + | chr4_3:56533005-56533024 | None:intergenic | 25.0% |
| ! | ATATGCATCAATATATCCAT+GGG | - | chr4_3:56533010-56533029 | Msa0649800:intron | 25.0% |
| ! | TATAGATAGTGTTTATCCAA+TGG | - | chr4_3:56533307-56533326 | Msa0649800:intron | 25.0% |
| !! | CTGCATTTTGTATTTCAAAT+AGG | - | chr4_3:56533531-56533550 | Msa0649800:CDS | 25.0% |
| !! | AATAGGATTGTAGATTTTCT+TGG | - | chr4_3:56533548-56533567 | Msa0649800:CDS | 25.0% |
| !! | ATTGTAGATTTTCTTGGAAA+GGG | - | chr4_3:56533554-56533573 | Msa0649800:CDS | 25.0% |
| GAGAATAGCAAATACAAACA+TGG | - | chr4_3:56529669-56529688 | Msa0649800:three_prime_UTR | 30.0% | |
| ! | ATACAAACATGGATTTTCTG+TGG | - | chr4_3:56529680-56529699 | Msa0649800:three_prime_UTR | 30.0% |
| TGATTATGATGAATCAAGCA+AGG | - | chr4_3:56529788-56529807 | Msa0649800:CDS | 30.0% | |
| ! | TTGCATTCAGGAATTTCTTT+TGG | + | chr4_3:56529938-56529957 | None:intergenic | 30.0% |
| TCGGAAAAACTCAAAATGTT+TGG | - | chr4_3:56530403-56530422 | Msa0649800:CDS | 30.0% | |
| ACTCAAAATGTTTGGTATAG+TGG | - | chr4_3:56530411-56530430 | Msa0649800:CDS | 30.0% | |
| ! | CAATTTCTGCTTGTGTTTTT+AGG | - | chr4_3:56530470-56530489 | Msa0649800:intron | 30.0% |
| !! | AAAATTGACTTGCAAGGTAA+GGG | + | chr4_3:56530645-56530664 | None:intergenic | 30.0% |
| !! | TAAAATTGACTTGCAAGGTA+AGG | + | chr4_3:56530646-56530665 | None:intergenic | 30.0% |
| !! | CCATATAAAATTGACTTGCA+AGG | + | chr4_3:56530651-56530670 | None:intergenic | 30.0% |
| ! | CCTTGCAAGTCAATTTTATA+TGG | - | chr4_3:56530648-56530667 | Msa0649800:intron | 30.0% |
| ! | CCAAAATTGTTAATTTGGCT+TGG | + | chr4_3:56530753-56530772 | None:intergenic | 30.0% |
| ! | CCAAGCCAAATTAACAATTT+TGG | - | chr4_3:56530750-56530769 | Msa0649800:intron | 30.0% |
| CCTGTCCAAAATTGTTAATT+TGG | + | chr4_3:56530758-56530777 | None:intergenic | 30.0% | |
| ! | CCAAATTAACAATTTTGGAC+AGG | - | chr4_3:56530755-56530774 | Msa0649800:intron | 30.0% |
| ! | AATTAACAATTTTGGACAGG+AGG | - | chr4_3:56530758-56530777 | Msa0649800:intron | 30.0% |
| ! | ATTAACAATTTTGGACAGGA+GGG | - | chr4_3:56530759-56530778 | Msa0649800:intron | 30.0% |
| !! | CACTATTTCTATGTTGAACT+TGG | + | chr4_3:56530796-56530815 | None:intergenic | 30.0% |
| GTTCAACATAGAAATAGTGT+TGG | - | chr4_3:56530797-56530816 | Msa0649800:intron | 30.0% | |
| ATTTGAACACATGCAAACTA+TGG | - | chr4_3:56530894-56530913 | Msa0649800:CDS | 30.0% | |
| TTTGAACACATGCAAACTAT+GGG | - | chr4_3:56530895-56530914 | Msa0649800:CDS | 30.0% | |
| CAGAAGCAGTAATATTGATA+AGG | - | chr4_3:56531047-56531066 | Msa0649800:CDS | 30.0% | |
| TATTGATAAGGGTGATTCTA+TGG | - | chr4_3:56531059-56531078 | Msa0649800:CDS | 30.0% | |
| TTCTATGGCTTATATCAACA+AGG | - | chr4_3:56531074-56531093 | Msa0649800:CDS | 30.0% | |
| ATTATTGTGAGTGTACGAAA+TGG | + | chr4_3:56531326-56531345 | None:intergenic | 30.0% | |
| !! | TCTATAATTCCCTTTTCAAG+GGG | + | chr4_3:56531498-56531517 | None:intergenic | 30.0% |
| CAACAATCTCTATCTAACAA+AGG | - | chr4_3:56531546-56531565 | Msa0649800:CDS | 30.0% | |
| !! | AAAGTGATTGTTCTAGAGAA+AGG | - | chr4_3:56531687-56531706 | Msa0649800:CDS | 30.0% |
| TCTAGTGATGAATAATCTTC+GGG | + | chr4_3:56531726-56531745 | None:intergenic | 30.0% | |
| GAAGATTATTCATCACTAGA+AGG | - | chr4_3:56531726-56531745 | Msa0649800:CDS | 30.0% | |
| ATGGACCAACAATATGAAAA+TGG | - | chr4_3:56531756-56531775 | Msa0649800:CDS | 30.0% | |
| ! | TACCTCCATTTTCATATTGT+TGG | + | chr4_3:56531764-56531783 | None:intergenic | 30.0% |
| ! | CATTCTTTCAACACATTTTG+TGG | + | chr4_3:56531879-56531898 | None:intergenic | 30.0% |
| CACAAAATGTGTTGAAAGAA+TGG | - | chr4_3:56531877-56531896 | Msa0649800:CDS | 30.0% | |
| ATACTCTAAGCTTTCAAAGA+GGG | + | chr4_3:56531922-56531941 | None:intergenic | 30.0% | |
| AACGAAAATTGTACACAAGA+AGG | - | chr4_3:56531981-56532000 | Msa0649800:intron | 30.0% | |
| ! | CAACTTTTAAGCCAAGATTT+TGG | + | chr4_3:56532037-56532056 | None:intergenic | 30.0% |
| AATCATTATTGTGGTTCATG+TGG | - | chr4_3:56532083-56532102 | Msa0649800:CDS | 30.0% | |
| ! | TTTCTTCTTCTTTCTGGTAT+TGG | + | chr4_3:56532240-56532259 | None:intergenic | 30.0% |
| CAAACATTTCTTCTTCTTTC+TGG | + | chr4_3:56532246-56532265 | None:intergenic | 30.0% | |
| CAGAAAGAAGAAGAAATGTT+TGG | - | chr4_3:56532244-56532263 | Msa0649800:CDS | 30.0% | |
| AAACCACTAGAGATCATTAA+TGG | + | chr4_3:56532365-56532384 | None:intergenic | 30.0% | |
| !!! | TGAGATCTGATTTTGATTCT+GGG | + | chr4_3:56532451-56532470 | None:intergenic | 30.0% |
| !!! | TTGAGATCTGATTTTGATTC+TGG | + | chr4_3:56532452-56532471 | None:intergenic | 30.0% |
| GAATCAAAATCAGATCTCAA+AGG | - | chr4_3:56532452-56532471 | Msa0649800:intron | 30.0% | |
| ATAACTTGGCACCAATAATA+TGG | + | chr4_3:56532524-56532543 | None:intergenic | 30.0% | |
| !!! | CCAAGTTATCACTGATTTTT+CGG | - | chr4_3:56532535-56532554 | Msa0649800:intron | 30.0% |
| CAACTTTATATTTGTACGAG+TGG | + | chr4_3:56532674-56532693 | None:intergenic | 30.0% | |
| CACTCGTACAAATATAAAGT+TGG | - | chr4_3:56532672-56532691 | Msa0649800:intron | 30.0% | |
| TTTGTGTTTGTTTGATATCG+CGG | + | chr4_3:56532806-56532825 | None:intergenic | 30.0% | |
| TAGATGAAAATACAGCTCAT+AGG | + | chr4_3:56532857-56532876 | None:intergenic | 30.0% | |
| TATCACAGGTAAAATCTATG+AGG | - | chr4_3:56532884-56532903 | Msa0649800:intron | 30.0% | |
| ATCACAGGTAAAATCTATGA+GGG | - | chr4_3:56532885-56532904 | Msa0649800:intron | 30.0% | |
| TTAATGATGAGGATACTTTG+TGG | + | chr4_3:56532929-56532948 | None:intergenic | 30.0% | |
| ATAATTGAGACACCATTACT+TGG | - | chr4_3:56532978-56532997 | Msa0649800:intron | 30.0% | |
| CATATGCATCAATATATCCA+TGG | - | chr4_3:56533009-56533028 | Msa0649800:intron | 30.0% | |
| ATAATAAGAGACAAAGCAAG+TGG | - | chr4_3:56533095-56533114 | Msa0649800:intron | 30.0% | |
| TACAAATTCCAATTCTCACA+TGG | + | chr4_3:56533347-56533366 | None:intergenic | 30.0% | |
| TATACTTCTGCTCATCAAAT+GGG | - | chr4_3:56533365-56533384 | Msa0649800:intron | 30.0% | |
| ! | GATTGTAGATTTTCTTGGAA+AGG | - | chr4_3:56533553-56533572 | Msa0649800:CDS | 30.0% |
| CAATAAGTCAGATGAAATCA+CGG | - | chr4_3:56533624-56533643 | Msa0649800:CDS | 30.0% | |
| ! | AGCTTTTGCAAAACTTAACA+TGG | + | chr4_3:56533654-56533673 | None:intergenic | 30.0% |
| TCACAACACAGAAAGAAAGA+TGG | - | chr4_3:56529611-56529630 | Msa0649800:three_prime_UTR | 35.0% | |
| CACAACACAGAAAGAAAGAT+GGG | - | chr4_3:56529612-56529631 | Msa0649800:three_prime_UTR | 35.0% | |
| !! | TTTCTAAGAGCATCATCCAT+TGG | + | chr4_3:56529756-56529775 | None:intergenic | 35.0% |
| CAGAAATGTTGAAGAAAGAC+TGG | + | chr4_3:56529818-56529837 | None:intergenic | 35.0% | |
| ! | CATTTTCCTATTAGTCGAGT+TGG | + | chr4_3:56530070-56530089 | None:intergenic | 35.0% |
| AACTTTAAACTTTCAGGCTC+TGG | + | chr4_3:56530450-56530469 | None:intergenic | 35.0% | |
| !!! | TGCTTGTGTTTTTAGGAAAG+AGG | - | chr4_3:56530477-56530496 | Msa0649800:intron | 35.0% |
| TATCTTGTCTGTCTTAGACT+AGG | - | chr4_3:56530539-56530558 | Msa0649800:intron | 35.0% | |
| ATCTTGTCTGTCTTAGACTA+GGG | - | chr4_3:56530540-56530559 | Msa0649800:intron | 35.0% | |
| ! | TTAACAATTTTGGACAGGAG+GGG | - | chr4_3:56530760-56530779 | Msa0649800:intron | 35.0% |
| TCTAAATGTTCAATGCCAAC+AGG | - | chr4_3:56530994-56531013 | Msa0649800:CDS | 35.0% | |
| ATGGCTTATATCAACAAGGT+TGG | - | chr4_3:56531078-56531097 | Msa0649800:CDS | 35.0% | |
| TGGCTTATATCAACAAGGTT+GGG | - | chr4_3:56531079-56531098 | Msa0649800:CDS | 35.0% | |
| TGCTCTGTCTTAGTAAGAAA+TGG | - | chr4_3:56531122-56531141 | Msa0649800:CDS | 35.0% | |
| CTTGAGAAGTTGTGGATAAA+TGG | + | chr4_3:56531148-56531167 | None:intergenic | 35.0% | |
| AAAGAGAAAAGATTGTGCAG+AGG | - | chr4_3:56531182-56531201 | Msa0649800:CDS | 35.0% | |
| AAGAGAAAAGATTGTGCAGA+GGG | - | chr4_3:56531183-56531202 | Msa0649800:CDS | 35.0% | |
| ! | AGAAGAAAACAAAGAGGCAT+AGG | + | chr4_3:56531264-56531283 | None:intergenic | 35.0% |
| !!! | CCTCTTTGTTTTCTTCTCTT+GGG | - | chr4_3:56531267-56531286 | Msa0649800:CDS | 35.0% |
| AAAAAGAGACCCCTTGAAAA+GGG | - | chr4_3:56531486-56531505 | Msa0649800:CDS | 35.0% | |
| !! | CTGCATCACATTTGATTTTG+AGG | + | chr4_3:56531605-56531624 | None:intergenic | 35.0% |
| AAATGTGATGCAGTAGTTGT+TGG | - | chr4_3:56531612-56531631 | Msa0649800:CDS | 35.0% | |
| !! | TCTCTAGAACAATCACTTTG+TGG | + | chr4_3:56531686-56531705 | None:intergenic | 35.0% |
| TCATATTGTTGGTCCATTGA+AGG | + | chr4_3:56531753-56531772 | None:intergenic | 35.0% | |
| GACCAACAATATGAAAATGG+AGG | - | chr4_3:56531759-56531778 | Msa0649800:CDS | 35.0% | |
| !!! | ATTTTTGCTGGTTCAACAGT+AGG | - | chr4_3:56531813-56531832 | Msa0649800:CDS | 35.0% |
| TACTCTAAGCTTTCAAAGAG+GGG | + | chr4_3:56531921-56531940 | None:intergenic | 35.0% | |
| GATACTCTAAGCTTTCAAAG+AGG | + | chr4_3:56531923-56531942 | None:intergenic | 35.0% | |
| ! | CTTAGAGTATCTATCTGCTA+TGG | - | chr4_3:56531932-56531951 | Msa0649800:CDS | 35.0% |
| TATTGTGGTTCATGTGGTTA+TGG | - | chr4_3:56532089-56532108 | Msa0649800:CDS | 35.0% | |
| CTTGTAGATGCTGTTGAAAA+AGG | - | chr4_3:56532152-56532171 | Msa0649800:CDS | 35.0% | |
| ! | GACTCTACTGTTTAAAGTCT+TGG | + | chr4_3:56532279-56532298 | None:intergenic | 35.0% |
| CACAATGAAGCTACAAATTG+AGG | - | chr4_3:56532298-56532317 | Msa0649800:CDS | 35.0% | |
| CCGAAAAATCAGTGATAACT+TGG | + | chr4_3:56532538-56532557 | None:intergenic | 35.0% | |
| CTAGTTACATGTTTGGTACA+CGG | - | chr4_3:56532733-56532752 | Msa0649800:intron | 35.0% | |
| !! | TATGATGATGGTCCAAGTAA+TGG | + | chr4_3:56532993-56533012 | None:intergenic | 35.0% |
| TCAATATATCCATGGGAATC+AGG | - | chr4_3:56533017-56533036 | Msa0649800:intron | 35.0% | |
| ! | GTGATTAAATGTGCTGTTCT+TGG | + | chr4_3:56533074-56533093 | None:intergenic | 35.0% |
| AAGTGGACAAGTAAAAACTG+AGG | - | chr4_3:56533112-56533131 | Msa0649800:intron | 35.0% | |
| AGTGGACAAGTAAAAACTGA+GGG | - | chr4_3:56533113-56533132 | Msa0649800:intron | 35.0% | |
| TAATGAGAACACTAGCGAAA+AGG | - | chr4_3:56533271-56533290 | Msa0649800:intron | 35.0% | |
| GATAGTGTTTATCCAATGGA+AGG | - | chr4_3:56533311-56533330 | Msa0649800:intron | 35.0% | |
| GTATACTTCTGCTCATCAAA+TGG | - | chr4_3:56533364-56533383 | Msa0649800:intron | 35.0% | |
| ATACTTCTGCTCATCAAATG+GGG | - | chr4_3:56533366-56533385 | Msa0649800:intron | 35.0% | |
| TAGAATGGGAGTGAATGAAA+AGG | - | chr4_3:56533394-56533413 | Msa0649800:intron | 35.0% | |
| TTGATGAAAATGGTGAGAGT+TGG | - | chr4_3:56533426-56533445 | Msa0649800:intron | 35.0% | |
| TGATGAAAATGGTGAGAGTT+GGG | - | chr4_3:56533427-56533446 | Msa0649800:intron | 35.0% | |
| GTTGACTGAATAGTGATCAT+AGG | + | chr4_3:56533512-56533531 | None:intergenic | 35.0% | |
| GTTTGTCATCCATTGTTGAG+TGG | - | chr4_3:56529639-56529658 | Msa0649800:three_prime_UTR | 40.0% | |
| GTCACTAACAAGCATATGTG+AGG | - | chr4_3:56529713-56529732 | Msa0649800:intron | 40.0% | |
| ATATATACCTCGTCAGGGAT+TGG | + | chr4_3:56529852-56529871 | None:intergenic | 40.0% | |
| CACACATATATACCTCGTCA+GGG | + | chr4_3:56529857-56529876 | None:intergenic | 40.0% | |
| ACACACATATATACCTCGTC+AGG | + | chr4_3:56529858-56529877 | None:intergenic | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr4_3:56530168-56530187 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr4_3:56530191-56530210 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | chr4_3:56530194-56530213 | None:intergenic | 40.0% | |
| GATTAGAGTCGATCCGTTTA+GGG | - | chr4_3:56530704-56530723 | Msa0649800:intron | 40.0% | |
| AAAAAGTTGGCGACCCTAAA+CGG | + | chr4_3:56530720-56530739 | None:intergenic | 40.0% | |
| GGCTTATATCAACAAGGTTG+GGG | - | chr4_3:56531080-56531099 | Msa0649800:CDS | 40.0% | |
| !! | TTGGGGACTTTGTTGATTTG+TGG | - | chr4_3:56531097-56531116 | Msa0649800:CDS | 40.0% |
| AAGACAAGCTTGAGAAGTTG+TGG | + | chr4_3:56531156-56531175 | None:intergenic | 40.0% | |
| CAACTTCTCAAGCTTGTCTT+TGG | - | chr4_3:56531156-56531175 | Msa0649800:CDS | 40.0% | |
| TAAGCGAATGCGAGTCTAAA+AGG | + | chr4_3:56531232-56531251 | None:intergenic | 40.0% | |
| !!! | GCCTCTTTGTTTTCTTCTCT+TGG | - | chr4_3:56531266-56531285 | Msa0649800:CDS | 40.0% |
| CCCAAGAGAAGAAAACAAAG+AGG | + | chr4_3:56531270-56531289 | None:intergenic | 40.0% | |
| AAAATGGTGATAATCCGGCA+TGG | - | chr4_3:56531409-56531428 | Msa0649800:CDS | 40.0% | |
| TGTTGATACCTCATATCCGA+TGG | + | chr4_3:56531439-56531458 | None:intergenic | 40.0% | |
| !! | CTTTTCAAGGGGTCTCTTTT+TGG | + | chr4_3:56531487-56531506 | None:intergenic | 40.0% |
| CAAAAAGAGACCCCTTGAAA+AGG | - | chr4_3:56531485-56531504 | Msa0649800:CDS | 40.0% | |
| TTGAGTCAAGTGTGACATTG+AGG | + | chr4_3:56531572-56531591 | None:intergenic | 40.0% | |
| ATCACTAGAAGGTCCTTCAA+TGG | - | chr4_3:56531737-56531756 | Msa0649800:CDS | 40.0% | |
| GAAACTGTGTGTGAGAGAAT+TGG | - | chr4_3:56531954-56531973 | Msa0649800:intron | 40.0% | |
| !! | AGAAAAGGGTGCCAAAATCT+TGG | - | chr4_3:56532023-56532042 | Msa0649800:intron | 40.0% |
| TATGTGCCAAGAAATTCACC+AGG | - | chr4_3:56532059-56532078 | Msa0649800:intron | 40.0% | |
| ATGTGCCAAGAAATTCACCA+GGG | - | chr4_3:56532060-56532079 | Msa0649800:intron | 40.0% | |
| TGATTCCCTGGTGAATTTCT+TGG | + | chr4_3:56532068-56532087 | None:intergenic | 40.0% | |
| TCACCAGGGAATCATTATTG+TGG | - | chr4_3:56532074-56532093 | Msa0649800:CDS | 40.0% | |
| GAACCACAATAATGATTCCC+TGG | + | chr4_3:56532080-56532099 | None:intergenic | 40.0% | |
| TGTGGTTATGGTTGTCCAAA+AGG | - | chr4_3:56532101-56532120 | Msa0649800:CDS | 40.0% | |
| TGTCCAAAAGGAGAGAAACA+AGG | - | chr4_3:56532113-56532132 | Msa0649800:CDS | 40.0% | |
| GTCCAAAAGGAGAGAAACAA+GGG | - | chr4_3:56532114-56532133 | Msa0649800:CDS | 40.0% | |
| AACAAGGGACTCAAGTTACA+TGG | - | chr4_3:56532129-56532148 | Msa0649800:CDS | 40.0% | |
| !! | AAAGGTGCTGTGATCATAAC+AGG | - | chr4_3:56532170-56532189 | Msa0649800:CDS | 40.0% |
| ! | GAAGAAATGTTTGGGAGTGT+TGG | - | chr4_3:56532253-56532272 | Msa0649800:CDS | 40.0% |
| ! | ACCTGCAGAAATTGTCACTT+TGG | + | chr4_3:56532324-56532343 | None:intergenic | 40.0% |
| AAAGTGACAATTTCTGCAGG+TGG | - | chr4_3:56532323-56532342 | Msa0649800:CDS | 40.0% | |
| AAGTGACAATTTCTGCAGGT+GGG | - | chr4_3:56532324-56532343 | Msa0649800:CDS | 40.0% | |
| CCACTAGAGATCATTAATGG+TGG | + | chr4_3:56532362-56532381 | None:intergenic | 40.0% | |
| CCACCATTAATGATCTCTAG+TGG | - | chr4_3:56532359-56532378 | Msa0649800:intron | 40.0% | |
| TCCATCCTGTACTAATGACA+TGG | - | chr4_3:56532417-56532436 | Msa0649800:intron | 40.0% | |
| CCATCCTGTACTAATGACAT+GGG | - | chr4_3:56532418-56532437 | Msa0649800:intron | 40.0% | |
| CATCCTGTACTAATGACATG+GGG | - | chr4_3:56532419-56532438 | Msa0649800:intron | 40.0% | |
| TATCCCCATGTCATTAGTAC+AGG | + | chr4_3:56532425-56532444 | None:intergenic | 40.0% | |
| ! | ACCTGGCTAGTAACTTTTAG+TGG | - | chr4_3:56532578-56532597 | Msa0649800:intron | 40.0% |
| ! | CCTGGCTAGTAACTTTTAGT+GGG | - | chr4_3:56532579-56532598 | Msa0649800:intron | 40.0% |
| ! | CTGGCTAGTAACTTTTAGTG+GGG | - | chr4_3:56532580-56532599 | Msa0649800:intron | 40.0% |
| TGTACGAGTGGAAATGAACT+TGG | + | chr4_3:56532662-56532681 | None:intergenic | 40.0% | |
| ATGTTTGGTACACGGTGTAT+TGG | - | chr4_3:56532741-56532760 | Msa0649800:intron | 40.0% | |
| ATTGGAGTGATATTCGAGTG+AGG | - | chr4_3:56532759-56532778 | Msa0649800:intron | 40.0% | |
| TTGGAGTGATATTCGAGTGA+GGG | - | chr4_3:56532760-56532779 | Msa0649800:intron | 40.0% | |
| GTTTGATATCGCGGTGAATT+TGG | + | chr4_3:56532797-56532816 | None:intergenic | 40.0% | |
| ACAGGTAAAATCTATGAGGG+AGG | - | chr4_3:56532888-56532907 | Msa0649800:intron | 40.0% | |
| GATAGAGAGAATATGAGAGC+TGG | - | chr4_3:56533164-56533183 | Msa0649800:intron | 40.0% | |
| ! | ATGAGAGCTGGTTTACAACA+AGG | - | chr4_3:56533176-56533195 | Msa0649800:intron | 40.0% |
| CTGAGAATTCTAATAGCAGC+AGG | - | chr4_3:56533200-56533219 | Msa0649800:intron | 40.0% | |
| CATTGTCACCATGTGAGAAT+TGG | - | chr4_3:56533336-56533355 | Msa0649800:intron | 40.0% | |
| TCAAATGGGGAGTTGTAGAA+TGG | - | chr4_3:56533379-56533398 | Msa0649800:intron | 40.0% | |
| CAAATGGGGAGTTGTAGAAT+GGG | - | chr4_3:56533380-56533399 | Msa0649800:intron | 40.0% | |
| ATGGGAGTGAATGAAAAGGA+AGG | - | chr4_3:56533398-56533417 | Msa0649800:intron | 40.0% | |
| !! | GAAGGTGCTGTTGATGAAAA+TGG | - | chr4_3:56533416-56533435 | Msa0649800:intron | 40.0% |
| TCTCTCACACCACTCAACAA+TGG | + | chr4_3:56529651-56529670 | None:intergenic | 45.0% | |
| TGTGTTGCCTTCATTGCCAA+TGG | - | chr4_3:56529737-56529756 | Msa0649800:three_prime_UTR | 45.0% | |
| GCATCATCCATTGGCAATGA+AGG | + | chr4_3:56529747-56529766 | None:intergenic | 45.0% | |
| TATGTATCCAATCCCTGACG+AGG | - | chr4_3:56529842-56529861 | Msa0649800:CDS | 45.0% | |
| CGTAGCAGTTTCTTGCATTC+AGG | + | chr4_3:56529950-56529969 | None:intergenic | 45.0% | |
| AAACTGCTACGATGTGCAAG+TGG | - | chr4_3:56529959-56529978 | Msa0649800:CDS | 45.0% | |
| AACTGCTACGATGTGCAAGT+GGG | - | chr4_3:56529960-56529979 | Msa0649800:CDS | 45.0% | |
| ACCCACAATTAGGTTCCATG+TGG | - | chr4_3:56529987-56530006 | Msa0649800:CDS | 45.0% | |
| GCCACATGGAACCTAATTGT+GGG | + | chr4_3:56529991-56530010 | None:intergenic | 45.0% | |
| AGCCACATGGAACCTAATTG+TGG | + | chr4_3:56529992-56530011 | None:intergenic | 45.0% | |
| TACGCACCAACTCGACTAAT+AGG | - | chr4_3:56530061-56530080 | Msa0649800:CDS | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr4_3:56530174-56530193 | None:intergenic | 45.0% |
| GGCAAATAGTGCGTTGTGAT+TGG | - | chr4_3:56530202-56530221 | Msa0649800:CDS | 45.0% | |
| GGATTAGAGTCGATCCGTTT+AGG | - | chr4_3:56530703-56530722 | Msa0649800:intron | 45.0% | |
| CTAACATCTCAGCAACCTGT+TGG | + | chr4_3:56531012-56531031 | None:intergenic | 45.0% | |
| GCTGAGATGTTAGTGAAGAG+TGG | - | chr4_3:56531019-56531038 | Msa0649800:CDS | 45.0% | |
| ATGCGAGTCTAAAAGGAGTG+AGG | + | chr4_3:56531225-56531244 | None:intergenic | 45.0% | |
| ATGGAAAGCCATCGGATATG+AGG | - | chr4_3:56531428-56531447 | Msa0649800:CDS | 45.0% | |
| !!! | GGGTCTCTTTTTGGTGTCAT+TGG | + | chr4_3:56531478-56531497 | None:intergenic | 45.0% |
| !! | GATGCAGTAGTTGTTGGTTC+TGG | - | chr4_3:56531618-56531637 | Msa0649800:CDS | 45.0% |
| GCTTCTGTCCTTTCAAATGC+AGG | - | chr4_3:56531660-56531679 | Msa0649800:CDS | 45.0% | |
| CTTTGTGGCCTGCATTTGAA+AGG | + | chr4_3:56531671-56531690 | None:intergenic | 45.0% | |
| !! | TTTGCTGGTTCAACAGTAGG+TGG | - | chr4_3:56531816-56531835 | Msa0649800:CDS | 45.0% |
| GTGGTGGTTCAGCTGTTAAT+TGG | - | chr4_3:56531835-56531854 | Msa0649800:CDS | 45.0% | |
| !! | GTCCCTTGTTTCTCTCCTTT+TGG | + | chr4_3:56532119-56532138 | None:intergenic | 45.0% |
| GCCAAAGTGACAATTTCTGC+AGG | - | chr4_3:56532320-56532339 | Msa0649800:CDS | 45.0% | |
| AGTGACAATTTCTGCAGGTG+GGG | - | chr4_3:56532325-56532344 | Msa0649800:intron | 45.0% | |
| CCCATGTCATTAGTACAGGA+TGG | + | chr4_3:56532421-56532440 | None:intergenic | 45.0% | |
| AGTAATCTCGTCACAGAACC+TGG | - | chr4_3:56532561-56532580 | Msa0649800:intron | 45.0% | |
| CCCACTAAAAGTTACTAGCC+AGG | + | chr4_3:56532582-56532601 | None:intergenic | 45.0% | |
| ! | AGTTTGAGACTTGCGAATGG+TGG | + | chr4_3:56532619-56532638 | None:intergenic | 45.0% |
| ! | TCGAGTTTGAGACTTGCGAA+TGG | + | chr4_3:56532622-56532641 | None:intergenic | 45.0% |
| TGGAGTGATATTCGAGTGAG+GGG | - | chr4_3:56532761-56532780 | Msa0649800:intron | 45.0% | |
| AAGTCAAGTCCTGATTCCCA+TGG | + | chr4_3:56533029-56533048 | None:intergenic | 45.0% | |
| GTAGGAACACACAGAAGTGA+TGG | - | chr4_3:56533233-56533252 | Msa0649800:intron | 45.0% | |
| GGATTAACACCAACAGCAGT+TGG | + | chr4_3:56533491-56533510 | None:intergenic | 45.0% | |
| !!! | TTTAATTTTTATAATCATAT+TGG | + | chr4_3:56530374-56530393 | None:intergenic | 5.0% |
| ATGTGGCTGCGTTGTGCATT+CGG | - | chr4_3:56530004-56530023 | Msa0649800:CDS | 50.0% | |
| ! | CGTTGTGCATTCGGTGAAGT+TGG | - | chr4_3:56530013-56530032 | Msa0649800:CDS | 50.0% |
| AGCCACACCTCCTTGAATTG+TGG | - | chr4_3:56530181-56530200 | Msa0649800:CDS | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr4_3:56530186-56530205 | None:intergenic | 50.0% | |
| AATCCGGCATGGAAAGCCAT+CGG | - | chr4_3:56531420-56531439 | Msa0649800:CDS | 50.0% | |
| TATCCGATGGCTTTCCATGC+CGG | + | chr4_3:56531426-56531445 | None:intergenic | 50.0% | |
| !! | GTAGTTGTTGGTTCTGGCTG+TGG | - | chr4_3:56531624-56531643 | Msa0649800:CDS | 50.0% |
| GAGACTTGCGAATGGTGGTT+GGG | + | chr4_3:56532614-56532633 | None:intergenic | 50.0% | |
| TGAGACTTGCGAATGGTGGT+TGG | + | chr4_3:56532615-56532634 | None:intergenic | 50.0% | |
| GGTGACAATGCTCCTTCCAT+TGG | + | chr4_3:56533326-56533345 | None:intergenic | 50.0% | |
| GTGAGAGTTGGGAAGCTGAA+GGG | - | chr4_3:56533438-56533457 | Msa0649800:intron | 50.0% | |
| AGTGTGCTTCCAACTGCTGT+TGG | - | chr4_3:56533479-56533498 | Msa0649800:intron | 50.0% | |
| TGCTACGATGTGCAAGTGGG+TGG | - | chr4_3:56529963-56529982 | Msa0649800:CDS | 55.0% | |
| GCTACGATGTGCAAGTGGGT+GGG | - | chr4_3:56529964-56529983 | Msa0649800:CDS | 55.0% | |
| AGTGGGTGGGACCCACAATT+AGG | - | chr4_3:56529977-56529996 | Msa0649800:CDS | 55.0% | |
| GAATGCACAACGCAGCCACA+TGG | + | chr4_3:56530005-56530024 | None:intergenic | 55.0% | |
| TGCAGAGGGCTCTCAAGCTT+AGG | - | chr4_3:56531197-56531216 | Msa0649800:CDS | 55.0% | |
| CGAAATGGCACGTTGCAGCA+AGG | + | chr4_3:56531311-56531330 | None:intergenic | 55.0% | |
| !! | GTTGTTGGTTCTGGCTGTGG+AGG | - | chr4_3:56531627-56531646 | Msa0649800:CDS | 55.0% |
| ! | GCTGGTTCAACAGTAGGTGG+TGG | - | chr4_3:56531819-56531838 | Msa0649800:CDS | 55.0% |
| CTTGCGAATGGTGGTTGGGA+GGG | + | chr4_3:56532610-56532629 | None:intergenic | 55.0% | |
| ACTTGCGAATGGTGGTTGGG+AGG | + | chr4_3:56532611-56532630 | None:intergenic | 55.0% | |
| GCAGCAGGAGCTGTTGAAGT+AGG | - | chr4_3:56533215-56533234 | Msa0649800:intron | 55.0% | |
| GGTGAGAGTTGGGAAGCTGA+AGG | - | chr4_3:56533437-56533456 | Msa0649800:intron | 55.0% | |
| !! | GTTGGTTCTGGCTGTGGAGG+AGG | - | chr4_3:56531630-56531649 | Msa0649800:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 56529505 | 56533854 | 56529505 | ID=Msa0649800;Name=Msa0649800 |
| chr4_3 | mRNA | 56529505 | 56533854 | 56529505 | ID=Msa0649800-mRNA-1;Parent=Msa0649800;Name=Msa0649800-mRNA-1;_AED=0.11;_eAED=0.11;_QI=98|1|1|1|0.75|0.6|5|226|770 |
| chr4_3 | exon | 56529505 | 56529699 | 56529505 | ID=Msa0649800-mRNA-1:exon:14733;Parent=Msa0649800-mRNA-1 |
| chr4_3 | exon | 56529730 | 56530467 | 56529730 | ID=Msa0649800-mRNA-1:exon:14732;Parent=Msa0649800-mRNA-1 |
| chr4_3 | exon | 56530886 | 56531957 | 56530886 | ID=Msa0649800-mRNA-1:exon:14731;Parent=Msa0649800-mRNA-1 |
| chr4_3 | exon | 56532071 | 56532343 | 56532071 | ID=Msa0649800-mRNA-1:exon:14730;Parent=Msa0649800-mRNA-1 |
| chr4_3 | exon | 56533496 | 56533854 | 56533496 | ID=Msa0649800-mRNA-1:exon:14729;Parent=Msa0649800-mRNA-1 |
| chr4_3 | five_prime_UTR | 56533757 | 56533854 | 56533757 | ID=Msa0649800-mRNA-1:five_prime_utr;Parent=Msa0649800-mRNA-1 |
| chr4_3 | CDS | 56533496 | 56533756 | 56533496 | ID=Msa0649800-mRNA-1:cds;Parent=Msa0649800-mRNA-1 |
| chr4_3 | CDS | 56532071 | 56532343 | 56532071 | ID=Msa0649800-mRNA-1:cds;Parent=Msa0649800-mRNA-1 |
| chr4_3 | CDS | 56530886 | 56531957 | 56530886 | ID=Msa0649800-mRNA-1:cds;Parent=Msa0649800-mRNA-1 |
| chr4_3 | CDS | 56529761 | 56530467 | 56529761 | ID=Msa0649800-mRNA-1:cds;Parent=Msa0649800-mRNA-1 |
| chr4_3 | three_prime_UTR | 56529730 | 56529760 | 56529730 | ID=Msa0649800-mRNA-1:three_prime_utr;Parent=Msa0649800-mRNA-1 |
| chr4_3 | three_prime_UTR | 56529505 | 56529699 | 56529505 | ID=Msa0649800-mRNA-1:three_prime_utr;Parent=Msa0649800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
