Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711650 | XP_003610915.2 | 84.928 | 345 | 4 | 2 | 1 | 297 | 1 | 345 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711650 | sp|Q8BVQ5|PPME1_MOUSE | 37.240 | 384 | 138 | 9 | 3 | 288 | 7 | 385 | 2.55e-70 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711650 | G7K7W8 | 84.928 | 345 | 4 | 2 | 1 | 297 | 1 | 345 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0711650 | Msa0830660 | 0.833990 | 3.882467e-56 | -8.615850e-47 |
| Msa0711650 | Msa0842140 | 0.820045 | 8.439471e-53 | -8.615850e-47 |
| Msa0711650 | Msa0982190 | 0.803197 | 3.910648e-49 | -8.615850e-47 |
| Msa0711650 | Msa0993190 | 0.805188 | 1.506304e-49 | -8.615850e-47 |
| Msa0711650 | Msa1129300 | -0.821449 | 4.013347e-53 | -8.615850e-47 |
| Msa0711650 | Msa1228040 | 0.800207 | 1.605796e-48 | -8.615850e-47 |
| Msa0711650 | Msa1258030 | -0.804430 | 2.168196e-49 | -8.615850e-47 |
| Msa0187590 | Msa0711650 | -0.817315 | 3.515583e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711650 | MtrunA17_Chr5g0396141 | 84.928 | 345 | 4 | 2 | 1 | 297 | 1 | 345 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0711650 | AT4G10050.1 | 63.450 | 342 | 74 | 4 | 3 | 293 | 4 | 345 | 2.60e-152 | 430 |
| Msa0711650 | AT4G10050.2 | 71.875 | 256 | 45 | 1 | 65 | 293 | 18 | 273 | 4.01e-133 | 379 |
Find 105 sgRNAs with CRISPR-Local
Find 641 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATGAATGCTTACATATT+TGG | 0.159791 | 5_1:+3551585 | Msa0711650:three_prime_UTR |
| CGACTCCATTAGGGCCTATT+TGG | 0.179803 | 5_1:-3548174 | None:intergenic |
| GAAAGGCTTAATTTAATATT+AGG | 0.190859 | 5_1:+3551749 | Msa0711650:three_prime_UTR |
| CCAGCAGCAGTTGCCGTTCT+TGG | 0.199984 | 5_1:-3551518 | None:intergenic |
| AAACTAACATCATTTGTTTC+TGG | 0.230576 | 5_1:-3543182 | None:intergenic |
| GTTTATCCAACACCTGATTC+AGG | 0.254969 | 5_1:-3551496 | None:intergenic |
| ATATTAGGTTCTAGATTATA+AGG | 0.281583 | 5_1:+3551764 | Msa0711650:three_prime_UTR |
| TGATCGTCGGTGATGTCTTC+GGG | 0.285744 | 5_1:-3542939 | None:intergenic |
| TTTATTGCTCGTAACCAAAT+AGG | 0.289071 | 5_1:+3548160 | Msa0711650:CDS |
| GAAGAAGGTGGTTACTTAGT+TGG | 0.300333 | 5_1:-3543008 | None:intergenic |
| ACACACAGGGCATGCTATTC+AGG | 0.324713 | 5_1:+3548002 | Msa0711650:CDS |
| GGTTTCGAAAAGGCAGGCTT+GGG | 0.333613 | 5_1:-3551474 | None:intergenic |
| ATACATACCACGACTCCATT+AGG | 0.334656 | 5_1:-3548184 | None:intergenic |
| ATGCTTACATATTTGGTAGA+TGG | 0.345199 | 5_1:+3551592 | Msa0711650:three_prime_UTR |
| TGATGTATTGGCTGTTATAA+AGG | 0.347563 | 5_1:+3544345 | Msa0711650:CDS |
| TTATTACCCACAATTAATTT+AGG | 0.359056 | 5_1:+3551660 | Msa0711650:three_prime_UTR |
| AAATCATTGTCAACCTTGGC+TGG | 0.369006 | 5_1:+3545336 | Msa0711650:CDS |
| CCAAGAACGGCAACTGCTGC+TGG | 0.379637 | 5_1:+3551518 | Msa0711650:three_prime_UTR |
| CTTTCATTTGCTGTGTCAAC+GGG | 0.387831 | 5_1:+3544097 | Msa0711650:CDS |
| CATAATAATGCTAGAACTAA+AGG | 0.397985 | 5_1:-3551568 | None:intergenic |
| TTGATCGTCGGTGATGTCTT+CGG | 0.402926 | 5_1:-3542940 | None:intergenic |
| TGGAAAAGACTGAACAATAT+TGG | 0.403174 | 5_1:+3546070 | Msa0711650:CDS |
| AATATGATGATTCGAAGAAA+TGG | 0.403489 | 5_1:+3545886 | Msa0711650:CDS |
| AATAACAACAGCTTCGGAAC+AGG | 0.404928 | 5_1:-3547482 | None:intergenic |
| GCTGTTATAAAGGAATTATA+TGG | 0.414492 | 5_1:+3544355 | Msa0711650:CDS |
| TACTATAATTTCATGTTTCG+TGG | 0.415916 | 5_1:-3542738 | None:intergenic |
| CCGAAGCTGTTGTTATTAGC+AGG | 0.418860 | 5_1:+3547488 | Msa0711650:CDS |
| GTTATATTGTAGGAGTTCTT+CGG | 0.419029 | 5_1:+3543100 | Msa0711650:intron |
| CGTAACCAAATAGGCCCTAA+TGG | 0.420014 | 5_1:+3548169 | Msa0711650:CDS |
| GGGTTTCGAAAAGGCAGGCT+TGG | 0.436641 | 5_1:-3551475 | None:intergenic |
| AGAAATACGCACCGTTGGAT+TGG | 0.446308 | 5_1:+3543123 | Msa0711650:CDS |
| TGTAACAGGTCTCTCACAAT+TGG | 0.451447 | 5_1:+3547943 | Msa0711650:intron |
| TACATACCACGACTCCATTA+GGG | 0.451852 | 5_1:-3548183 | None:intergenic |
| ATTAGCAGGAACAGATAGAT+TGG | 0.456800 | 5_1:+3547502 | Msa0711650:CDS |
| CTGAACAATATTGGAAAGGC+TGG | 0.457718 | 5_1:+3546079 | Msa0711650:CDS |
| CTTGGCTGGGTTGATTGTTG+TGG | 0.462285 | 5_1:+3545350 | Msa0711650:CDS |
| TGACCAACGAGGATAATTGC+TGG | 0.466211 | 5_1:-3544388 | None:intergenic |
| TTGAGGAGCAGAAGCGAAAA+CGG | 0.466304 | 5_1:-3542979 | None:intergenic |
| AAGGCAGGCTTGGGGAGGCC+AGG | 0.476762 | 5_1:-3551465 | None:intergenic |
| GTATAATTAAGGAGAAAGCT+AGG | 0.484847 | 5_1:+3544119 | Msa0711650:CDS |
| AAATACACAAAATTCTCTCT+AGG | 0.485579 | 5_1:-3542763 | None:intergenic |
| TTGCTTGTATGCAGATTGAA+TGG | 0.491842 | 5_1:+3545799 | Msa0711650:intron |
| GATTGTTGTGGATGTTGTAG+AGG | 0.492777 | 5_1:+3545362 | Msa0711650:CDS |
| CGAAACCCTGAATCAGGTGT+TGG | 0.493079 | 5_1:+3551490 | Msa0711650:exon |
| TTTATCCAACACCTGATTCA+GGG | 0.495087 | 5_1:-3551495 | None:intergenic |
| ACAAGAGTTGCAAATTCATC+AGG | 0.495103 | 5_1:-3548130 | None:intergenic |
| AATTTAGGCATCTCATATCA+AGG | 0.496220 | 5_1:+3551675 | Msa0711650:three_prime_UTR |
| GCTTTCATTTGCTGTGTCAA+CGG | 0.504011 | 5_1:+3544096 | Msa0711650:CDS |
| GCGAAAACGGAAGCGGGTTG+TGG | 0.507851 | 5_1:-3542966 | None:intergenic |
| CCTGATTCAGGGTTTCGAAA+AGG | 0.508303 | 5_1:-3551484 | None:intergenic |
| ATCAAGGTACAATGGAAGAA+AGG | 0.509228 | 5_1:+3551732 | Msa0711650:three_prime_UTR |
| CAACTGCTGCTGGGTGATGA+TGG | 0.510069 | 5_1:+3551528 | Msa0711650:three_prime_UTR |
| GACCATGTGCAATGATGTAT+TGG | 0.512442 | 5_1:+3544333 | Msa0711650:intron |
| TGAGATGCCTAAATTAATTG+TGG | 0.515806 | 5_1:-3551667 | None:intergenic |
| TGTGTCAACGGGTATAATTA+AGG | 0.520801 | 5_1:+3544108 | Msa0711650:CDS |
| GAGATGCCTAAATTAATTGT+GGG | 0.528948 | 5_1:-3551666 | None:intergenic |
| TTCGGAGAAATACGCACCGT+TGG | 0.529265 | 5_1:+3543118 | Msa0711650:CDS |
| ATTCAGGGTTTCGAAAAGGC+AGG | 0.532832 | 5_1:-3551480 | None:intergenic |
| TTATGTTTATCGAACAGAGC+TGG | 0.535307 | 5_1:+3546050 | Msa0711650:CDS |
| GCAGAAGCGAAAACGGAAGC+GGG | 0.536038 | 5_1:-3542972 | None:intergenic |
| CAATTATCCTCGTTGGTCAC+AGG | 0.536543 | 5_1:+3544392 | Msa0711650:CDS |
| CCTCCAGCAATTATCCTCGT+TGG | 0.537076 | 5_1:+3544385 | Msa0711650:CDS |
| CAAGAACGGCAACTGCTGCT+GGG | 0.543535 | 5_1:+3551519 | Msa0711650:three_prime_UTR |
| TCGAAAAGGCAGGCTTGGGG+AGG | 0.546492 | 5_1:-3551470 | None:intergenic |
| TACTTAGTTGGAGGACGTTG+AGG | 0.548397 | 5_1:-3542996 | None:intergenic |
| CCTGCTAATAACAACAGCTT+CGG | 0.548805 | 5_1:-3547488 | None:intergenic |
| GAAAGCTAGGGTGGTTGCGA+TGG | 0.548883 | 5_1:+3544132 | Msa0711650:CDS |
| AGCAGAAGCGAAAACGGAAG+CGG | 0.551536 | 5_1:-3542973 | None:intergenic |
| ATGATAGTTGTCAGACACAC+AGG | 0.553607 | 5_1:+3547988 | Msa0711650:CDS |
| CTCACAATTGGTCAAATGCA+AGG | 0.555981 | 5_1:+3547955 | Msa0711650:CDS |
| GAAGGTGGTTACTTAGTTGG+AGG | 0.568541 | 5_1:-3543005 | None:intergenic |
| GCGATGGACTTGAGAGGTCA+TGG | 0.569848 | 5_1:+3544148 | Msa0711650:CDS |
| AAGGAAATCATTGTCAACCT+TGG | 0.570433 | 5_1:+3545332 | Msa0711650:CDS |
| AATCATTGTCAACCTTGGCT+GGG | 0.570477 | 5_1:+3545337 | Msa0711650:CDS |
| ATTGAATGGAGTGTGAGGGC+TGG | 0.573026 | 5_1:+3545813 | Msa0711650:CDS |
| TTTGTTTGAATCGATCTATG+AGG | 0.575527 | 5_1:-3542884 | None:intergenic |
| TTCTAGATTATAAGGTACAA+TGG | 0.579995 | 5_1:+3551772 | Msa0711650:three_prime_UTR |
| TATAATTAAGGAGAAAGCTA+GGG | 0.580788 | 5_1:+3544120 | Msa0711650:CDS |
| AAAACGGAAGCGGGTTGTGG+TGG | 0.588511 | 5_1:-3542963 | None:intergenic |
| AAGACTGAACAATATTGGAA+AGG | 0.599196 | 5_1:+3546075 | Msa0711650:CDS |
| AATTAAGGAGAAAGCTAGGG+TGG | 0.599249 | 5_1:+3544123 | Msa0711650:CDS |
| CATCTCATATCAAGGTACAA+TGG | 0.599868 | 5_1:+3551683 | Msa0711650:three_prime_UTR |
| TCGATTCAAACAAAACGCAA+TGG | 0.601273 | 5_1:+3542893 | Msa0711650:exon |
| GGTGTTGGATAAACCAAGAA+CGG | 0.608439 | 5_1:+3551505 | Msa0711650:three_prime_UTR |
| CAGGAACAGATAGATTGGAC+AGG | 0.610230 | 5_1:+3547507 | Msa0711650:CDS |
| CACAACAATCAACCCAGCCA+AGG | 0.611749 | 5_1:-3545349 | None:intergenic |
| ATAACAACAGCTTCGGAACA+GGG | 0.614518 | 5_1:-3547481 | None:intergenic |
| GTTTGAATCGATCTATGAGG+AGG | 0.615102 | 5_1:-3542881 | None:intergenic |
| ATCCATCATCAAAGCATGGG+GGG | 0.618423 | 5_1:+3545285 | Msa0711650:intron |
| TCCATCATCAAAGCATGGGG+GGG | 0.626873 | 5_1:+3545286 | Msa0711650:intron |
| GTTTCGAAAAGGCAGGCTTG+GGG | 0.636712 | 5_1:-3551473 | None:intergenic |
| TAACAACAGCTTCGGAACAG+GGG | 0.644743 | 5_1:-3547480 | None:intergenic |
| GATCGTCGGTGATGTCTTCG+GGG | 0.656076 | 5_1:-3542938 | None:intergenic |
| GGGTTGTGGTGGTTGATCGT+CGG | 0.667260 | 5_1:-3542952 | None:intergenic |
| AATAGGCCCTAATGGAGTCG+TGG | 0.668041 | 5_1:+3548177 | Msa0711650:CDS |
| TGCAGATTGAATGGAGTGTG+AGG | 0.671060 | 5_1:+3545808 | Msa0711650:intron |
| TGATAGTTGTCAGACACACA+GGG | 0.673323 | 5_1:+3547989 | Msa0711650:CDS |
| AGCCAATACATCATTGCACA+TGG | 0.678025 | 5_1:-3544335 | None:intergenic |
| GTGGTTGCGATGGACTTGAG+AGG | 0.687131 | 5_1:+3544142 | Msa0711650:CDS |
| AAATACACAGACCAATCCAA+CGG | 0.692479 | 5_1:-3543134 | None:intergenic |
| TTGCTGTGCATATTGCTGCA+AGG | 0.693525 | 5_1:+3545313 | Msa0711650:CDS |
| TATCCATCATCAAAGCATGG+GGG | 0.700379 | 5_1:+3545284 | Msa0711650:intron |
| GCAGATTGAATGGAGTGTGA+GGG | 0.705258 | 5_1:+3545809 | Msa0711650:intron |
| CCAACGAGGATAATTGCTGG+AGG | 0.728227 | 5_1:-3544385 | None:intergenic |
| TAAATCACCTGTGACCAACG+AGG | 0.765150 | 5_1:-3544399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTAAAATTTTAATT+TGG | - | chr5_1:3542709-3542728 | None:intergenic | 0.0% |
| !!! | TTATTTTACTTATTATATTC+AGG | + | chr5_1:3543271-3543290 | Msa0711650:intron | 10.0% |
| !!! | ATTTTTTTTTTTTTTTTGAG+AGG | + | chr5_1:3546482-3546501 | Msa0711650:intron | 10.0% |
| !!! | TCTATTATACTTTTTTTTTA+GGG | - | chr5_1:3546597-3546616 | None:intergenic | 10.0% |
| !!! | TTCTATTATACTTTTTTTTT+AGG | - | chr5_1:3546598-3546617 | None:intergenic | 10.0% |
| !! | ACTTTAATAAAGTATAAATA+AGG | + | chr5_1:3546920-3546939 | Msa0711650:intron | 10.0% |
| !!! | CTAATTTTTGTTTTTTTTAT+TGG | + | chr5_1:3547911-3547930 | Msa0711650:intron | 10.0% |
| !!! | TTTTTAATTATAACAAACTT+AGG | + | chr5_1:3551820-3551839 | Msa0711650:three_prime_UTR | 10.0% |
| !!! | TTTTAATTATAACAAACTTA+GGG | + | chr5_1:3551821-3551840 | Msa0711650:three_prime_UTR | 10.0% |
| !!! | AGAATTTTGTGTATTTTAAA+AGG | + | chr5_1:3542770-3542789 | Msa0711650:five_prime_UTR | 15.0% |
| !!! | TTTTTCATTTGTTATATTGT+AGG | + | chr5_1:3543090-3543109 | Msa0711650:intron | 15.0% |
| !!! | AATAGTCATAATATTGATTT+TGG | - | chr5_1:3543212-3543231 | None:intergenic | 15.0% |
| !! | ATATTTAAAGATAAGAATGA+AGG | + | chr5_1:3543679-3543698 | Msa0711650:intron | 15.0% |
| !! | TGATTAATTATTTACCTATT+CGG | - | chr5_1:3543767-3543786 | None:intergenic | 15.0% |
| !! | TGTAATAACTAAAAATCAAA+TGG | - | chr5_1:3543942-3543961 | None:intergenic | 15.0% |
| !! | AACATATATTATGTTTAATG+TGG | + | chr5_1:3545037-3545056 | Msa0711650:intron | 15.0% |
| !! | TTTATTCCTATAGAAATATT+TGG | + | chr5_1:3545172-3545191 | Msa0711650:intron | 15.0% |
| !! | TAGTTAGATATTTAAGAAAA+AGG | + | chr5_1:3545679-3545698 | Msa0711650:intron | 15.0% |
| !!! | CTTTTGACATTATTATTATT+AGG | + | chr5_1:3546158-3546177 | Msa0711650:intron | 15.0% |
| !!! | AAATTGCATTTTTTTTGTTA+GGG | - | chr5_1:3546234-3546253 | None:intergenic | 15.0% |
| !!! | AAAATTGCATTTTTTTTGTT+AGG | - | chr5_1:3546235-3546254 | None:intergenic | 15.0% |
| !! | TAATAAAGTATAAATAAGGA+TGG | + | chr5_1:3546924-3546943 | Msa0711650:intron | 15.0% |
| !! | ATAAATATGAAAATGTTTGA+TGG | - | chr5_1:3547278-3547297 | None:intergenic | 15.0% |
| !!! | ACATTATATATTTTTCATAC+AGG | + | chr5_1:3547426-3547445 | Msa0711650:intron | 15.0% |
| !! | TATTCTGTCTTAATATATTT+AGG | + | chr5_1:3548099-3548118 | Msa0711650:intron | 15.0% |
| !! | AAAACTAAAGTAAAAAGATA+AGG | - | chr5_1:3549558-3549577 | None:intergenic | 15.0% |
| !!! | TTATCTTTTTACTTTAGTTT+TGG | + | chr5_1:3549557-3549576 | Msa0711650:intron | 15.0% |
| !!! | ATCTAAACATTTTTTTTACT+AGG | + | chr5_1:3550553-3550572 | Msa0711650:intron | 15.0% |
| !! | AAAATACAAAAATATTGTGT+TGG | - | chr5_1:3551216-3551235 | None:intergenic | 15.0% |
| !! | TGATAAGAAAAACAAAAAAT+TGG | - | chr5_1:3551716-3551735 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTTTTTCTTATCA+AGG | + | chr5_1:3551716-3551735 | Msa0711650:three_prime_UTR | 15.0% |
| !!! | GCTAATGCATTTTTAATTAA+TGG | + | chr5_1:3543368-3543387 | Msa0711650:intron | 20.0% |
| !! | AATCAATTATAACTGTGATA+TGG | + | chr5_1:3543438-3543457 | Msa0711650:intron | 20.0% |
| !! | ATAAACAATGTAGTTTACTT+AGG | - | chr5_1:3544232-3544251 | None:intergenic | 20.0% |
| !!! | TTATCTTATTTTATTGTCTC+CGG | + | chr5_1:3544434-3544453 | Msa0711650:intron | 20.0% |
| !! | TATTTATCATCATCTAATCA+AGG | - | chr5_1:3544591-3544610 | None:intergenic | 20.0% |
| !!! | TCTTTATTTAGTAGAATTGA+AGG | + | chr5_1:3544642-3544661 | Msa0711650:intron | 20.0% |
| !!! | CTTTATTTAGTAGAATTGAA+GGG | + | chr5_1:3544643-3544662 | Msa0711650:intron | 20.0% |
| !! | TTTATTTAGTAGAATTGAAG+GGG | + | chr5_1:3544644-3544663 | Msa0711650:intron | 20.0% |
| !!! | AAGGAAATTTAATTTTGTTC+TGG | + | chr5_1:3544813-3544832 | Msa0711650:intron | 20.0% |
| !! | AAAGTAAAAGGGAAAAATAA+AGG | - | chr5_1:3545137-3545156 | None:intergenic | 20.0% |
| !! | ATTGAAGAAAGAAAGTAAAA+GGG | - | chr5_1:3545148-3545167 | None:intergenic | 20.0% |
| !!! | ATTTTCTTGACATTTTTTTG+TGG | + | chr5_1:3545655-3545674 | Msa0711650:intron | 20.0% |
| !!! | AATTGCATTTTTTTTGTTAG+GGG | - | chr5_1:3546233-3546252 | None:intergenic | 20.0% |
| !!! | AACTTTTTTGTAAAGATAAG+GGG | - | chr5_1:3546301-3546320 | None:intergenic | 20.0% |
| !!! | CAACTTTTTTGTAAAGATAA+GGG | - | chr5_1:3546302-3546321 | None:intergenic | 20.0% |
| !! | AATCGTATGATATAATGATA+AGG | - | chr5_1:3546436-3546455 | None:intergenic | 20.0% |
| !! | TATCATTATATCATACGATT+AGG | + | chr5_1:3546436-3546455 | Msa0711650:intron | 20.0% |
| !!! | TTAGGATATGTTGAATATTT+TGG | + | chr5_1:3546454-3546473 | Msa0711650:intron | 20.0% |
| !!! | TTTTTTGATGAACCAAAATA+AGG | + | chr5_1:3546955-3546974 | Msa0711650:intron | 20.0% |
| !! | GCATTCATTATATTGTATTA+TGG | + | chr5_1:3548049-3548068 | Msa0711650:intron | 20.0% |
| !!! | CCACTATTTTTAACTAAATA+TGG | - | chr5_1:3548281-3548300 | None:intergenic | 20.0% |
| !! | CCATATTTAGTTAAAAATAG+TGG | + | chr5_1:3548278-3548297 | Msa0711650:intron | 20.0% |
| !!! | TTTTTTCAATTAAGATGACA+TGG | + | chr5_1:3548487-3548506 | Msa0711650:intron | 20.0% |
| !!! | TTTTTCAATTAAGATGACAT+GGG | + | chr5_1:3548488-3548507 | Msa0711650:intron | 20.0% |
| !!! | TAAAAAGTATCCATATAGAA+TGG | - | chr5_1:3548729-3548748 | None:intergenic | 20.0% |
| !! | TAATCTTAAGCATTTCAATT+TGG | + | chr5_1:3548754-3548773 | Msa0711650:intron | 20.0% |
| !! | GAAAAATTGGTAGAAAATAT+AGG | + | chr5_1:3550153-3550172 | Msa0711650:intron | 20.0% |
| !!! | AAAATGTTTAGATTTTTGCT+GGG | - | chr5_1:3550546-3550565 | None:intergenic | 20.0% |
| !!! | AAAAATGTTTAGATTTTTGC+TGG | - | chr5_1:3550547-3550566 | None:intergenic | 20.0% |
| !!! | TAAACATTTTTTTTACTAGG+TGG | + | chr5_1:3550556-3550575 | Msa0711650:intron | 20.0% |
| !!! | TAACTTATGATAAGATTTTG+AGG | - | chr5_1:3550607-3550626 | None:intergenic | 20.0% |
| !! | TCTATCTAAATTATTCAACA+TGG | - | chr5_1:3551303-3551322 | None:intergenic | 20.0% |
| !!! | AATTTGATTTTCACATTACT+TGG | + | chr5_1:3551401-3551420 | Msa0711650:intron | 20.0% |
| !! | ATTATGAATGCTTACATATT+TGG | + | chr5_1:3551585-3551604 | Msa0711650:three_prime_UTR | 20.0% |
| !! | TTATTACCCACAATTAATTT+AGG | + | chr5_1:3551660-3551679 | Msa0711650:three_prime_UTR | 20.0% |
| !! | GAAAGGCTTAATTTAATATT+AGG | + | chr5_1:3551749-3551768 | Msa0711650:three_prime_UTR | 20.0% |
| !!! | ATATTAGGTTCTAGATTATA+AGG | + | chr5_1:3551764-3551783 | Msa0711650:three_prime_UTR | 20.0% |
| ! | TACTATAATTTCATGTTTCG+TGG | - | chr5_1:3542741-3542760 | None:intergenic | 25.0% |
| ! | AAATACACAAAATTCTCTCT+AGG | - | chr5_1:3542766-3542785 | None:intergenic | 25.0% |
| ! | AAACTAACATCATTTGTTTC+TGG | - | chr5_1:3543185-3543204 | None:intergenic | 25.0% |
| ! | CTAAAAATCAAATGGCAATT+TGG | - | chr5_1:3543934-3543953 | None:intergenic | 25.0% |
| ! | TATAATTAAGGAGAAAGCTA+GGG | + | chr5_1:3544120-3544139 | Msa0711650:CDS | 25.0% |
| ! | GCTGTTATAAAGGAATTATA+TGG | + | chr5_1:3544355-3544374 | Msa0711650:CDS | 25.0% |
| !! | ATTCAAGTTAGTCGATAAAA+TGG | - | chr5_1:3544480-3544499 | None:intergenic | 25.0% |
| ! | TTGGTCACTTAAAGTTAAAT+TGG | + | chr5_1:3544514-3544533 | Msa0711650:intron | 25.0% |
| ! | ATGATGATAAATACAACTCT+TGG | + | chr5_1:3544598-3544617 | Msa0711650:intron | 25.0% |
| ! | TTATTTAGTAGAATTGAAGG+GGG | + | chr5_1:3544645-3544664 | Msa0711650:intron | 25.0% |
| !!! | GGTGTTTTAGTTATATTTTG+TGG | + | chr5_1:3544679-3544698 | Msa0711650:intron | 25.0% |
| !! | TCTGGTTATTACAAAGATTT+TGG | + | chr5_1:3544831-3544850 | Msa0711650:intron | 25.0% |
| !! | CTGGTTATTACAAAGATTTT+GGG | + | chr5_1:3544832-3544851 | Msa0711650:intron | 25.0% |
| !! | TGGTTATTACAAAGATTTTG+GGG | + | chr5_1:3544833-3544852 | Msa0711650:intron | 25.0% |
| ! | CATTGAAGAAAGAAAGTAAA+AGG | - | chr5_1:3545149-3545168 | None:intergenic | 25.0% |
| ! | AATGCAAATGAAAACAGATA+AGG | - | chr5_1:3545582-3545601 | None:intergenic | 25.0% |
| !!! | ATTTTTAGTTATCCGATACA+TGG | + | chr5_1:3545599-3545618 | Msa0711650:intron | 25.0% |
| ! | AATTAGGATGACATAGAAAA+AGG | - | chr5_1:3545705-3545724 | None:intergenic | 25.0% |
| ! | TAAGCAGTGCATAATAAATT+AGG | - | chr5_1:3545721-3545740 | None:intergenic | 25.0% |
| !!! | TTGTTTTGGTGAATTTTGAA+TGG | + | chr5_1:3545768-3545787 | Msa0711650:intron | 25.0% |
| !! | CTTCGAATCATCATATTTTA+TGG | - | chr5_1:3545883-3545902 | None:intergenic | 25.0% |
| ! | AATATGATGATTCGAAGAAA+TGG | + | chr5_1:3545886-3545905 | Msa0711650:CDS | 25.0% |
| !! | AAGGAAAAAGGACTATATTT+TGG | - | chr5_1:3545955-3545974 | None:intergenic | 25.0% |
| !!! | ATTGCATTTTTTTTGTTAGG+GGG | - | chr5_1:3546232-3546251 | None:intergenic | 25.0% |
| !!! | GCAACTTTTTTGTAAAGATA+AGG | - | chr5_1:3546303-3546322 | None:intergenic | 25.0% |
| ! | TTACAAAAAAGTTGCGATTA+TGG | + | chr5_1:3546308-3546327 | Msa0711650:intron | 25.0% |
| !! | TTTTGTGATTCTACAAAGAA+AGG | + | chr5_1:3546634-3546653 | Msa0711650:intron | 25.0% |
| ! | CATTGTATTAAACCCTATAA+CGG | - | chr5_1:3546835-3546854 | None:intergenic | 25.0% |
| ! | TTATAGGGTTTAATACAATG+TGG | + | chr5_1:3546835-3546854 | Msa0711650:intron | 25.0% |
| ! | TATAGGGTTTAATACAATGT+GGG | + | chr5_1:3546836-3546855 | Msa0711650:intron | 25.0% |
| ! | GCGGATCAATAAAATTATAT+TGG | - | chr5_1:3547008-3547027 | None:intergenic | 25.0% |
| !! | AATTATAGAGTTGGTCATTT+AGG | - | chr5_1:3547054-3547073 | None:intergenic | 25.0% |
| ! | AATGCTATTCATGAAACAAA+TGG | + | chr5_1:3547100-3547119 | Msa0711650:intron | 25.0% |
| ! | ATTCATATCCATGCAATATT+AGG | - | chr5_1:3547243-3547262 | None:intergenic | 25.0% |
| ! | ATGAAAATGTTTGATGGAAA+GGG | - | chr5_1:3547272-3547291 | None:intergenic | 25.0% |
| ! | TATGAAAATGTTTGATGGAA+AGG | - | chr5_1:3547273-3547292 | None:intergenic | 25.0% |
| !! | TTAGAATCTTTTGCACAATA+AGG | - | chr5_1:3547338-3547357 | None:intergenic | 25.0% |
| !! | TATTTTTCATACAGGTATGA+AGG | + | chr5_1:3547434-3547453 | Msa0711650:intron | 25.0% |
| ! | ATGACAAAAATTTATCTGAG+AGG | - | chr5_1:3547460-3547479 | None:intergenic | 25.0% |
| ! | ATCAATTTCATTAGCTAGAA+TGG | + | chr5_1:3547615-3547634 | Msa0711650:intron | 25.0% |
| ! | TTGGAGATAAGATATTAAGT+TGG | - | chr5_1:3547669-3547688 | None:intergenic | 25.0% |
| ! | CTTTACTGTAATTACAGTAT+TGG | - | chr5_1:3548258-3548277 | None:intergenic | 25.0% |
| ! | AGCCACAATATTCTTATTAT+GGG | - | chr5_1:3548670-3548689 | None:intergenic | 25.0% |
| ! | ACACAAACAAACATATATGT+GGG | + | chr5_1:3548868-3548887 | Msa0711650:intron | 25.0% |
| ! | GTTCTTATAGATTGGAATTA+AGG | - | chr5_1:3549112-3549131 | None:intergenic | 25.0% |
| ! | AATTCCAATCTATAAGAACA+AGG | + | chr5_1:3549113-3549132 | Msa0711650:intron | 25.0% |
| ! | ATTCCAATCTATAAGAACAA+GGG | + | chr5_1:3549114-3549133 | Msa0711650:intron | 25.0% |
| !!! | ACACTTAGTTTTCATTGATT+TGG | + | chr5_1:3549344-3549363 | Msa0711650:intron | 25.0% |
| ! | AGTAAAAAGATAAGGACTTA+GGG | - | chr5_1:3549550-3549569 | None:intergenic | 25.0% |
| ! | AAGTAAAAAGATAAGGACTT+AGG | - | chr5_1:3549551-3549570 | None:intergenic | 25.0% |
| ! | ATATCTAAACTGTGTAACTT+GGG | - | chr5_1:3549820-3549839 | None:intergenic | 25.0% |
| ! | TTACACAGTTTAGATATCTT+GGG | + | chr5_1:3549823-3549842 | Msa0711650:intron | 25.0% |
| !! | TCTACCAATTTTTCTACTAT+AGG | - | chr5_1:3550147-3550166 | None:intergenic | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr5_1:3550335-3550354 | None:intergenic | 25.0% |
| ! | TATCATTAAATACAGTGTTG+AGG | - | chr5_1:3550636-3550655 | None:intergenic | 25.0% |
| !!! | ATAGTGTCATGATTTTTAAG+AGG | - | chr5_1:3550718-3550737 | None:intergenic | 25.0% |
| ! | AATGGAATGTTCTTTACTAT+AGG | - | chr5_1:3550788-3550807 | None:intergenic | 25.0% |
| ! | TCAATAATCTAGTAGAAAGT+TGG | + | chr5_1:3550985-3551004 | Msa0711650:intron | 25.0% |
| ! | TGATCAATAGATATTCTTTG+AGG | + | chr5_1:3551085-3551104 | Msa0711650:intron | 25.0% |
| !! | ATATTCTTTGAGGATATGTT+AGG | + | chr5_1:3551095-3551114 | Msa0711650:intron | 25.0% |
| ! | TTGCTTTAGCAAAAACATAA+TGG | + | chr5_1:3551341-3551360 | Msa0711650:intron | 25.0% |
| ! | CAAATTATTTATACAGCACA+TGG | - | chr5_1:3551368-3551387 | None:intergenic | 25.0% |
| !!! | AAAATTATTTTGCAGATACC+TGG | + | chr5_1:3551447-3551466 | Msa0711650:intron | 25.0% |
| ! | CATAATAATGCTAGAACTAA+AGG | - | chr5_1:3551571-3551590 | None:intergenic | 25.0% |
| !! | TTTTTCTTATCAAGGTACAA+TGG | + | chr5_1:3551724-3551743 | Msa0711650:three_prime_UTR | 25.0% |
| ! | TTCTAGATTATAAGGTACAA+TGG | + | chr5_1:3551772-3551791 | Msa0711650:three_prime_UTR | 25.0% |
| ! | TATAAGGTACAATGGAAAAA+AGG | + | chr5_1:3551780-3551799 | Msa0711650:three_prime_UTR | 25.0% |
| TTTGTTTGAATCGATCTATG+AGG | - | chr5_1:3542887-3542906 | None:intergenic | 30.0% | |
| GTTATATTGTAGGAGTTCTT+CGG | + | chr5_1:3543100-3543119 | Msa0711650:intron | 30.0% | |
| ! | TCAGGTTTTTCATGTTTACA+TGG | + | chr5_1:3543289-3543308 | Msa0711650:intron | 30.0% |
| !! | CCTGTTGTATTTTGTTTACA+CGG | + | chr5_1:3543326-3543345 | Msa0711650:intron | 30.0% |
| TTAGTTTCATGGTTGTAGTT+AGG | - | chr5_1:3543799-3543818 | None:intergenic | 30.0% | |
| AAGCCTGTAATGAAATAATG+TGG | - | chr5_1:3544080-3544099 | None:intergenic | 30.0% | |
| GTATAATTAAGGAGAAAGCT+AGG | + | chr5_1:3544119-3544138 | Msa0711650:CDS | 30.0% | |
| !!! | TGATTTTGACTTATCTGTTG+AGG | + | chr5_1:3544189-3544208 | Msa0711650:CDS | 30.0% |
| !! | TGATGTATTGGCTGTTATAA+AGG | + | chr5_1:3544345-3544364 | Msa0711650:CDS | 30.0% |
| CATGTTCTTGTATGAAAAAC+CGG | - | chr5_1:3544456-3544475 | None:intergenic | 30.0% | |
| TAGTTTCAGTGCATTTAATC+TGG | - | chr5_1:3544554-3544573 | None:intergenic | 30.0% | |
| ! | TAAATACAACTCTTGGTAAC+CGG | + | chr5_1:3544605-3544624 | Msa0711650:intron | 30.0% |
| ! | AAAGACACCAAATTTTTACC+CGG | - | chr5_1:3544627-3544646 | None:intergenic | 30.0% |
| AAGCATCATCTATGCTATAT+TGG | + | chr5_1:3544723-3544742 | Msa0711650:intron | 30.0% | |
| TTGTATGTGATTGCTAAACT+TGG | + | chr5_1:3545005-3545024 | Msa0711650:intron | 30.0% | |
| ! | GGTTCACCAAATATTTCTAT+AGG | - | chr5_1:3545181-3545200 | None:intergenic | 30.0% |
| ! | TTTTATCCATCATCAAAGCA+TGG | + | chr5_1:3545281-3545300 | Msa0711650:intron | 30.0% |
| TTTATCCATCATCAAAGCAT+GGG | + | chr5_1:3545282-3545301 | Msa0711650:intron | 30.0% | |
| CAATGAGGAACTTAACTATT+AGG | - | chr5_1:3545402-3545421 | None:intergenic | 30.0% | |
| AAGTTGTAGTAAAAGCAATG+AGG | - | chr5_1:3545417-3545436 | None:intergenic | 30.0% | |
| TTACTACAACTTACTAGTCA+CGG | + | chr5_1:3545425-3545444 | Msa0711650:intron | 30.0% | |
| TTGATTGTCACAAGAATTTC+AGG | + | chr5_1:3545463-3545482 | Msa0711650:intron | 30.0% | |
| TGATTGTCACAAGAATTTCA+GGG | + | chr5_1:3545464-3545483 | Msa0711650:intron | 30.0% | |
| AGATAAGGATACAGAACTTA+CGG | - | chr5_1:3545567-3545586 | None:intergenic | 30.0% | |
| ! | TGACACAACTGTTTTCAATT+TGG | + | chr5_1:3545623-3545642 | Msa0711650:intron | 30.0% |
| !!! | GAGTGTTGTTTCATTTGTTT+TGG | + | chr5_1:3545754-3545773 | Msa0711650:intron | 30.0% |
| ! | TCATCATATTTTATGGTGGT+GGG | - | chr5_1:3545876-3545895 | None:intergenic | 30.0% |
| ! | ATCATCATATTTTATGGTGG+TGG | - | chr5_1:3545877-3545896 | None:intergenic | 30.0% |
| ! | CGAATCATCATATTTTATGG+TGG | - | chr5_1:3545880-3545899 | None:intergenic | 30.0% |
| TGGAAAAGACTGAACAATAT+TGG | + | chr5_1:3546070-3546089 | Msa0711650:CDS | 30.0% | |
| AAGACTGAACAATATTGGAA+AGG | + | chr5_1:3546075-3546094 | Msa0711650:CDS | 30.0% | |
| TCAACATAGTTGGGAAAATT+AGG | + | chr5_1:3546359-3546378 | Msa0711650:intron | 30.0% | |
| CAACATAGTTGGGAAAATTA+GGG | + | chr5_1:3546360-3546379 | Msa0711650:intron | 30.0% | |
| AACATAGTTGGGAAAATTAG+GGG | + | chr5_1:3546361-3546380 | Msa0711650:intron | 30.0% | |
| ! | ATTTGCATTCGTAGCAATTT+TGG | - | chr5_1:3546388-3546407 | None:intergenic | 30.0% |
| ATTGCTACGAATGCAAATAT+AGG | + | chr5_1:3546390-3546409 | Msa0711650:intron | 30.0% | |
| TTGCTACGAATGCAAATATA+GGG | + | chr5_1:3546391-3546410 | Msa0711650:intron | 30.0% | |
| ! | TGAGAGGAAGATTATCTTTT+AGG | + | chr5_1:3546498-3546517 | Msa0711650:intron | 30.0% |
| !!! | GGAAGATTATCTTTTAGGAT+CGG | + | chr5_1:3546503-3546522 | Msa0711650:intron | 30.0% |
| GTATACAGTTGATCTATAGT+TGG | - | chr5_1:3546902-3546921 | None:intergenic | 30.0% | |
| !! | ACAAGTGGTATTCCTTATTT+TGG | - | chr5_1:3546970-3546989 | None:intergenic | 30.0% |
| TAGGGAGAAAAATAAATACG+CGG | - | chr5_1:3547027-3547046 | None:intergenic | 30.0% | |
| GTTGGTCATTTAGGTATTTA+GGG | - | chr5_1:3547045-3547064 | None:intergenic | 30.0% | |
| AGTTGGTCATTTAGGTATTT+AGG | - | chr5_1:3547046-3547065 | None:intergenic | 30.0% | |
| ! | AGTGTTGGAAATTATAGAGT+TGG | - | chr5_1:3547063-3547082 | None:intergenic | 30.0% |
| ! | ATAGCATTTGTTAACTACTG+TGG | - | chr5_1:3547088-3547107 | None:intergenic | 30.0% |
| ! | CTGTATCTGTTTTATGTAAG+AGG | + | chr5_1:3547127-3547146 | Msa0711650:intron | 30.0% |
| ! | AGGTTATCATGGATTATTGT+AGG | + | chr5_1:3547210-3547229 | Msa0711650:intron | 30.0% |
| GTTAATTGCCTAATATTGCA+TGG | + | chr5_1:3547232-3547251 | Msa0711650:intron | 30.0% | |
| TTGTGCAAAAGATTCTAAAC+AGG | + | chr5_1:3547340-3547359 | Msa0711650:intron | 30.0% | |
| CAAAAACTAAAACAATGCGA+GGG | - | chr5_1:3547539-3547558 | None:intergenic | 30.0% | |
| CTAGAATGGAATTAAACATC+TGG | + | chr5_1:3547629-3547648 | Msa0711650:intron | 30.0% | |
| ! | CAGTTATCATCAACACTTTT+TGG | - | chr5_1:3547688-3547707 | None:intergenic | 30.0% |
| ! | TAATCTGAAACTGATAACTC+TGG | + | chr5_1:3547803-3547822 | Msa0711650:intron | 30.0% |
| ! | TTATGGTTTTCTTCGTTACT+TGG | + | chr5_1:3548066-3548085 | Msa0711650:intron | 30.0% |
| TTTATTGCTCGTAACCAAAT+AGG | + | chr5_1:3548160-3548179 | Msa0711650:CDS | 30.0% | |
| CTGATTAAGTTTGTACTGTT+TGG | + | chr5_1:3548395-3548414 | Msa0711650:intron | 30.0% | |
| AGAAAAAATTGTTACCGAAC+AGG | + | chr5_1:3548605-3548624 | Msa0711650:intron | 30.0% | |
| CAATATTCTTATTATGGGGA+TGG | - | chr5_1:3548665-3548684 | None:intergenic | 30.0% | |
| TCCCCATAATAAGAATATTG+TGG | + | chr5_1:3548665-3548684 | Msa0711650:intron | 30.0% | |
| GCCACAATATTCTTATTATG+GGG | - | chr5_1:3548669-3548688 | None:intergenic | 30.0% | |
| GAGCCACAATATTCTTATTA+TGG | - | chr5_1:3548671-3548690 | None:intergenic | 30.0% | |
| ! | GTTTTTACTGTATCCATGAT+TGG | + | chr5_1:3548692-3548711 | Msa0711650:intron | 30.0% |
| CACACAAACAAACATATATG+TGG | + | chr5_1:3548867-3548886 | Msa0711650:intron | 30.0% | |
| AACCATTATCATAGATTGGA+TGG | - | chr5_1:3548941-3548960 | None:intergenic | 30.0% | |
| ATGGAATCAAATAGTTCATG+TGG | - | chr5_1:3548996-3549015 | None:intergenic | 30.0% | |
| ACATGAACTATTTGATTCCA+TGG | + | chr5_1:3548995-3549014 | Msa0711650:intron | 30.0% | |
| TGATGAAAATAGTGCAAACT+TGG | - | chr5_1:3549045-3549064 | None:intergenic | 30.0% | |
| TTCCAATCTATAAGAACAAG+GGG | + | chr5_1:3549115-3549134 | Msa0711650:intron | 30.0% | |
| !!! | AGTTTTCATTGATTTGGAGA+AGG | + | chr5_1:3549350-3549369 | Msa0711650:intron | 30.0% |
| !! | ATCCTGGATAGCTTTAATAT+AGG | - | chr5_1:3549439-3549458 | None:intergenic | 30.0% |
| ! | GTAGATTTTCCCATAACAAT+AGG | + | chr5_1:3549507-3549526 | Msa0711650:intron | 30.0% |
| !!! | TTTAGTTTTGGATGTACTGA+CGG | + | chr5_1:3549569-3549588 | Msa0711650:intron | 30.0% |
| TATCTAAACTGTGTAACTTG+GGG | - | chr5_1:3549819-3549838 | None:intergenic | 30.0% | |
| GATATCTAAACTGTGTAACT+TGG | - | chr5_1:3549821-3549840 | None:intergenic | 30.0% | |
| GTTACACAGTTTAGATATCT+TGG | + | chr5_1:3549822-3549841 | Msa0711650:intron | 30.0% | |
| ! | AAAGTACTACTTAAGCTGAA+AGG | + | chr5_1:3549948-3549967 | Msa0711650:intron | 30.0% |
| AGCACCTATAGTAGAAAAAT+TGG | + | chr5_1:3550140-3550159 | Msa0711650:intron | 30.0% | |
| GTAGAAAATATAGGCTTAGA+TGG | + | chr5_1:3550162-3550181 | Msa0711650:intron | 30.0% | |
| AAATATAGGCTTAGATGGTT+TGG | + | chr5_1:3550167-3550186 | Msa0711650:intron | 30.0% | |
| TTGATCTACTCTTCTTACAA+CGG | - | chr5_1:3550219-3550238 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | + | chr5_1:3550220-3550239 | Msa0711650:intron | 30.0% | |
| ! | GTTTCTCTAATGGTTTTCTT+AGG | - | chr5_1:3550278-3550297 | None:intergenic | 30.0% |
| ! | TTTTCGAATGGTTTCTCTAA+TGG | - | chr5_1:3550288-3550307 | None:intergenic | 30.0% |
| AACCATTCGAAAAGATTTAG+AGG | + | chr5_1:3550295-3550314 | Msa0711650:intron | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr5_1:3550339-3550358 | Msa0711650:intron | 30.0% |
| ATTACACAGACAATATCGAA+TGG | - | chr5_1:3550806-3550825 | None:intergenic | 30.0% | |
| AGTTTCTTATTGCCTTTCTA+GGG | - | chr5_1:3550870-3550889 | None:intergenic | 30.0% | |
| AAGTTTCTTATTGCCTTTCT+AGG | - | chr5_1:3550871-3550890 | None:intergenic | 30.0% | |
| GAATTACACTAGCATATTTG+AGG | + | chr5_1:3551245-3551264 | Msa0711650:intron | 30.0% | |
| ATGCTTACATATTTGGTAGA+TGG | + | chr5_1:3551592-3551611 | Msa0711650:three_prime_UTR | 30.0% | |
| GAGATGCCTAAATTAATTGT+GGG | - | chr5_1:3551669-3551688 | None:intergenic | 30.0% | |
| TGAGATGCCTAAATTAATTG+TGG | - | chr5_1:3551670-3551689 | None:intergenic | 30.0% | |
| AATTTAGGCATCTCATATCA+AGG | + | chr5_1:3551675-3551694 | Msa0711650:three_prime_UTR | 30.0% | |
| TCGATTCAAACAAAACGCAA+TGG | + | chr5_1:3542893-3542912 | Msa0711650:exon | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | - | chr5_1:3543026-3543045 | None:intergenic | 35.0% | |
| GAAAAAGATGAAGATCGAAG+TGG | - | chr5_1:3543051-3543070 | None:intergenic | 35.0% | |
| AAATACACAGACCAATCCAA+CGG | - | chr5_1:3543137-3543156 | None:intergenic | 35.0% | |
| ! | GTTTTTCATGTTTACATGGC+AGG | + | chr5_1:3543293-3543312 | Msa0711650:intron | 35.0% |
| CCGTGTAAACAAAATACAAC+AGG | - | chr5_1:3543329-3543348 | None:intergenic | 35.0% | |
| !! | GTTGTATTTTGTTTACACGG+TGG | + | chr5_1:3543329-3543348 | Msa0711650:intron | 35.0% |
| !! | GATTGATTGTGATTTGCTGA+CGG | + | chr5_1:3543497-3543516 | Msa0711650:intron | 35.0% |
| ! | CATTTTTGATGTTGTGTCCA+TGG | + | chr5_1:3543546-3543565 | Msa0711650:intron | 35.0% |
| AGAGAGTTGTAAACTCTACA+AGG | + | chr5_1:3543651-3543670 | Msa0711650:intron | 35.0% | |
| GAGAGTTGTAAACTCTACAA+GGG | + | chr5_1:3543652-3543671 | Msa0711650:intron | 35.0% | |
| TAACTAACACGTAACCGAAT+AGG | + | chr5_1:3543750-3543769 | Msa0711650:intron | 35.0% | |
| TAACAGTACGTGCACATTTA+AGG | - | chr5_1:3543985-3544004 | None:intergenic | 35.0% | |
| CCTGTAATGAAATAATGTGG+AGG | - | chr5_1:3544077-3544096 | None:intergenic | 35.0% | |
| CCTCCACATTATTTCATTAC+AGG | + | chr5_1:3544074-3544093 | Msa0711650:intron | 35.0% | |
| TGTGTCAACGGGTATAATTA+AGG | + | chr5_1:3544108-3544127 | Msa0711650:CDS | 35.0% | |
| TTGACTTATCTGTTGAGGTA+CGG | + | chr5_1:3544194-3544213 | Msa0711650:intron | 35.0% | |
| CAAAAACCAACAACTGAACA+TGG | - | chr5_1:3544266-3544285 | None:intergenic | 35.0% | |
| TACTTCTCCTGTGATTGTAA+TGG | + | chr5_1:3544289-3544308 | Msa0711650:intron | 35.0% | |
| ATGATCACCATTACAATCAC+AGG | - | chr5_1:3544299-3544318 | None:intergenic | 35.0% | |
| TGAATCTTTGTGAAGCATGT+TGG | + | chr5_1:3544495-3544514 | Msa0711650:intron | 35.0% | |
| ! | AAATACAACTCTTGGTAACC+GGG | + | chr5_1:3544606-3544625 | Msa0711650:intron | 35.0% |
| ! | TTGGTAACCGGGTAAAAATT+TGG | + | chr5_1:3544617-3544636 | Msa0711650:intron | 35.0% |
| GATGATGCTTGTCATTAAAC+AGG | - | chr5_1:3544713-3544732 | None:intergenic | 35.0% | |
| GACAAATCTAGTCAGATGAA+GGG | - | chr5_1:3544896-3544915 | None:intergenic | 35.0% | |
| TGTATCTGCTGTAAAACTGT+AGG | + | chr5_1:3544954-3544973 | Msa0711650:intron | 35.0% | |
| TTATCCATCATCAAAGCATG+GGG | + | chr5_1:3545283-3545302 | Msa0711650:intron | 35.0% | |
| AAGGAAATCATTGTCAACCT+TGG | + | chr5_1:3545332-3545351 | Msa0711650:CDS | 35.0% | |
| AATGTTGCATCCTATTTGAG+AGG | - | chr5_1:3545526-3545545 | None:intergenic | 35.0% | |
| TTGCTTGTATGCAGATTGAA+TGG | + | chr5_1:3545799-3545818 | Msa0711650:intron | 35.0% | |
| !! | CATCATATTTTATGGTGGTG+GGG | - | chr5_1:3545875-3545894 | None:intergenic | 35.0% |
| TGATGATTCGAAGAAATGGT+TGG | + | chr5_1:3545890-3545909 | Msa0711650:intron | 35.0% | |
| GTAATGAAAAGCAAGAAGAG+AGG | - | chr5_1:3545918-3545937 | None:intergenic | 35.0% | |
| !! | CTTCTTGCTTTTCATTACAC+TGG | + | chr5_1:3545920-3545939 | Msa0711650:intron | 35.0% |
| CCAGATTGGATAAAGGAAAA+AGG | - | chr5_1:3545967-3545986 | None:intergenic | 35.0% | |
| ! | CCTTTTTCCTTTATCCAATC+TGG | + | chr5_1:3545964-3545983 | Msa0711650:intron | 35.0% |
| TAAGCGTAAAACGAAGTCTA+TGG | - | chr5_1:3546001-3546020 | None:intergenic | 35.0% | |
| ! | GACTTCGTTTTACGCTTAAT+TGG | + | chr5_1:3546003-3546022 | Msa0711650:intron | 35.0% |
| TTATGTTTATCGAACAGAGC+TGG | + | chr5_1:3546050-3546069 | Msa0711650:CDS | 35.0% | |
| ! | ATTAGGCTTAAACGCACTTT+TGG | + | chr5_1:3546175-3546194 | Msa0711650:intron | 35.0% |
| AGAGTATATTTCCCTGAAGA+TGG | - | chr5_1:3546273-3546292 | None:intergenic | 35.0% | |
| ACATAGTTGGGAAAATTAGG+GGG | + | chr5_1:3546362-3546381 | Msa0711650:intron | 35.0% | |
| ! | ATAAGGCTTAAACGCACTTT+TGG | - | chr5_1:3546419-3546438 | None:intergenic | 35.0% |
| ACCACTTGTGTTCTGTAATA+AGG | + | chr5_1:3546981-3547000 | Msa0711650:intron | 35.0% | |
| ACCTTATTACAGAACACAAG+TGG | - | chr5_1:3546985-3547004 | None:intergenic | 35.0% | |
| TTAACTACTGTGGATAGTGT+TGG | - | chr5_1:3547078-3547097 | None:intergenic | 35.0% | |
| GATTCTAAACAGGTAGAACT+AGG | + | chr5_1:3547350-3547369 | Msa0711650:intron | 35.0% | |
| ATTAGCAGGAACAGATAGAT+TGG | + | chr5_1:3547502-3547521 | Msa0711650:CDS | 35.0% | |
| CCAAAAACTAAAACAATGCG+AGG | - | chr5_1:3547540-3547559 | None:intergenic | 35.0% | |
| !!! | CCTCGCATTGTTTTAGTTTT+TGG | + | chr5_1:3547537-3547556 | Msa0711650:intron | 35.0% |
| ACAACAAGTAAAGGTTTCTC+TGG | - | chr5_1:3547590-3547609 | None:intergenic | 35.0% | |
| ! | AGAGAAACCTTTACTTGTTG+TGG | + | chr5_1:3547589-3547608 | Msa0711650:intron | 35.0% |
| TGATAAGCCACAACAAGTAA+AGG | - | chr5_1:3547599-3547618 | None:intergenic | 35.0% | |
| CTACTCTACTACTTGGAAAT+TGG | - | chr5_1:3547717-3547736 | None:intergenic | 35.0% | |
| TCACAATCTACTCTACTACT+TGG | - | chr5_1:3547724-3547743 | None:intergenic | 35.0% | |
| TTCTGTTTGCTCATAAACTC+GGG | - | chr5_1:3547875-3547894 | None:intergenic | 35.0% | |
| CTTCTGTTTGCTCATAAACT+CGG | - | chr5_1:3547876-3547895 | None:intergenic | 35.0% | |
| AATGAATGCAGCAAGAAACA+TGG | - | chr5_1:3548038-3548057 | None:intergenic | 35.0% | |
| ACAAGAGTTGCAAATTCATC+AGG | - | chr5_1:3548133-3548152 | None:intergenic | 35.0% | |
| GTTTACAATTGTCCTGCAAA+TGG | + | chr5_1:3548230-3548249 | Msa0711650:intron | 35.0% | |
| ! | TCTGTTAAGCTAGCTTATAG+CGG | + | chr5_1:3548304-3548323 | Msa0711650:intron | 35.0% |
| ! | TAGCTGATAAGCTAGCTTAT+AGG | + | chr5_1:3548328-3548347 | Msa0711650:intron | 35.0% |
| ! | AGCTGATAAGCTAGCTTATA+GGG | + | chr5_1:3548329-3548348 | Msa0711650:intron | 35.0% |
| !! | ATCAAAAAGCGCTATATGCT+AGG | + | chr5_1:3548560-3548579 | Msa0711650:intron | 35.0% |
| ATGACCAAAATAGACCTGTT+CGG | - | chr5_1:3548622-3548641 | None:intergenic | 35.0% | |
| TATTCTTATTATGGGGATGG+CGG | - | chr5_1:3548662-3548681 | None:intergenic | 35.0% | |
| TCAGGTTTCTCCATTCTATA+TGG | + | chr5_1:3548716-3548735 | Msa0711650:intron | 35.0% | |
| !! | TTTGATTTCTGAAGCTTCAG+AGG | - | chr5_1:3548817-3548836 | None:intergenic | 35.0% |
| TAGACAATGAATCGCAAACT+GGG | - | chr5_1:3548913-3548932 | None:intergenic | 35.0% | |
| ATAGACAATGAATCGCAAAC+TGG | - | chr5_1:3548914-3548933 | None:intergenic | 35.0% | |
| AGCCATCCAATCTATGATAA+TGG | + | chr5_1:3548936-3548955 | Msa0711650:intron | 35.0% | |
| AGGCAACCATTATCATAGAT+TGG | - | chr5_1:3548945-3548964 | None:intergenic | 35.0% | |
| ATAATGGTTGCCTTCTTTGA+GGG | + | chr5_1:3548952-3548971 | Msa0711650:intron | 35.0% | |
| ! | ATACCCTTCCATTTTCGATT+AGG | + | chr5_1:3549018-3549037 | Msa0711650:intron | 35.0% |
| AACTTGGACCTAATCGAAAA+TGG | - | chr5_1:3549029-3549048 | None:intergenic | 35.0% | |
| TCCAATCTATAAGAACAAGG+GGG | + | chr5_1:3549116-3549135 | Msa0711650:intron | 35.0% | |
| TACAACATTGCGCGAATTAT+AGG | + | chr5_1:3549142-3549161 | Msa0711650:intron | 35.0% | |
| ACAACATTGCGCGAATTATA+GGG | + | chr5_1:3549143-3549162 | Msa0711650:intron | 35.0% | |
| TGAGTCATACCATGAAGTTA+TGG | + | chr5_1:3549178-3549197 | Msa0711650:intron | 35.0% | |
| GAGTCATACCATGAAGTTAT+GGG | + | chr5_1:3549179-3549198 | Msa0711650:intron | 35.0% | |
| ATACCATGAAGTTATGGGAA+AGG | + | chr5_1:3549184-3549203 | Msa0711650:intron | 35.0% | |
| TACCATGAAGTTATGGGAAA+GGG | + | chr5_1:3549185-3549204 | Msa0711650:intron | 35.0% | |
| AAGAAAAGAGACTCACGTTA+CGG | + | chr5_1:3549224-3549243 | Msa0711650:intron | 35.0% | |
| !!! | AACCAATTTGGTTTTATGCC+TGG | + | chr5_1:3549249-3549268 | Msa0711650:intron | 35.0% |
| !!! | ACCAATTTGGTTTTATGCCT+GGG | + | chr5_1:3549250-3549269 | Msa0711650:intron | 35.0% |
| TGCCTATATTAAAGCTATCC+AGG | + | chr5_1:3549434-3549453 | Msa0711650:intron | 35.0% | |
| ! | TCTGCAAAAAGCATACATCT+CGG | - | chr5_1:3549615-3549634 | None:intergenic | 35.0% |
| TGGAATGTAACTTCAGCAAA+AGG | + | chr5_1:3549748-3549767 | Msa0711650:intron | 35.0% | |
| !! | TTCTCCGTCATTTTGTACTA+TGG | - | chr5_1:3549850-3549869 | None:intergenic | 35.0% |
| TACATCATCGTATTCAAGCT+GGG | + | chr5_1:3549883-3549902 | Msa0711650:intron | 35.0% | |
| TACTACTTAAGCTGAAAGGA+AGG | + | chr5_1:3549952-3549971 | Msa0711650:intron | 35.0% | |
| AGACTAGACATGATAGGATT+AGG | + | chr5_1:3550088-3550107 | Msa0711650:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr5_1:3550223-3550242 | Msa0711650:intron | 35.0% | |
| ! | GACCTCTAAATCTTTTCGAA+TGG | - | chr5_1:3550300-3550319 | None:intergenic | 35.0% |
| AGATTTAGAGGTCAATGAGT+TGG | + | chr5_1:3550307-3550326 | Msa0711650:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr5_1:3550319-3550338 | Msa0711650:intron | 35.0% |
| !! | TTAGTGATGGATACAATGGA+GGG | - | chr5_1:3550481-3550500 | None:intergenic | 35.0% |
| !! | TTGGTTAGTGATGGATACAA+TGG | - | chr5_1:3550485-3550504 | None:intergenic | 35.0% |
| TATCCATCACTAACCAAGAA+AGG | + | chr5_1:3550488-3550507 | Msa0711650:intron | 35.0% | |
| ATTTGCATGAAGGATCAATG+AGG | - | chr5_1:3550664-3550683 | None:intergenic | 35.0% | |
| TTGATCCTTCATGCAAATAC+TGG | + | chr5_1:3550666-3550685 | Msa0711650:intron | 35.0% | |
| AAAACCACTACTTTCAACGA+GGG | - | chr5_1:3550910-3550929 | None:intergenic | 35.0% | |
| ! | TGGTTTTCTTCATCCCATTT+TGG | + | chr5_1:3550923-3550942 | Msa0711650:intron | 35.0% |
| ACTTCAATTTCACATTCGCA+CGG | - | chr5_1:3551059-3551078 | None:intergenic | 35.0% | |
| CTTCATAGCTTAGTAAATGC+AGG | - | chr5_1:3551171-3551190 | None:intergenic | 35.0% | |
| TTTATCCAACACCTGATTCA+GGG | - | chr5_1:3551498-3551517 | None:intergenic | 35.0% | |
| CATCTCATATCAAGGTACAA+TGG | + | chr5_1:3551683-3551702 | Msa0711650:three_prime_UTR | 35.0% | |
| ATCAAGGTACAATGGAAGAA+AGG | + | chr5_1:3551732-3551751 | Msa0711650:three_prime_UTR | 35.0% | |
| TGGAAAAAAGGCTTGATTTC+TGG | + | chr5_1:3551792-3551811 | Msa0711650:three_prime_UTR | 35.0% | |
| GTTTGAATCGATCTATGAGG+AGG | - | chr5_1:3542884-3542903 | None:intergenic | 40.0% | |
| GAAGAAGGTGGTTACTTAGT+TGG | - | chr5_1:3543011-3543030 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAGAAGAAGG+TGG | - | chr5_1:3543023-3543042 | None:intergenic | 40.0% | |
| !! | GTATTTTGTTTACACGGTGG+TGG | + | chr5_1:3543332-3543351 | Msa0711650:intron | 40.0% |
| ! | TTGTCGCAGAGTTAGTTTCA+TGG | - | chr5_1:3543810-3543829 | None:intergenic | 40.0% |
| GGAATAAATCGAGCTGGTTA+GGG | - | chr5_1:3543861-3543880 | None:intergenic | 40.0% | |
| AGGAATAAATCGAGCTGGTT+AGG | - | chr5_1:3543862-3543881 | None:intergenic | 40.0% | |
| !! | GCTTTCATTTGCTGTGTCAA+CGG | + | chr5_1:3544096-3544115 | Msa0711650:CDS | 40.0% |
| !! | CTTTCATTTGCTGTGTCAAC+GGG | + | chr5_1:3544097-3544116 | Msa0711650:CDS | 40.0% |
| AATTAAGGAGAAAGCTAGGG+TGG | + | chr5_1:3544123-3544142 | Msa0711650:CDS | 40.0% | |
| GACCATGTGCAATGATGTAT+TGG | + | chr5_1:3544333-3544352 | Msa0711650:intron | 40.0% | |
| AGCCAATACATCATTGCACA+TGG | - | chr5_1:3544338-3544357 | None:intergenic | 40.0% | |
| ATTGAAGGGGGACAAATTTC+AGG | + | chr5_1:3544657-3544676 | Msa0711650:intron | 40.0% | |
| TTGAAGGGGGACAAATTTCA+GGG | + | chr5_1:3544658-3544677 | Msa0711650:intron | 40.0% | |
| TCCTTCGTTGAACTTCACAT+GGG | - | chr5_1:3544793-3544812 | None:intergenic | 40.0% | |
| TTCCTTCGTTGAACTTCACA+TGG | - | chr5_1:3544794-3544813 | None:intergenic | 40.0% | |
| TGTGAAGTTCAACGAAGGAA+AGG | + | chr5_1:3544794-3544813 | Msa0711650:intron | 40.0% | |
| ATGAGGCAGGTAAAAAAACG+AGG | - | chr5_1:3544862-3544881 | None:intergenic | 40.0% | |
| CGACAAATCTAGTCAGATGA+AGG | - | chr5_1:3544897-3544916 | None:intergenic | 40.0% | |
| CAGAAAGTGATAATCGAGTC+AGG | - | chr5_1:3545207-3545226 | None:intergenic | 40.0% | |
| TATCCATCATCAAAGCATGG+GGG | + | chr5_1:3545284-3545303 | Msa0711650:intron | 40.0% | |
| AAATCATTGTCAACCTTGGC+TGG | + | chr5_1:3545336-3545355 | Msa0711650:CDS | 40.0% | |
| AATCATTGTCAACCTTGGCT+GGG | + | chr5_1:3545337-3545356 | Msa0711650:CDS | 40.0% | |
| GATTGTTGTGGATGTTGTAG+AGG | + | chr5_1:3545362-3545381 | Msa0711650:CDS | 40.0% | |
| TACAACTTACTAGTCACGGA+TGG | + | chr5_1:3545429-3545448 | Msa0711650:intron | 40.0% | |
| ACAACTTACTAGTCACGGAT+GGG | + | chr5_1:3545430-3545449 | Msa0711650:intron | 40.0% | |
| AGAATTTCAGGGAACAGCAA+TGG | + | chr5_1:3545475-3545494 | Msa0711650:intron | 40.0% | |
| TGCAGCAAATCCTCTCAAAT+AGG | + | chr5_1:3545513-3545532 | Msa0711650:intron | 40.0% | |
| CAGTTGTGTCAACCATGTAT+CGG | - | chr5_1:3545614-3545633 | None:intergenic | 40.0% | |
| !! | CTTGCTTTTCATTACACTGG+TGG | + | chr5_1:3545923-3545942 | Msa0711650:intron | 40.0% |
| AGCTTGTCCAGATTGGATAA+AGG | - | chr5_1:3545974-3545993 | None:intergenic | 40.0% | |
| TTTATCCAATCTGGACAAGC+TGG | + | chr5_1:3545973-3545992 | Msa0711650:intron | 40.0% | |
| CTGAACAATATTGGAAAGGC+TGG | + | chr5_1:3546079-3546098 | Msa0711650:CDS | 40.0% | |
| TTGCTACGATGGCAAACATT+GGG | - | chr5_1:3546203-3546222 | None:intergenic | 40.0% | |
| ATTGCTACGATGGCAAACAT+TGG | - | chr5_1:3546204-3546223 | None:intergenic | 40.0% | |
| ! | GTTTGCCATCGTAGCAATTT+TGG | + | chr5_1:3546206-3546225 | Msa0711650:intron | 40.0% |
| CTGAAGATGGCAAAATTAGG+GGG | - | chr5_1:3546260-3546279 | None:intergenic | 40.0% | |
| CCTGAAGATGGCAAAATTAG+GGG | - | chr5_1:3546261-3546280 | None:intergenic | 40.0% | |
| CCCTGAAGATGGCAAAATTA+GGG | - | chr5_1:3546262-3546281 | None:intergenic | 40.0% | |
| ! | CCCTAATTTTGCCATCTTCA+GGG | + | chr5_1:3546259-3546278 | Msa0711650:intron | 40.0% |
| TCCCTGAAGATGGCAAAATT+AGG | - | chr5_1:3546263-3546282 | None:intergenic | 40.0% | |
| CAAGGTCAAACAATTCATCG+AGG | - | chr5_1:3547172-3547191 | None:intergenic | 40.0% | |
| ATAACAACAGCTTCGGAACA+GGG | - | chr5_1:3547484-3547503 | None:intergenic | 40.0% | |
| AATAACAACAGCTTCGGAAC+AGG | - | chr5_1:3547485-3547504 | None:intergenic | 40.0% | |
| CCTGCTAATAACAACAGCTT+CGG | - | chr5_1:3547491-3547510 | None:intergenic | 40.0% | |
| TCTGTTTGCTCATAAACTCG+GGG | - | chr5_1:3547874-3547893 | None:intergenic | 40.0% | |
| !! | AGCAAACAGAAGTGTTCTAG+TGG | + | chr5_1:3547884-3547903 | Msa0711650:intron | 40.0% |
| !! | ATTGGCACTGTTTCTGTAAC+AGG | + | chr5_1:3547929-3547948 | Msa0711650:intron | 40.0% |
| TGTAACAGGTCTCTCACAAT+TGG | + | chr5_1:3547943-3547962 | Msa0711650:intron | 40.0% | |
| CTCACAATTGGTCAAATGCA+AGG | + | chr5_1:3547955-3547974 | Msa0711650:CDS | 40.0% | |
| ATGATAGTTGTCAGACACAC+AGG | + | chr5_1:3547988-3548007 | Msa0711650:CDS | 40.0% | |
| TGATAGTTGTCAGACACACA+GGG | + | chr5_1:3547989-3548008 | Msa0711650:CDS | 40.0% | |
| TACATACCACGACTCCATTA+GGG | - | chr5_1:3548186-3548205 | None:intergenic | 40.0% | |
| ATACATACCACGACTCCATT+AGG | - | chr5_1:3548187-3548206 | None:intergenic | 40.0% | |
| !! | ACAGTATTGGTACCATTTGC+AGG | - | chr5_1:3548245-3548264 | None:intergenic | 40.0% |
| ! | GCTGATAAGCTAGCTTATAG+GGG | + | chr5_1:3548330-3548349 | Msa0711650:intron | 40.0% |
| GTACTGTTTGGCAAAATCAG+CGG | + | chr5_1:3548407-3548426 | Msa0711650:intron | 40.0% | |
| ! | GTTACCGAACAGGTCTATTT+TGG | + | chr5_1:3548615-3548634 | Msa0711650:intron | 40.0% |
| ACTGTATCCATGATTGGATC+AGG | + | chr5_1:3548698-3548717 | Msa0711650:intron | 40.0% | |
| ! | GATAATGGTTGCCTTCTTTG+AGG | + | chr5_1:3548951-3548970 | Msa0711650:intron | 40.0% |
| ACATAGCATACCCTCAAAGA+AGG | - | chr5_1:3548965-3548984 | None:intergenic | 40.0% | |
| GGACCTAATCGAAAATGGAA+GGG | - | chr5_1:3549024-3549043 | None:intergenic | 40.0% | |
| TGGACCTAATCGAAAATGGA+AGG | - | chr5_1:3549025-3549044 | None:intergenic | 40.0% | |
| TCCCCCTTGTTCTTATAGAT+TGG | - | chr5_1:3549120-3549139 | None:intergenic | 40.0% | |
| CAACATTGCGCGAATTATAG+GGG | + | chr5_1:3549144-3549163 | Msa0711650:intron | 40.0% | |
| TACCCTTTCCCATAACTTCA+TGG | - | chr5_1:3549190-3549209 | None:intergenic | 40.0% | |
| CACGTTACGGATAACCAATT+TGG | + | chr5_1:3549237-3549256 | Msa0711650:intron | 40.0% | |
| TCCCAGGCATAAAACCAAAT+TGG | - | chr5_1:3549254-3549273 | None:intergenic | 40.0% | |
| !!! | AATTTGGTTTTATGCCTGGG+AGG | + | chr5_1:3549253-3549272 | Msa0711650:intron | 40.0% |
| ! | GAGTACCTAGAGAGATTTTG+TGG | + | chr5_1:3549382-3549401 | Msa0711650:intron | 40.0% |
| GCTTTCCACAAAATCTCTCT+AGG | - | chr5_1:3549390-3549409 | None:intergenic | 40.0% | |
| ! | AGAGATTTTGTGGAAAGCCT+TGG | + | chr5_1:3549392-3549411 | Msa0711650:intron | 40.0% |
| AGCTATCCAGGATATGTATG+AGG | + | chr5_1:3549446-3549465 | Msa0711650:intron | 40.0% | |
| GCTATCCAGGATATGTATGA+GGG | + | chr5_1:3549447-3549466 | Msa0711650:intron | 40.0% | |
| CTATCCAGGATATGTATGAG+GGG | + | chr5_1:3549448-3549467 | Msa0711650:intron | 40.0% | |
| TATCCAGGATATGTATGAGG+GGG | + | chr5_1:3549449-3549468 | Msa0711650:intron | 40.0% | |
| TGGTGCAGTCCTATTGTTAT+GGG | - | chr5_1:3549519-3549538 | None:intergenic | 40.0% | |
| TTGGTGCAGTCCTATTGTTA+TGG | - | chr5_1:3549520-3549539 | None:intergenic | 40.0% | |
| ATAACAATAGGACTGCACCA+AGG | + | chr5_1:3549519-3549538 | Msa0711650:intron | 40.0% | |
| TAACAATAGGACTGCACCAA+GGG | + | chr5_1:3549520-3549539 | Msa0711650:intron | 40.0% | |
| TAGAAGCAAGACGGAGTATA+TGG | + | chr5_1:3549728-3549747 | Msa0711650:intron | 40.0% | |
| ACTTCAGCAAAAGGAGAAGT+AGG | + | chr5_1:3549757-3549776 | Msa0711650:intron | 40.0% | |
| GGGTCCATAGTACAAAATGA+CGG | + | chr5_1:3549843-3549862 | Msa0711650:intron | 40.0% | |
| GTACATCATCGTATTCAAGC+TGG | + | chr5_1:3549882-3549901 | Msa0711650:intron | 40.0% | |
| AGCTGAAAGGAAGGTTCTAT+CGG | + | chr5_1:3549961-3549980 | Msa0711650:intron | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr5_1:3550082-3550101 | Msa0711650:intron | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | + | chr5_1:3550248-3550267 | Msa0711650:intron | 40.0% | |
| AGCATGCATGCATTTAGTCA+TGG | + | chr5_1:3550430-3550449 | Msa0711650:intron | 40.0% | |
| !! | GTTAGTGATGGATACAATGG+AGG | - | chr5_1:3550482-3550501 | None:intergenic | 40.0% |
| GTTCCTTTCTTGGTTAGTGA+TGG | - | chr5_1:3550494-3550513 | None:intergenic | 40.0% | |
| ACTAACCAAGAAAGGAACGA+GGG | + | chr5_1:3550496-3550515 | Msa0711650:intron | 40.0% | |
| GCTTACCAGTATTTGCATGA+AGG | - | chr5_1:3550674-3550693 | None:intergenic | 40.0% | |
| GCAAATACTGGTAAGCACAA+TGG | + | chr5_1:3550678-3550697 | Msa0711650:intron | 40.0% | |
| AATACTGGTAAGCACAATGG+TGG | + | chr5_1:3550681-3550700 | Msa0711650:intron | 40.0% | |
| CATGACACTATCTCCTTACA+AGG | + | chr5_1:3550727-3550746 | Msa0711650:intron | 40.0% | |
| !! | TCGTCTCGTTTTTCCTTGTA+AGG | - | chr5_1:3550743-3550762 | None:intergenic | 40.0% |
| ! | GAATGTCTAACTGTGTTGAC+TGG | + | chr5_1:3550838-3550857 | Msa0711650:intron | 40.0% |
| AAACCACTACTTTCAACGAG+GGG | - | chr5_1:3550909-3550928 | None:intergenic | 40.0% | |
| GAAAACCACTACTTTCAACG+AGG | - | chr5_1:3550911-3550930 | None:intergenic | 40.0% | |
| TGCTTTCCTTACGCCAAAAT+GGG | - | chr5_1:3550939-3550958 | None:intergenic | 40.0% | |
| ATGCTTTCCTTACGCCAAAA+TGG | - | chr5_1:3550940-3550959 | None:intergenic | 40.0% | |
| GTGTTGAATCAGACTATACG+AGG | - | chr5_1:3551029-3551048 | None:intergenic | 40.0% | |
| CTTCAATTTCACATTCGCAC+GGG | - | chr5_1:3551058-3551077 | None:intergenic | 40.0% | |
| !! | GCTTCTGAGATTATGAGTTC+TGG | + | chr5_1:3551128-3551147 | Msa0711650:intron | 40.0% |
| GTTTATCCAACACCTGATTC+AGG | - | chr5_1:3551499-3551518 | None:intergenic | 40.0% | |
| ! | GGTGTTGGATAAACCAAGAA+CGG | + | chr5_1:3551505-3551524 | Msa0711650:three_prime_UTR | 40.0% |
| !! | AAAAAGGCTTGATTTCTGGC+AGG | + | chr5_1:3551796-3551815 | Msa0711650:three_prime_UTR | 40.0% |
| TTGATCGTCGGTGATGTCTT+CGG | - | chr5_1:3542943-3542962 | None:intergenic | 45.0% | |
| TTGAGGAGCAGAAGCGAAAA+CGG | - | chr5_1:3542982-3543001 | None:intergenic | 45.0% | |
| TACTTAGTTGGAGGACGTTG+AGG | - | chr5_1:3542999-3543018 | None:intergenic | 45.0% | |
| GAAGGTGGTTACTTAGTTGG+AGG | - | chr5_1:3543008-3543027 | None:intergenic | 45.0% | |
| AGAAATACGCACCGTTGGAT+TGG | + | chr5_1:3543123-3543142 | Msa0711650:CDS | 45.0% | |
| TGTTTACATGGCAGGAACTG+AGG | + | chr5_1:3543301-3543320 | Msa0711650:intron | 45.0% | |
| GTTTACATGGCAGGAACTGA+GGG | + | chr5_1:3543302-3543321 | Msa0711650:intron | 45.0% | |
| ! | TTACACGGTGGTGGTTATTC+TGG | + | chr5_1:3543341-3543360 | Msa0711650:intron | 45.0% |
| ! | TACACGGTGGTGGTTATTCT+GGG | + | chr5_1:3543342-3543361 | Msa0711650:intron | 45.0% |
| CCATGGAGTGACATGGAAAT+CGG | + | chr5_1:3543563-3543582 | Msa0711650:intron | 45.0% | |
| !! | AAGATCGCGGGTGTTATTGA+TGG | + | chr5_1:3543828-3543847 | Msa0711650:intron | 45.0% |
| !! | AGATCGCGGGTGTTATTGAT+GGG | + | chr5_1:3543829-3543848 | Msa0711650:intron | 45.0% |
| GTGTGAGGAATAAATCGAGC+TGG | - | chr5_1:3543867-3543886 | None:intergenic | 45.0% | |
| GCACAGATCTTTCATGTGTG+AGG | - | chr5_1:3543882-3543901 | None:intergenic | 45.0% | |
| TGTGTGCCATGTTCAGTTGT+TGG | + | chr5_1:3544257-3544276 | Msa0711650:intron | 45.0% | |
| TGACCAACGAGGATAATTGC+TGG | - | chr5_1:3544391-3544410 | None:intergenic | 45.0% | |
| CAATTATCCTCGTTGGTCAC+AGG | + | chr5_1:3544392-3544411 | Msa0711650:CDS | 45.0% | |
| TAAATCACCTGTGACCAACG+AGG | - | chr5_1:3544402-3544421 | None:intergenic | 45.0% | |
| AGTGATAATCGAGTCAGGCT+AGG | - | chr5_1:3545202-3545221 | None:intergenic | 45.0% | |
| ATCCATCATCAAAGCATGGG+GGG | + | chr5_1:3545285-3545304 | Msa0711650:intron | 45.0% | |
| TTGCTGTGCATATTGCTGCA+AGG | + | chr5_1:3545313-3545332 | Msa0711650:CDS | 45.0% | |
| GTTGTGGATGTTGTAGAGGT+TGG | + | chr5_1:3545366-3545385 | Msa0711650:intron | 45.0% | |
| TGCAGATTGAATGGAGTGTG+AGG | + | chr5_1:3545808-3545827 | Msa0711650:intron | 45.0% | |
| GCAGATTGAATGGAGTGTGA+GGG | + | chr5_1:3545809-3545828 | Msa0711650:intron | 45.0% | |
| TGCTACGATGGCAAACATTG+GGG | - | chr5_1:3546202-3546221 | None:intergenic | 45.0% | |
| ! | CCCCTAATTTTGCCATCTTC+AGG | + | chr5_1:3546258-3546277 | Msa0711650:intron | 45.0% |
| !!! | TGCGATTATGGCCCCTTTTT+TGG | + | chr5_1:3546320-3546339 | Msa0711650:intron | 45.0% |
| !!! | GCGATTATGGCCCCTTTTTT+GGG | + | chr5_1:3546321-3546340 | Msa0711650:intron | 45.0% |
| TGACCTACACTAGCAGGTTA+AGG | + | chr5_1:3546751-3546770 | Msa0711650:intron | 45.0% | |
| CATCCTTAACCTGCTAGTGT+AGG | - | chr5_1:3546757-3546776 | None:intergenic | 45.0% | |
| TTGACTGACTGACACATGTC+AGG | + | chr5_1:3546778-3546797 | Msa0711650:intron | 45.0% | |
| TAGACAGCTAGAGCCGTTAT+AGG | + | chr5_1:3546819-3546838 | Msa0711650:intron | 45.0% | |
| AGACAGCTAGAGCCGTTATA+GGG | + | chr5_1:3546820-3546839 | Msa0711650:intron | 45.0% | |
| TAACAACAGCTTCGGAACAG+GGG | - | chr5_1:3547483-3547502 | None:intergenic | 45.0% | |
| ! | CCGAAGCTGTTGTTATTAGC+AGG | + | chr5_1:3547488-3547507 | Msa0711650:CDS | 45.0% |
| CAGGAACAGATAGATTGGAC+AGG | + | chr5_1:3547507-3547526 | Msa0711650:CDS | 45.0% | |
| CGTAACCAAATAGGCCCTAA+TGG | + | chr5_1:3548169-3548188 | Msa0711650:CDS | 45.0% | |
| GGAGAAACCTGATCCAATCA+TGG | - | chr5_1:3548708-3548727 | None:intergenic | 45.0% | |
| ! | CAACCTCAACTAGTCTGATG+AGG | + | chr5_1:3548782-3548801 | Msa0711650:intron | 45.0% |
| !! | CGAAAATGGAAGGGTATCCA+TGG | - | chr5_1:3549015-3549034 | None:intergenic | 45.0% |
| GCATGTTAATTCCAGACGAG+TGG | + | chr5_1:3549076-3549095 | Msa0711650:intron | 45.0% | |
| CTACTTATTTCGACGCGTGA+TGG | + | chr5_1:3549293-3549312 | Msa0711650:intron | 45.0% | |
| TGGAAAGCCTTGGAGAAGAA+AGG | + | chr5_1:3549402-3549421 | Msa0711650:intron | 45.0% | |
| GGAAAGCCTTGGAGAAGAAA+GGG | + | chr5_1:3549403-3549422 | Msa0711650:intron | 45.0% | |
| GAAAGCCTTGGAGAAGAAAG+GGG | + | chr5_1:3549404-3549423 | Msa0711650:intron | 45.0% | |
| !! | TACATCTCGGTGCTAACTCT+TGG | - | chr5_1:3549602-3549621 | None:intergenic | 45.0% |
| ! | GCAGATGATGTAGTCTTGCT+TGG | + | chr5_1:3549630-3549649 | Msa0711650:intron | 45.0% |
| AAGGAGAAGTAGGTCTACCT+TGG | + | chr5_1:3549767-3549786 | Msa0711650:intron | 45.0% | |
| TCTACCTTGGAGGTGAAAGT+TGG | + | chr5_1:3549780-3549799 | Msa0711650:intron | 45.0% | |
| ATCTCCAACTTTCACCTCCA+AGG | - | chr5_1:3549787-3549806 | None:intergenic | 45.0% | |
| ATCATCGTATTCAAGCTGGG+TGG | + | chr5_1:3549886-3549905 | Msa0711650:intron | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | + | chr5_1:3549895-3549914 | Msa0711650:intron | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | + | chr5_1:3549909-3549928 | Msa0711650:intron | 45.0% | |
| CTTATCGCACAAAACACCTG+AGG | - | chr5_1:3549928-3549947 | None:intergenic | 45.0% | |
| GCAGGCAATGTTGTATGGTA+CGG | + | chr5_1:3549987-3550006 | Msa0711650:intron | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | + | chr5_1:3549995-3550014 | Msa0711650:intron | 45.0% | |
| ! | GTTGTATGGTACGGAGTGTT+GGG | + | chr5_1:3549996-3550015 | Msa0711650:intron | 45.0% |
| CGCTTACTTTACTCTCGTGT+TGG | - | chr5_1:3550032-3550051 | None:intergenic | 45.0% | |
| CGAGAGTAAAGTAAGCGTAG+CGG | + | chr5_1:3550035-3550054 | Msa0711650:intron | 45.0% | |
| TGACACCATTAGAGAGAGAG+TGG | + | chr5_1:3550113-3550132 | Msa0711650:intron | 45.0% | |
| GACACCATTAGAGAGAGAGT+GGG | + | chr5_1:3550114-3550133 | Msa0711650:intron | 45.0% | |
| ACACCATTAGAGAGAGAGTG+GGG | + | chr5_1:3550115-3550134 | Msa0711650:intron | 45.0% | |
| TCTTCTTACAACGGCGTCTA+CGG | - | chr5_1:3550210-3550229 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | chr5_1:3550232-3550251 | Msa0711650:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | + | chr5_1:3550242-3550261 | Msa0711650:intron | 45.0% | |
| ! | AAGCCTTATCCCACTATGTG+GGG | - | chr5_1:3550388-3550407 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTATGT+GGG | - | chr5_1:3550389-3550408 | None:intergenic | 45.0% |
| TTAGTCATGGAACAGCCATC+AGG | + | chr5_1:3550443-3550462 | Msa0711650:intron | 45.0% | |
| TAGTCATGGAACAGCCATCA+GGG | + | chr5_1:3550444-3550463 | Msa0711650:intron | 45.0% | |
| GGGTGAAAAGATTACCCTGA+TGG | - | chr5_1:3550461-3550480 | None:intergenic | 45.0% | |
| CACTAACCAAGAAAGGAACG+AGG | + | chr5_1:3550495-3550514 | Msa0711650:intron | 45.0% | |
| CTAACCAAGAAAGGAACGAG+GGG | + | chr5_1:3550497-3550516 | Msa0711650:intron | 45.0% | |
| TAACCAAGAAAGGAACGAGG+GGG | + | chr5_1:3550498-3550517 | Msa0711650:intron | 45.0% | |
| GAGGGGGGACATATCTTAAT+GGG | + | chr5_1:3550514-3550533 | Msa0711650:intron | 45.0% | |
| AGGGGGGACATATCTTAATG+GGG | + | chr5_1:3550515-3550534 | Msa0711650:intron | 45.0% | |
| GACTGGAGATATCCCTAGAA+AGG | + | chr5_1:3550855-3550874 | Msa0711650:intron | 45.0% | |
| CTACTTTCAACGAGGGGATT+GGG | - | chr5_1:3550903-3550922 | None:intergenic | 45.0% | |
| ACTACTTTCAACGAGGGGAT+TGG | - | chr5_1:3550904-3550923 | None:intergenic | 45.0% | |
| AATCCCCTCGTTGAAAGTAG+TGG | + | chr5_1:3550903-3550922 | Msa0711650:intron | 45.0% | |
| !! | CTTCATCCCATTTTGGCGTA+AGG | + | chr5_1:3550930-3550949 | Msa0711650:intron | 45.0% |
| TATACGAGGAGTGGAACTGA+AGG | - | chr5_1:3551015-3551034 | None:intergenic | 45.0% | |
| GAATCAGACTATACGAGGAG+TGG | - | chr5_1:3551024-3551043 | None:intergenic | 45.0% | |
| ATTCAGGGTTTCGAAAAGGC+AGG | - | chr5_1:3551483-3551502 | None:intergenic | 45.0% | |
| CCTGATTCAGGGTTTCGAAA+AGG | - | chr5_1:3551487-3551506 | None:intergenic | 45.0% | |
| ! | CCTTTTCGAAACCCTGAATC+AGG | + | chr5_1:3551484-3551503 | Msa0711650:exon | 45.0% |
| !!! | ATATAAATGATAATTAATTT+TGG | + | chr5_1:3545229-3545248 | Msa0711650:intron | 5.0% |
| !! | TAATTATTATAATAATAATG+AGG | + | chr5_1:3546540-3546559 | Msa0711650:intron | 5.0% |
| TGATCGTCGGTGATGTCTTC+GGG | - | chr5_1:3542942-3542961 | None:intergenic | 50.0% | |
| AGCAGAAGCGAAAACGGAAG+CGG | - | chr5_1:3542976-3542995 | None:intergenic | 50.0% | |
| TTCGGAGAAATACGCACCGT+TGG | + | chr5_1:3543118-3543137 | Msa0711650:CDS | 50.0% | |
| GTTGTGTCCATGGAGTGACA+TGG | + | chr5_1:3543556-3543575 | Msa0711650:intron | 50.0% | |
| CCGATTTCCATGTCACTCCA+TGG | - | chr5_1:3543566-3543585 | None:intergenic | 50.0% | |
| CTAACTCTGCGACAAGATCG+CGG | + | chr5_1:3543815-3543834 | Msa0711650:intron | 50.0% | |
| TAACTCTGCGACAAGATCGC+GGG | + | chr5_1:3543816-3543835 | Msa0711650:intron | 50.0% | |
| CCAACGAGGATAATTGCTGG+AGG | - | chr5_1:3544388-3544407 | None:intergenic | 50.0% | |
| CCTCCAGCAATTATCCTCGT+TGG | + | chr5_1:3544385-3544404 | Msa0711650:CDS | 50.0% | |
| GCCCATGTGAAGTTCAACGA+AGG | + | chr5_1:3544789-3544808 | Msa0711650:intron | 50.0% | |
| AGTCAGATGAAGGGAAGCTG+TGG | - | chr5_1:3544887-3544906 | None:intergenic | 50.0% | |
| TCCATCATCAAAGCATGGGG+GGG | + | chr5_1:3545286-3545305 | Msa0711650:intron | 50.0% | |
| CACAACAATCAACCCAGCCA+AGG | - | chr5_1:3545352-3545371 | None:intergenic | 50.0% | |
| !! | CTTGGCTGGGTTGATTGTTG+TGG | + | chr5_1:3545350-3545369 | Msa0711650:CDS | 50.0% |
| ATTGAATGGAGTGTGAGGGC+TGG | + | chr5_1:3545813-3545832 | Msa0711650:CDS | 50.0% | |
| TGGAACCAGCTTGTCCAGAT+TGG | - | chr5_1:3545981-3546000 | None:intergenic | 50.0% | |
| GCTACGATGGCAAACATTGG+GGG | - | chr5_1:3546201-3546220 | None:intergenic | 50.0% | |
| CGCCATGTGTCCCAAAAAAG+GGG | - | chr5_1:3546334-3546353 | None:intergenic | 50.0% | |
| CCGCCATGTGTCCCAAAAAA+GGG | - | chr5_1:3546335-3546354 | None:intergenic | 50.0% | |
| !!! | CCCTTTTTTGGGACACATGG+CGG | + | chr5_1:3546332-3546351 | Msa0711650:intron | 50.0% |
| TGGCGGCTTCTCAACATAGT+TGG | + | chr5_1:3546349-3546368 | Msa0711650:intron | 50.0% | |
| GGCGGCTTCTCAACATAGTT+GGG | + | chr5_1:3546350-3546369 | Msa0711650:intron | 50.0% | |
| ACCTGCTAGTGTAGGTCACA+AGG | - | chr5_1:3546749-3546768 | None:intergenic | 50.0% | |
| ! | AAAGCTCGTGGAAGCTTTGG+TGG | - | chr5_1:3546867-3546886 | None:intergenic | 50.0% |
| ACCAAAGCTTCCACGAGCTT+TGG | + | chr5_1:3546866-3546885 | Msa0711650:intron | 50.0% | |
| ACCAAAGCTCGTGGAAGCTT+TGG | - | chr5_1:3546870-3546889 | None:intergenic | 50.0% | |
| CCATGATAACCTCCATCTGC+AGG | - | chr5_1:3547202-3547221 | None:intergenic | 50.0% | |
| CCTGCAGATGGAGGTTATCA+TGG | + | chr5_1:3547199-3547218 | Msa0711650:intron | 50.0% | |
| ACACACAGGGCATGCTATTC+AGG | + | chr5_1:3548002-3548021 | Msa0711650:CDS | 50.0% | |
| CGACTCCATTAGGGCCTATT+TGG | - | chr5_1:3548177-3548196 | None:intergenic | 50.0% | |
| AATAGGCCCTAATGGAGTCG+TGG | + | chr5_1:3548177-3548196 | Msa0711650:CDS | 50.0% | |
| ! | CTGCCTCATCAGACTAGTTG+AGG | - | chr5_1:3548788-3548807 | None:intergenic | 50.0% |
| AAGCCCCCTCATACATATCC+TGG | - | chr5_1:3549455-3549474 | None:intergenic | 50.0% | |
| AAGGACTTAGGGTTGACCCT+TGG | - | chr5_1:3549539-3549558 | None:intergenic | 50.0% | |
| ! | TAGTCTTGCTTGGTGAGTCG+AGG | + | chr5_1:3549640-3549659 | Msa0711650:intron | 50.0% |
| ! | AGTCTTGCTTGGTGAGTCGA+GGG | + | chr5_1:3549641-3549660 | Msa0711650:intron | 50.0% |
| GAGTCGAGGGAGGAGTTAAA+CGG | + | chr5_1:3549654-3549673 | Msa0711650:intron | 50.0% | |
| AGTCGAGGGAGGAGTTAAAC+GGG | + | chr5_1:3549655-3549674 | Msa0711650:intron | 50.0% | |
| TAAACGGGAGGCTAGAGACT+TGG | + | chr5_1:3549670-3549689 | Msa0711650:intron | 50.0% | |
| ! | AGGCAAGCCTTAGAAGCGTA+TGG | + | chr5_1:3549693-3549712 | Msa0711650:intron | 50.0% |
| ACTCCGTCTTGCTTCTACTC+AGG | - | chr5_1:3549725-3549744 | None:intergenic | 50.0% | |
| GAGAAGTAGGTCTACCTTGG+AGG | + | chr5_1:3549770-3549789 | Msa0711650:intron | 50.0% | |
| GGACAGCAGGCAATGTTGTA+TGG | + | chr5_1:3549982-3550001 | Msa0711650:intron | 50.0% | |
| ! | AAGTAAGCGTAGCGGAGATG+AGG | + | chr5_1:3550043-3550062 | Msa0711650:intron | 50.0% |
| AGGATGTTGCGTTGGATGAG+TGG | + | chr5_1:3550063-3550082 | Msa0711650:intron | 50.0% | |
| CACCATTAGAGAGAGAGTGG+GGG | + | chr5_1:3550116-3550135 | Msa0711650:intron | 50.0% | |
| TACCCCCACTCTCTCTCTAA+TGG | - | chr5_1:3550121-3550140 | None:intergenic | 50.0% | |
| CTTCTTACAACGGCGTCTAC+GGG | - | chr5_1:3550209-3550228 | None:intergenic | 50.0% | |
| CTTATCCCACTATGTGGGGT+CGG | - | chr5_1:3550384-3550403 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTATG+TGG | - | chr5_1:3550390-3550409 | None:intergenic | 50.0% |
| ! | CCACATAGTGGGATAAGGCT+TGG | + | chr5_1:3550387-3550406 | Msa0711650:intron | 50.0% |
| AACCAAGAAAGGAACGAGGG+GGG | + | chr5_1:3550499-3550518 | Msa0711650:intron | 50.0% | |
| CGAGGGGGGACATATCTTAA+TGG | + | chr5_1:3550513-3550532 | Msa0711650:intron | 50.0% | |
| GTTTCGAAAAGGCAGGCTTG+GGG | - | chr5_1:3551476-3551495 | None:intergenic | 50.0% | |
| GGTTTCGAAAAGGCAGGCTT+GGG | - | chr5_1:3551477-3551496 | None:intergenic | 50.0% | |
| CGAAACCCTGAATCAGGTGT+TGG | + | chr5_1:3551490-3551509 | Msa0711650:exon | 50.0% | |
| GATCGTCGGTGATGTCTTCG+GGG | - | chr5_1:3542941-3542960 | None:intergenic | 55.0% | |
| GGGTTGTGGTGGTTGATCGT+CGG | - | chr5_1:3542955-3542974 | None:intergenic | 55.0% | |
| !! | AAAACGGAAGCGGGTTGTGG+TGG | - | chr5_1:3542966-3542985 | None:intergenic | 55.0% |
| GCAGAAGCGAAAACGGAAGC+GGG | - | chr5_1:3542975-3542994 | None:intergenic | 55.0% | |
| GAAAGCTAGGGTGGTTGCGA+TGG | + | chr5_1:3544132-3544151 | Msa0711650:CDS | 55.0% | |
| ! | GTGGTTGCGATGGACTTGAG+AGG | + | chr5_1:3544142-3544161 | Msa0711650:CDS | 55.0% |
| ! | GCGATGGACTTGAGAGGTCA+TGG | + | chr5_1:3544148-3544167 | Msa0711650:CDS | 55.0% |
| ! | GAAGGGAAGCTGTGGTGATG+AGG | - | chr5_1:3544879-3544898 | None:intergenic | 55.0% |
| ACCCCCCCATGCTTTGATGA+TGG | - | chr5_1:3545290-3545309 | None:intergenic | 55.0% | |
| GGGGGCCAAAATTGCTACGA+TGG | - | chr5_1:3546380-3546399 | None:intergenic | 55.0% | |
| !!! | GGCCCCTTTTTTGGGACACA+TGG | + | chr5_1:3546329-3546348 | Msa0711650:intron | 55.0% |
| GCCGCCATGTGTCCCAAAAA+AGG | - | chr5_1:3546336-3546355 | None:intergenic | 55.0% | |
| GCCTTGTGACCTACACTAGC+AGG | + | chr5_1:3546745-3546764 | Msa0711650:intron | 55.0% | |
| ! | AGCTTCCACGAGCTTTGGTC+AGG | + | chr5_1:3546871-3546890 | Msa0711650:intron | 55.0% |
| TCTGTCCTGACCAAAGCTCG+TGG | - | chr5_1:3546879-3546898 | None:intergenic | 55.0% | |
| CCATCTGCAGGACAGATGCA+AGG | - | chr5_1:3547190-3547209 | None:intergenic | 55.0% | |
| CCTTGCATCTGTCCTGCAGA+TGG | + | chr5_1:3547187-3547206 | Msa0711650:intron | 55.0% | |
| TGCATCTGTCCTGCAGATGG+AGG | + | chr5_1:3547190-3547209 | Msa0711650:intron | 55.0% | |
| GTGCTTCTTCTCCACTCGTC+TGG | - | chr5_1:3549090-3549109 | None:intergenic | 55.0% | |
| TATGCCTGGGAGGTCGACTA+TGG | + | chr5_1:3549263-3549282 | Msa0711650:intron | 55.0% | |
| ! | GACGCGTGATGGAGCGATAT+CGG | + | chr5_1:3549304-3549323 | Msa0711650:intron | 55.0% |
| ! | CGTGATGGAGCGATATCGGA+TGG | + | chr5_1:3549308-3549327 | Msa0711650:intron | 55.0% |
| CCTCACCCCTTTCTTCTCCA+AGG | - | chr5_1:3549412-3549431 | None:intergenic | 55.0% | |
| CCTTGGAGAAGAAAGGGGTG+AGG | + | chr5_1:3549409-3549428 | Msa0711650:intron | 55.0% | |
| TTCGACTAGTGTGAGGACGC+AGG | + | chr5_1:3549473-3549492 | Msa0711650:intron | 55.0% | |
| ACTAGTGTGAGGACGCAGGA+TGG | + | chr5_1:3549477-3549496 | Msa0711650:intron | 55.0% | |
| CTAGTGTGAGGACGCAGGAT+GGG | + | chr5_1:3549478-3549497 | Msa0711650:intron | 55.0% | |
| TAGTGTGAGGACGCAGGATG+GGG | + | chr5_1:3549479-3549498 | Msa0711650:intron | 55.0% | |
| GCGGAAGCCATACGCTTCTA+AGG | - | chr5_1:3549703-3549722 | None:intergenic | 55.0% | |
| CCGTCTTGCTTCTACTCAGG+CGG | - | chr5_1:3549722-3549741 | None:intergenic | 55.0% | |
| CCGCCTGAGTAGAAGCAAGA+CGG | + | chr5_1:3549719-3549738 | Msa0711650:intron | 55.0% | |
| GGAAGGTTCTATCGGACAGC+AGG | + | chr5_1:3549969-3549988 | Msa0711650:intron | 55.0% | |
| !! | GTATGGTACGGAGTGTTGGG+CGG | + | chr5_1:3549999-3550018 | Msa0711650:intron | 55.0% |
| CGGAGATGAGGATGTTGCGT+TGG | + | chr5_1:3550055-3550074 | Msa0711650:intron | 55.0% | |
| ACTATGTGGGGTCGGCTACA+TGG | - | chr5_1:3550376-3550395 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACATAG+TGG | + | chr5_1:3550375-3550394 | Msa0711650:intron | 55.0% | |
| TGTAGCCGACCCCACATAGT+GGG | + | chr5_1:3550376-3550395 | Msa0711650:intron | 55.0% | |
| ! | CGACCCCACATAGTGGGATA+AGG | + | chr5_1:3550382-3550401 | Msa0711650:intron | 55.0% |
| GGGTTTCGAAAAGGCAGGCT+TGG | - | chr5_1:3551478-3551497 | None:intergenic | 55.0% | |
| CAAGAACGGCAACTGCTGCT+GGG | + | chr5_1:3551519-3551538 | Msa0711650:three_prime_UTR | 55.0% | |
| CAACTGCTGCTGGGTGATGA+TGG | + | chr5_1:3551528-3551547 | Msa0711650:three_prime_UTR | 55.0% | |
| !! | GCGAAAACGGAAGCGGGTTG+TGG | - | chr5_1:3542969-3542988 | None:intergenic | 60.0% |
| ! | GGAAGCTGTGGTGATGAGGC+AGG | - | chr5_1:3544875-3544894 | None:intergenic | 60.0% |
| GCTTCCATAGTCGACCTCCC+AGG | - | chr5_1:3549270-3549289 | None:intergenic | 60.0% | |
| AGGGGGCTTCGACTAGTGTG+AGG | + | chr5_1:3549466-3549485 | Msa0711650:intron | 60.0% | |
| ! | CTTGCTTGGTGAGTCGAGGG+AGG | + | chr5_1:3549644-3549663 | Msa0711650:intron | 60.0% |
| CGAGGGAGGAGTTAAACGGG+AGG | + | chr5_1:3549658-3549677 | Msa0711650:intron | 60.0% | |
| ACGGGAGGCTAGAGACTTGG+AGG | + | chr5_1:3549673-3549692 | Msa0711650:intron | 60.0% | |
| GTCCCCCCTCGTTCCTTTCT+TGG | - | chr5_1:3550504-3550523 | None:intergenic | 60.0% | |
| TCGAAAAGGCAGGCTTGGGG+AGG | - | chr5_1:3551473-3551492 | None:intergenic | 60.0% | |
| CCAGCAGCAGTTGCCGTTCT+TGG | - | chr5_1:3551521-3551540 | None:intergenic | 60.0% | |
| CCAAGAACGGCAACTGCTGC+TGG | + | chr5_1:3551518-3551537 | Msa0711650:three_prime_UTR | 60.0% | |
| AAGGCAGGCTTGGGGAGGCC+AGG | - | chr5_1:3551468-3551487 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 3542700 | 3551868 | 3542700 | ID=Msa0711650;Name=Msa0711650 |
| chr5_1 | mRNA | 3542700 | 3551868 | 3542700 | ID=Msa0711650-mRNA-1;Parent=Msa0711650;Name=Msa0711650-mRNA-1;_AED=0.14;_eAED=0.15;_QI=212|0.8|0.90|1|1|1|11|368|297 |
| chr5_1 | exon | 3542700 | 3543015 | 3542700 | ID=Msa0711650-mRNA-1:exon:1306;Parent=Msa0711650-mRNA-1 |
| chr5_1 | exon | 3543112 | 3543204 | 3543112 | ID=Msa0711650-mRNA-1:exon:1307;Parent=Msa0711650-mRNA-1 |
| chr5_1 | exon | 3544096 | 3544210 | 3544096 | ID=Msa0711650-mRNA-1:exon:1308;Parent=Msa0711650-mRNA-1 |
| chr5_1 | exon | 3544334 | 3544413 | 3544334 | ID=Msa0711650-mRNA-1:exon:1309;Parent=Msa0711650-mRNA-1 |
| chr5_1 | exon | 3545299 | 3545383 | 3545299 | ID=Msa0711650-mRNA-1:exon:1310;Parent=Msa0711650-mRNA-1 |
| chr5_1 | exon | 3545813 | 3545907 | 3545813 | ID=Msa0711650-mRNA-1:exon:1311;Parent=Msa0711650-mRNA-1 |
| chr5_1 | exon | 3546050 | 3546100 | 3546050 | ID=Msa0711650-mRNA-1:exon:1312;Parent=Msa0711650-mRNA-1 |
| chr5_1 | exon | 3547448 | 3547528 | 3547448 | ID=Msa0711650-mRNA-1:exon:1313;Parent=Msa0711650-mRNA-1 |
| chr5_1 | exon | 3547951 | 3548023 | 3547951 | ID=Msa0711650-mRNA-1:exon:1314;Parent=Msa0711650-mRNA-1 |
| chr5_1 | exon | 3548121 | 3548198 | 3548121 | ID=Msa0711650-mRNA-1:exon:1315;Parent=Msa0711650-mRNA-1 |
| chr5_1 | exon | 3551462 | 3551868 | 3551462 | ID=Msa0711650-mRNA-1:exon:1316;Parent=Msa0711650-mRNA-1 |
| chr5_1 | five_prime_UTR | 3542700 | 3542911 | 3542700 | ID=Msa0711650-mRNA-1:five_prime_utr;Parent=Msa0711650-mRNA-1 |
| chr5_1 | CDS | 3542912 | 3543015 | 3542912 | ID=Msa0711650-mRNA-1:cds;Parent=Msa0711650-mRNA-1 |
| chr5_1 | CDS | 3543112 | 3543204 | 3543112 | ID=Msa0711650-mRNA-1:cds;Parent=Msa0711650-mRNA-1 |
| chr5_1 | CDS | 3544096 | 3544210 | 3544096 | ID=Msa0711650-mRNA-1:cds;Parent=Msa0711650-mRNA-1 |
| chr5_1 | CDS | 3544334 | 3544413 | 3544334 | ID=Msa0711650-mRNA-1:cds;Parent=Msa0711650-mRNA-1 |
| chr5_1 | CDS | 3545299 | 3545383 | 3545299 | ID=Msa0711650-mRNA-1:cds;Parent=Msa0711650-mRNA-1 |
| chr5_1 | CDS | 3545813 | 3545907 | 3545813 | ID=Msa0711650-mRNA-1:cds;Parent=Msa0711650-mRNA-1 |
| chr5_1 | CDS | 3546050 | 3546100 | 3546050 | ID=Msa0711650-mRNA-1:cds;Parent=Msa0711650-mRNA-1 |
| chr5_1 | CDS | 3547448 | 3547528 | 3547448 | ID=Msa0711650-mRNA-1:cds;Parent=Msa0711650-mRNA-1 |
| chr5_1 | CDS | 3547951 | 3548023 | 3547951 | ID=Msa0711650-mRNA-1:cds;Parent=Msa0711650-mRNA-1 |
| chr5_1 | CDS | 3548121 | 3548198 | 3548121 | ID=Msa0711650-mRNA-1:cds;Parent=Msa0711650-mRNA-1 |
| chr5_1 | CDS | 3551462 | 3551500 | 3551462 | ID=Msa0711650-mRNA-1:cds;Parent=Msa0711650-mRNA-1 |
| chr5_1 | three_prime_UTR | 3551501 | 3551868 | 3551501 | ID=Msa0711650-mRNA-1:three_prime_utr;Parent=Msa0711650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
