AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0842140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842140 MtrunA17_Chr5g0412061 93.511 601 13 2 1 580 1 596 0.0 1132
Msa0842140 MtrunA17_Chr5g0421541 94.737 171 9 0 402 572 1 171 1.82e-110 327
Msa0842140 MtrunA17_Chr4g0049801 34.036 617 324 19 25 574 11 611 4.34e-84 274
Msa0842140 MtrunA17_Chr2g0279641 34.483 435 231 10 42 425 67 498 1.39e-59 211
Msa0842140 MtrunA17_Chr2g0279641 30.663 362 190 16 255 574 419 761 3.55e-19 91.7
Msa0842140 MtrunA17_Chr3g0140741 28.526 631 331 19 46 580 55 661 7.98e-49 180
Msa0842140 MtrunA17_Chr3g0140741 30.719 153 89 5 42 189 331 471 2.93e-12 69.7
Msa0842140 MtrunA17_Chr4g0002241 36.313 358 199 8 77 428 54 388 2.26e-45 169
Msa0842140 MtrunA17_Chr4g0002241 30.723 166 97 5 42 204 246 396 3.85e-12 68.9
Msa0842140 MtrunA17_Chr4g0002241 44.186 86 46 2 490 574 514 598 2.43e-11 66.6
Msa0842140 MtrunA17_Chr2g0285771 26.109 586 363 14 42 574 61 629 1.76e-42 161
Msa0842140 MtrunA17_Chr2g0285771 22.561 328 208 8 251 543 34 350 3.49e-11 66.2
Msa0842140 MtrunA17_Chr8g0376551 25.325 616 338 14 42 576 59 633 1.02e-40 156
Msa0842140 MtrunA17_Chr3g0127051 25.258 582 369 16 42 578 82 642 3.51e-38 149
Msa0842140 MtrunA17_Chr3g0127051 31.285 179 107 5 261 425 65 241 3.16e-14 75.9
Msa0842140 MtrunA17_Chr6g0453421 30.500 400 256 10 42 430 66 454 7.79e-33 132
Msa0842140 MtrunA17_Chr6g0453421 28.497 193 124 4 260 442 48 236 3.56e-17 84.7
Msa0842140 MtrunA17_Chr7g0217681 30.370 405 256 10 42 430 68 462 2.00e-28 119
Msa0842140 MtrunA17_Chr7g0217681 28.889 180 115 3 260 426 50 229 2.38e-16 82.4
Msa0842140 MtrunA17_Chr5g0412011 100.000 47 0 0 534 580 5 51 2.84e-23 92.8
Msa0842140 MtrunA17_Chr5g0421531 79.167 48 5 1 1 48 1 43 7.07e-19 80.5
Msa0842140 MtrunA17_Chr7g0249721 30.986 213 132 5 242 442 83 292 9.21e-16 78.6
Msa0842140 MtrunA17_Chr4g0071791 26.575 365 243 9 230 574 16 375 4.13e-14 74.7
Msa0842140 MtrunA17_Chr4g0071791 34.459 148 79 3 42 180 63 201 5.34e-14 74.3
Msa0842140 MtrunA17_Chr2g0298721 29.714 175 120 3 260 432 71 244 3.36e-13 72.0
Msa0842140 MtrunA17_Chr2g0298721 32.432 148 82 4 42 180 89 227 9.54e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842140 AT2G22600.1 33.754 634 314 16 31 574 12 629 5.95e-90 290
Msa0842140 AT1G51580.1 30.556 612 323 16 42 579 38 621 2.26e-60 211
Msa0842140 AT1G51580.1 28.079 203 112 7 4 183 237 428 3.51e-11 66.6
Msa0842140 AT5G46190.1 26.568 606 349 18 42 576 63 643 3.62e-41 158
Msa0842140 AT5G46190.4 26.568 606 349 18 42 576 63 643 3.62e-41 158
Msa0842140 AT5G46190.3 26.568 606 349 18 42 576 63 643 3.62e-41 158
Msa0842140 AT5G15270.3 31.739 460 273 14 42 484 69 504 5.48e-40 153
Msa0842140 AT5G15270.3 33.143 175 107 3 260 426 51 223 1.23e-18 89.7
Msa0842140 AT5G15270.2 31.739 460 273 14 42 484 69 504 6.55e-40 153
Msa0842140 AT5G15270.2 33.143 175 107 3 260 426 51 223 1.30e-18 89.7
Msa0842140 AT5G15270.1 31.739 460 273 14 42 484 69 504 6.55e-40 153
Msa0842140 AT5G15270.1 33.143 175 107 3 260 426 51 223 1.30e-18 89.7
Msa0842140 AT5G53060.1 28.205 585 349 18 42 578 87 648 8.14e-40 154
Msa0842140 AT5G53060.1 27.273 341 209 12 261 576 70 396 4.85e-12 69.3
Msa0842140 AT5G46190.2 25.038 651 347 19 42 576 63 688 3.36e-34 138
Msa0842140 AT5G53060.3 28.641 412 251 11 42 425 87 483 3.30e-32 131
Msa0842140 AT5G53060.3 27.273 341 209 12 261 576 70 396 2.55e-12 70.1
Msa0842140 AT4G18375.2 24.623 597 342 19 42 576 55 605 8.85e-31 127
Msa0842140 AT5G64390.2 40.556 180 92 3 259 431 452 623 6.32e-28 119
Msa0842140 AT5G64390.2 35.088 171 93 3 42 198 66 232 2.00e-21 99.4
Msa0842140 AT5G64390.2 27.807 187 106 5 22 189 440 616 1.30e-13 74.7
Msa0842140 AT5G64390.1 40.556 180 92 3 259 431 452 623 7.80e-28 119
Msa0842140 AT5G64390.1 35.088 171 93 3 42 198 66 232 2.18e-21 99.4
Msa0842140 AT5G64390.1 56.977 86 36 1 495 580 765 849 2.64e-17 86.3
Msa0842140 AT5G64390.1 27.807 187 106 5 22 189 440 616 1.31e-13 74.7
Msa0842140 AT5G64390.3 40.556 180 92 3 259 431 452 623 8.32e-28 119
Msa0842140 AT5G64390.3 35.088 171 93 3 42 198 66 232 2.16e-21 99.4
Msa0842140 AT5G64390.3 57.143 84 35 1 497 580 776 858 9.07e-17 84.7
Msa0842140 AT5G64390.3 27.807 187 106 5 22 189 440 616 1.40e-13 74.3
Msa0842140 AT5G09560.1 26.531 441 247 11 42 425 49 469 2.72e-25 110
Msa0842140 AT1G14170.1 28.180 401 241 11 42 427 38 406 9.05e-22 99.0
Msa0842140 AT1G14170.2 28.321 399 239 11 42 425 30 396 9.06e-22 99.0
Msa0842140 AT1G14170.3 28.180 401 241 11 42 427 63 431 1.57e-21 98.6
Msa0842140 AT4G18375.3 23.937 447 268 12 42 440 55 477 3.25e-21 97.8
Msa0842140 AT4G26000.1 27.733 375 217 14 237 574 50 407 1.63e-16 83.2
Msa0842140 AT4G26000.1 32.432 148 82 4 42 180 93 231 1.36e-12 70.9
Msa0842140 AT4G18375.1 25.449 334 193 10 259 576 99 392 1.75e-16 82.0
Msa0842140 AT3G04610.3 32.530 166 107 4 260 423 164 326 1.62e-12 70.5
Msa0842140 AT3G04610.4 32.530 166 107 4 260 423 164 326 1.62e-12 70.5
Msa0842140 AT3G04610.2 32.530 166 107 4 260 423 188 350 1.79e-12 70.5
Msa0842140 AT3G04610.1 32.530 166 107 4 260 423 188 350 1.79e-12 70.5

Find 169 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCAATATTTATGGAATTT+TGG 0.121856 5_4:-19090470 Msa0842140:three_prime_UTR
GATATTTATGTTCATATTAT+TGG 0.130836 5_4:-19090618 Msa0842140:three_prime_UTR
CTAACAGTATCTTTATTTAA+AGG 0.143435 5_4:+19092354 None:intergenic
GACTGATGATAGGGTTATTT+TGG 0.147477 5_4:-19096023 Msa0842140:CDS
GTAAAATCACTTCTATAATT+AGG 0.149460 5_4:-19092431 Msa0842140:CDS
ATAATAGTGGTTCTAATATT+AGG 0.149891 5_4:-19095781 Msa0842140:CDS
CTGCAAATCCCCAATATTTA+TGG 0.200458 5_4:-19090478 Msa0842140:three_prime_UTR
TGTTTCTGGGACCAGATTTC+AGG 0.214487 5_4:-19091119 Msa0842140:intron
TGCCAAAATTCCATAAATAT+TGG 0.226264 5_4:+19090468 None:intergenic
GCCAAAATTCCATAAATATT+GGG 0.251115 5_4:+19090469 None:intergenic
GCTCCTGTTATACCGTTTAT+TGG 0.254127 5_4:-19090707 Msa0842140:three_prime_UTR
CATGTCTTTGGTTCTGTTTA+TGG 0.268455 5_4:-19091794 Msa0842140:CDS
GTGGTGGTGGTTGTGGGTGG+TGG 0.271313 5_4:+19096333 None:intergenic
ATTGTCTTTGCCCCTCCTTT+AGG 0.294721 5_4:-19094001 Msa0842140:CDS
TCCACTTGTACCGGTGCTGC+TGG 0.296182 5_4:+19091073 None:intergenic
TAAAATCACTTCTATAATTA+GGG 0.310912 5_4:-19092430 Msa0842140:CDS
AAGGACTGAAATGGAAGTTC+TGG 0.314127 5_4:+19090394 None:intergenic
GGAGGGAAGGTTGTGATATC+TGG 0.316287 5_4:-19091053 Msa0842140:CDS
ATTAAAAGCCTTGCAGTTAC+AGG 0.317637 5_4:+19093748 None:intergenic
TTGGCACATAGTTCTCAAAT+TGG 0.322433 5_4:-19095848 Msa0842140:CDS
TAATAGTGGTTCTAATATTA+GGG 0.324572 5_4:-19095780 Msa0842140:CDS
ATGCACAAGAAGGTGTTGTT+AGG 0.326843 5_4:-19095937 Msa0842140:CDS
TTTATAGAGTATGAGAAAAT+CGG 0.342301 5_4:-19090579 Msa0842140:three_prime_UTR
TAATTCATGGTTACCTTCAA+TGG 0.351322 5_4:-19094209 Msa0842140:CDS
TTGAAGGTAACCATGAATTA+AGG 0.351702 5_4:+19094212 None:intergenic
GGAAGAATATAAGTAATATT+AGG 0.355385 5_4:-19095805 Msa0842140:CDS
CGGTGGTTGGGACTGATGAT+AGG 0.355410 5_4:-19096033 Msa0842140:CDS
TGCTTCAGCAAGCACCTCAT+TGG 0.355641 5_4:+19092395 None:intergenic
ATAGTCTCAGAGCATGTCTT+TGG 0.359338 5_4:-19091806 Msa0842140:CDS
TTCAACGGCGGCGGAGAAAG+TGG 0.361395 5_4:+19096367 None:intergenic
GGATCGAAAAGGGATTGTTT+TGG 0.364192 5_4:-19095984 Msa0842140:CDS
CTCAAATTGGTGCTATTGTT+GGG 0.364258 5_4:-19095835 Msa0842140:CDS
ATAGATAAACCTTCCATTGA+AGG 0.366335 5_4:+19094196 None:intergenic
CTTTAAATAAAGATACTGTT+AGG 0.366560 5_4:-19092353 Msa0842140:CDS
TAAAGTTCTTCCTTCAAAAC+AGG 0.372152 5_4:-19090927 Msa0842140:three_prime_UTR
GGGGAAATGGTGAAGTTTAT+GGG 0.388390 5_4:-19095877 Msa0842140:CDS
TTATCTGAAGCATTAGGAAT+TGG 0.392353 5_4:+19093625 None:intergenic
TTGTTTGATTGACAGATAAC+TGG 0.399123 5_4:-19094385 Msa0842140:intron
ACAGATAACTGGTGAAAGTT+TGG 0.406589 5_4:-19094374 Msa0842140:intron
TTTGGGTTGATATATTTGTT+GGG 0.409454 5_4:-19090503 Msa0842140:three_prime_UTR
GTACCAATAAACGGTATAAC+AGG 0.411894 5_4:+19090704 None:intergenic
TCTCAAATTGGTGCTATTGT+TGG 0.413714 5_4:-19095836 Msa0842140:CDS
AGCATTGACTCAAAAGGTTC+CGG 0.414704 5_4:-19094130 Msa0842140:CDS
CAGGAGAATTACTTGATTCA+AGG 0.415861 5_4:+19093857 None:intergenic
AGACAATAGAAGCACCAGTT+TGG 0.418301 5_4:+19094017 None:intergenic
AGGGGTGTATCAAGCTAAAA+AGG 0.420188 5_4:-19092162 Msa0842140:CDS
GCTTCAGCAAGCACCTCATT+GGG 0.421293 5_4:+19092396 None:intergenic
TATTAACTGTCTCTCTTGAA+AGG 0.422015 5_4:-19090739 Msa0842140:three_prime_UTR
GTGGTGGTGGTGGTTGTGGG+TGG 0.422185 5_4:+19096330 None:intergenic
TCTGAAAACAACTGCGTGTC+CGG 0.426303 5_4:+19094111 None:intergenic
ACTGCGAGGATGCGGTGGTT+GGG 0.428519 5_4:-19096045 Msa0842140:CDS
TGTCACTTCAAATGATATGA+TGG 0.430523 5_4:-19090814 Msa0842140:three_prime_UTR
ATATGTACACCAACCACTAA+TGG 0.431634 5_4:+19090896 None:intergenic
CTTGTATATTTGCAGAATGC+AGG 0.433629 5_4:-19092182 Msa0842140:intron
TCTCAGCTCCGGCGAGAAAC+CGG 0.437451 5_4:-19096079 Msa0842140:CDS
GCTGAAGATCACATTCGAAA+TGG 0.439609 5_4:-19093799 Msa0842140:CDS
TTGCACTATGTGAATTTGAT+TGG 0.440573 5_4:-19090443 Msa0842140:three_prime_UTR
AAGATCCTCATGTGTGTAAG+AGG 0.441328 5_4:+19094243 None:intergenic
ACATCATTATCTGAAGCATT+AGG 0.450838 5_4:+19093619 None:intergenic
CAAAATGTGTGTTAGTCTAC+AGG 0.456453 5_4:+19090785 None:intergenic
CACCACCGTCGTCGTTGAAA+AGG 0.457109 5_4:-19096313 Msa0842140:CDS
CACTGCGAGGATGCGGTGGT+TGG 0.458500 5_4:-19096046 Msa0842140:CDS
CATTTATTGACTGGTAATGA+AGG 0.460032 5_4:-19093709 Msa0842140:CDS
GGGTCGATGTCGGATCGAAA+AGG 0.463768 5_4:-19095995 Msa0842140:CDS
CGCTCTTCATACTGACCTAA+AGG 0.469766 5_4:+19093986 None:intergenic
AAAATGATGGTACCAATAAA+CGG 0.470396 5_4:+19090695 None:intergenic
ATTGACTGGTAATGAAGGTC+AGG 0.471664 5_4:-19093704 Msa0842140:CDS
TCTTTATTTAAAGGAAAACT+TGG 0.475566 5_4:+19092363 None:intergenic
ACAGGAGGAGGTGCCATTAG+TGG 0.480446 5_4:-19090909 Msa0842140:three_prime_UTR
GGTTCTGTTTATGGTGAAGA+TGG 0.482448 5_4:-19091785 Msa0842140:CDS
TCAACGGCGGCGGAGAAAGT+GGG 0.487788 5_4:+19096368 None:intergenic
AGTAATATTAGGAATAATAG+TGG 0.489092 5_4:-19095794 Msa0842140:CDS
GGTCGATGTCGGATCGAAAA+GGG 0.489118 5_4:-19095994 Msa0842140:CDS
ATTAACTGTCTCTCTTGAAA+GGG 0.490662 5_4:-19090738 Msa0842140:three_prime_UTR
TGCACAAGAAGGTGTTGTTA+GGG 0.491683 5_4:-19095936 Msa0842140:CDS
GTGCTATTGTTGGGAAAGGA+GGG 0.492024 5_4:-19095826 Msa0842140:CDS
ACCCGGTAGAAGTTTGAAAA+CGG 0.492942 5_4:+19096274 None:intergenic
CCCGGTAGAAGTTTGAAAAC+GGG 0.493933 5_4:+19096275 None:intergenic
TTCACGCTCGATGTGAAGGC+GGG 0.499168 5_4:-19090549 Msa0842140:three_prime_UTR
AACTCTAGCATTGACTCAAA+AGG 0.499637 5_4:-19094136 Msa0842140:CDS
GGTGCTATTGTTGGGAAAGG+AGG 0.500865 5_4:-19095827 Msa0842140:CDS
AGCACGTTACATTTATTGAC+TGG 0.502822 5_4:-19093718 Msa0842140:CDS
TGAGCTGCAAATGTTTGATC+AGG 0.504272 5_4:+19091026 None:intergenic
TTGTGGGTGGTGGTGATCAG+TGG 0.505493 5_4:+19096343 None:intergenic
CTAGTTCACGCTCGATGTGA+AGG 0.507348 5_4:-19090553 Msa0842140:three_prime_UTR
TTCAACGACGACGGTGGTGG+TGG 0.507588 5_4:+19096317 None:intergenic
CCACTTGTACCGGTGCTGCT+GGG 0.508804 5_4:+19091074 None:intergenic
CAACTATTAAGTCGTCTGAT+AGG 0.509091 5_4:-19094270 Msa0842140:CDS
TGTGGTAGAAACCTCGCAAA+AGG 0.510464 5_4:+19092297 None:intergenic
GGTGATTCCACAGCAGTAGC+TGG 0.515008 5_4:+19093769 None:intergenic
CAATTTAGATCGAATTAGAC+AGG 0.516065 5_4:-19091759 Msa0842140:intron
CCAAAATTCCATAAATATTG+GGG 0.517262 5_4:+19090470 None:intergenic
TACGAATTTAATTGAGAATG+TGG 0.522029 5_4:-19092117 Msa0842140:CDS
AACCTCGCAAAAGGAAAAGA+AGG 0.524946 5_4:+19092306 None:intergenic
TCTTCAAGATTGTCCACCGA+TGG 0.525660 5_4:-19094317 Msa0842140:CDS
AACGACGACGGTGGTGGTGG+TGG 0.525846 5_4:+19096320 None:intergenic
TTGTATATTTGCAGAATGCA+GGG 0.526025 5_4:-19092181 Msa0842140:intron
CAAAATCCACTGCGAGGATG+CGG 0.528018 5_4:-19096053 Msa0842140:CDS
GGTCAATCGTTTCTCAGCTC+CGG 0.528256 5_4:-19096090 Msa0842140:CDS
AGATAATGATGTGGTAGTCC+AGG 0.528924 5_4:-19093608 Msa0842140:intron
TCATGGTTACCTTCAATGGA+AGG 0.529880 5_4:-19094205 Msa0842140:CDS
AGCAGCACCGGTACAAGTGG+AGG 0.530406 5_4:-19091071 Msa0842140:CDS
TTTGGGTGATAGGGAAATGG+AGG 0.531899 5_4:-19095966 Msa0842140:CDS
TGAAGTTTATGGGAAATTGT+TGG 0.532182 5_4:-19095867 Msa0842140:CDS
TAATATTATTCACAAGTTGA+AGG 0.532533 5_4:+19090854 None:intergenic
AACCTTCCCTCCACTTGTAC+CGG 0.534868 5_4:+19091064 None:intergenic
AGATATTTCATGCAGATCAC+TGG 0.535144 5_4:-19092483 Msa0842140:intron
TTGAGAATGTGGAACCTGGC+AGG 0.535373 5_4:-19092106 Msa0842140:intron
CGGTATAACAGGAGCTTCCA+CGG 0.539075 5_4:+19090715 None:intergenic
ATCAGTGGTTTCAACGGCGG+CGG 0.541422 5_4:+19096358 None:intergenic
TAAGTCTAGGAGCAAAATGA+TGG 0.542255 5_4:+19090682 None:intergenic
CTATCAGACGACTTAATAGT+TGG 0.545271 5_4:+19094271 None:intergenic
CAGAATTGAGAGAAGTGAGT+GGG 0.546377 5_4:-19093675 Msa0842140:CDS
TTTGGTAATTGGGTCGATGT+CGG 0.546404 5_4:-19096005 Msa0842140:CDS
AAACTGCACAAGCAAGCTGA+TGG 0.546668 5_4:-19090980 Msa0842140:exon
TCTTCCTTCAAAACAGGAGG+AGG 0.549693 5_4:-19090921 Msa0842140:three_prime_UTR
CCCAGCAGCACCGGTACAAG+TGG 0.551623 5_4:-19091074 Msa0842140:CDS
TGTCTCTCTTGAAAGGGCCG+TGG 0.556413 5_4:-19090732 Msa0842140:three_prime_UTR
ATTGGTGCTATTGTTGGGAA+AGG 0.556516 5_4:-19095830 Msa0842140:CDS
CTTCAAGATTGTCCACCGAT+GGG 0.558317 5_4:-19094316 Msa0842140:CDS
CTTTGCTCTAACAACGTAGC+TGG 0.559142 5_4:-19094085 Msa0842140:CDS
TTAGCAGCACAATGTGGAGC+AGG 0.560665 5_4:+19095752 None:intergenic
AACGTAGCTGGTAGTGTGAT+CGG 0.561462 5_4:-19094073 Msa0842140:CDS
AGTTCTTCCTTCAAAACAGG+AGG 0.563223 5_4:-19090924 Msa0842140:three_prime_UTR
AGAATAACAGCATCTTGTGC+AGG 0.563491 5_4:+19093838 None:intergenic
TTCAAAGATACTTTGCCCAT+CGG 0.567264 5_4:+19094301 None:intergenic
TTAATTGAGAATGTGGAACC+TGG 0.569671 5_4:-19092110 Msa0842140:CDS
AAAGATACTTTGCCCATCGG+TGG 0.569779 5_4:+19094304 None:intergenic
GTTCACGCTCGATGTGAAGG+CGG 0.570979 5_4:-19090550 Msa0842140:three_prime_UTR
CTGGATTATACTGACCTGCC+AGG 0.574862 5_4:+19092092 None:intergenic
TGCACAAGCAAGCTGATGGA+TGG 0.576534 5_4:-19090976 Msa0842140:exon
CACCGGTACAAGTGGAGGGA+AGG 0.577288 5_4:-19091066 Msa0842140:CDS
GGGGCTTGAAAGTGAGAAAG+GGG 0.582131 5_4:-19095897 Msa0842140:CDS
GTGGTGATCAGTGGTTTCAA+CGG 0.585651 5_4:+19096352 None:intergenic
GGTGGTTGGGACTGATGATA+GGG 0.586312 5_4:-19096032 Msa0842140:CDS
GGATAATCCTTTGCCCAATG+AGG 0.589112 5_4:-19092409 Msa0842140:CDS
CAAGCAAGCTGATGGATGGA+TGG 0.593818 5_4:-19090972 Msa0842140:exon
TATTTCATGCAGATCACTGG+TGG 0.600462 5_4:-19092480 Msa0842140:intron
AATCCACTGCGAGGATGCGG+TGG 0.602490 5_4:-19096050 Msa0842140:CDS
GCAAGCACCTCATTGGGCAA+AGG 0.602618 5_4:+19092402 None:intergenic
CTTCATACTGACCTAAAGGA+GGG 0.604930 5_4:+19093990 None:intergenic
CAACGGCGGCGGAGAAAGTG+GGG 0.607389 5_4:+19096369 None:intergenic
GCAGCACCGGTACAAGTGGA+GGG 0.608583 5_4:-19091070 Msa0842140:CDS
AAACAGACAACAAACGCTAA+CGG 0.610851 5_4:-19094160 Msa0842140:CDS
GCTGATATTCAACTACTGCA+TGG 0.611060 5_4:-19093652 Msa0842140:CDS
TCAGACGACTTAATAGTTGG+CGG 0.616643 5_4:+19094274 None:intergenic
GAGGAGGTGCCATTAGTGGT+TGG 0.618086 5_4:-19090905 Msa0842140:three_prime_UTR
GAGGTTTCTAATGCACAAGA+AGG 0.618108 5_4:-19095947 Msa0842140:CDS
TTCATACTGACCTAAAGGAG+GGG 0.624269 5_4:+19093991 None:intergenic
TCTTCATACTGACCTAAAGG+AGG 0.626783 5_4:+19093989 None:intergenic
GTATTTGATCCCAGCAGCAC+CGG 0.627371 5_4:-19091083 Msa0842140:CDS
CAACCACCGCATCCTCGCAG+TGG 0.627904 5_4:+19096047 None:intergenic
TGGAATCACCTGTAACTGCA+AGG 0.641556 5_4:-19093756 Msa0842140:CDS
GTGATCAGTGGTTTCAACGG+CGG 0.644192 5_4:+19096355 None:intergenic
CACAGTAGTGTTTGTCACAG+TGG 0.644717 5_4:+19091835 None:intergenic
GTCAACCTCTTACACACATG+AGG 0.644733 5_4:-19094248 Msa0842140:CDS
TGTATATTTGCAGAATGCAG+GGG 0.651347 5_4:-19092180 Msa0842140:intron
GGTAACCATGAATTAAGGTG+AGG 0.652162 5_4:+19094217 None:intergenic
ACATTGTGCTGCTAAAGATG+AGG 0.653944 5_4:-19095744 Msa0842140:CDS
ATTTCAGCCAGCTACTGCTG+TGG 0.660389 5_4:-19093776 Msa0842140:CDS
TCTGTTTATGGTGAAGATGG+CGG 0.667726 5_4:-19091782 Msa0842140:CDS
TCAGAATTGAGAGAAGTGAG+TGG 0.669570 5_4:-19093676 Msa0842140:CDS
AGAATTGAGAGAAGTGAGTG+GGG 0.684487 5_4:-19093674 Msa0842140:CDS
TCATCTTTAGCAGCACAATG+TGG 0.684738 5_4:+19095746 None:intergenic
TAATGCTTCAGATAATGATG+TGG 0.688915 5_4:-19093617 Msa0842140:CDS
AATGTGTGTTAGTCTACAGG+AGG 0.692029 5_4:+19090788 None:intergenic
GGGCTTGAAAGTGAGAAAGG+GGG 0.707750 5_4:-19095896 Msa0842140:CDS
CGGATGCAAAATCCACTGCG+AGG 0.717160 5_4:-19096059 Msa0842140:CDS
CACTGTGACAAACACTACTG+TGG 0.721006 5_4:-19091834 Msa0842140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTA+AGG - chr5_4:19093240-19093259 Msa0842140:intron 0.0%
!!! TTTTTCATACAAAATTTTTA+AGG + chr5_4:19091267-19091286 None:intergenic 10.0%
!!! TTAAAAATTTTGTATGAAAA+AGG - chr5_4:19091266-19091285 Msa0842140:intron 10.0%
!!! TGTTATTTTATTTTTTTTGA+AGG + chr5_4:19091920-19091939 None:intergenic 10.0%
!! TATTATTATTATGAGAAATT+TGG - chr5_4:19092021-19092040 Msa0842140:intron 10.0%
!! ATTATTATTATGAGAAATTT+GGG - chr5_4:19092022-19092041 Msa0842140:intron 10.0%
!!! AAGTATTATGTTTTTATTAA+TGG - chr5_4:19092080-19092099 Msa0842140:intron 10.0%
!! AAACAGTTTAAATATAAAAA+GGG + chr5_4:19095370-19095389 None:intergenic 10.0%
!! TAAACAGTTTAAATATAAAA+AGG + chr5_4:19095371-19095390 None:intergenic 10.0%
!!! GTATTTAAAACTTTTTTACA+CGG - chr5_4:19091107-19091126 Msa0842140:CDS 15.0%
!! TTAGTAATTAGTTATTAGAT+TGG - chr5_4:19091145-19091164 Msa0842140:intron 15.0%
!!! AAATATTTAGAGATATTTTG+TGG - chr5_4:19091237-19091256 Msa0842140:intron 15.0%
!! TATTACTATTTGTTCTTATT+AGG - chr5_4:19091358-19091377 Msa0842140:intron 15.0%
!!! TATATCTATGATTTGTTATA+CGG - chr5_4:19091777-19091796 Msa0842140:CDS 15.0%
!! AGATCAATAATAGAAAATTA+TGG + chr5_4:19092877-19092896 None:intergenic 15.0%
!!! AAATGTACATAAATTGTTTT+CGG + chr5_4:19093625-19093644 None:intergenic 15.0%
!!! TACTTTTAAGTATTTTATTG+AGG + chr5_4:19093724-19093743 None:intergenic 15.0%
!! TAAAATCACTTCTATAATTA+GGG - chr5_4:19094347-19094366 Msa0842140:CDS 15.0%
!! TACATAAAATAATATATTGC+TGG - chr5_4:19094820-19094839 Msa0842140:intron 15.0%
!! ATAATACTAATACAAATGAA+AGG - chr5_4:19095413-19095432 Msa0842140:intron 15.0%
!! TAGATTGTATTTATTGTATT+TGG - chr5_4:19095463-19095482 Msa0842140:intron 15.0%
!! AGATTGTATTTATTGTATTT+GGG - chr5_4:19095464-19095483 Msa0842140:intron 15.0%
!!! TTTTATTTGTATAAGGATTA+TGG - chr5_4:19095592-19095611 Msa0842140:intron 15.0%
!! GATATTTATGTTCATATTAT+TGG - chr5_4:19096159-19096178 Msa0842140:intron 15.0%
!!! AGTTTTATTTTGAATCTTTT+GGG - chr5_4:19096257-19096276 Msa0842140:intron 15.0%
!! GGAAGAATATAAGTAATATT+AGG - chr5_4:19090972-19090991 Msa0842140:exon 20.0%
!! AGTAATATTAGGAATAATAG+TGG - chr5_4:19090983-19091002 Msa0842140:CDS 20.0%
!!! ATAATAGTGGTTCTAATATT+AGG - chr5_4:19090996-19091015 Msa0842140:CDS 20.0%
!!! TAATAGTGGTTCTAATATTA+GGG - chr5_4:19090997-19091016 Msa0842140:CDS 20.0%
!! TATCTCTAAATATTTACTAG+TGG + chr5_4:19091232-19091251 None:intergenic 20.0%
!! GTAATGACATTGAAAAATAA+CGG + chr5_4:19091529-19091548 None:intergenic 20.0%
!! TTTGAGGAAAAATAAAATCA+GGG + chr5_4:19091636-19091655 None:intergenic 20.0%
!!! TATTTTGAAATCGATAGTAT+CGG + chr5_4:19091705-19091724 None:intergenic 20.0%
!!! AATTTTCAATCTTAACCAAA+AGG + chr5_4:19091857-19091876 None:intergenic 20.0%
!! AGAAAAATCAATAAAATGTG+CGG + chr5_4:19091957-19091976 None:intergenic 20.0%
!! TGTATGTTATAAAAGTGAAT+TGG - chr5_4:19092160-19092179 Msa0842140:CDS 20.0%
!!! TGAATTGGAACTTTAATTTT+GGG - chr5_4:19092175-19092194 Msa0842140:intron 20.0%
!! TAATATTCTTGTTCTTTATC+TGG - chr5_4:19092365-19092384 Msa0842140:CDS 20.0%
!! AATATTCTTGTTCTTTATCT+GGG - chr5_4:19092366-19092385 Msa0842140:CDS 20.0%
!! TTGCTTAATTTCCAATTTAA+AGG - chr5_4:19093374-19093393 Msa0842140:intron 20.0%
!! CATATTAAAGACCTTTAAAT+TGG + chr5_4:19093388-19093407 None:intergenic 20.0%
!! CAATTTAAAGGTCTTTAATA+TGG - chr5_4:19093386-19093405 Msa0842140:intron 20.0%
!! GAAATATATTTGTGTAAGTT+AGG + chr5_4:19093448-19093467 None:intergenic 20.0%
!! AACTTACACAAATATATTTC+AGG - chr5_4:19093448-19093467 Msa0842140:intron 20.0%
!! GTAAAATCACTTCTATAATT+AGG - chr5_4:19094346-19094365 Msa0842140:CDS 20.0%
!!! TCTTTATTTAAAGGAAAACT+TGG + chr5_4:19094417-19094436 None:intergenic 20.0%
!!! CTAACAGTATCTTTATTTAA+AGG + chr5_4:19094426-19094445 None:intergenic 20.0%
!! CTTTAAATAAAGATACTGTT+AGG - chr5_4:19094424-19094443 Msa0842140:intron 20.0%
!! AAAGATGGTTAAAATAAAGA+AGG + chr5_4:19094517-19094536 None:intergenic 20.0%
!! TGTAATAGAATATCAAAAGA+TGG + chr5_4:19094532-19094551 None:intergenic 20.0%
!! AATTCATAACATCTTTCTAA+GGG + chr5_4:19095060-19095079 None:intergenic 20.0%
!! TAATTCATAACATCTTTCTA+AGG + chr5_4:19095061-19095080 None:intergenic 20.0%
!!! AGTGCTAATGATTTTAATTA+AGG - chr5_4:19095172-19095191 Msa0842140:intron 20.0%
!!! CTAATGATTTTAATTAAGGT+CGG - chr5_4:19095176-19095195 Msa0842140:intron 20.0%
!! ACTGTAACTTCAAAAAATTT+AGG - chr5_4:19095261-19095280 Msa0842140:intron 20.0%
!! CTGTAACTTCAAAAAATTTA+GGG - chr5_4:19095262-19095281 Msa0842140:intron 20.0%
!!! TCAAAAAATTTAGGGAATTT+TGG - chr5_4:19095270-19095289 Msa0842140:intron 20.0%
!!! ATTTATTGTATTTGGGATTA+TGG - chr5_4:19095471-19095490 Msa0842140:intron 20.0%
!!! TAATATTATTCACAAGTTGA+AGG + chr5_4:19095926-19095945 None:intergenic 20.0%
!!! GAACTTTTAAAAATAAGTCT+AGG + chr5_4:19096111-19096130 None:intergenic 20.0%
!! TTTATAGAGTATGAGAAAAT+CGG - chr5_4:19096198-19096217 Msa0842140:intron 20.0%
!!! GAGTTTTATTTTGAATCTTT+TGG - chr5_4:19096256-19096275 Msa0842140:intron 20.0%
!!! ATAGGGTTATTTTGGTAATT+GGG - chr5_4:19090762-19090781 Msa0842140:three_prime_UTR 25.0%
! GTAATTAGTTATTAGATTGG+CGG - chr5_4:19091148-19091167 Msa0842140:intron 25.0%
! CTAAATATTTACTAGTGGTT+GGG + chr5_4:19091227-19091246 None:intergenic 25.0%
! TCTAAATATTTACTAGTGGT+TGG + chr5_4:19091228-19091247 None:intergenic 25.0%
! TTGAGGAAAAATAAAATCAG+GGG + chr5_4:19091635-19091654 None:intergenic 25.0%
!! CTTTGAGGAAAAATAAAATC+AGG + chr5_4:19091637-19091656 None:intergenic 25.0%
!!! TCAAACTTTTGATTTCTTTG+AGG + chr5_4:19091652-19091671 None:intergenic 25.0%
! TCAAAATACATTCGTAAAAG+TGG - chr5_4:19091717-19091736 Msa0842140:intron 25.0%
!!! ATATTTTTTTCCTCAATCGT+TGG - chr5_4:19091823-19091842 Msa0842140:CDS 25.0%
! CTTATAAAAGTCCTTAAGAA+AGG - chr5_4:19091975-19091994 Msa0842140:intron 25.0%
!! ATTATGAGAAATTTGGGATA+AGG - chr5_4:19092028-19092047 Msa0842140:intron 25.0%
!!! CTTGTTTTCTTCCTATATTT+TGG - chr5_4:19092119-19092138 Msa0842140:CDS 25.0%
!! TGATTTTCATGCCAAAATAT+AGG + chr5_4:19092133-19092152 None:intergenic 25.0%
!!! TCACTTTTATAACATACACA+TGG + chr5_4:19092158-19092177 None:intergenic 25.0%
!!! GTGAATTGGAACTTTAATTT+TGG - chr5_4:19092174-19092193 Msa0842140:intron 25.0%
!!! AACTTTAATTTTGGGATTGT+AGG - chr5_4:19092183-19092202 Msa0842140:intron 25.0%
! ATAAATTAGAATGAGGAAAC+TGG - chr5_4:19092221-19092240 Msa0842140:intron 25.0%
! GTTAAATCAGTATAGACATT+CGG + chr5_4:19092285-19092304 None:intergenic 25.0%
!! AAGTTATCCTTTTATCATGA+AGG + chr5_4:19093347-19093366 None:intergenic 25.0%
! GGAAAACAGTTAATTATACT+TGG - chr5_4:19093407-19093426 Msa0842140:intron 25.0%
!!! TTTATTTTCATAAGCTTTCC+AGG + chr5_4:19093602-19093621 None:intergenic 25.0%
!! TATTTTATTGAGGATCTGTT+TGG + chr5_4:19093714-19093733 None:intergenic 25.0%
! ATACAGAAGCAGATATAATA+AGG + chr5_4:19093845-19093864 None:intergenic 25.0%
! ATTTACATTCTTAACTAAGC+TGG + chr5_4:19093892-19093911 None:intergenic 25.0%
!! AATAAGTTGAAAACAACGTA+TGG - chr5_4:19094139-19094158 Msa0842140:CDS 25.0%
! AAACAGTAAGAAAAGATTGT+CGG + chr5_4:19094251-19094270 None:intergenic 25.0%
! TACGAATTTAATTGAGAATG+TGG - chr5_4:19094660-19094679 Msa0842140:intron 25.0%
!! TAAGATTTTACTAAGGGAAA+GGG + chr5_4:19094744-19094763 None:intergenic 25.0%
!!! GGAATCTAAGATTTTACTAA+GGG + chr5_4:19094750-19094769 None:intergenic 25.0%
!!! AGGAATCTAAGATTTTACTA+AGG + chr5_4:19094751-19094770 None:intergenic 25.0%
! CTTCTACATCTAATGATTAT+AGG + chr5_4:19094771-19094790 None:intergenic 25.0%
! GTGAATATTTATTATGCCAT+TGG + chr5_4:19094794-19094813 None:intergenic 25.0%
!! AAGATTTTACCAAAACAGAA+AGG + chr5_4:19094901-19094920 None:intergenic 25.0%
!!! TCTGTTTTGGTAAAATCTTT+CGG - chr5_4:19094902-19094921 Msa0842140:intron 25.0%
! TAAACTTTCTTCTGAGTATT+TGG - chr5_4:19095114-19095133 Msa0842140:intron 25.0%
! TTTGAATCATTTGATCATTG+TGG - chr5_4:19095142-19095161 Msa0842140:intron 25.0%
! TAATTAAGGTCGGAAAAAAA+AGG - chr5_4:19095186-19095205 Msa0842140:intron 25.0%
! TTTCATGTTGTTACATTTGT+TGG - chr5_4:19095237-19095256 Msa0842140:intron 25.0%
! TTGCACTATGTGAAATTTAT+TGG - chr5_4:19095299-19095318 Msa0842140:intron 25.0%
! CAAAGTCTAAACTTTGATAA+TGG + chr5_4:19095325-19095344 None:intergenic 25.0%
! CATTATCAAAGTTTAGACTT+TGG - chr5_4:19095323-19095342 Msa0842140:intron 25.0%
!!! ATATGTTCTAATGTTGTTTC+TGG - chr5_4:19095644-19095663 Msa0842140:intron 25.0%
!!! TATGTTCTAATGTTGTTTCT+GGG - chr5_4:19095645-19095664 Msa0842140:intron 25.0%
!! ACACACATTTTGTTAGATTT+CGG - chr5_4:19096003-19096022 Msa0842140:CDS 25.0%
! AAAATGATGGTACCAATAAA+CGG + chr5_4:19096085-19096104 None:intergenic 25.0%
!!! TTTTGGGTTGATATATTTGT+TGG - chr5_4:19096273-19096292 Msa0842140:intron 25.0%
!!! TTTGGGTTGATATATTTGTT+GGG - chr5_4:19096274-19096293 Msa0842140:intron 25.0%
! CCAAAATTCCATAAATATTG+GGG + chr5_4:19096310-19096329 None:intergenic 25.0%
! GCCAAAATTCCATAAATATT+GGG + chr5_4:19096311-19096330 None:intergenic 25.0%
! TGCCAAAATTCCATAAATAT+TGG + chr5_4:19096312-19096331 None:intergenic 25.0%
!!! GATAGGGTTATTTTGGTAAT+TGG - chr5_4:19090761-19090780 Msa0842140:three_prime_UTR 30.0%
! TGTTGTTAGGGTTTTTGATA+GGG - chr5_4:19090853-19090872 Msa0842140:three_prime_UTR 30.0%
TGAAGTTTATGGGAAATTGT+TGG - chr5_4:19090910-19090929 Msa0842140:three_prime_UTR 30.0%
CTATTTGTTCTTATTAGGCA+CGG - chr5_4:19091363-19091382 Msa0842140:intron 30.0%
CCTAACATTGAATTTCATGT+CGG + chr5_4:19091506-19091525 None:intergenic 30.0%
AATCAAAAGTTTGAACCCTT+TGG - chr5_4:19091658-19091677 Msa0842140:intron 30.0%
ATCAAAAGTTTGAACCCTTT+GGG - chr5_4:19091659-19091678 Msa0842140:intron 30.0%
ATAACCAATCTCCTTTCTTA+AGG + chr5_4:19091989-19092008 None:intergenic 30.0%
AAGGATTCATTCATACTAAG+TGG - chr5_4:19092047-19092066 Msa0842140:intron 30.0%
CCTCATTCTAATTTATCACA+CGG + chr5_4:19092217-19092236 None:intergenic 30.0%
ATGACAGATCAGATTTAATC+TGG + chr5_4:19092258-19092277 None:intergenic 30.0%
TCAGTTCAATGATAAGTGAA+AGG + chr5_4:19092340-19092359 None:intergenic 30.0%
TTGTTTGATTGACAGATAAC+TGG - chr5_4:19092392-19092411 Msa0842140:CDS 30.0%
! TTTTTCCTCACCTTAATTCA+TGG - chr5_4:19092555-19092574 Msa0842140:intron 30.0%
TTGAAGGTAACCATGAATTA+AGG + chr5_4:19092568-19092587 None:intergenic 30.0%
TAATTCATGGTTACCTTCAA+TGG - chr5_4:19092568-19092587 Msa0842140:intron 30.0%
ATAGATAAACCTTCCATTGA+AGG + chr5_4:19092584-19092603 None:intergenic 30.0%
!!! AGAACTTTTGAAATCCAAAC+TGG - chr5_4:19092746-19092765 Msa0842140:intron 30.0%
AATTACTTGATTCAAGGTTC+TGG + chr5_4:19092917-19092936 None:intergenic 30.0%
! CATTTATTGACTGGTAATGA+AGG - chr5_4:19093068-19093087 Msa0842140:intron 30.0%
! TTATCTGAAGCATTAGGAAT+TGG + chr5_4:19093155-19093174 None:intergenic 30.0%
! ACATCATTATCTGAAGCATT+AGG + chr5_4:19093161-19093180 None:intergenic 30.0%
TAATGCTTCAGATAATGATG+TGG - chr5_4:19093160-19093179 Msa0842140:intron 30.0%
ACAAGATACATAATTGTACC+TGG + chr5_4:19093190-19093209 None:intergenic 30.0%
CTGATATCCTTCATGATAAA+AGG - chr5_4:19093337-19093356 Msa0842140:intron 30.0%
! AATATATTTCAGGTCCTGTT+TGG - chr5_4:19093458-19093477 Msa0842140:intron 30.0%
ATTGAACTGTTTATCCAAAC+AGG + chr5_4:19093475-19093494 None:intergenic 30.0%
! AGCTTTTATATAAGCTATCC+TGG - chr5_4:19093581-19093600 Msa0842140:intron 30.0%
ATTTCATAAGCTGTTTGCAT+AGG - chr5_4:19093641-19093660 Msa0842140:CDS 30.0%
AGCTATTGTATCCAACATAA+AGG - chr5_4:19093750-19093769 Msa0842140:CDS 30.0%
ATGTTCGTGTACTTAGTTTA+TGG - chr5_4:19093807-19093826 Msa0842140:CDS 30.0%
!!! AAGGAAAAGAAGGTTTTTTG+CGG + chr5_4:19094464-19094483 None:intergenic 30.0%
!!! ATTACATCTCTTGTTTTCCA+AGG - chr5_4:19094546-19094565 Msa0842140:intron 30.0%
!!! TTACATCTCTTGTTTTCCAA+GGG - chr5_4:19094547-19094566 Msa0842140:intron 30.0%
AATCTTGTACTAAAAACCCT+TGG + chr5_4:19094566-19094585 None:intergenic 30.0%
TTGTATATTTGCAGAATGCA+GGG - chr5_4:19094596-19094615 Msa0842140:intron 30.0%
! CTAAGATTTTACTAAGGGAA+AGG + chr5_4:19094745-19094764 None:intergenic 30.0%
CAAAACAGAAAGGTTGAAAA+AGG + chr5_4:19094891-19094910 None:intergenic 30.0%
!!! CTTTTTCAACCTTTCTGTTT+TGG - chr5_4:19094889-19094908 Msa0842140:intron 30.0%
CAATTTAGATCGAATTAGAC+AGG - chr5_4:19095018-19095037 Msa0842140:intron 30.0%
! CATTTGATCATTGTGGTTTT+TGG - chr5_4:19095149-19095168 Msa0842140:intron 30.0%
GAAGGTTGCAAAATGTTTAT+TGG - chr5_4:19095527-19095546 Msa0842140:intron 30.0%
TAAAGTTCTTCCTTCAAAAC+AGG - chr5_4:19095850-19095869 Msa0842140:CDS 30.0%
! TGTCACTTCAAATGATATGA+TGG - chr5_4:19095963-19095982 Msa0842140:CDS 30.0%
TATTAACTGTCTCTCTTGAA+AGG - chr5_4:19096038-19096057 Msa0842140:CDS 30.0%
ATTAACTGTCTCTCTTGAAA+GGG - chr5_4:19096039-19096058 Msa0842140:CDS 30.0%
ATCACTAGCTAAAAAAGCAA+AGG + chr5_4:19096142-19096161 None:intergenic 30.0%
! CCCCAATATTTATGGAATTT+TGG - chr5_4:19096307-19096326 Msa0842140:CDS 30.0%
TTGCACTATGTGAATTTGAT+TGG - chr5_4:19096334-19096353 Msa0842140:CDS 30.0%
! GACTGATGATAGGGTTATTT+TGG - chr5_4:19090754-19090773 Msa0842140:three_prime_UTR 35.0%
! GATCGAAAAGGGATTGTTTT+GGG - chr5_4:19090794-19090813 Msa0842140:three_prime_UTR 35.0%
!! GTGTTGTTAGGGTTTTTGAT+AGG - chr5_4:19090852-19090871 Msa0842140:three_prime_UTR 35.0%
! TTAGGGTTTTTGATAGGGTT+TGG - chr5_4:19090858-19090877 Msa0842140:three_prime_UTR 35.0%
! TAGGGTTTTTGATAGGGTTT+GGG - chr5_4:19090859-19090878 Msa0842140:three_prime_UTR 35.0%
TTGGCACATAGTTCTCAAAT+TGG - chr5_4:19090929-19090948 Msa0842140:three_prime_UTR 35.0%
!! TCTCAAATTGGTGCTATTGT+TGG - chr5_4:19090941-19090960 Msa0842140:three_prime_UTR 35.0%
!! CTCAAATTGGTGCTATTGTT+GGG - chr5_4:19090942-19090961 Msa0842140:three_prime_UTR 35.0%
ATATTTACTAGTGGTTGGGT+GGG + chr5_4:19091223-19091242 None:intergenic 35.0%
AATATTTACTAGTGGTTGGG+TGG + chr5_4:19091224-19091243 None:intergenic 35.0%
TATGAAAAAGGTTCACACGA+TGG - chr5_4:19091278-19091297 Msa0842140:intron 35.0%
! CTATTTTACAATCGCATACG+TGG + chr5_4:19091476-19091495 None:intergenic 35.0%
CCGACATGAAATTCAATGTT+AGG - chr5_4:19091503-19091522 Msa0842140:intron 35.0%
TTTCAATGTCATTACCACCT+AGG - chr5_4:19091534-19091553 Msa0842140:intron 35.0%
TTCAATGTCATTACCACCTA+GGG - chr5_4:19091535-19091554 Msa0842140:intron 35.0%
! TTTGAAATCGATAGTATCGG+TGG + chr5_4:19091702-19091721 None:intergenic 35.0%
! TCGTTGGAATTCTTTCCTTT+TGG - chr5_4:19091839-19091858 Msa0842140:CDS 35.0%
AAGTCCTTAAGAAAGGAGAT+TGG - chr5_4:19091982-19092001 Msa0842140:intron 35.0%
CCGTGTGATAAATTAGAATG+AGG - chr5_4:19092214-19092233 Msa0842140:intron 35.0%
ACAGATAACTGGTGAAAGTT+TGG - chr5_4:19092403-19092422 Msa0842140:CDS 35.0%
TTCAAAGATACTTTGCCCAT+CGG + chr5_4:19092479-19092498 None:intergenic 35.0%
CTATCAGACGACTTAATAGT+TGG + chr5_4:19092509-19092528 None:intergenic 35.0%
CAACTATTAAGTCGTCTGAT+AGG - chr5_4:19092507-19092526 Msa0842140:intron 35.0%
AAACAGACAACAAACGCTAA+CGG - chr5_4:19092617-19092636 Msa0842140:intron 35.0%
!! AACTCTAGCATTGACTCAAA+AGG - chr5_4:19092641-19092660 Msa0842140:intron 35.0%
CAGGAGAATTACTTGATTCA+AGG + chr5_4:19092923-19092942 None:intergenic 35.0%
ATTAAAAGCCTTGCAGTTAC+AGG + chr5_4:19093032-19093051 None:intergenic 35.0%
AGCACGTTACATTTATTGAC+TGG - chr5_4:19093059-19093078 Msa0842140:intron 35.0%
TTCTCAAATAGACTCACAAG+TGG - chr5_4:19093666-19093685 Msa0842140:CDS 35.0%
ACAAATGAGGACCTTTATGT+TGG + chr5_4:19093764-19093783 None:intergenic 35.0%
CTTCCAGAAACTAACAAATG+AGG + chr5_4:19093777-19093796 None:intergenic 35.0%
CTAAGTACACGAACATTAGA+CGG + chr5_4:19093803-19093822 None:intergenic 35.0%
! CATTAGTGCTTTTACTACTG+AGG - chr5_4:19093941-19093960 Msa0842140:intron 35.0%
AGATATTTCATGCAGATCAC+TGG - chr5_4:19094294-19094313 Msa0842140:CDS 35.0%
!!! AGGAAAAGAAGGTTTTTTGC+GGG + chr5_4:19094463-19094482 None:intergenic 35.0%
CTTGTATATTTGCAGAATGC+AGG - chr5_4:19094595-19094614 Msa0842140:intron 35.0%
TGTATATTTGCAGAATGCAG+GGG - chr5_4:19094597-19094616 Msa0842140:intron 35.0%
CTAAAAAGGTCACAGAAACT+GGG - chr5_4:19094629-19094648 Msa0842140:intron 35.0%
TAAAAAGGTCACAGAAACTG+GGG - chr5_4:19094630-19094649 Msa0842140:intron 35.0%
TTAATTGAGAATGTGGAACC+TGG - chr5_4:19094667-19094686 Msa0842140:intron 35.0%
TCATTAGATGTAGAAGCCAA+TGG - chr5_4:19094775-19094794 Msa0842140:intron 35.0%
!! CATGTCTTTGGTTCTGTTTA+TGG - chr5_4:19094983-19095002 Msa0842140:intron 35.0%
AGTTTCAATCTCCTTAAGGA+AGG - chr5_4:19095509-19095528 Msa0842140:intron 35.0%
! ACATTTTGCAACCTTCCTTA+AGG + chr5_4:19095523-19095542 None:intergenic 35.0%
ATATGTACACCAACCACTAA+TGG + chr5_4:19095884-19095903 None:intergenic 35.0%
! CAAAATGTGTGTTAGTCTAC+AGG + chr5_4:19095995-19096014 None:intergenic 35.0%
GTACCAATAAACGGTATAAC+AGG + chr5_4:19096076-19096095 None:intergenic 35.0%
TAAGTCTAGGAGCAAAATGA+TGG + chr5_4:19096098-19096117 None:intergenic 35.0%
CTGCAAATCCCCAATATTTA+TGG - chr5_4:19096299-19096318 Msa0842140:CDS 35.0%
! TTGTTCCTTTTCAACGACGA+CGG + chr5_4:19090472-19090491 None:intergenic 40.0%
!! GTTTGAAAACGGGTCGTTTT+CGG + chr5_4:19090495-19090514 None:intergenic 40.0%
! ACCCGTTTTCAAACTTCTAC+CGG - chr5_4:19090501-19090520 Msa0842140:three_prime_UTR 40.0%
ACCCGGTAGAAGTTTGAAAA+CGG + chr5_4:19090506-19090525 None:intergenic 40.0%
TTTGGTCTGTCATTCGTCAA+CGG - chr5_4:19090640-19090659 Msa0842140:three_prime_UTR 40.0%
! TTTGGTAATTGGGTCGATGT+CGG - chr5_4:19090772-19090791 Msa0842140:three_prime_UTR 40.0%
! GGATCGAAAAGGGATTGTTT+TGG - chr5_4:19090793-19090812 Msa0842140:three_prime_UTR 40.0%
!!! AAGGGATTGTTTTGGGTGAT+AGG - chr5_4:19090801-19090820 Msa0842140:three_prime_UTR 40.0%
!!! AGGGATTGTTTTGGGTGATA+GGG - chr5_4:19090802-19090821 Msa0842140:three_prime_UTR 40.0%
!! TGTTTTGGGTGATAGGGAAA+TGG - chr5_4:19090808-19090827 Msa0842140:three_prime_UTR 40.0%
GAGGTTTCTAATGCACAAGA+AGG - chr5_4:19090830-19090849 Msa0842140:three_prime_UTR 40.0%
!! ATGCACAAGAAGGTGTTGTT+AGG - chr5_4:19090840-19090859 Msa0842140:three_prime_UTR 40.0%
!! TGCACAAGAAGGTGTTGTTA+GGG - chr5_4:19090841-19090860 Msa0842140:three_prime_UTR 40.0%
! AGGGTTTTTGATAGGGTTTG+GGG - chr5_4:19090860-19090879 Msa0842140:three_prime_UTR 40.0%
GGGGAAATGGTGAAGTTTAT+GGG - chr5_4:19090900-19090919 Msa0842140:three_prime_UTR 40.0%
!! ATTGGTGCTATTGTTGGGAA+AGG - chr5_4:19090947-19090966 Msa0842140:three_prime_UTR 40.0%
TCATCTTTAGCAGCACAATG+TGG + chr5_4:19091034-19091053 None:intergenic 40.0%
! ACATTGTGCTGCTAAAGATG+AGG - chr5_4:19091033-19091052 Msa0842140:CDS 40.0%
GTTATTAGATTGGCGGTTCT+CGG - chr5_4:19091155-19091174 Msa0842140:intron 40.0%
TTAGGCACGGTAAATGCTAT+TGG - chr5_4:19091376-19091395 Msa0842140:intron 40.0%
TTTAAGCTCAACCACCTCAA+CGG + chr5_4:19091573-19091592 None:intergenic 40.0%
ATCCAAAACCTTAGCCCAAA+GGG + chr5_4:19091676-19091695 None:intergenic 40.0%
TTCGTAAAAGTGGCTTGATC+TGG - chr5_4:19091727-19091746 Msa0842140:intron 40.0%
GGAAAGAATTCCAACGATTG+AGG + chr5_4:19091836-19091855 None:intergenic 40.0%
!!! ATTTTGGGATTGTAGGTCTC+TGG - chr5_4:19092190-19092209 Msa0842140:intron 40.0%
!!! TTTTGGGATTGTAGGTCTCT+GGG - chr5_4:19092191-19092210 Msa0842140:intron 40.0%
TCAGACGACTTAATAGTTGG+CGG + chr5_4:19092506-19092525 None:intergenic 40.0%
AAGATCCTCATGTGTGTAAG+AGG + chr5_4:19092537-19092556 None:intergenic 40.0%
GGTAACCATGAATTAAGGTG+AGG + chr5_4:19092563-19092582 None:intergenic 40.0%
TCATGGTTACCTTCAATGGA+AGG - chr5_4:19092572-19092591 Msa0842140:intron 40.0%
!! AGCATTGACTCAAAAGGTTC+CGG - chr5_4:19092647-19092666 Msa0842140:intron 40.0%
GTAGTGTGATCGGCAAAAAA+GGG - chr5_4:19092714-19092733 Msa0842140:intron 40.0%
!! AGACAATAGAAGCACCAGTT+TGG + chr5_4:19092763-19092782 None:intergenic 40.0%
TTCATACTGACCTAAAGGAG+GGG + chr5_4:19092789-19092808 None:intergenic 40.0%
CTTCATACTGACCTAAAGGA+GGG + chr5_4:19092790-19092809 None:intergenic 40.0%
TCTTCATACTGACCTAAAGG+AGG + chr5_4:19092791-19092810 None:intergenic 40.0%
!!! CGTCACTATTTCTGCTTTTG+AGG - chr5_4:19092817-19092836 Msa0842140:intron 40.0%
!! ACTTGATTCAAGGTTCTGGA+CGG + chr5_4:19092913-19092932 None:intergenic 40.0%
AGAATAACAGCATCTTGTGC+AGG + chr5_4:19092942-19092961 None:intergenic 40.0%
GCTGAAGATCACATTCGAAA+TGG - chr5_4:19092978-19092997 Msa0842140:intron 40.0%
! ATTGACTGGTAATGAAGGTC+AGG - chr5_4:19093073-19093092 Msa0842140:intron 40.0%
TCAGAATTGAGAGAAGTGAG+TGG - chr5_4:19093101-19093120 Msa0842140:intron 40.0%
CAGAATTGAGAGAAGTGAGT+GGG - chr5_4:19093102-19093121 Msa0842140:intron 40.0%
AGAATTGAGAGAAGTGAGTG+GGG - chr5_4:19093103-19093122 Msa0842140:intron 40.0%
GCTGATATTCAACTACTGCA+TGG - chr5_4:19093125-19093144 Msa0842140:intron 40.0%
AGATAATGATGTGGTAGTCC+AGG - chr5_4:19093169-19093188 Msa0842140:intron 40.0%
! GGTCCTCATTTGTTAGTTTC+TGG - chr5_4:19093771-19093790 Msa0842140:CDS 40.0%
! TTACTACTGAGGCATTCATG+TGG - chr5_4:19093952-19093971 Msa0842140:intron 40.0%
TATTTCATGCAGATCACTGG+TGG - chr5_4:19094297-19094316 Msa0842140:CDS 40.0%
! AACCTTCTTTTCCTTTTGCG+AGG - chr5_4:19094469-19094488 Msa0842140:intron 40.0%
AACCTCGCAAAAGGAAAAGA+AGG + chr5_4:19094474-19094493 None:intergenic 40.0%
AAGAAGGTGAAGAATACCTG+TGG + chr5_4:19094501-19094520 None:intergenic 40.0%
! AGGGGTGTATCAAGCTAAAA+AGG - chr5_4:19094615-19094634 Msa0842140:intron 40.0%
GCTAAAAAGGTCACAGAAAC+TGG - chr5_4:19094628-19094647 Msa0842140:intron 40.0%
GTTGAAAAAGGATCAGAAGC+AGG + chr5_4:19094879-19094898 None:intergenic 40.0%
TTGGTAAAATCTTTCGGCAG+AGG - chr5_4:19094908-19094927 Msa0842140:intron 40.0%
ATAGTCTCAGAGCATGTCTT+TGG - chr5_4:19094971-19094990 Msa0842140:intron 40.0%
GGTTCTGTTTATGGTGAAGA+TGG - chr5_4:19094992-19095011 Msa0842140:intron 40.0%
TCTGTTTATGGTGAAGATGG+CGG - chr5_4:19094995-19095014 Msa0842140:intron 40.0%
!! ATTTAATTTGCCGTGACTCG+TGG - chr5_4:19095080-19095099 Msa0842140:intron 40.0%
GCTGAGTTTCAATCTCCTTA+AGG - chr5_4:19095505-19095524 Msa0842140:intron 40.0%
TAACATCTGCACCTGAAATC+TGG + chr5_4:19095672-19095691 None:intergenic 40.0%
TGAGCTGCAAATGTTTGATC+AGG + chr5_4:19095754-19095773 None:intergenic 40.0%
AGTTCTTCCTTCAAAACAGG+AGG - chr5_4:19095853-19095872 Msa0842140:CDS 40.0%
! AATGTGTGTTAGTCTACAGG+AGG + chr5_4:19095992-19096011 None:intergenic 40.0%
GCTCCTGTTATACCGTTTAT+TGG - chr5_4:19096070-19096089 Msa0842140:CDS 40.0%
GTGGTGATCAGTGGTTTCAA+CGG + chr5_4:19090428-19090447 None:intergenic 45.0%
CCCGGTAGAAGTTTGAAAAC+GGG + chr5_4:19090505-19090524 None:intergenic 45.0%
! CCCGTTTTCAAACTTCTACC+GGG - chr5_4:19090502-19090521 Msa0842140:three_prime_UTR 45.0%
!! TCAACGGTTGGTGGTTTGAT+CGG - chr5_4:19090656-19090675 Msa0842140:three_prime_UTR 45.0%
GTGGTTTGATCGGAAGTTCA+GGG - chr5_4:19090666-19090685 Msa0842140:three_prime_UTR 45.0%
TTTGGGTGATAGGGAAATGG+AGG - chr5_4:19090811-19090830 Msa0842140:three_prime_UTR 45.0%
! GGGTTTTTGATAGGGTTTGG+GGG - chr5_4:19090861-19090880 Msa0842140:three_prime_UTR 45.0%
GAAAGTGAGAAAGGGGGAAA+TGG - chr5_4:19090887-19090906 Msa0842140:three_prime_UTR 45.0%
GGGGGAAATGGTGAAGTTTA+TGG - chr5_4:19090899-19090918 Msa0842140:three_prime_UTR 45.0%
! GTGCTATTGTTGGGAAAGGA+GGG - chr5_4:19090951-19090970 Msa0842140:three_prime_UTR 45.0%
GAAAAAGGTTCACACGATGG+AGG - chr5_4:19091281-19091300 Msa0842140:intron 45.0%
ATGTCATTACCACCTAGGGA+CGG - chr5_4:19091539-19091558 Msa0842140:intron 45.0%
TTAAGCTCAACCACCTCAAC+GGG + chr5_4:19091572-19091591 None:intergenic 45.0%
AGTTTGAACCCTTTGGGCTA+AGG - chr5_4:19091665-19091684 Msa0842140:intron 45.0%
! AACCCTTTGGGCTAAGGTTT+TGG - chr5_4:19091671-19091690 Msa0842140:intron 45.0%
GATCCAAAACCTTAGCCCAA+AGG + chr5_4:19091677-19091696 None:intergenic 45.0%
!! GAAATCGATAGTATCGGTGG+CGG + chr5_4:19091699-19091718 None:intergenic 45.0%
GGCTTGATCTGGCAAAATTG+TGG - chr5_4:19091738-19091757 Msa0842140:intron 45.0%
TCTTCAAGATTGTCCACCGA+TGG - chr5_4:19092460-19092479 Msa0842140:CDS 45.0%
CTTCAAGATTGTCCACCGAT+GGG - chr5_4:19092461-19092480 Msa0842140:CDS 45.0%
AAAGATACTTTGCCCATCGG+TGG + chr5_4:19092476-19092495 None:intergenic 45.0%
GTCAACCTCTTACACACATG+AGG - chr5_4:19092529-19092548 Msa0842140:intron 45.0%
TCTGAAAACAACTGCGTGTC+CGG + chr5_4:19092669-19092688 None:intergenic 45.0%
CTTTGCTCTAACAACGTAGC+TGG - chr5_4:19092692-19092711 Msa0842140:intron 45.0%
! AACGTAGCTGGTAGTGTGAT+CGG - chr5_4:19092704-19092723 Msa0842140:intron 45.0%
GGTAGTGTGATCGGCAAAAA+AGG - chr5_4:19092713-19092732 Msa0842140:intron 45.0%
ATTGTCTTTGCCCCTCCTTT+AGG - chr5_4:19092776-19092795 Msa0842140:intron 45.0%
CGCTCTTCATACTGACCTAA+AGG + chr5_4:19092794-19092813 None:intergenic 45.0%
TGGAATCACCTGTAACTGCA+AGG - chr5_4:19093021-19093040 Msa0842140:intron 45.0%
AGTGGCTGAGTTTCTTGTCA+GGG - chr5_4:19094223-19094242 Msa0842140:CDS 45.0%
GGATAATCCTTTGCCCAATG+AGG - chr5_4:19094368-19094387 Msa0842140:CDS 45.0%
TGTGGTAGAAACCTCGCAAA+AGG + chr5_4:19094483-19094502 None:intergenic 45.0%
! TTTTGCGAGGTTTCTACCAC+AGG - chr5_4:19094482-19094501 Msa0842140:intron 45.0%
CAGGTCAGTATAATCCAGCT+GGG - chr5_4:19094690-19094709 Msa0842140:intron 45.0%
GGGAGAAAGAATCACAGCAA+TGG + chr5_4:19094724-19094743 None:intergenic 45.0%
CACAGTAGTGTTTGTCACAG+TGG + chr5_4:19094945-19094964 None:intergenic 45.0%
CACTGTGACAAACACTACTG+TGG - chr5_4:19094943-19094962 Msa0842140:intron 45.0%
!! TGTTTCTGGGACCAGATTTC+AGG - chr5_4:19095658-19095677 Msa0842140:intron 45.0%
AAACTGCACAAGCAAGCTGA+TGG - chr5_4:19095797-19095816 Msa0842140:CDS 45.0%
TCTTCCTTCAAAACAGGAGG+AGG - chr5_4:19095856-19095875 Msa0842140:CDS 45.0%
!!! AATTTTTTTTTATTTGTATA+AGG - chr5_4:19095585-19095604 Msa0842140:intron 5.0%
GTGATCAGTGGTTTCAACGG+CGG + chr5_4:19090425-19090444 None:intergenic 50.0%
! TTCCTTTTCAACGACGACGG+TGG + chr5_4:19090469-19090488 None:intergenic 50.0%
GTCTGTCATTCGTCAACGGT+TGG - chr5_4:19090644-19090663 Msa0842140:three_prime_UTR 50.0%
TGTCATTCGTCAACGGTTGG+TGG - chr5_4:19090647-19090666 Msa0842140:three_prime_UTR 50.0%
GGTGGTTTGATCGGAAGTTC+AGG - chr5_4:19090665-19090684 Msa0842140:three_prime_UTR 50.0%
GGTCAATCGTTTCTCAGCTC+CGG - chr5_4:19090687-19090706 Msa0842140:three_prime_UTR 50.0%
! TTTTGCATCCGGTTTCTCGC+CGG + chr5_4:19090709-19090728 None:intergenic 50.0%
!! CTCGCAGTGGATTTTGCATC+CGG + chr5_4:19090720-19090739 None:intergenic 50.0%
CAAAATCCACTGCGAGGATG+CGG - chr5_4:19090724-19090743 Msa0842140:three_prime_UTR 50.0%
GGTGGTTGGGACTGATGATA+GGG - chr5_4:19090745-19090764 Msa0842140:three_prime_UTR 50.0%
GGTCGATGTCGGATCGAAAA+GGG - chr5_4:19090783-19090802 Msa0842140:three_prime_UTR 50.0%
TGGGGGCTTGAAAGTGAGAA+AGG - chr5_4:19090878-19090897 Msa0842140:three_prime_UTR 50.0%
GGGGGCTTGAAAGTGAGAAA+GGG - chr5_4:19090879-19090898 Msa0842140:three_prime_UTR 50.0%
GGGGCTTGAAAGTGAGAAAG+GGG - chr5_4:19090880-19090899 Msa0842140:three_prime_UTR 50.0%
GGGCTTGAAAGTGAGAAAGG+GGG - chr5_4:19090881-19090900 Msa0842140:three_prime_UTR 50.0%
!! GGTGCTATTGTTGGGAAAGG+AGG - chr5_4:19090950-19090969 Msa0842140:three_prime_UTR 50.0%
TTAGCAGCACAATGTGGAGC+AGG + chr5_4:19091028-19091047 None:intergenic 50.0%
! CTCGGTTGTCTGGTTTGAAC+CGG - chr5_4:19091173-19091192 Msa0842140:intron 50.0%
!! TAGCTCAACCGGTTTGAGTG+CGG + chr5_4:19091200-19091219 None:intergenic 50.0%
ATTTCAGCCAGCTACTGCTG+TGG - chr5_4:19093001-19093020 Msa0842140:intron 50.0%
!! GAGCGCTTCTGAGATTGTCT+AGG + chr5_4:19094198-19094217 None:intergenic 50.0%
CTGACAAGAAACTCAGCCAC+TGG + chr5_4:19094224-19094243 None:intergenic 50.0%
CAGTGGCTGAGTTTCTTGTC+AGG - chr5_4:19094222-19094241 Msa0842140:CDS 50.0%
GCTTCAGCAAGCACCTCATT+GGG + chr5_4:19094384-19094403 None:intergenic 50.0%
TGCTTCAGCAAGCACCTCAT+TGG + chr5_4:19094385-19094404 None:intergenic 50.0%
TTGAGAATGTGGAACCTGGC+AGG - chr5_4:19094671-19094690 Msa0842140:intron 50.0%
CTGGATTATACTGACCTGCC+AGG + chr5_4:19094688-19094707 None:intergenic 50.0%
GCAGGTCAGTATAATCCAGC+TGG - chr5_4:19094689-19094708 Msa0842140:intron 50.0%
AATTTGCCGTGACTCGTGGT+TGG - chr5_4:19095084-19095103 Msa0842140:intron 50.0%
ATTTGCCGTGACTCGTGGTT+GGG - chr5_4:19095085-19095104 Msa0842140:intron 50.0%
TTGGGATTATGGTGTCCACG+AGG - chr5_4:19095482-19095501 Msa0842140:intron 50.0%
TGGGATTATGGTGTCCACGA+GGG - chr5_4:19095483-19095502 Msa0842140:intron 50.0%
AGATTGAAACTCAGCCCTCG+TGG + chr5_4:19095500-19095519 None:intergenic 50.0%
GTATTTGATCCCAGCAGCAC+CGG - chr5_4:19095694-19095713 Msa0842140:intron 50.0%
AACCTTCCCTCCACTTGTAC+CGG + chr5_4:19095716-19095735 None:intergenic 50.0%
GGAGGGAAGGTTGTGATATC+TGG - chr5_4:19095724-19095743 Msa0842140:intron 50.0%
TGCACAAGCAAGCTGATGGA+TGG - chr5_4:19095801-19095820 Msa0842140:CDS 50.0%
! CAAGCAAGCTGATGGATGGA+TGG - chr5_4:19095805-19095824 Msa0842140:CDS 50.0%
CGGTATAACAGGAGCTTCCA+CGG + chr5_4:19096065-19096084 None:intergenic 50.0%
CTAGTTCACGCTCGATGTGA+AGG - chr5_4:19096224-19096243 Msa0842140:intron 50.0%
ATCAGTGGTTTCAACGGCGG+CGG + chr5_4:19090422-19090441 None:intergenic 55.0%
! TTGTGGGTGGTGGTGATCAG+TGG + chr5_4:19090437-19090456 None:intergenic 55.0%
! CTTTTCAACGACGACGGTGG+TGG + chr5_4:19090466-19090485 None:intergenic 55.0%
CACCACCGTCGTCGTTGAAA+AGG - chr5_4:19090464-19090483 Msa0842140:three_prime_UTR 55.0%
CGGATGCAAAATCCACTGCG+AGG - chr5_4:19090718-19090737 Msa0842140:three_prime_UTR 55.0%
CGGTGGTTGGGACTGATGAT+AGG - chr5_4:19090744-19090763 Msa0842140:three_prime_UTR 55.0%
GGGTCGATGTCGGATCGAAA+AGG - chr5_4:19090782-19090801 Msa0842140:three_prime_UTR 55.0%
ATTGGCGGTTCTCGGTTGTC+TGG - chr5_4:19091163-19091182 Msa0842140:intron 55.0%
TCATTACCACCTAGGGACGG+AGG - chr5_4:19091542-19091561 Msa0842140:intron 55.0%
GGTGATTCCACAGCAGTAGC+TGG + chr5_4:19093011-19093030 None:intergenic 55.0%
GCAAGCACCTCATTGGGCAA+AGG + chr5_4:19094378-19094397 None:intergenic 55.0%
!! GGCACCTCCTCCTGTTTTGA+AGG + chr5_4:19095863-19095882 None:intergenic 55.0%
!! ACAGGAGGAGGTGCCATTAG+TGG - chr5_4:19095868-19095887 Msa0842140:CDS 55.0%
!! GAGGAGGTGCCATTAGTGGT+TGG - chr5_4:19095872-19095891 Msa0842140:CDS 55.0%
TGTCTCTCTTGAAAGGGCCG+TGG - chr5_4:19096045-19096064 Msa0842140:CDS 55.0%
GTTCACGCTCGATGTGAAGG+CGG - chr5_4:19096227-19096246 Msa0842140:intron 55.0%
TTCACGCTCGATGTGAAGGC+GGG - chr5_4:19096228-19096247 Msa0842140:intron 55.0%
TCAACGGCGGCGGAGAAAGT+GGG + chr5_4:19090412-19090431 None:intergenic 60.0%
TTCAACGGCGGCGGAGAAAG+TGG + chr5_4:19090413-19090432 None:intergenic 60.0%
!! ACGGTGGTGGTGGTGGTTGT+GGG + chr5_4:19090453-19090472 None:intergenic 60.0%
! TTCAACGACGACGGTGGTGG+TGG + chr5_4:19090463-19090482 None:intergenic 60.0%
TCTCAGCTCCGGCGAGAAAC+CGG - chr5_4:19090698-19090717 Msa0842140:three_prime_UTR 60.0%
AATCCACTGCGAGGATGCGG+TGG - chr5_4:19090727-19090746 Msa0842140:three_prime_UTR 60.0%
ACTGCGAGGATGCGGTGGTT+GGG - chr5_4:19090732-19090751 Msa0842140:three_prime_UTR 60.0%
GAACCGGACCGCACTCAAAC+CGG - chr5_4:19091189-19091208 Msa0842140:intron 60.0%
!! CAACCGGTTTGAGTGCGGTC+CGG + chr5_4:19091195-19091214 None:intergenic 60.0%
GGTTGGGTGGGTAGCTCAAC+CGG + chr5_4:19091211-19091230 None:intergenic 60.0%
!! CTCAGAAGCGCTCATGCCAG+TGG - chr5_4:19094205-19094224 Msa0842140:CDS 60.0%
CAATGGCGCATACTCCCAGC+TGG + chr5_4:19094707-19094726 None:intergenic 60.0%
CACAGCCCAACCACGAGTCA+CGG + chr5_4:19095093-19095112 None:intergenic 60.0%
!! CCACTTGTACCGGTGCTGCT+GGG + chr5_4:19095706-19095725 None:intergenic 60.0%
!! TCCACTTGTACCGGTGCTGC+TGG + chr5_4:19095707-19095726 None:intergenic 60.0%
!! AGCAGCACCGGTACAAGTGG+AGG - chr5_4:19095706-19095725 Msa0842140:intron 60.0%
!! GCAGCACCGGTACAAGTGGA+GGG - chr5_4:19095707-19095726 Msa0842140:intron 60.0%
CACCGGTACAAGTGGAGGGA+AGG - chr5_4:19095711-19095730 Msa0842140:intron 60.0%
CAACGGCGGCGGAGAAAGTG+GGG + chr5_4:19090411-19090430 None:intergenic 65.0%
!! GTGGTGGTGGTTGTGGGTGG+TGG + chr5_4:19090447-19090466 None:intergenic 65.0%
!! GTGGTGGTGGTGGTTGTGGG+TGG + chr5_4:19090450-19090469 None:intergenic 65.0%
!! GACGGTGGTGGTGGTGGTTG+TGG + chr5_4:19090454-19090473 None:intergenic 65.0%
!! AACGACGACGGTGGTGGTGG+TGG + chr5_4:19090460-19090479 None:intergenic 65.0%
CAACCACCGCATCCTCGCAG+TGG + chr5_4:19090733-19090752 None:intergenic 65.0%
CACTGCGAGGATGCGGTGGT+TGG - chr5_4:19090731-19090750 Msa0842140:three_prime_UTR 65.0%
!! CCCAGCAGCACCGGTACAAG+TGG - chr5_4:19095703-19095722 Msa0842140:intron 65.0%
GGACTGCCTCCGTCCCTAGG+TGG + chr5_4:19091551-19091570 None:intergenic 70.0%
ACGGGACTGCCTCCGTCCCT+AGG + chr5_4:19091554-19091573 None:intergenic 70.0%
GGACGGAGGCAGTCCCGTTG+AGG - chr5_4:19091556-19091575 Msa0842140:intron 70.0%
CGGAGGCAGTCCCGTTGAGG+TGG - chr5_4:19091559-19091578 Msa0842140:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 19090400 19096399 19090400 ID=Msa0842140;Name=Msa0842140
chr5_4 mRNA 19090400 19096399 19090400 ID=Msa0842140-mRNA-1;Parent=Msa0842140;Name=Msa0842140-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.85|0.75|1|1|1|8|583|580
chr5_4 exon 19090400 19091126 19090400 ID=Msa0842140-mRNA-1:exon:7982;Parent=Msa0842140-mRNA-1
chr5_4 exon 19091760 19091871 19091760 ID=Msa0842140-mRNA-1:exon:7981;Parent=Msa0842140-mRNA-1
chr5_4 exon 19092107 19092189 19092107 ID=Msa0842140-mRNA-1:exon:7980;Parent=Msa0842140-mRNA-1
chr5_4 exon 19092296 19092490 19092296 ID=Msa0842140-mRNA-1:exon:7979;Parent=Msa0842140-mRNA-1
chr5_4 exon 19093609 19093881 19093609 ID=Msa0842140-mRNA-1:exon:7978;Parent=Msa0842140-mRNA-1
chr5_4 exon 19093961 19094392 19093961 ID=Msa0842140-mRNA-1:exon:7977;Parent=Msa0842140-mRNA-1
chr5_4 exon 19095733 19096112 19095733 ID=Msa0842140-mRNA-1:exon:7976;Parent=Msa0842140-mRNA-1
chr5_4 exon 19096276 19096399 19096276 ID=Msa0842140-mRNA-1:exon:7975;Parent=Msa0842140-mRNA-1
chr5_4 CDS 19096276 19096399 19096276 ID=Msa0842140-mRNA-1:cds;Parent=Msa0842140-mRNA-1
chr5_4 CDS 19095733 19096112 19095733 ID=Msa0842140-mRNA-1:cds;Parent=Msa0842140-mRNA-1
chr5_4 CDS 19093961 19094392 19093961 ID=Msa0842140-mRNA-1:cds;Parent=Msa0842140-mRNA-1
chr5_4 CDS 19093609 19093881 19093609 ID=Msa0842140-mRNA-1:cds;Parent=Msa0842140-mRNA-1
chr5_4 CDS 19092296 19092490 19092296 ID=Msa0842140-mRNA-1:cds;Parent=Msa0842140-mRNA-1
chr5_4 CDS 19092107 19092189 19092107 ID=Msa0842140-mRNA-1:cds;Parent=Msa0842140-mRNA-1
chr5_4 CDS 19091760 19091871 19091760 ID=Msa0842140-mRNA-1:cds;Parent=Msa0842140-mRNA-1
chr5_4 CDS 19090983 19091126 19090983 ID=Msa0842140-mRNA-1:cds;Parent=Msa0842140-mRNA-1
chr5_4 three_prime_UTR 19090400 19090982 19090400 ID=Msa0842140-mRNA-1:three_prime_utr;Parent=Msa0842140-mRNA-1
Gene Sequence

>Msa0842140

ATGCAAGACCCCACTTTCTCCGCCGCCGTTGAAACCACTGATCACCACCACCCACAACCACCACCACCACCGTCGTCGTTGAAAAGGAACAACCGAAAACGACCCGTTTTCAAACTTCTACCGGGGTCAATCGTTTCTCAGCTCCGGCGAGAAACCGGATGCAAAATCCACTGCGAGGATGCGGTGGTTGGGACTGATGATAGGGTTATTTTGGTAATTGGGTCGATGTCGGATCGAAAAGGGATTGTTTTGGGTGATAGGGAAATGGAGGTTTCTAATGCACAAGAAGGTGTTGTTAGGGTTTTTGATAGGGTTTGGGGGCTTGAAAGTGAGAAAGGGGGAAATGGTGAAGTTTATGGGAAATTGTTGGCACATAGTTCTCAAATTGGTGCTATTGTTGGGAAAGGAGGGAAGAATATAAGTAATATTAGGAATAATAGTGGTTCTAATATTAGGGTTTGTCCTGCTCCACATTGTGCTGCTAAAGATGAGGAGTTAATTCTTATAACTGGTGAAAGTTTGGCTGTAAAGAAAGCACTGATTTATGTATCTTATTGTCTTCAAGATTGTCCACCGATGGGCAAAGTATCTTTGAACACACCGCCAACTATTAAGTCGTCTGATAGGTCAACCTCTTACACACATGAGGATCTTTTTCCTCACCTTAATTCATGGTTACCTTCAATGGAAGGTTTATCTATAAACGATGCTTCAAAACAGACAACAAACGCTAACGGAAACTCTAGCATTGACTCAAAAGGTTCCGGACACGCAGTTGTTTTCAGACTACTTTGCTCTAACAACGTAGCTGGTAGTGTGATCGGCAAAAAAGGGTCTATAGTTAGAACTTTTGAAATCCAAACTGGTGCTTCTATTGTCTTTGCCCCTCCTTTAGGTCAGTATGAAGAGCGCATCGTCACTATTTCTGCTTTTGAGAACCTTGAATCAAGTAATTCTCCTGCACAAGATGCTGTTATTCTTGTCTTCACTAGAATTGCTGAAGATCACATTCGAAATGGATTTCAGCCAGCTACTGCTGTGGAATCACCTGTAACTGCAAGGCTTTTAATCACAACAAGCACGTTACATTTATTGACTGGTAATGAAGGTCAGGTGATTTCAGAATTGAGAGAAGTGAGTGGGGCTGATATTCAACTACTGCATGGAGAGCCAATTCCTAATGCTTCAGATAATGATGTGGTAGTCCAGATCACTGGTGGATACAGATGCGTAGAAAATGCTCTACGTAAAATCACTTCTATAATTAGGGATAATCCTTTGCCCAATGAGGTGCTTGCTGAAGCAAGAATCAAACCAAGTTTTCCTTTAAATAAAGATACTGTTAGGAGTAAGTTCATTACCCGCAAAAAACCTTCTTTTCCTTTTGCGAGGTTTCTACCACAGAATGCAGGGGTGTATCAAGCTAAAAAGGTCACAGAAACTGGGGAATCAAATACGAATTTAATTGAGAATGTGGAACCTGGCAGAGGAAACATTGTTGCCACTGTGACAAACACTACTGTGGAGATTATAGTCTCAGAGCATGTCTTTGGTTCTGTTTATGGTGAAGATGGCGGCAATTTAGATCGAATTAGACAGATTTCAGGTGCAGATGTTACTGTATTTGATCCCAGCAGCACCGGTACAAGTGGAGGGAAGGTTGTGATATCTGGAACACCTGATCAAACATTTGCAGCTCAGAGTTTGCTTCAAGCTTTCATTCAAACTGCACAAGCAAGCTGA
Protein sequence

>Msa0842140

MQDPTFSAAVETTDHHHPQPPPPPSSLKRNNRKRPVFKLLPGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDRKGIVLGDREMEVSNAQEGVVRVFDRVWGLESEKGGNGEVYGKLLAHSSQIGAIVGKGGKNISNIRNNSGSNIRVCPAPHCAAKDEELILITGESLAVKKALIYVSYCLQDCPPMGKVSLNTPPTIKSSDRSTSYTHEDLFPHLNSWLPSMEGLSINDASKQTTNANGNSSIDSKGSGHAVVFRLLCSNNVAGSVIGKKGSIVRTFEIQTGASIVFAPPLGQYEERIVTISAFENLESSNSPAQDAVILVFTRIAEDHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEGQVISELREVSGADIQLLHGEPIPNASDNDVVVQITGGYRCVENALRKITSIIRDNPLPNEVLAEARIKPSFPLNKDTVRSKFITRKKPSFPFARFLPQNAGVYQAKKVTETGESNTNLIENVEPGRGNIVATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQAFIQTAQAS*