AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0187590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187590 MtrunA17_Chr7g0273991 99.286 280 2 0 1 280 1 280 0.0 553
Msa0187590 MtrunA17_Chr1g0208501 68.240 233 73 1 49 280 36 268 8.87e-111 321
Msa0187590 MtrunA17_Chr2g0293571 29.675 246 155 7 50 280 46 288 1.66e-27 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187590 AT3G04790.1 72.464 276 69 3 12 280 1 276 2.34e-139 394
Msa0187590 AT2G01290.1 58.824 255 101 1 26 280 14 264 2.93e-105 307
Msa0187590 AT1G71100.1 61.506 239 87 1 47 280 27 265 1.76e-97 287
Msa0187590 AT5G44520.1 31.379 290 167 7 1 275 1 273 1.14e-30 116
Msa0187590 AT5G44520.2 31.379 290 167 7 1 275 31 303 2.29e-30 116

Find 86 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTTTCTCAATCTTGTTAA+AGG 0.131907 2_1:+2327236 Msa0187590:CDS
GACATATTCAACGGCTTTAT+CGG 0.261652 2_1:-2326994 Msa0187600:CDS
GTTGAGAAGTTCGCCGAGTT+TGG 0.275002 2_1:-2327072 Msa0187600:CDS
TGGTATTCCTCTCTCTGTTC+TGG 0.303086 2_1:+2327163 Msa0187590:CDS
ACGAAACTGGTCTCCGGTTT+GGG 0.323814 2_1:+2327332 Msa0187590:CDS
AGCTTGTTCTTCGGTGCGTT+TGG 0.324267 2_1:-2327132 Msa0187600:CDS
TGCTCTCCTCCGTGAGAAAA+TGG 0.332089 2_1:+2327268 Msa0187590:CDS
GTTGGAAATATAATTTGATT+AGG 0.342353 2_1:+2327396 Msa0187590:CDS
GTCATCATTGCTGGTAAAAC+TGG 0.347429 2_1:+2327623 Msa0187590:CDS
CACGAAACTGGTCTCCGGTT+TGG 0.353621 2_1:+2327331 Msa0187590:CDS
AGCAGCATTTGCATCTCTAA+TGG 0.354451 2_1:-2327534 Msa0187600:intron
AGCGGCATGGTCCTCGGCCT+CGG 0.399773 2_1:+2327020 Msa0187590:CDS
TTCTTCGGTGCGTTTGGAAG+TGG 0.409826 2_1:-2327126 Msa0187600:CDS
GCTACCTCTGTCATCATTGC+TGG 0.413073 2_1:+2327614 Msa0187590:CDS
GGTCGTCGACGACACGAAAC+TGG 0.425169 2_1:+2327319 Msa0187590:CDS
GCTGAGATTTCGTCGCTTGA+AGG 0.433006 2_1:+2327560 Msa0187590:CDS
GACGAAGGCGGCGGTGGAGC+CGG 0.434905 2_1:-2327045 Msa0187600:CDS
AGTGAGGGTTATGGCTTTGA+CGG 0.436346 2_1:-2326946 Msa0187600:CDS
CAAGAATTGTTCAAAGAAGA+AGG 0.437979 2_1:+2327422 Msa0187590:CDS
ATTAGAATTATCAGTGACAT+AGG 0.448013 2_1:-2327483 Msa0187600:intron
CTCAATCTTGTTAAAGGCCG+CGG 0.449503 2_1:+2327242 Msa0187590:CDS
GCAGCATTTGCATCTCTAAT+GGG 0.454829 2_1:-2327533 Msa0187600:intron
GTGCGTAGTTTAAGAGAGGA+AGG 0.456139 2_1:-2326906 None:intergenic
GTCGTCTTGAGTGAGGGTTA+TGG 0.462715 2_1:-2326955 Msa0187600:CDS
TGGAGCCGGTGCCGAGGCCG+AGG 0.476978 2_1:-2327031 Msa0187600:CDS
GGAGACGACGAAGGCGGCGG+TGG 0.479468 2_1:-2327051 Msa0187600:CDS
GTCTCCGGTTTGGGTGGAAG+CGG 0.485988 2_1:+2327341 Msa0187590:CDS
ATGGTCCTCGGCCTCGGCAC+CGG 0.489708 2_1:+2327026 Msa0187590:CDS
ATTAGAGATGCAAATGCTGC+TGG 0.490372 2_1:+2327536 Msa0187590:CDS
GAAGAACAAGCTCGTTCTCT+TGG 0.494473 2_1:+2327143 Msa0187590:CDS
GTCAAAAGCGGCATGGTCCT+CGG 0.496677 2_1:+2327014 Msa0187590:CDS
CGGTTTAGCGATGCCGGTGG+AGG 0.498139 2_1:+2327361 Msa0187590:CDS
AAGAGAACGAGCTTGTTCTT+CGG 0.503417 2_1:-2327141 Msa0187600:CDS
CTTGAAGGTGTCGTCGAGCA+TGG 0.504176 2_1:+2327575 Msa0187590:CDS
GGCTTTGACGGAGAAGGAAG+GGG 0.506146 2_1:-2326934 Msa0187600:CDS
TGGAAGCGGTTTAGCGATGC+CGG 0.508776 2_1:+2327355 Msa0187590:CDS
TCTTCGGTGCGTTTGGAAGT+GGG 0.512477 2_1:-2327125 Msa0187600:CDS
TAAACCGCTTCCACCCAAAC+CGG 0.514569 2_1:-2327345 Msa0187600:intron
GCATGGTTTGTTCTTGAACA+TGG 0.523331 2_1:+2327592 Msa0187590:CDS
TGGCTTTGACGGAGAAGGAA+GGG 0.523724 2_1:-2326935 Msa0187600:CDS
TAAGAGAGGAAGGGGTGCGT+AGG 0.523850 2_1:-2326896 None:intergenic
GGTTATGGCTTTGACGGAGA+AGG 0.526579 2_1:-2326940 Msa0187600:CDS
CGTCTCGATCTCGCCATCGA+CGG 0.527285 2_1:+2327197 Msa0187590:CDS
CGGCGGTGGAGCCGGTGCCG+AGG 0.537408 2_1:-2327037 Msa0187600:CDS
TGCGTAGTTTAAGAGAGGAA+GGG 0.537577 2_1:-2326905 None:intergenic
GATGATGTTGGTGAGTTCGC+CGG 0.539899 2_1:-2327096 Msa0187600:CDS
TTAGAATTATCAGTGACATA+GGG 0.543200 2_1:-2327482 Msa0187600:intron
GCCTTCGTCGTCTCCAAACT+CGG 0.546205 2_1:+2327059 Msa0187590:CDS
TGGTGGTGATGAGAGGGATA+AGG 0.549250 2_1:-2326832 None:intergenic
TTTGAGGTCGTCTTGAGTGA+GGG 0.553709 2_1:-2326961 Msa0187600:CDS
TTTGGTGCGTAGTTTAAGAG+AGG 0.557983 2_1:-2326910 None:intergenic
GGCGAACTCACCAACATCAT+CGG 0.560538 2_1:+2327098 Msa0187590:CDS
ATGGCTTTGACGGAGAAGGA+AGG 0.560597 2_1:-2326936 Msa0187600:CDS
CAAAACTGAACAACCTCCAC+CGG 0.562915 2_1:-2327374 Msa0187600:intron
TTTGGAGACGACGAAGGCGG+CGG 0.566766 2_1:-2327054 Msa0187600:CDS
AGAGTGATGGTGGTGATGAG+AGG 0.569060 2_1:-2326839 None:intergenic
GCGTAGTTTAAGAGAGGAAG+GGG 0.569207 2_1:-2326904 None:intergenic
GAGTGATGGTGGTGATGAGA+GGG 0.569582 2_1:-2326838 None:intergenic
GACGACACGAAACTGGTCTC+CGG 0.578678 2_1:+2327326 Msa0187590:CDS
GCCGTTGAATATGTCAAAAG+CGG 0.580001 2_1:+2327002 Msa0187590:CDS
ATATTCAACGGCTTTATCGG+CGG 0.581768 2_1:-2326991 Msa0187600:CDS
CACGACGAATTTATCAGAAG+CGG 0.584428 2_1:-2327297 Msa0187600:CDS
CCTTTAACAAGATTGAGAAA+CGG 0.589530 2_1:-2327236 Msa0187600:CDS
AATGAGGAAGAGAGTGATGG+TGG 0.598981 2_1:-2326849 None:intergenic
TTATCGTCCAGAACAGAGAG+AGG 0.606235 2_1:-2327170 Msa0187600:CDS
GCTTTGACGGAGAAGGAAGG+GGG 0.608310 2_1:-2326933 Msa0187600:CDS
TGTGGAGGCATTGAAGAATG+AGG 0.609129 2_1:-2326865 None:intergenic
GACTTCATCAGCACCGTCGA+TGG 0.609689 2_1:-2327210 Msa0187600:CDS
GGTGCGTAGGTTAAGACGTG+TGG 0.614414 2_1:-2326883 None:intergenic
AAACTGGTCTCCGGTTTGGG+TGG 0.616234 2_1:+2327335 Msa0187590:CDS
AAGAATGAGGAAGAGAGTGA+TGG 0.624967 2_1:-2326852 None:intergenic
AGTGGGAACGCCGATGATGT+TGG 0.637767 2_1:-2327108 Msa0187600:CDS
GCGTAGGTTAAGACGTGTGG+AGG 0.638442 2_1:-2326880 None:intergenic
TGTTGATGCGAAATTGAGAG+TGG 0.639035 2_1:+2327445 Msa0187590:CDS
AAGCGGTTTAGCGATGCCGG+TGG 0.640481 2_1:+2327358 Msa0187590:CDS
GCCGAGTTTGGAGACGACGA+AGG 0.645857 2_1:-2327060 Msa0187600:CDS
AAATTGAGAGTGGATGAAAG+TGG 0.649838 2_1:+2327455 Msa0187590:CDS
TGAATATGTCAAAAGCGGCA+TGG 0.650597 2_1:+2327007 Msa0187590:CDS
GAGTTTGGAGACGACGAAGG+CGG 0.656291 2_1:-2327057 Msa0187600:CDS
CTCGGCGAACTTCTCAACTC+CGG 0.656946 2_1:+2327077 Msa0187590:CDS
CGCTTCTGATAAATTCGTCG+TGG 0.665590 2_1:+2327298 Msa0187590:CDS
CACGGAGGAGAGCACCGCCG+CGG 0.668975 2_1:-2327259 Msa0187600:CDS
TTTACCAGCAATGATGACAG+AGG 0.680041 2_1:-2327618 Msa0187600:intron
TCTCCTCCGTGAGAAAATGG+TGG 0.693512 2_1:+2327271 Msa0187590:CDS
TCGATGGCGAGATCGAGACG+AGG 0.700409 2_1:-2327194 Msa0187600:CDS
AATCTTGTTAAAGGCCGCGG+CGG 0.704955 2_1:+2327245 Msa0187590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTGGAAATATAATTTGATT+AGG + chr2_1:2327396-2327415 Msa0187590:CDS 20.0%
!! GTTGGAAATATAATTTGATT+AGG + chr2_1:2327396-2327415 Msa0187590:CDS 20.0%
! TTAGAATTATCAGTGACATA+GGG - chr2_1:2327485-2327504 Msa0187600:intron 25.0%
! ATTAGAATTATCAGTGACAT+AGG - chr2_1:2327486-2327505 Msa0187600:intron 25.0%
! TTAGAATTATCAGTGACATA+GGG - chr2_1:2327485-2327504 Msa0187600:intron 25.0%
! ATTAGAATTATCAGTGACAT+AGG - chr2_1:2327486-2327505 Msa0187600:intron 25.0%
CCTTTAACAAGATTGAGAAA+CGG - chr2_1:2327239-2327258 Msa0187600:CDS 30.0%
CAAGAATTGTTCAAAGAAGA+AGG + chr2_1:2327422-2327441 Msa0187590:CDS 30.0%
CCTTTAACAAGATTGAGAAA+CGG - chr2_1:2327239-2327258 Msa0187600:CDS 30.0%
CAAGAATTGTTCAAAGAAGA+AGG + chr2_1:2327422-2327441 Msa0187590:CDS 30.0%
! GACATATTCAACGGCTTTAT+CGG - chr2_1:2326997-2327016 Msa0187600:CDS 35.0%
CCGTTTCTCAATCTTGTTAA+AGG + chr2_1:2327236-2327255 Msa0187590:CDS 35.0%
AAATTGAGAGTGGATGAAAG+TGG + chr2_1:2327455-2327474 Msa0187590:CDS 35.0%
! GACATATTCAACGGCTTTAT+CGG - chr2_1:2326997-2327016 Msa0187600:CDS 35.0%
CCGTTTCTCAATCTTGTTAA+AGG + chr2_1:2327236-2327255 Msa0187590:CDS 35.0%
AAATTGAGAGTGGATGAAAG+TGG + chr2_1:2327455-2327474 Msa0187590:CDS 35.0%
AAGAATGAGGAAGAGAGTGA+TGG - chr2_1:2326855-2326874 None:intergenic 40.0%
TGCGTAGTTTAAGAGAGGAA+GGG - chr2_1:2326908-2326927 None:intergenic 40.0%
! TTTGGTGCGTAGTTTAAGAG+AGG - chr2_1:2326913-2326932 None:intergenic 40.0%
! ATATTCAACGGCTTTATCGG+CGG - chr2_1:2326994-2327013 Msa0187600:CDS 40.0%
GCCGTTGAATATGTCAAAAG+CGG + chr2_1:2327002-2327021 Msa0187590:CDS 40.0%
!!! GCCGCTTTTGACATATTCAA+CGG - chr2_1:2327006-2327025 Msa0187600:CDS 40.0%
TGAATATGTCAAAAGCGGCA+TGG + chr2_1:2327007-2327026 Msa0187590:CDS 40.0%
! AAGAGAACGAGCTTGTTCTT+CGG - chr2_1:2327144-2327163 Msa0187600:CDS 40.0%
CACGACGAATTTATCAGAAG+CGG - chr2_1:2327300-2327319 Msa0187600:CDS 40.0%
!! TGGAGGTTGTTCAGTTTTGT+TGG + chr2_1:2327378-2327397 Msa0187590:CDS 40.0%
TGTTGATGCGAAATTGAGAG+TGG + chr2_1:2327445-2327464 Msa0187590:CDS 40.0%
GCAGCATTTGCATCTCTAAT+GGG - chr2_1:2327536-2327555 Msa0187600:intron 40.0%
AGCAGCATTTGCATCTCTAA+TGG - chr2_1:2327537-2327556 Msa0187600:intron 40.0%
ATTAGAGATGCAAATGCTGC+TGG + chr2_1:2327536-2327555 Msa0187590:CDS 40.0%
!! GCATGGTTTGTTCTTGAACA+TGG + chr2_1:2327592-2327611 Msa0187590:CDS 40.0%
TTTACCAGCAATGATGACAG+AGG - chr2_1:2327621-2327640 Msa0187600:intron 40.0%
GTCATCATTGCTGGTAAAAC+TGG + chr2_1:2327623-2327642 Msa0187590:CDS 40.0%
AAGAATGAGGAAGAGAGTGA+TGG - chr2_1:2326855-2326874 None:intergenic 40.0%
TGCGTAGTTTAAGAGAGGAA+GGG - chr2_1:2326908-2326927 None:intergenic 40.0%
! TTTGGTGCGTAGTTTAAGAG+AGG - chr2_1:2326913-2326932 None:intergenic 40.0%
! ATATTCAACGGCTTTATCGG+CGG - chr2_1:2326994-2327013 Msa0187600:CDS 40.0%
GCCGTTGAATATGTCAAAAG+CGG + chr2_1:2327002-2327021 Msa0187590:CDS 40.0%
!!! GCCGCTTTTGACATATTCAA+CGG - chr2_1:2327006-2327025 Msa0187600:CDS 40.0%
TGAATATGTCAAAAGCGGCA+TGG + chr2_1:2327007-2327026 Msa0187590:CDS 40.0%
! AAGAGAACGAGCTTGTTCTT+CGG - chr2_1:2327144-2327163 Msa0187600:CDS 40.0%
CACGACGAATTTATCAGAAG+CGG - chr2_1:2327300-2327319 Msa0187600:CDS 40.0%
!! TGGAGGTTGTTCAGTTTTGT+TGG + chr2_1:2327378-2327397 Msa0187590:CDS 40.0%
TGTTGATGCGAAATTGAGAG+TGG + chr2_1:2327445-2327464 Msa0187590:CDS 40.0%
GCAGCATTTGCATCTCTAAT+GGG - chr2_1:2327536-2327555 Msa0187600:intron 40.0%
AGCAGCATTTGCATCTCTAA+TGG - chr2_1:2327537-2327556 Msa0187600:intron 40.0%
ATTAGAGATGCAAATGCTGC+TGG + chr2_1:2327536-2327555 Msa0187590:CDS 40.0%
!! GCATGGTTTGTTCTTGAACA+TGG + chr2_1:2327592-2327611 Msa0187590:CDS 40.0%
TTTACCAGCAATGATGACAG+AGG - chr2_1:2327621-2327640 Msa0187600:intron 40.0%
GTCATCATTGCTGGTAAAAC+TGG + chr2_1:2327623-2327642 Msa0187590:CDS 40.0%
AATGAGGAAGAGAGTGATGG+TGG - chr2_1:2326852-2326871 None:intergenic 45.0%
!! TGTGGAGGCATTGAAGAATG+AGG - chr2_1:2326868-2326887 None:intergenic 45.0%
GCGTAGTTTAAGAGAGGAAG+GGG - chr2_1:2326907-2326926 None:intergenic 45.0%
GTGCGTAGTTTAAGAGAGGA+AGG - chr2_1:2326909-2326928 None:intergenic 45.0%
!! AGTGAGGGTTATGGCTTTGA+CGG - chr2_1:2326949-2326968 Msa0187600:CDS 45.0%
! TTTGAGGTCGTCTTGAGTGA+GGG - chr2_1:2326964-2326983 Msa0187600:CDS 45.0%
!!! TTTTGAGGTCGTCTTGAGTG+AGG - chr2_1:2326965-2326984 Msa0187600:CDS 45.0%
GAAGAACAAGCTCGTTCTCT+TGG + chr2_1:2327143-2327162 Msa0187590:CDS 45.0%
TGGTATTCCTCTCTCTGTTC+TGG + chr2_1:2327163-2327182 Msa0187590:CDS 45.0%
TTATCGTCCAGAACAGAGAG+AGG - chr2_1:2327173-2327192 Msa0187600:CDS 45.0%
CTCAATCTTGTTAAAGGCCG+CGG + chr2_1:2327242-2327261 Msa0187590:CDS 45.0%
CGCTTCTGATAAATTCGTCG+TGG + chr2_1:2327298-2327317 Msa0187590:CDS 45.0%
CAAAACTGAACAACCTCCAC+CGG - chr2_1:2327377-2327396 Msa0187600:intron 45.0%
AATGAGGAAGAGAGTGATGG+TGG - chr2_1:2326852-2326871 None:intergenic 45.0%
!! TGTGGAGGCATTGAAGAATG+AGG - chr2_1:2326868-2326887 None:intergenic 45.0%
GCGTAGTTTAAGAGAGGAAG+GGG - chr2_1:2326907-2326926 None:intergenic 45.0%
GTGCGTAGTTTAAGAGAGGA+AGG - chr2_1:2326909-2326928 None:intergenic 45.0%
!! AGTGAGGGTTATGGCTTTGA+CGG - chr2_1:2326949-2326968 Msa0187600:CDS 45.0%
! TTTGAGGTCGTCTTGAGTGA+GGG - chr2_1:2326964-2326983 Msa0187600:CDS 45.0%
!!! TTTTGAGGTCGTCTTGAGTG+AGG - chr2_1:2326965-2326984 Msa0187600:CDS 45.0%
GAAGAACAAGCTCGTTCTCT+TGG + chr2_1:2327143-2327162 Msa0187590:CDS 45.0%
TGGTATTCCTCTCTCTGTTC+TGG + chr2_1:2327163-2327182 Msa0187590:CDS 45.0%
TTATCGTCCAGAACAGAGAG+AGG - chr2_1:2327173-2327192 Msa0187600:CDS 45.0%
CTCAATCTTGTTAAAGGCCG+CGG + chr2_1:2327242-2327261 Msa0187590:CDS 45.0%
CGCTTCTGATAAATTCGTCG+TGG + chr2_1:2327298-2327317 Msa0187590:CDS 45.0%
CAAAACTGAACAACCTCCAC+CGG - chr2_1:2327377-2327396 Msa0187600:intron 45.0%
! TGGTGGTGATGAGAGGGATA+AGG - chr2_1:2326835-2326854 None:intergenic 50.0%
!! GAGTGATGGTGGTGATGAGA+GGG - chr2_1:2326841-2326860 None:intergenic 50.0%
!! AGAGTGATGGTGGTGATGAG+AGG - chr2_1:2326842-2326861 None:intergenic 50.0%
!! TGGCTTTGACGGAGAAGGAA+GGG - chr2_1:2326938-2326957 Msa0187600:CDS 50.0%
!! ATGGCTTTGACGGAGAAGGA+AGG - chr2_1:2326939-2326958 Msa0187600:CDS 50.0%
!! GGTTATGGCTTTGACGGAGA+AGG - chr2_1:2326943-2326962 Msa0187600:CDS 50.0%
GTCGTCTTGAGTGAGGGTTA+TGG - chr2_1:2326958-2326977 Msa0187600:CDS 50.0%
!!! TATCGGCGGCGAGTTTTTTG+AGG - chr2_1:2326980-2326999 Msa0187600:CDS 50.0%
GTTGAGAAGTTCGCCGAGTT+TGG - chr2_1:2327075-2327094 Msa0187600:CDS 50.0%
! GATGATGTTGGTGAGTTCGC+CGG - chr2_1:2327099-2327118 Msa0187600:CDS 50.0%
GGCGAACTCACCAACATCAT+CGG + chr2_1:2327098-2327117 Msa0187590:CDS 50.0%
! TCTTCGGTGCGTTTGGAAGT+GGG - chr2_1:2327128-2327147 Msa0187600:CDS 50.0%
! TTCTTCGGTGCGTTTGGAAG+TGG - chr2_1:2327129-2327148 Msa0187600:CDS 50.0%
! AGCTTGTTCTTCGGTGCGTT+TGG - chr2_1:2327135-2327154 Msa0187600:CDS 50.0%
AATCTTGTTAAAGGCCGCGG+CGG + chr2_1:2327245-2327264 Msa0187590:CDS 50.0%
TGCTCTCCTCCGTGAGAAAA+TGG + chr2_1:2327268-2327287 Msa0187590:CDS 50.0%
TCTCCTCCGTGAGAAAATGG+TGG + chr2_1:2327271-2327290 Msa0187590:CDS 50.0%
! CTTCCACCATTTTCTCACGG+AGG - chr2_1:2327277-2327296 Msa0187600:CDS 50.0%
! CGGCTTCCACCATTTTCTCA+CGG - chr2_1:2327280-2327299 Msa0187600:CDS 50.0%
! ACGAAACTGGTCTCCGGTTT+GGG + chr2_1:2327332-2327351 Msa0187590:CDS 50.0%
TAAACCGCTTCCACCCAAAC+CGG - chr2_1:2327348-2327367 Msa0187600:intron 50.0%
GCTGAGATTTCGTCGCTTGA+AGG + chr2_1:2327560-2327579 Msa0187590:CDS 50.0%
GCTACCTCTGTCATCATTGC+TGG + chr2_1:2327614-2327633 Msa0187590:CDS 50.0%
! TGGTGGTGATGAGAGGGATA+AGG - chr2_1:2326835-2326854 None:intergenic 50.0%
!! GAGTGATGGTGGTGATGAGA+GGG - chr2_1:2326841-2326860 None:intergenic 50.0%
!! AGAGTGATGGTGGTGATGAG+AGG - chr2_1:2326842-2326861 None:intergenic 50.0%
!! TGGCTTTGACGGAGAAGGAA+GGG - chr2_1:2326938-2326957 Msa0187600:CDS 50.0%
!! ATGGCTTTGACGGAGAAGGA+AGG - chr2_1:2326939-2326958 Msa0187600:CDS 50.0%
!! GGTTATGGCTTTGACGGAGA+AGG - chr2_1:2326943-2326962 Msa0187600:CDS 50.0%
GTCGTCTTGAGTGAGGGTTA+TGG - chr2_1:2326958-2326977 Msa0187600:CDS 50.0%
!!! TATCGGCGGCGAGTTTTTTG+AGG - chr2_1:2326980-2326999 Msa0187600:CDS 50.0%
GTTGAGAAGTTCGCCGAGTT+TGG - chr2_1:2327075-2327094 Msa0187600:CDS 50.0%
! GATGATGTTGGTGAGTTCGC+CGG - chr2_1:2327099-2327118 Msa0187600:CDS 50.0%
GGCGAACTCACCAACATCAT+CGG + chr2_1:2327098-2327117 Msa0187590:CDS 50.0%
! TCTTCGGTGCGTTTGGAAGT+GGG - chr2_1:2327128-2327147 Msa0187600:CDS 50.0%
! TTCTTCGGTGCGTTTGGAAG+TGG - chr2_1:2327129-2327148 Msa0187600:CDS 50.0%
! AGCTTGTTCTTCGGTGCGTT+TGG - chr2_1:2327135-2327154 Msa0187600:CDS 50.0%
AATCTTGTTAAAGGCCGCGG+CGG + chr2_1:2327245-2327264 Msa0187590:CDS 50.0%
TGCTCTCCTCCGTGAGAAAA+TGG + chr2_1:2327268-2327287 Msa0187590:CDS 50.0%
TCTCCTCCGTGAGAAAATGG+TGG + chr2_1:2327271-2327290 Msa0187590:CDS 50.0%
! CTTCCACCATTTTCTCACGG+AGG - chr2_1:2327277-2327296 Msa0187600:CDS 50.0%
! CGGCTTCCACCATTTTCTCA+CGG - chr2_1:2327280-2327299 Msa0187600:CDS 50.0%
! ACGAAACTGGTCTCCGGTTT+GGG + chr2_1:2327332-2327351 Msa0187590:CDS 50.0%
TAAACCGCTTCCACCCAAAC+CGG - chr2_1:2327348-2327367 Msa0187600:intron 50.0%
GCTGAGATTTCGTCGCTTGA+AGG + chr2_1:2327560-2327579 Msa0187590:CDS 50.0%
GCTACCTCTGTCATCATTGC+TGG + chr2_1:2327614-2327633 Msa0187590:CDS 50.0%
GCGTAGGTTAAGACGTGTGG+AGG - chr2_1:2326883-2326902 None:intergenic 55.0%
GGTGCGTAGGTTAAGACGTG+TGG - chr2_1:2326886-2326905 None:intergenic 55.0%
! TAAGAGAGGAAGGGGTGCGT+AGG - chr2_1:2326899-2326918 None:intergenic 55.0%
GCTTTGACGGAGAAGGAAGG+GGG - chr2_1:2326936-2326955 Msa0187600:CDS 55.0%
! GGCTTTGACGGAGAAGGAAG+GGG - chr2_1:2326937-2326956 Msa0187600:CDS 55.0%
GTCAAAAGCGGCATGGTCCT+CGG + chr2_1:2327014-2327033 Msa0187590:CDS 55.0%
GAGTTTGGAGACGACGAAGG+CGG - chr2_1:2327060-2327079 Msa0187600:CDS 55.0%
GCCTTCGTCGTCTCCAAACT+CGG + chr2_1:2327059-2327078 Msa0187590:CDS 55.0%
CTCGGCGAACTTCTCAACTC+CGG + chr2_1:2327077-2327096 Msa0187590:CDS 55.0%
AGTGGGAACGCCGATGATGT+TGG - chr2_1:2327111-2327130 Msa0187600:CDS 55.0%
GACTTCATCAGCACCGTCGA+TGG - chr2_1:2327213-2327232 Msa0187600:CDS 55.0%
! GACGACACGAAACTGGTCTC+CGG + chr2_1:2327326-2327345 Msa0187590:CDS 55.0%
! CACGAAACTGGTCTCCGGTT+TGG + chr2_1:2327331-2327350 Msa0187590:CDS 55.0%
!! AAACTGGTCTCCGGTTTGGG+TGG + chr2_1:2327335-2327354 Msa0187590:CDS 55.0%
TGGAAGCGGTTTAGCGATGC+CGG + chr2_1:2327355-2327374 Msa0187590:CDS 55.0%
!! CTTGAAGGTGTCGTCGAGCA+TGG + chr2_1:2327575-2327594 Msa0187590:CDS 55.0%
GCGTAGGTTAAGACGTGTGG+AGG - chr2_1:2326883-2326902 None:intergenic 55.0%
GGTGCGTAGGTTAAGACGTG+TGG - chr2_1:2326886-2326905 None:intergenic 55.0%
! TAAGAGAGGAAGGGGTGCGT+AGG - chr2_1:2326899-2326918 None:intergenic 55.0%
GCTTTGACGGAGAAGGAAGG+GGG - chr2_1:2326936-2326955 Msa0187600:CDS 55.0%
! GGCTTTGACGGAGAAGGAAG+GGG - chr2_1:2326937-2326956 Msa0187600:CDS 55.0%
GTCAAAAGCGGCATGGTCCT+CGG + chr2_1:2327014-2327033 Msa0187590:CDS 55.0%
GAGTTTGGAGACGACGAAGG+CGG - chr2_1:2327060-2327079 Msa0187600:CDS 55.0%
GCCTTCGTCGTCTCCAAACT+CGG + chr2_1:2327059-2327078 Msa0187590:CDS 55.0%
CTCGGCGAACTTCTCAACTC+CGG + chr2_1:2327077-2327096 Msa0187590:CDS 55.0%
AGTGGGAACGCCGATGATGT+TGG - chr2_1:2327111-2327130 Msa0187600:CDS 55.0%
GACTTCATCAGCACCGTCGA+TGG - chr2_1:2327213-2327232 Msa0187600:CDS 55.0%
! GACGACACGAAACTGGTCTC+CGG + chr2_1:2327326-2327345 Msa0187590:CDS 55.0%
! CACGAAACTGGTCTCCGGTT+TGG + chr2_1:2327331-2327350 Msa0187590:CDS 55.0%
!! AAACTGGTCTCCGGTTTGGG+TGG + chr2_1:2327335-2327354 Msa0187590:CDS 55.0%
TGGAAGCGGTTTAGCGATGC+CGG + chr2_1:2327355-2327374 Msa0187590:CDS 55.0%
!! CTTGAAGGTGTCGTCGAGCA+TGG + chr2_1:2327575-2327594 Msa0187590:CDS 55.0%
GACGGAGAAGGAAGGGGGTT+TGG - chr2_1:2326931-2326950 Msa0187600:CDS 60.0%
TTTGGAGACGACGAAGGCGG+CGG - chr2_1:2327057-2327076 Msa0187600:CDS 60.0%
GCCGAGTTTGGAGACGACGA+AGG - chr2_1:2327063-2327082 Msa0187600:CDS 60.0%
TCGATGGCGAGATCGAGACG+AGG - chr2_1:2327197-2327216 Msa0187600:CDS 60.0%
CGTCTCGATCTCGCCATCGA+CGG + chr2_1:2327197-2327216 Msa0187590:CDS 60.0%
GGTCGTCGACGACACGAAAC+TGG + chr2_1:2327319-2327338 Msa0187590:CDS 60.0%
!! GTCTCCGGTTTGGGTGGAAG+CGG + chr2_1:2327341-2327360 Msa0187590:CDS 60.0%
AAGCGGTTTAGCGATGCCGG+TGG + chr2_1:2327358-2327377 Msa0187590:CDS 60.0%
GACGGAGAAGGAAGGGGGTT+TGG - chr2_1:2326931-2326950 Msa0187600:CDS 60.0%
TTTGGAGACGACGAAGGCGG+CGG - chr2_1:2327057-2327076 Msa0187600:CDS 60.0%
GCCGAGTTTGGAGACGACGA+AGG - chr2_1:2327063-2327082 Msa0187600:CDS 60.0%
TCGATGGCGAGATCGAGACG+AGG - chr2_1:2327197-2327216 Msa0187600:CDS 60.0%
CGTCTCGATCTCGCCATCGA+CGG + chr2_1:2327197-2327216 Msa0187590:CDS 60.0%
GGTCGTCGACGACACGAAAC+TGG + chr2_1:2327319-2327338 Msa0187590:CDS 60.0%
!! GTCTCCGGTTTGGGTGGAAG+CGG + chr2_1:2327341-2327360 Msa0187590:CDS 60.0%
AAGCGGTTTAGCGATGCCGG+TGG + chr2_1:2327358-2327377 Msa0187590:CDS 60.0%
CGGTTTAGCGATGCCGGTGG+AGG + chr2_1:2327361-2327380 Msa0187590:CDS 65.0%
CGGTTTAGCGATGCCGGTGG+AGG + chr2_1:2327361-2327380 Msa0187590:CDS 65.0%
AGCGGCATGGTCCTCGGCCT+CGG + chr2_1:2327020-2327039 Msa0187590:CDS 70.0%
ATGGTCCTCGGCCTCGGCAC+CGG + chr2_1:2327026-2327045 Msa0187590:CDS 70.0%
AGCGGCATGGTCCTCGGCCT+CGG + chr2_1:2327020-2327039 Msa0187590:CDS 70.0%
ATGGTCCTCGGCCTCGGCAC+CGG + chr2_1:2327026-2327045 Msa0187590:CDS 70.0%
GACGAAGGCGGCGGTGGAGC+CGG - chr2_1:2327048-2327067 Msa0187600:CDS 75.0%
GGAGACGACGAAGGCGGCGG+TGG - chr2_1:2327054-2327073 Msa0187600:CDS 75.0%
!! CACGGAGGAGAGCACCGCCG+CGG - chr2_1:2327262-2327281 Msa0187600:CDS 75.0%
GACGAAGGCGGCGGTGGAGC+CGG - chr2_1:2327048-2327067 Msa0187600:CDS 75.0%
GGAGACGACGAAGGCGGCGG+TGG - chr2_1:2327054-2327073 Msa0187600:CDS 75.0%
!! CACGGAGGAGAGCACCGCCG+CGG - chr2_1:2327262-2327281 Msa0187600:CDS 75.0%
!! TGGAGCCGGTGCCGAGGCCG+AGG - chr2_1:2327034-2327053 Msa0187600:CDS 80.0%
!! TGGAGCCGGTGCCGAGGCCG+AGG - chr2_1:2327034-2327053 Msa0187600:CDS 80.0%
!! CGGCGGTGGAGCCGGTGCCG+AGG - chr2_1:2327040-2327059 Msa0187600:CDS 85.0%
!! CGGCGGTGGAGCCGGTGCCG+AGG - chr2_1:2327040-2327059 Msa0187600:CDS 85.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 2326825 2327667 2326825 ID=Msa0187590;Name=Msa0187590
chr2_1 mRNA 2326825 2327667 2326825 ID=Msa0187590-mRNA-1;Parent=Msa0187590;Name=Msa0187590-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|280
chr2_1 exon 2326825 2327667 2326825 ID=Msa0187590-mRNA-1:exon:1054;Parent=Msa0187590-mRNA-1
chr2_1 CDS 2326825 2327667 2326825 ID=Msa0187590-mRNA-1:cds;Parent=Msa0187590-mRNA-1
Gene Sequence

>Msa0187590

ATGGCATCCTTATCCCTCTCATCACCACCATCACTCTCTTCCTCATTCTTCAATGCCTCCACACGTCTTAACCTACGCACCCCTTCCTCTCTTAAACTACGCACCAAACCCCCTTCCTTCTCCGTCAAAGCCATAACCCTCACTCAAGACGACCTCAAAAAACTCGCCGCCGATAAAGCCGTTGAATATGTCAAAAGCGGCATGGTCCTCGGCCTCGGCACCGGCTCCACCGCCGCCTTCGTCGTCTCCAAACTCGGCGAACTTCTCAACTCCGGCGAACTCACCAACATCATCGGCGTTCCCACTTCCAAACGCACCGAAGAACAAGCTCGTTCTCTTGGTATTCCTCTCTCTGTTCTGGACGATAATCCTCGTCTCGATCTCGCCATCGACGGTGCTGATGAAGTCGATCCGTTTCTCAATCTTGTTAAAGGCCGCGGCGGTGCTCTCCTCCGTGAGAAAATGGTGGAAGCCGCTTCTGATAAATTCGTCGTGGTCGTCGACGACACGAAACTGGTCTCCGGTTTGGGTGGAAGCGGTTTAGCGATGCCGGTGGAGGTTGTTCAGTTTTGTTGGAAATATAATTTGATTAGGCTTCAAGAATTGTTCAAAGAAGAAGGTGTTGATGCGAAATTGAGAGTGGATGAAAGTGGAAAACCCTATGTCACTGATAATTCTAATTACATTGTTGATTTGTATTTTAAGACTCCCATTAGAGATGCAAATGCTGCTGGAGCTGAGATTTCGTCGCTTGAAGGTGTCGTCGAGCATGGTTTGTTCTTGAACATGGCTACCTCTGTCATCATTGCTGGTAAAACTGGTGTTGAAGTGAAAGACAAGTGA

Protein sequence

>Msa0187590

MASLSLSSPPSLSSSFFNASTRLNLRTPSSLKLRTKPPSFSVKAITLTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVSKLGELLNSGELTNIIGVPTSKRTEEQARSLGIPLSVLDDNPRLDLAIDGADEVDPFLNLVKGRGGALLREKMVEAASDKFVVVVDDTKLVSGLGGSGLAMPVEVVQFCWKYNLIRLQELFKEEGVDAKLRVDESGKPYVTDNSNYIVDLYFKTPIRDANAAGAEISSLEGVVEHGLFLNMATSVIIAGKTGVEVKDK*