AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 51 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTTTCTCAATCTTGTTAA+AGG 0.131907 7_3:-81296874 None:intergenic
TACATATTAATTGCCTATAC+TGG 0.243792 7_3:-81296218 None:intergenic
GACATATTCAACGGCTTTAT+CGG 0.261652 7_3:+81297116 Msa1129300:CDS
GTTGAGAAGTTCGCCGAGTT+TGG 0.275002 7_3:+81297038 Msa1129300:CDS
TGGTATTCCTCTCTCTGTTC+TGG 0.303086 7_3:-81296947 None:intergenic
AGCTTGTTCTTCGGTGCGTT+TGG 0.324267 7_3:+81296978 Msa1129300:CDS
TGCTCTCCTCCGTGAGAAAA+TGG 0.332089 7_3:-81296842 None:intergenic
AGCGGCATGGTCCTCGGCCT+CGG 0.399773 7_3:-81297090 None:intergenic
TTCTTCGGTGCGTTTGGAAG+TGG 0.409826 7_3:+81296984 Msa1129300:CDS
GACGAAGGCGGCGGTGGAGC+CGG 0.434905 7_3:+81297065 Msa1129300:CDS
AGTGAGGGTTATGGCTTTGA+CGG 0.436346 7_3:+81297164 Msa1129300:CDS
CTCAATCTTGTTAAAGGCCG+CGG 0.449503 7_3:-81296868 None:intergenic
CAACAAACACATCCCAGTAT+AGG 0.459372 7_3:+81296205 Msa1129300:five_prime_UTR
GTCGTCTTGAGTGAGGGTTA+TGG 0.462715 7_3:+81297155 Msa1129300:CDS
TGGAGCCGGTGCCGAGGCCG+AGG 0.476978 7_3:+81297079 Msa1129300:CDS
GGAGACGACGAAGGCGGCGG+TGG 0.479468 7_3:+81297059 Msa1129300:CDS
ATGGTCCTCGGCCTCGGCAC+CGG 0.489708 7_3:-81297084 None:intergenic
GAAGAACAAGCTCGTTCTCT+TGG 0.494473 7_3:-81296967 None:intergenic
GTCAAAAGCGGCATGGTCCT+CGG 0.496677 7_3:-81297096 None:intergenic
AAGAGAACGAGCTTGTTCTT+CGG 0.503417 7_3:+81296969 Msa1129300:CDS
GGCTTTGACGGAGAAGGAAG+GGG 0.506146 7_3:+81297176 Msa1129300:CDS
TCTTCGGTGCGTTTGGAAGT+GGG 0.512477 7_3:+81296985 Msa1129300:CDS
TGGCTTTGACGGAGAAGGAA+GGG 0.523724 7_3:+81297175 Msa1129300:CDS
GGTTATGGCTTTGACGGAGA+AGG 0.526579 7_3:+81297170 Msa1129300:CDS
CGTCTCGATCTCGCCATCGA+CGG 0.527285 7_3:-81296913 None:intergenic
CGGCGGTGGAGCCGGTGCCG+AGG 0.537408 7_3:+81297073 Msa1129300:CDS
GATGATGTTGGTGAGTTCGC+CGG 0.539899 7_3:+81297014 Msa1129300:CDS
GCCTTCGTCGTCTCCAAACT+CGG 0.546205 7_3:-81297051 None:intergenic
TTTGAGGTCGTCTTGAGTGA+GGG 0.553709 7_3:+81297149 Msa1129300:CDS
GGCGAACTCACCAACATCAT+CGG 0.560538 7_3:-81297012 None:intergenic
ATGGCTTTGACGGAGAAGGA+AGG 0.560597 7_3:+81297174 Msa1129300:CDS
TTTGGAGACGACGAAGGCGG+CGG 0.566766 7_3:+81297056 Msa1129300:CDS
ACATATTAATTGCCTATACT+GGG 0.570240 7_3:-81296217 None:intergenic
GCCGTTGAATATGTCAAAAG+CGG 0.580001 7_3:-81297108 None:intergenic
ATATTCAACGGCTTTATCGG+CGG 0.581768 7_3:+81297119 Msa1129300:CDS
CACGACGAATTTATCAGAAG+CGG 0.584428 7_3:+81296813 Msa1129300:CDS
CCTTTAACAAGATTGAGAAA+CGG 0.589530 7_3:+81296874 Msa1129300:CDS
TTATCGTCCAGAACAGAGAG+AGG 0.606235 7_3:+81296940 Msa1129300:CDS
GCTTTGACGGAGAAGGAAGG+GGG 0.608310 7_3:+81297177 Msa1129300:CDS
GACTTCATCAGCACCGTCGA+TGG 0.609689 7_3:+81296900 Msa1129300:CDS
AGTGGGAACGCCGATGATGT+TGG 0.637767 7_3:+81297002 Msa1129300:CDS
GCCGAGTTTGGAGACGACGA+AGG 0.645857 7_3:+81297050 Msa1129300:CDS
TGAATATGTCAAAAGCGGCA+TGG 0.650597 7_3:-81297103 None:intergenic
GAGTTTGGAGACGACGAAGG+CGG 0.656291 7_3:+81297053 Msa1129300:CDS
CTCGGCGAACTTCTCAACTC+CGG 0.656946 7_3:-81297033 None:intergenic
CGCTTCTGATAAATTCGTCG+TGG 0.665590 7_3:-81296812 None:intergenic
CACGGAGGAGAGCACCGCCG+CGG 0.668975 7_3:+81296851 Msa1129300:CDS
TGCATGCAATAGCTAAGATG+TGG 0.673956 7_3:-81296160 None:intergenic
TCTCCTCCGTGAGAAAATGG+TGG 0.693512 7_3:-81296839 None:intergenic
TCGATGGCGAGATCGAGACG+AGG 0.700409 7_3:+81296916 Msa1129300:CDS
AATCTTGTTAAAGGCCGCGG+CGG 0.704955 7_3:-81296865 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTGTACAATTGTTTTATT+TGG - chr7_3:81296393-81296412 None:intergenic 20.0%
!! GTTGGAAATATAATTTGATT+AGG - chr7_3:81296717-81296736 None:intergenic 20.0%
!!! TGTTGTACAATTGTTTTATT+TGG - chr7_3:81296393-81296412 None:intergenic 20.0%
!! GTTGGAAATATAATTTGATT+AGG - chr7_3:81296717-81296736 None:intergenic 20.0%
! ACATATTAATTGCCTATACT+GGG - chr7_3:81296220-81296239 None:intergenic 25.0%
! TACATATTAATTGCCTATAC+TGG - chr7_3:81296221-81296240 None:intergenic 25.0%
! ATTAGAATTATCAGTGACAT+AGG + chr7_3:81296627-81296646 Msa1129300:intron 25.0%
! TTAGAATTATCAGTGACATA+GGG + chr7_3:81296628-81296647 Msa1129300:intron 25.0%
! ACATATTAATTGCCTATACT+GGG - chr7_3:81296220-81296239 None:intergenic 25.0%
! TACATATTAATTGCCTATAC+TGG - chr7_3:81296221-81296240 None:intergenic 25.0%
! ATTAGAATTATCAGTGACAT+AGG + chr7_3:81296627-81296646 Msa1129300:intron 25.0%
! TTAGAATTATCAGTGACATA+GGG + chr7_3:81296628-81296647 Msa1129300:intron 25.0%
!!! AGATGTGGAAGTGTTTTATA+TGG - chr7_3:81296148-81296167 None:intergenic 30.0%
TTTGTGATCAATATGAGAGA+GGG - chr7_3:81296321-81296340 None:intergenic 30.0%
! TTTTGTGATCAATATGAGAG+AGG - chr7_3:81296322-81296341 None:intergenic 30.0%
CAAGAATTGTTCAAAGAAGA+AGG - chr7_3:81296691-81296710 None:intergenic 30.0%
CCTTTAACAAGATTGAGAAA+CGG + chr7_3:81296874-81296893 Msa1129300:CDS 30.0%
!!! AGATGTGGAAGTGTTTTATA+TGG - chr7_3:81296148-81296167 None:intergenic 30.0%
TTTGTGATCAATATGAGAGA+GGG - chr7_3:81296321-81296340 None:intergenic 30.0%
! TTTTGTGATCAATATGAGAG+AGG - chr7_3:81296322-81296341 None:intergenic 30.0%
CAAGAATTGTTCAAAGAAGA+AGG - chr7_3:81296691-81296710 None:intergenic 30.0%
CCTTTAACAAGATTGAGAAA+CGG + chr7_3:81296874-81296893 Msa1129300:CDS 30.0%
GAGAGGGAAATAAATGAAGA+AGG - chr7_3:81296305-81296324 None:intergenic 35.0%
GTGAAAGACAAGTGATTCAT+TGG - chr7_3:81296460-81296479 None:intergenic 35.0%
AAATTGAGAGTGGATGAAAG+TGG - chr7_3:81296658-81296677 None:intergenic 35.0%
CCGTTTCTCAATCTTGTTAA+AGG - chr7_3:81296877-81296896 None:intergenic 35.0%
! GACATATTCAACGGCTTTAT+CGG + chr7_3:81297116-81297135 Msa1129300:CDS 35.0%
GAGAGGGAAATAAATGAAGA+AGG - chr7_3:81296305-81296324 None:intergenic 35.0%
GTGAAAGACAAGTGATTCAT+TGG - chr7_3:81296460-81296479 None:intergenic 35.0%
AAATTGAGAGTGGATGAAAG+TGG - chr7_3:81296658-81296677 None:intergenic 35.0%
CCGTTTCTCAATCTTGTTAA+AGG - chr7_3:81296877-81296896 None:intergenic 35.0%
! GACATATTCAACGGCTTTAT+CGG + chr7_3:81297116-81297135 Msa1129300:CDS 35.0%
TGCATGCAATAGCTAAGATG+TGG - chr7_3:81296163-81296182 None:intergenic 40.0%
CAACAAACACATCCCAGTAT+AGG + chr7_3:81296205-81296224 Msa1129300:five_prime_UTR 40.0%
GTCATCATTGCTGGTAAAAC+TGG - chr7_3:81296490-81296509 None:intergenic 40.0%
TTTACCAGCAATGATGACAG+AGG + chr7_3:81296492-81296511 Msa1129300:intron 40.0%
!! GCATGGTTTGTTCTTGAACA+TGG - chr7_3:81296521-81296540 None:intergenic 40.0%
ATTAGAGATGCAAATGCTGC+TGG - chr7_3:81296577-81296596 None:intergenic 40.0%
AGCAGCATTTGCATCTCTAA+TGG + chr7_3:81296576-81296595 Msa1129300:intron 40.0%
GCAGCATTTGCATCTCTAAT+GGG + chr7_3:81296577-81296596 Msa1129300:intron 40.0%
TGTTGATGCGAAATTGAGAG+TGG - chr7_3:81296668-81296687 None:intergenic 40.0%
!! TGGAGGTTGTTCAGTTTTGT+TGG - chr7_3:81296735-81296754 None:intergenic 40.0%
CACGACGAATTTATCAGAAG+CGG + chr7_3:81296813-81296832 Msa1129300:CDS 40.0%
! AAGAGAACGAGCTTGTTCTT+CGG + chr7_3:81296969-81296988 Msa1129300:CDS 40.0%
TGAATATGTCAAAAGCGGCA+TGG - chr7_3:81297106-81297125 None:intergenic 40.0%
!!! GCCGCTTTTGACATATTCAA+CGG + chr7_3:81297107-81297126 Msa1129300:CDS 40.0%
GCCGTTGAATATGTCAAAAG+CGG - chr7_3:81297111-81297130 None:intergenic 40.0%
! ATATTCAACGGCTTTATCGG+CGG + chr7_3:81297119-81297138 Msa1129300:CDS 40.0%
TGCATGCAATAGCTAAGATG+TGG - chr7_3:81296163-81296182 None:intergenic 40.0%
CAACAAACACATCCCAGTAT+AGG + chr7_3:81296205-81296224 Msa1129300:five_prime_UTR 40.0%
GTCATCATTGCTGGTAAAAC+TGG - chr7_3:81296490-81296509 None:intergenic 40.0%
TTTACCAGCAATGATGACAG+AGG + chr7_3:81296492-81296511 Msa1129300:intron 40.0%
!! GCATGGTTTGTTCTTGAACA+TGG - chr7_3:81296521-81296540 None:intergenic 40.0%
ATTAGAGATGCAAATGCTGC+TGG - chr7_3:81296577-81296596 None:intergenic 40.0%
AGCAGCATTTGCATCTCTAA+TGG + chr7_3:81296576-81296595 Msa1129300:intron 40.0%
GCAGCATTTGCATCTCTAAT+GGG + chr7_3:81296577-81296596 Msa1129300:intron 40.0%
TGTTGATGCGAAATTGAGAG+TGG - chr7_3:81296668-81296687 None:intergenic 40.0%
!! TGGAGGTTGTTCAGTTTTGT+TGG - chr7_3:81296735-81296754 None:intergenic 40.0%
CACGACGAATTTATCAGAAG+CGG + chr7_3:81296813-81296832 Msa1129300:CDS 40.0%
! AAGAGAACGAGCTTGTTCTT+CGG + chr7_3:81296969-81296988 Msa1129300:CDS 40.0%
TGAATATGTCAAAAGCGGCA+TGG - chr7_3:81297106-81297125 None:intergenic 40.0%
!!! GCCGCTTTTGACATATTCAA+CGG + chr7_3:81297107-81297126 Msa1129300:CDS 40.0%
GCCGTTGAATATGTCAAAAG+CGG - chr7_3:81297111-81297130 None:intergenic 40.0%
! ATATTCAACGGCTTTATCGG+CGG + chr7_3:81297119-81297138 Msa1129300:CDS 40.0%
CAAAACTGAACAACCTCCAC+CGG + chr7_3:81296736-81296755 Msa1129300:intron 45.0%
CGCTTCTGATAAATTCGTCG+TGG - chr7_3:81296815-81296834 None:intergenic 45.0%
CTCAATCTTGTTAAAGGCCG+CGG - chr7_3:81296871-81296890 None:intergenic 45.0%
TTATCGTCCAGAACAGAGAG+AGG + chr7_3:81296940-81296959 Msa1129300:CDS 45.0%
TGGTATTCCTCTCTCTGTTC+TGG - chr7_3:81296950-81296969 None:intergenic 45.0%
GAAGAACAAGCTCGTTCTCT+TGG - chr7_3:81296970-81296989 None:intergenic 45.0%
!!! TTTTGAGGTCGTCTTGAGTG+AGG + chr7_3:81297148-81297167 Msa1129300:CDS 45.0%
! TTTGAGGTCGTCTTGAGTGA+GGG + chr7_3:81297149-81297168 Msa1129300:CDS 45.0%
!! AGTGAGGGTTATGGCTTTGA+CGG + chr7_3:81297164-81297183 Msa1129300:CDS 45.0%
CAAAACTGAACAACCTCCAC+CGG + chr7_3:81296736-81296755 Msa1129300:intron 45.0%
CGCTTCTGATAAATTCGTCG+TGG - chr7_3:81296815-81296834 None:intergenic 45.0%
CTCAATCTTGTTAAAGGCCG+CGG - chr7_3:81296871-81296890 None:intergenic 45.0%
TTATCGTCCAGAACAGAGAG+AGG + chr7_3:81296940-81296959 Msa1129300:CDS 45.0%
TGGTATTCCTCTCTCTGTTC+TGG - chr7_3:81296950-81296969 None:intergenic 45.0%
GAAGAACAAGCTCGTTCTCT+TGG - chr7_3:81296970-81296989 None:intergenic 45.0%
!!! TTTTGAGGTCGTCTTGAGTG+AGG + chr7_3:81297148-81297167 Msa1129300:CDS 45.0%
! TTTGAGGTCGTCTTGAGTGA+GGG + chr7_3:81297149-81297168 Msa1129300:CDS 45.0%
!! AGTGAGGGTTATGGCTTTGA+CGG + chr7_3:81297164-81297183 Msa1129300:CDS 45.0%
GCTACCTCTGTCATCATTGC+TGG - chr7_3:81296499-81296518 None:intergenic 50.0%
GCTGAGATTTCGTCGCTTGA+AGG - chr7_3:81296553-81296572 None:intergenic 50.0%
TAAACCGCTTCCACCCAAAC+CGG + chr7_3:81296765-81296784 Msa1129300:intron 50.0%
! ACGAAACTGGTCTCCGGTTT+GGG - chr7_3:81296781-81296800 None:intergenic 50.0%
! CGGCTTCCACCATTTTCTCA+CGG + chr7_3:81296833-81296852 Msa1129300:CDS 50.0%
! CTTCCACCATTTTCTCACGG+AGG + chr7_3:81296836-81296855 Msa1129300:CDS 50.0%
TCTCCTCCGTGAGAAAATGG+TGG - chr7_3:81296842-81296861 None:intergenic 50.0%
TGCTCTCCTCCGTGAGAAAA+TGG - chr7_3:81296845-81296864 None:intergenic 50.0%
AATCTTGTTAAAGGCCGCGG+CGG - chr7_3:81296868-81296887 None:intergenic 50.0%
! AGCTTGTTCTTCGGTGCGTT+TGG + chr7_3:81296978-81296997 Msa1129300:CDS 50.0%
! TTCTTCGGTGCGTTTGGAAG+TGG + chr7_3:81296984-81297003 Msa1129300:CDS 50.0%
! TCTTCGGTGCGTTTGGAAGT+GGG + chr7_3:81296985-81297004 Msa1129300:CDS 50.0%
GGCGAACTCACCAACATCAT+CGG - chr7_3:81297015-81297034 None:intergenic 50.0%
! GATGATGTTGGTGAGTTCGC+CGG + chr7_3:81297014-81297033 Msa1129300:CDS 50.0%
GTTGAGAAGTTCGCCGAGTT+TGG + chr7_3:81297038-81297057 Msa1129300:CDS 50.0%
!!! TATCGGCGGCGAGTTTTTTG+AGG + chr7_3:81297133-81297152 Msa1129300:CDS 50.0%
GTCGTCTTGAGTGAGGGTTA+TGG + chr7_3:81297155-81297174 Msa1129300:CDS 50.0%
!! GGTTATGGCTTTGACGGAGA+AGG + chr7_3:81297170-81297189 Msa1129300:CDS 50.0%
!! ATGGCTTTGACGGAGAAGGA+AGG + chr7_3:81297174-81297193 Msa1129300:CDS 50.0%
!! TGGCTTTGACGGAGAAGGAA+GGG + chr7_3:81297175-81297194 Msa1129300:CDS 50.0%
GCTACCTCTGTCATCATTGC+TGG - chr7_3:81296499-81296518 None:intergenic 50.0%
GCTGAGATTTCGTCGCTTGA+AGG - chr7_3:81296553-81296572 None:intergenic 50.0%
TAAACCGCTTCCACCCAAAC+CGG + chr7_3:81296765-81296784 Msa1129300:intron 50.0%
! ACGAAACTGGTCTCCGGTTT+GGG - chr7_3:81296781-81296800 None:intergenic 50.0%
! CGGCTTCCACCATTTTCTCA+CGG + chr7_3:81296833-81296852 Msa1129300:CDS 50.0%
! CTTCCACCATTTTCTCACGG+AGG + chr7_3:81296836-81296855 Msa1129300:CDS 50.0%
TCTCCTCCGTGAGAAAATGG+TGG - chr7_3:81296842-81296861 None:intergenic 50.0%
TGCTCTCCTCCGTGAGAAAA+TGG - chr7_3:81296845-81296864 None:intergenic 50.0%
AATCTTGTTAAAGGCCGCGG+CGG - chr7_3:81296868-81296887 None:intergenic 50.0%
! AGCTTGTTCTTCGGTGCGTT+TGG + chr7_3:81296978-81296997 Msa1129300:CDS 50.0%
! TTCTTCGGTGCGTTTGGAAG+TGG + chr7_3:81296984-81297003 Msa1129300:CDS 50.0%
! TCTTCGGTGCGTTTGGAAGT+GGG + chr7_3:81296985-81297004 Msa1129300:CDS 50.0%
GGCGAACTCACCAACATCAT+CGG - chr7_3:81297015-81297034 None:intergenic 50.0%
! GATGATGTTGGTGAGTTCGC+CGG + chr7_3:81297014-81297033 Msa1129300:CDS 50.0%
GTTGAGAAGTTCGCCGAGTT+TGG + chr7_3:81297038-81297057 Msa1129300:CDS 50.0%
!!! TATCGGCGGCGAGTTTTTTG+AGG + chr7_3:81297133-81297152 Msa1129300:CDS 50.0%
GTCGTCTTGAGTGAGGGTTA+TGG + chr7_3:81297155-81297174 Msa1129300:CDS 50.0%
!! GGTTATGGCTTTGACGGAGA+AGG + chr7_3:81297170-81297189 Msa1129300:CDS 50.0%
!! ATGGCTTTGACGGAGAAGGA+AGG + chr7_3:81297174-81297193 Msa1129300:CDS 50.0%
!! TGGCTTTGACGGAGAAGGAA+GGG + chr7_3:81297175-81297194 Msa1129300:CDS 50.0%
!! CTTGAAGGTGTCGTCGAGCA+TGG - chr7_3:81296538-81296557 None:intergenic 55.0%
TGGAAGCGGTTTAGCGATGC+CGG - chr7_3:81296758-81296777 None:intergenic 55.0%
!! AAACTGGTCTCCGGTTTGGG+TGG - chr7_3:81296778-81296797 None:intergenic 55.0%
! CACGAAACTGGTCTCCGGTT+TGG - chr7_3:81296782-81296801 None:intergenic 55.0%
! GACGACACGAAACTGGTCTC+CGG - chr7_3:81296787-81296806 None:intergenic 55.0%
GACTTCATCAGCACCGTCGA+TGG + chr7_3:81296900-81296919 Msa1129300:CDS 55.0%
AGTGGGAACGCCGATGATGT+TGG + chr7_3:81297002-81297021 Msa1129300:CDS 55.0%
CTCGGCGAACTTCTCAACTC+CGG - chr7_3:81297036-81297055 None:intergenic 55.0%
GCCTTCGTCGTCTCCAAACT+CGG - chr7_3:81297054-81297073 None:intergenic 55.0%
GAGTTTGGAGACGACGAAGG+CGG + chr7_3:81297053-81297072 Msa1129300:CDS 55.0%
GTCAAAAGCGGCATGGTCCT+CGG - chr7_3:81297099-81297118 None:intergenic 55.0%
! GGCTTTGACGGAGAAGGAAG+GGG + chr7_3:81297176-81297195 Msa1129300:CDS 55.0%
GCTTTGACGGAGAAGGAAGG+GGG + chr7_3:81297177-81297196 Msa1129300:CDS 55.0%
!! CTTGAAGGTGTCGTCGAGCA+TGG - chr7_3:81296538-81296557 None:intergenic 55.0%
TGGAAGCGGTTTAGCGATGC+CGG - chr7_3:81296758-81296777 None:intergenic 55.0%
!! AAACTGGTCTCCGGTTTGGG+TGG - chr7_3:81296778-81296797 None:intergenic 55.0%
! CACGAAACTGGTCTCCGGTT+TGG - chr7_3:81296782-81296801 None:intergenic 55.0%
! GACGACACGAAACTGGTCTC+CGG - chr7_3:81296787-81296806 None:intergenic 55.0%
GACTTCATCAGCACCGTCGA+TGG + chr7_3:81296900-81296919 Msa1129300:CDS 55.0%
AGTGGGAACGCCGATGATGT+TGG + chr7_3:81297002-81297021 Msa1129300:CDS 55.0%
CTCGGCGAACTTCTCAACTC+CGG - chr7_3:81297036-81297055 None:intergenic 55.0%
GCCTTCGTCGTCTCCAAACT+CGG - chr7_3:81297054-81297073 None:intergenic 55.0%
GAGTTTGGAGACGACGAAGG+CGG + chr7_3:81297053-81297072 Msa1129300:CDS 55.0%
GTCAAAAGCGGCATGGTCCT+CGG - chr7_3:81297099-81297118 None:intergenic 55.0%
! GGCTTTGACGGAGAAGGAAG+GGG + chr7_3:81297176-81297195 Msa1129300:CDS 55.0%
GCTTTGACGGAGAAGGAAGG+GGG + chr7_3:81297177-81297196 Msa1129300:CDS 55.0%
AAGCGGTTTAGCGATGCCGG+TGG - chr7_3:81296755-81296774 None:intergenic 60.0%
!! GTCTCCGGTTTGGGTGGAAG+CGG - chr7_3:81296772-81296791 None:intergenic 60.0%
GGTCGTCGACGACACGAAAC+TGG - chr7_3:81296794-81296813 None:intergenic 60.0%
CGTCTCGATCTCGCCATCGA+CGG - chr7_3:81296916-81296935 None:intergenic 60.0%
TCGATGGCGAGATCGAGACG+AGG + chr7_3:81296916-81296935 Msa1129300:CDS 60.0%
GCCGAGTTTGGAGACGACGA+AGG + chr7_3:81297050-81297069 Msa1129300:CDS 60.0%
TTTGGAGACGACGAAGGCGG+CGG + chr7_3:81297056-81297075 Msa1129300:CDS 60.0%
GACGGAGAAGGAAGGGGGTT+TGG + chr7_3:81297182-81297201 Msa1129300:CDS 60.0%
!! AGGAAGGGGGTTTGGTGCGT+AGG + chr7_3:81297190-81297209 Msa1129300:CDS 60.0%
AAGCGGTTTAGCGATGCCGG+TGG - chr7_3:81296755-81296774 None:intergenic 60.0%
!! GTCTCCGGTTTGGGTGGAAG+CGG - chr7_3:81296772-81296791 None:intergenic 60.0%
GGTCGTCGACGACACGAAAC+TGG - chr7_3:81296794-81296813 None:intergenic 60.0%
CGTCTCGATCTCGCCATCGA+CGG - chr7_3:81296916-81296935 None:intergenic 60.0%
TCGATGGCGAGATCGAGACG+AGG + chr7_3:81296916-81296935 Msa1129300:CDS 60.0%
GCCGAGTTTGGAGACGACGA+AGG + chr7_3:81297050-81297069 Msa1129300:CDS 60.0%
TTTGGAGACGACGAAGGCGG+CGG + chr7_3:81297056-81297075 Msa1129300:CDS 60.0%
GACGGAGAAGGAAGGGGGTT+TGG + chr7_3:81297182-81297201 Msa1129300:CDS 60.0%
CGGTTTAGCGATGCCGGTGG+AGG - chr7_3:81296752-81296771 None:intergenic 65.0%
CGGTTTAGCGATGCCGGTGG+AGG - chr7_3:81296752-81296771 None:intergenic 65.0%
ATGGTCCTCGGCCTCGGCAC+CGG - chr7_3:81297087-81297106 None:intergenic 70.0%
AGCGGCATGGTCCTCGGCCT+CGG - chr7_3:81297093-81297112 None:intergenic 70.0%
ATGGTCCTCGGCCTCGGCAC+CGG - chr7_3:81297087-81297106 None:intergenic 70.0%
AGCGGCATGGTCCTCGGCCT+CGG - chr7_3:81297093-81297112 None:intergenic 70.0%
!! CACGGAGGAGAGCACCGCCG+CGG + chr7_3:81296851-81296870 Msa1129300:CDS 75.0%
GGAGACGACGAAGGCGGCGG+TGG + chr7_3:81297059-81297078 Msa1129300:CDS 75.0%
GACGAAGGCGGCGGTGGAGC+CGG + chr7_3:81297065-81297084 Msa1129300:CDS 75.0%
!! CACGGAGGAGAGCACCGCCG+CGG + chr7_3:81296851-81296870 Msa1129300:CDS 75.0%
GGAGACGACGAAGGCGGCGG+TGG + chr7_3:81297059-81297078 Msa1129300:CDS 75.0%
GACGAAGGCGGCGGTGGAGC+CGG + chr7_3:81297065-81297084 Msa1129300:CDS 75.0%
!! TGGAGCCGGTGCCGAGGCCG+AGG + chr7_3:81297079-81297098 Msa1129300:CDS 80.0%
!! TGGAGCCGGTGCCGAGGCCG+AGG + chr7_3:81297079-81297098 Msa1129300:CDS 80.0%
!! CGGCGGTGGAGCCGGTGCCG+AGG + chr7_3:81297073-81297092 Msa1129300:CDS 85.0%
!! CGGCGGTGGAGCCGGTGCCG+AGG + chr7_3:81297073-81297092 Msa1129300:CDS 85.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81296137 81297211 81296137 ID=Msa1129300;Name=Msa1129300
chr7_3 mRNA 81296137 81297211 81296137 ID=Msa1129300-mRNA-1;Parent=Msa1129300;Name=Msa1129300-mRNA-1;_AED=0.37;_eAED=0.87;_QI=99|0|0.5|1|0|0|2|0|142
chr7_3 exon 81296137 81296247 81296137 ID=Msa1129300-mRNA-1:exon:23596;Parent=Msa1129300-mRNA-1
chr7_3 exon 81296795 81297211 81296795 ID=Msa1129300-mRNA-1:exon:23597;Parent=Msa1129300-mRNA-1
chr7_3 five_prime_UTR 81296137 81296235 81296137 ID=Msa1129300-mRNA-1:five_prime_utr;Parent=Msa1129300-mRNA-1
chr7_3 CDS 81296236 81296247 81296236 ID=Msa1129300-mRNA-1:cds;Parent=Msa1129300-mRNA-1
chr7_3 CDS 81296795 81297211 81296795 ID=Msa1129300-mRNA-1:cds;Parent=Msa1129300-mRNA-1
Gene Sequence

>Msa1129300

ATGTATATGAATTTTCGTGTCGTCGACGACCACGACGAATTTATCAGAAGCGGCTTCCACCATTTTCTCACGGAGGAGAGCACCGCCGCGGCCTTTAACAAGATTGAGAAACGGATCGACTTCATCAGCACCGTCGATGGCGAGATCGAGACGAGGATTATCGTCCAGAACAGAGAGAGGAATACCAAGAGAACGAGCTTGTTCTTCGGTGCGTTTGGAAGTGGGAACGCCGATGATGTTGGTGAGTTCGCCGGAGTTGAGAAGTTCGCCGAGTTTGGAGACGACGAAGGCGGCGGTGGAGCCGGTGCCGAGGCCGAGGACCATGCCGCTTTTGACATATTCAACGGCTTTATCGGCGGCGAGTTTTTTGAGGTCGTCTTGAGTGAGGGTTATGGCTTTGACGGAGAAGGAAGGGGGTTTGGTGCGTAG

Protein sequence

>Msa1129300

MYMNFRVVDDHDEFIRSGFHHFLTEESTAAAFNKIEKRIDFISTVDGEIETRIIVQNRERNTKRTSLFFGAFGSGNADDVGEFAGVEKFAEFGDDEGGGGAGAEAEDHAAFDIFNGFIGGEFFEVVLSEGYGFDGEGRGFGA*