Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982190 | XP_003591945.1 | 98.519 | 270 | 4 | 0 | 1 | 270 | 1 | 270 | 0.0 | 552 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982190 | sp|Q9C7C1|TET6_ARATH | 66.165 | 266 | 87 | 2 | 1 | 265 | 1 | 264 | 9.39e-127 | 364 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982190 | G7I9J9 | 98.519 | 270 | 4 | 0 | 1 | 270 | 1 | 270 | 0.0 | 552 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037080 | Msa0982190 | 0.919611 | 3.624980e-87 | -8.615850e-47 |
| Msa0084300 | Msa0982190 | 0.908253 | 2.093093e-81 | -8.615850e-47 |
| Msa0637930 | Msa0982190 | -0.804949 | 1.689678e-49 | -8.615850e-47 |
| Msa0646020 | Msa0982190 | 0.800792 | 1.220539e-48 | -8.615850e-47 |
| Msa0646420 | Msa0982190 | 0.803403 | 3.545452e-49 | -8.615850e-47 |
| Msa0662220 | Msa0982190 | 0.801770 | 7.698554e-49 | -8.615850e-47 |
| Msa0694140 | Msa0982190 | 0.809794 | 1.586457e-50 | -8.615850e-47 |
| Msa0711650 | Msa0982190 | 0.803197 | 3.910648e-49 | -8.615850e-47 |
| Msa0776560 | Msa0982190 | 0.800043 | 1.733918e-48 | -8.615850e-47 |
| Msa0131270 | Msa0982190 | 0.948183 | 1.562078e-106 | -8.615850e-47 |
| Msa0187590 | Msa0982190 | -0.805937 | 1.048879e-49 | -8.615850e-47 |
| Msa0237300 | Msa0982190 | 0.821541 | 3.823110e-53 | -8.615850e-47 |
| Msa0439960 | Msa0982190 | 0.811047 | 8.511762e-51 | -8.615850e-47 |
| Msa0982190 | Msa1129300 | -0.809539 | 1.799660e-50 | -8.615850e-47 |
| Msa0982190 | Msa1184230 | 0.822561 | 2.217758e-53 | -8.615850e-47 |
| Msa0982190 | Msa1190100 | -0.823481 | 1.353616e-53 | -8.615850e-47 |
| Msa0982190 | Msa1258030 | -0.830487 | 2.857306e-55 | -8.615850e-47 |
| Msa0982190 | Msa1364350 | -0.804772 | 1.839520e-49 | -8.615850e-47 |
| Msa0274720 | Msa0982190 | 0.836872 | 7.253580e-57 | -8.615850e-47 |
| Msa0315520 | Msa0982190 | 0.833754 | 4.447608e-56 | -8.615850e-47 |
| Msa0549950 | Msa0982190 | 0.802479 | 5.502220e-49 | -8.615850e-47 |
| Msa0969380 | Msa0982190 | 0.811705 | 6.125177e-51 | -8.615850e-47 |
| Msa0969720 | Msa0982190 | 0.812802 | 3.528953e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982190 | MtrunA17_Chr1g0199961 | 98.519 | 270 | 4 | 0 | 1 | 270 | 1 | 270 | 0.0 | 552 |
| Msa0982190 | MtrunA17_Chr6g0462061 | 74.815 | 270 | 68 | 0 | 1 | 270 | 1 | 270 | 5.61e-155 | 433 |
| Msa0982190 | MtrunA17_Chr4g0030021 | 43.728 | 279 | 141 | 3 | 3 | 265 | 2 | 280 | 3.85e-76 | 233 |
| Msa0982190 | MtrunA17_Chr4g0073251 | 44.615 | 260 | 129 | 4 | 3 | 248 | 2 | 260 | 6.40e-73 | 224 |
| Msa0982190 | MtrunA17_Chr8g0366571 | 43.182 | 264 | 140 | 3 | 4 | 257 | 3 | 266 | 5.12e-69 | 214 |
| Msa0982190 | MtrunA17_Chr8g0386471 | 34.661 | 251 | 154 | 2 | 12 | 252 | 13 | 263 | 1.53e-58 | 187 |
| Msa0982190 | MtrunA17_Chr8g0389221 | 38.258 | 264 | 151 | 4 | 5 | 256 | 4 | 267 | 2.34e-58 | 187 |
| Msa0982190 | MtrunA17_Chr5g0411131 | 41.065 | 263 | 145 | 3 | 5 | 257 | 4 | 266 | 4.06e-54 | 176 |
| Msa0982190 | MtrunA17_Chr4g0062101 | 34.749 | 259 | 156 | 3 | 2 | 247 | 4 | 262 | 6.73e-53 | 173 |
| Msa0982190 | MtrunA17_Chr5g0447681 | 26.877 | 253 | 154 | 4 | 3 | 243 | 48 | 281 | 4.58e-25 | 101 |
| Msa0982190 | MtrunA17_Chr2g0307651 | 36.301 | 146 | 93 | 0 | 1 | 146 | 1 | 146 | 9.82e-24 | 94.7 |
| Msa0982190 | MtrunA17_Chr2g0307641 | 48.052 | 77 | 38 | 1 | 185 | 259 | 17 | 93 | 3.37e-19 | 80.1 |
| Msa0982190 | MtrunA17_Chr5g0447671 | 33.333 | 117 | 65 | 3 | 120 | 232 | 49 | 156 | 6.13e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982190 | AT3G12090.1 | 66.165 | 266 | 87 | 2 | 1 | 265 | 1 | 264 | 9.55e-128 | 364 |
| Msa0982190 | AT4G23410.1 | 57.353 | 272 | 114 | 2 | 1 | 271 | 1 | 271 | 6.68e-114 | 329 |
| Msa0982190 | AT3G45600.1 | 44.444 | 279 | 139 | 3 | 3 | 265 | 2 | 280 | 1.61e-84 | 254 |
| Msa0982190 | AT4G28050.1 | 41.154 | 260 | 141 | 3 | 1 | 248 | 1 | 260 | 8.93e-78 | 236 |
| Msa0982190 | AT4G30430.1 | 37.778 | 270 | 156 | 3 | 1 | 258 | 1 | 270 | 1.45e-75 | 231 |
| Msa0982190 | AT2G23810.1 | 39.394 | 264 | 147 | 4 | 1 | 251 | 1 | 264 | 1.60e-75 | 231 |
| Msa0982190 | AT5G60220.1 | 42.599 | 277 | 143 | 4 | 3 | 263 | 2 | 278 | 1.62e-64 | 205 |
| Msa0982190 | AT1G18520.1 | 40.075 | 267 | 142 | 4 | 1 | 250 | 1 | 266 | 1.73e-63 | 200 |
| Msa0982190 | AT5G46700.1 | 41.667 | 264 | 144 | 3 | 4 | 257 | 3 | 266 | 3.87e-61 | 194 |
| Msa0982190 | AT2G19580.1 | 40.377 | 265 | 147 | 4 | 4 | 257 | 3 | 267 | 1.68e-58 | 187 |
| Msa0982190 | AT1G63260.2 | 35.714 | 252 | 146 | 4 | 5 | 246 | 6 | 251 | 6.53e-57 | 183 |
| Msa0982190 | AT1G63260.6 | 34.583 | 240 | 147 | 3 | 5 | 234 | 6 | 245 | 6.47e-53 | 174 |
| Msa0982190 | AT1G63260.1 | 34.583 | 240 | 147 | 3 | 5 | 234 | 6 | 245 | 6.47e-53 | 174 |
| Msa0982190 | AT1G63260.3 | 34.583 | 240 | 147 | 3 | 5 | 234 | 6 | 245 | 1.12e-52 | 173 |
| Msa0982190 | AT1G63260.5 | 35.681 | 213 | 127 | 3 | 5 | 207 | 6 | 218 | 1.12e-46 | 155 |
| Msa0982190 | AT3G45600.2 | 49.660 | 147 | 72 | 1 | 3 | 147 | 2 | 148 | 3.40e-45 | 151 |
| Msa0982190 | AT1G63260.4 | 36.782 | 174 | 108 | 2 | 5 | 176 | 6 | 179 | 7.76e-38 | 132 |
| Msa0982190 | AT2G03840.1 | 27.848 | 237 | 155 | 4 | 12 | 232 | 23 | 259 | 1.12e-32 | 121 |
| Msa0982190 | AT5G23030.1 | 30.350 | 257 | 168 | 4 | 1 | 247 | 1 | 256 | 3.06e-30 | 114 |
| Msa0982190 | AT5G57810.1 | 26.070 | 257 | 141 | 9 | 10 | 233 | 60 | 300 | 3.36e-19 | 85.9 |
Find 55 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTGGGTTTGACTATATT+TGG | 0.153305 | 6_4:-21812877 | Msa0982190:CDS |
| GAATACAAAATCCACGTTAT+TGG | 0.203585 | 6_4:-21812759 | Msa0982190:CDS |
| CATAGTCCTGCTCCAATTAT+TGG | 0.212597 | 6_4:+21813066 | None:intergenic |
| CAAACACCACTTCTTGTAAT+AGG | 0.226966 | 6_4:-21813006 | Msa0982190:CDS |
| TTAGCATCCATACCAATAAT+TGG | 0.238729 | 6_4:-21813078 | Msa0982190:CDS |
| ATTATAATTTGTACCTGTAT+TGG | 0.306319 | 6_4:+21812646 | None:intergenic |
| GGTTTGACTATATTTGGTTT+TGG | 0.337933 | 6_4:-21812871 | Msa0982190:CDS |
| GTTACTAATAGTAGCACTAT+TGG | 0.340814 | 6_4:-21812893 | Msa0982190:CDS |
| CAATAATTGGAGCAGGACTA+TGG | 0.354102 | 6_4:-21813065 | Msa0982190:CDS |
| CTCATAGGGATTTATTCAAT+TGG | 0.355629 | 6_4:-21812272 | Msa0982190:CDS |
| TTACTAATAGTAGCACTATT+GGG | 0.365406 | 6_4:-21812892 | Msa0982190:CDS |
| AACTGCATGCAATTACAATA+TGG | 0.369952 | 6_4:-21812453 | Msa0982190:CDS |
| ACTTTCCTCTTGGACCCCTT+TGG | 0.378547 | 6_4:-21812692 | Msa0982190:CDS |
| CTTGTGACAAACTTTCCTCT+TGG | 0.384482 | 6_4:-21812702 | Msa0982190:CDS |
| CTATTACAAGAAGTGGTGTT+TGG | 0.407257 | 6_4:+21813007 | None:intergenic |
| AGGTTCAGTAACACAGTGAT+AGG | 0.407586 | 6_4:-21813123 | Msa0982190:CDS |
| TAAGAGTGAGAGAAATGTAT+AGG | 0.412153 | 6_4:-21813143 | Msa0982190:exon |
| TTACCAATGGTAATCCCATC+TGG | 0.428713 | 6_4:+21812172 | None:intergenic |
| TTCATGTTGCATGTGCACTA+TGG | 0.430443 | 6_4:-21812936 | Msa0982190:CDS |
| TTGAAGACATAAGAAGGAAT+TGG | 0.432488 | 6_4:-21812334 | Msa0982190:CDS |
| GCTGAAACAGATTATCCATA+TGG | 0.446295 | 6_4:-21812221 | Msa0982190:CDS |
| ATATCATTAGCTGGTTTCAT+TGG | 0.450232 | 6_4:-21812967 | Msa0982190:CDS |
| GAATGATATGTCTCCAATAC+AGG | 0.472664 | 6_4:-21812659 | Msa0982190:intron |
| TCCTGCTCCAATTATTGGTA+TGG | 0.474090 | 6_4:+21813071 | None:intergenic |
| CACTCATAACATAGCAATGT+TGG | 0.475989 | 6_4:+21812380 | None:intergenic |
| CATTCTGCATATAATCCAAA+GGG | 0.480639 | 6_4:+21812677 | None:intergenic |
| TGGGTCTAACTTTGGTCATA+CGG | 0.487577 | 6_4:+21812192 | None:intergenic |
| AAGACTCAGATTGCTACAAA+TGG | 0.488256 | 6_4:-21812412 | Msa0982190:CDS |
| GTACTTGTGATATCATTAGC+TGG | 0.488688 | 6_4:-21812976 | Msa0982190:CDS |
| ATCCCATCTGGGTCTAACTT+TGG | 0.490692 | 6_4:+21812184 | None:intergenic |
| ATAAAACCTATTACAAGAAG+TGG | 0.520418 | 6_4:+21813000 | None:intergenic |
| GACCCAGATGGGATTACCAT+TGG | 0.527130 | 6_4:-21812175 | Msa0982190:CDS |
| TTGTAATTGCATGCAGTTGG+TGG | 0.535222 | 6_4:+21812458 | None:intergenic |
| TCCATACCAATAATTGGAGC+AGG | 0.539612 | 6_4:-21813072 | Msa0982190:CDS |
| ATGTGCACTATGGTTGTACT+TGG | 0.544797 | 6_4:-21812926 | Msa0982190:CDS |
| ATCTTACAGATTATTCACCT+TGG | 0.548050 | 6_4:-21812792 | Msa0982190:CDS |
| ATATTGTAATTGCATGCAGT+TGG | 0.563181 | 6_4:+21812455 | None:intergenic |
| GGTTCAGTAACACAGTGATA+GGG | 0.566697 | 6_4:-21813122 | Msa0982190:CDS |
| GACCAAAGTTAGACCCAGAT+GGG | 0.574022 | 6_4:-21812186 | Msa0982190:CDS |
| GAGTGTGATTCATGCAAAGC+TGG | 0.574954 | 6_4:-21812362 | Msa0982190:CDS |
| CCCTATGAGCAAAATAAGCA+TGG | 0.576576 | 6_4:+21812286 | None:intergenic |
| TACCAATGGTAATCCCATCT+GGG | 0.577451 | 6_4:+21812173 | None:intergenic |
| GGTGTGACTAGTAAAGGTGG+TGG | 0.578149 | 6_4:-21812850 | Msa0982190:CDS |
| GAGCAGGACTATGGATGGCA+AGG | 0.579423 | 6_4:-21813056 | Msa0982190:CDS |
| TCATTCTGCATATAATCCAA+AGG | 0.583877 | 6_4:+21812676 | None:intergenic |
| TGACCAAAGTTAGACCCAGA+TGG | 0.584683 | 6_4:-21812187 | Msa0982190:CDS |
| GTGTGCTTGAAGACATAAGA+AGG | 0.590298 | 6_4:-21812340 | Msa0982190:CDS |
| AATTGGAGCAGGACTATGGA+TGG | 0.601063 | 6_4:-21813061 | Msa0982190:CDS |
| TTTGGTGTGACTAGTAAAGG+TGG | 0.610196 | 6_4:-21812853 | Msa0982190:CDS |
| ATATATATTGGACTTACCAA+TGG | 0.614933 | 6_4:+21812159 | None:intergenic |
| GGTGGTGGTGTAGAAGTGCC+TGG | 0.625849 | 6_4:-21812835 | Msa0982190:CDS |
| TTTACAGTATTCCAATAACG+TGG | 0.653222 | 6_4:+21812748 | None:intergenic |
| ATAATCCAAAGGGGTCCAAG+AGG | 0.661558 | 6_4:+21812687 | None:intergenic |
| TACTCACTATAAGATCTACC+AGG | 0.665561 | 6_4:+21812817 | None:intergenic |
| ATTCTGCATATAATCCAAAG+GGG | 0.741377 | 6_4:+21812678 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTCAAAAAATGTTATTT+TGG | + | chr6_4:21812765-21812784 | None:intergenic | 15.0% |
| !!! | ACATTCAAAAAATGTTATTT+TGG | + | chr6_4:21812796-21812815 | None:intergenic | 15.0% |
| !!! | TAGTTCAAAAAATGTTATTT+TGG | + | chr6_4:21812765-21812784 | None:intergenic | 15.0% |
| !!! | ACATTCAAAAAATGTTATTT+TGG | + | chr6_4:21812796-21812815 | None:intergenic | 15.0% |
| !!! | ACTGTAAAGAATTGTATTTT+AGG | - | chr6_4:21812590-21812609 | Msa0982190:intron | 20.0% |
| !!! | CTGTAAAGAATTGTATTTTA+GGG | - | chr6_4:21812591-21812610 | Msa0982190:intron | 20.0% |
| !!! | ATTATAATTTGTACCTGTAT+TGG | + | chr6_4:21812680-21812699 | None:intergenic | 20.0% |
| !! | AATTGATTAATGCTAAGTTA+TGG | - | chr6_4:21812818-21812837 | Msa0982190:CDS | 20.0% |
| !!! | ACTGTAAAGAATTGTATTTT+AGG | - | chr6_4:21812590-21812609 | Msa0982190:intron | 20.0% |
| !!! | CTGTAAAGAATTGTATTTTA+GGG | - | chr6_4:21812591-21812610 | Msa0982190:intron | 20.0% |
| !!! | ATTATAATTTGTACCTGTAT+TGG | + | chr6_4:21812680-21812699 | None:intergenic | 20.0% |
| !! | AATTGATTAATGCTAAGTTA+TGG | - | chr6_4:21812818-21812837 | Msa0982190:CDS | 20.0% |
| ! | ATAAAACCTATTACAAGAAG+TGG | + | chr6_4:21812326-21812345 | None:intergenic | 25.0% |
| ! | TTACTAATAGTAGCACTATT+GGG | - | chr6_4:21812431-21812450 | Msa0982190:CDS | 25.0% |
| ! | ATATATATTGGACTTACCAA+TGG | + | chr6_4:21813167-21813186 | None:intergenic | 25.0% |
| ! | ATAAAACCTATTACAAGAAG+TGG | + | chr6_4:21812326-21812345 | None:intergenic | 25.0% |
| ! | TTACTAATAGTAGCACTATT+GGG | - | chr6_4:21812431-21812450 | Msa0982190:CDS | 25.0% |
| ! | ATATATATTGGACTTACCAA+TGG | + | chr6_4:21813167-21813186 | None:intergenic | 25.0% |
| TAAGAGTGAGAGAAATGTAT+AGG | - | chr6_4:21812180-21812199 | Msa0982190:CDS | 30.0% | |
| TTAGCATCCATACCAATAAT+TGG | - | chr6_4:21812245-21812264 | Msa0982190:CDS | 30.0% | |
| ! | ATATCATTAGCTGGTTTCAT+TGG | - | chr6_4:21812356-21812375 | Msa0982190:CDS | 30.0% |
| GTTACTAATAGTAGCACTAT+TGG | - | chr6_4:21812430-21812449 | Msa0982190:CDS | 30.0% | |
| CTATTGGGTTTGACTATATT+TGG | - | chr6_4:21812446-21812465 | Msa0982190:CDS | 30.0% | |
| !! | GGTTTGACTATATTTGGTTT+TGG | - | chr6_4:21812452-21812471 | Msa0982190:CDS | 30.0% |
| ATCTTACAGATTATTCACCT+TGG | - | chr6_4:21812531-21812550 | Msa0982190:intron | 30.0% | |
| ! | TGTATTCTTTTCTTCAACCA+AGG | + | chr6_4:21812551-21812570 | None:intergenic | 30.0% |
| GAATACAAAATCCACGTTAT+TGG | - | chr6_4:21812564-21812583 | Msa0982190:intron | 30.0% | |
| TTTACAGTATTCCAATAACG+TGG | + | chr6_4:21812578-21812597 | None:intergenic | 30.0% | |
| ATTCTGCATATAATCCAAAG+GGG | + | chr6_4:21812648-21812667 | None:intergenic | 30.0% | |
| CATTCTGCATATAATCCAAA+GGG | + | chr6_4:21812649-21812668 | None:intergenic | 30.0% | |
| TCATTCTGCATATAATCCAA+AGG | + | chr6_4:21812650-21812669 | None:intergenic | 30.0% | |
| AAGTTATGGTTAATGTAGTC+AGG | - | chr6_4:21812832-21812851 | Msa0982190:CDS | 30.0% | |
| ATATTGTAATTGCATGCAGT+TGG | + | chr6_4:21812871-21812890 | None:intergenic | 30.0% | |
| AACTGCATGCAATTACAATA+TGG | - | chr6_4:21812870-21812889 | Msa0982190:CDS | 30.0% | |
| TTGAAGACATAAGAAGGAAT+TGG | - | chr6_4:21812989-21813008 | Msa0982190:CDS | 30.0% | |
| CTCATAGGGATTTATTCAAT+TGG | - | chr6_4:21813051-21813070 | Msa0982190:CDS | 30.0% | |
| GGTAAGTCCAATATATATGA+TGG | - | chr6_4:21813169-21813188 | Msa0982190:five_prime_UTR | 30.0% | |
| TAAGAGTGAGAGAAATGTAT+AGG | - | chr6_4:21812180-21812199 | Msa0982190:CDS | 30.0% | |
| TTAGCATCCATACCAATAAT+TGG | - | chr6_4:21812245-21812264 | Msa0982190:CDS | 30.0% | |
| ! | ATATCATTAGCTGGTTTCAT+TGG | - | chr6_4:21812356-21812375 | Msa0982190:CDS | 30.0% |
| GTTACTAATAGTAGCACTAT+TGG | - | chr6_4:21812430-21812449 | Msa0982190:CDS | 30.0% | |
| CTATTGGGTTTGACTATATT+TGG | - | chr6_4:21812446-21812465 | Msa0982190:CDS | 30.0% | |
| !! | GGTTTGACTATATTTGGTTT+TGG | - | chr6_4:21812452-21812471 | Msa0982190:CDS | 30.0% |
| ATCTTACAGATTATTCACCT+TGG | - | chr6_4:21812531-21812550 | Msa0982190:intron | 30.0% | |
| ! | TGTATTCTTTTCTTCAACCA+AGG | + | chr6_4:21812551-21812570 | None:intergenic | 30.0% |
| GAATACAAAATCCACGTTAT+TGG | - | chr6_4:21812564-21812583 | Msa0982190:intron | 30.0% | |
| TTTACAGTATTCCAATAACG+TGG | + | chr6_4:21812578-21812597 | None:intergenic | 30.0% | |
| ATTCTGCATATAATCCAAAG+GGG | + | chr6_4:21812648-21812667 | None:intergenic | 30.0% | |
| CATTCTGCATATAATCCAAA+GGG | + | chr6_4:21812649-21812668 | None:intergenic | 30.0% | |
| TCATTCTGCATATAATCCAA+AGG | + | chr6_4:21812650-21812669 | None:intergenic | 30.0% | |
| AAGTTATGGTTAATGTAGTC+AGG | - | chr6_4:21812832-21812851 | Msa0982190:CDS | 30.0% | |
| ATATTGTAATTGCATGCAGT+TGG | + | chr6_4:21812871-21812890 | None:intergenic | 30.0% | |
| AACTGCATGCAATTACAATA+TGG | - | chr6_4:21812870-21812889 | Msa0982190:CDS | 30.0% | |
| TTGAAGACATAAGAAGGAAT+TGG | - | chr6_4:21812989-21813008 | Msa0982190:CDS | 30.0% | |
| CTCATAGGGATTTATTCAAT+TGG | - | chr6_4:21813051-21813070 | Msa0982190:CDS | 30.0% | |
| CTATTACAAGAAGTGGTGTT+TGG | + | chr6_4:21812319-21812338 | None:intergenic | 35.0% | |
| CAAACACCACTTCTTGTAAT+AGG | - | chr6_4:21812317-21812336 | Msa0982190:CDS | 35.0% | |
| GTACTTGTGATATCATTAGC+TGG | - | chr6_4:21812347-21812366 | Msa0982190:CDS | 35.0% | |
| TACTCACTATAAGATCTACC+AGG | + | chr6_4:21812509-21812528 | None:intergenic | 35.0% | |
| GAATGATATGTCTCCAATAC+AGG | - | chr6_4:21812664-21812683 | Msa0982190:CDS | 35.0% | |
| AAGACTCAGATTGCTACAAA+TGG | - | chr6_4:21812911-21812930 | Msa0982190:CDS | 35.0% | |
| CACTCATAACATAGCAATGT+TGG | + | chr6_4:21812946-21812965 | None:intergenic | 35.0% | |
| !!! | ACCATGCTTATTTTGCTCAT+AGG | - | chr6_4:21813036-21813055 | Msa0982190:CDS | 35.0% |
| !!! | CCATGCTTATTTTGCTCATA+GGG | - | chr6_4:21813037-21813056 | Msa0982190:CDS | 35.0% |
| GCTGAAACAGATTATCCATA+TGG | - | chr6_4:21813102-21813121 | Msa0982190:CDS | 35.0% | |
| CTATTACAAGAAGTGGTGTT+TGG | + | chr6_4:21812319-21812338 | None:intergenic | 35.0% | |
| CAAACACCACTTCTTGTAAT+AGG | - | chr6_4:21812317-21812336 | Msa0982190:CDS | 35.0% | |
| GTACTTGTGATATCATTAGC+TGG | - | chr6_4:21812347-21812366 | Msa0982190:CDS | 35.0% | |
| TACTCACTATAAGATCTACC+AGG | + | chr6_4:21812509-21812528 | None:intergenic | 35.0% | |
| GAATGATATGTCTCCAATAC+AGG | - | chr6_4:21812664-21812683 | Msa0982190:CDS | 35.0% | |
| AAGACTCAGATTGCTACAAA+TGG | - | chr6_4:21812911-21812930 | Msa0982190:CDS | 35.0% | |
| CACTCATAACATAGCAATGT+TGG | + | chr6_4:21812946-21812965 | None:intergenic | 35.0% | |
| !!! | ACCATGCTTATTTTGCTCAT+AGG | - | chr6_4:21813036-21813055 | Msa0982190:CDS | 35.0% |
| !!! | CCATGCTTATTTTGCTCATA+GGG | - | chr6_4:21813037-21813056 | Msa0982190:CDS | 35.0% |
| GCTGAAACAGATTATCCATA+TGG | - | chr6_4:21813102-21813121 | Msa0982190:CDS | 35.0% | |
| AGGTTCAGTAACACAGTGAT+AGG | - | chr6_4:21812200-21812219 | Msa0982190:CDS | 40.0% | |
| GGTTCAGTAACACAGTGATA+GGG | - | chr6_4:21812201-21812220 | Msa0982190:CDS | 40.0% | |
| TCCATACCAATAATTGGAGC+AGG | - | chr6_4:21812251-21812270 | Msa0982190:CDS | 40.0% | |
| TCCTGCTCCAATTATTGGTA+TGG | + | chr6_4:21812255-21812274 | None:intergenic | 40.0% | |
| CATAGTCCTGCTCCAATTAT+TGG | + | chr6_4:21812260-21812279 | None:intergenic | 40.0% | |
| CAATAATTGGAGCAGGACTA+TGG | - | chr6_4:21812258-21812277 | Msa0982190:CDS | 40.0% | |
| TTCATGTTGCATGTGCACTA+TGG | - | chr6_4:21812387-21812406 | Msa0982190:CDS | 40.0% | |
| ATGTGCACTATGGTTGTACT+TGG | - | chr6_4:21812397-21812416 | Msa0982190:CDS | 40.0% | |
| !! | GGTTTTGGTGTGACTAGTAA+AGG | - | chr6_4:21812467-21812486 | Msa0982190:CDS | 40.0% |
| ! | TTTGGTGTGACTAGTAAAGG+TGG | - | chr6_4:21812470-21812489 | Msa0982190:CDS | 40.0% |
| CTTGTGACAAACTTTCCTCT+TGG | - | chr6_4:21812621-21812640 | Msa0982190:intron | 40.0% | |
| TTGTAATTGCATGCAGTTGG+TGG | + | chr6_4:21812868-21812887 | None:intergenic | 40.0% | |
| GTGTGCTTGAAGACATAAGA+AGG | - | chr6_4:21812983-21813002 | Msa0982190:CDS | 40.0% | |
| CCCTATGAGCAAAATAAGCA+TGG | + | chr6_4:21813040-21813059 | None:intergenic | 40.0% | |
| ! | GTCATACGGTTTTCACCATA+TGG | + | chr6_4:21813120-21813139 | None:intergenic | 40.0% |
| TGGGTCTAACTTTGGTCATA+CGG | + | chr6_4:21813134-21813153 | None:intergenic | 40.0% | |
| TACCAATGGTAATCCCATCT+GGG | + | chr6_4:21813153-21813172 | None:intergenic | 40.0% | |
| TTACCAATGGTAATCCCATC+TGG | + | chr6_4:21813154-21813173 | None:intergenic | 40.0% | |
| AGGTTCAGTAACACAGTGAT+AGG | - | chr6_4:21812200-21812219 | Msa0982190:CDS | 40.0% | |
| GGTTCAGTAACACAGTGATA+GGG | - | chr6_4:21812201-21812220 | Msa0982190:CDS | 40.0% | |
| TCCATACCAATAATTGGAGC+AGG | - | chr6_4:21812251-21812270 | Msa0982190:CDS | 40.0% | |
| TCCTGCTCCAATTATTGGTA+TGG | + | chr6_4:21812255-21812274 | None:intergenic | 40.0% | |
| CATAGTCCTGCTCCAATTAT+TGG | + | chr6_4:21812260-21812279 | None:intergenic | 40.0% | |
| CAATAATTGGAGCAGGACTA+TGG | - | chr6_4:21812258-21812277 | Msa0982190:CDS | 40.0% | |
| TTCATGTTGCATGTGCACTA+TGG | - | chr6_4:21812387-21812406 | Msa0982190:CDS | 40.0% | |
| ATGTGCACTATGGTTGTACT+TGG | - | chr6_4:21812397-21812416 | Msa0982190:CDS | 40.0% | |
| !! | GGTTTTGGTGTGACTAGTAA+AGG | - | chr6_4:21812467-21812486 | Msa0982190:CDS | 40.0% |
| ! | TTTGGTGTGACTAGTAAAGG+TGG | - | chr6_4:21812470-21812489 | Msa0982190:CDS | 40.0% |
| CTTGTGACAAACTTTCCTCT+TGG | - | chr6_4:21812621-21812640 | Msa0982190:intron | 40.0% | |
| TTGTAATTGCATGCAGTTGG+TGG | + | chr6_4:21812868-21812887 | None:intergenic | 40.0% | |
| GTGTGCTTGAAGACATAAGA+AGG | - | chr6_4:21812983-21813002 | Msa0982190:CDS | 40.0% | |
| CCCTATGAGCAAAATAAGCA+TGG | + | chr6_4:21813040-21813059 | None:intergenic | 40.0% | |
| ! | GTCATACGGTTTTCACCATA+TGG | + | chr6_4:21813120-21813139 | None:intergenic | 40.0% |
| TGGGTCTAACTTTGGTCATA+CGG | + | chr6_4:21813134-21813153 | None:intergenic | 40.0% | |
| TACCAATGGTAATCCCATCT+GGG | + | chr6_4:21813153-21813172 | None:intergenic | 40.0% | |
| TTACCAATGGTAATCCCATC+TGG | + | chr6_4:21813154-21813173 | None:intergenic | 40.0% | |
| AATTGGAGCAGGACTATGGA+TGG | - | chr6_4:21812262-21812281 | Msa0982190:CDS | 45.0% | |
| ATAATCCAAAGGGGTCCAAG+AGG | + | chr6_4:21812639-21812658 | None:intergenic | 45.0% | |
| GAGTGTGATTCATGCAAAGC+TGG | - | chr6_4:21812961-21812980 | Msa0982190:CDS | 45.0% | |
| TGACCAAAGTTAGACCCAGA+TGG | - | chr6_4:21813136-21813155 | Msa0982190:exon | 45.0% | |
| GACCAAAGTTAGACCCAGAT+GGG | - | chr6_4:21813137-21813156 | Msa0982190:exon | 45.0% | |
| ATCCCATCTGGGTCTAACTT+TGG | + | chr6_4:21813142-21813161 | None:intergenic | 45.0% | |
| AATTGGAGCAGGACTATGGA+TGG | - | chr6_4:21812262-21812281 | Msa0982190:CDS | 45.0% | |
| ATAATCCAAAGGGGTCCAAG+AGG | + | chr6_4:21812639-21812658 | None:intergenic | 45.0% | |
| GAGTGTGATTCATGCAAAGC+TGG | - | chr6_4:21812961-21812980 | Msa0982190:CDS | 45.0% | |
| TGACCAAAGTTAGACCCAGA+TGG | - | chr6_4:21813136-21813155 | Msa0982190:exon | 45.0% | |
| GACCAAAGTTAGACCCAGAT+GGG | - | chr6_4:21813137-21813156 | Msa0982190:exon | 45.0% | |
| ATCCCATCTGGGTCTAACTT+TGG | + | chr6_4:21813142-21813161 | None:intergenic | 45.0% | |
| GGTGTGACTAGTAAAGGTGG+TGG | - | chr6_4:21812473-21812492 | Msa0982190:CDS | 50.0% | |
| ACTTTCCTCTTGGACCCCTT+TGG | - | chr6_4:21812631-21812650 | Msa0982190:intron | 50.0% | |
| GACCCAGATGGGATTACCAT+TGG | - | chr6_4:21813148-21813167 | Msa0982190:exon | 50.0% | |
| GGTGTGACTAGTAAAGGTGG+TGG | - | chr6_4:21812473-21812492 | Msa0982190:CDS | 50.0% | |
| ACTTTCCTCTTGGACCCCTT+TGG | - | chr6_4:21812631-21812650 | Msa0982190:intron | 50.0% | |
| GACCCAGATGGGATTACCAT+TGG | - | chr6_4:21813148-21813167 | Msa0982190:exon | 50.0% | |
| GAGCAGGACTATGGATGGCA+AGG | - | chr6_4:21812267-21812286 | Msa0982190:CDS | 55.0% | |
| GAGCAGGACTATGGATGGCA+AGG | - | chr6_4:21812267-21812286 | Msa0982190:CDS | 55.0% | |
| !! | GGTGGTGGTGTAGAAGTGCC+TGG | - | chr6_4:21812488-21812507 | Msa0982190:intron | 60.0% |
| !! | GGTGGTGGTGTAGAAGTGCC+TGG | - | chr6_4:21812488-21812507 | Msa0982190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 21812155 | 21813190 | 21812155 | ID=Msa0982190;Name=Msa0982190 |
| chr6_4 | mRNA | 21812155 | 21813190 | 21812155 | ID=Msa0982190-mRNA-1;Parent=Msa0982190;Name=Msa0982190-mRNA-1;_AED=0.02;_eAED=0.02;_QI=39|1|1|1|1|1|2|17|271 |
| chr6_4 | exon | 21812155 | 21812495 | 21812155 | ID=Msa0982190-mRNA-1:exon:6810;Parent=Msa0982190-mRNA-1 |
| chr6_4 | exon | 21812660 | 21813190 | 21812660 | ID=Msa0982190-mRNA-1:exon:6809;Parent=Msa0982190-mRNA-1 |
| chr6_4 | five_prime_UTR | 21813152 | 21813190 | 21813152 | ID=Msa0982190-mRNA-1:five_prime_utr;Parent=Msa0982190-mRNA-1 |
| chr6_4 | CDS | 21812660 | 21813151 | 21812660 | ID=Msa0982190-mRNA-1:cds;Parent=Msa0982190-mRNA-1 |
| chr6_4 | CDS | 21812172 | 21812495 | 21812172 | ID=Msa0982190-mRNA-1:cds;Parent=Msa0982190-mRNA-1 |
| chr6_4 | three_prime_UTR | 21812155 | 21812171 | 21812155 | ID=Msa0982190-mRNA-1:three_prime_utr;Parent=Msa0982190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
