Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713110 | XP_039690096.1 | 96.806 | 407 | 13 | 0 | 1 | 407 | 1 | 407 | 0.0 | 826 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713110 | sp|Q93XX5|Y5713_ARATH | 47.989 | 348 | 178 | 1 | 21 | 365 | 35 | 382 | 5.61e-128 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713110 | G7K6M0 | 96.806 | 407 | 13 | 0 | 1 | 407 | 1 | 407 | 0.0 | 826 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630970 | Msa0713110 | -0.802423 | 5.651261e-49 | -8.615850e-47 |
| Msa0713110 | Msa0756800 | 0.889107 | 3.255074e-73 | -8.615850e-47 |
| Msa0713110 | Msa0836340 | 0.825941 | 3.562584e-54 | -8.615850e-47 |
| Msa0713110 | Msa1198450 | -0.826172 | 3.138190e-54 | -8.615850e-47 |
| Msa0713110 | Msa1292730 | -0.815479 | 9.050146e-52 | -8.615850e-47 |
| Msa0713110 | Msa1421870 | -0.809131 | 2.201621e-50 | -8.615850e-47 |
| Msa0200840 | Msa0713110 | -0.835083 | 2.062027e-56 | -8.615850e-47 |
| Msa0200870 | Msa0713110 | -0.823997 | 1.024656e-53 | -8.615850e-47 |
| Msa0243470 | Msa0713110 | -0.828469 | 8.837645e-55 | -8.615850e-47 |
| Msa0281940 | Msa0713110 | -0.813539 | 2.432471e-51 | -8.615850e-47 |
| Msa0343030 | Msa0713110 | 0.960423 | 1.534991e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713110 | MtrunA17_Chr5g0402081 | 96.806 | 407 | 13 | 0 | 1 | 407 | 1 | 407 | 0.0 | 826 |
| Msa0713110 | MtrunA17_Chr4g0044651 | 63.243 | 370 | 126 | 5 | 1 | 360 | 1 | 370 | 0.0 | 509 |
| Msa0713110 | MtrunA17_Chr4g0053041 | 51.105 | 362 | 166 | 3 | 8 | 358 | 22 | 383 | 1.94e-135 | 394 |
| Msa0713110 | MtrunA17_Chr5g0401931 | 47.558 | 389 | 188 | 3 | 21 | 393 | 27 | 415 | 3.77e-132 | 385 |
| Msa0713110 | MtrunA17_Chr7g0219811 | 47.945 | 365 | 178 | 4 | 1 | 354 | 1 | 364 | 1.30e-128 | 375 |
| Msa0713110 | MtrunA17_Chr4g0044681 | 50.789 | 317 | 145 | 3 | 20 | 332 | 23 | 332 | 8.33e-120 | 351 |
| Msa0713110 | MtrunA17_Chr5g0419671 | 45.643 | 241 | 111 | 2 | 124 | 364 | 13 | 233 | 9.19e-75 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713110 | AT4G36945.1 | 57.178 | 404 | 166 | 4 | 6 | 406 | 9 | 408 | 1.19e-173 | 491 |
| Msa0713110 | AT1G49740.1 | 61.765 | 340 | 127 | 1 | 13 | 349 | 20 | 359 | 2.72e-160 | 455 |
| Msa0713110 | AT3G19310.1 | 54.040 | 396 | 168 | 4 | 17 | 407 | 24 | 410 | 5.30e-159 | 454 |
| Msa0713110 | AT5G67130.1 | 47.989 | 348 | 178 | 1 | 21 | 365 | 35 | 382 | 5.70e-129 | 378 |
| Msa0713110 | AT1G13680.1 | 45.536 | 336 | 169 | 4 | 11 | 342 | 21 | 346 | 1.43e-109 | 326 |
Find 126 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAGACATGCGTTCATTTC+TGG | 0.130652 | 5_1:-5011224 | Msa0713110:CDS |
| TATAAAGATGAAACGATTTA+TGG | 0.146226 | 5_1:-5009603 | Msa0713110:three_prime_UTR |
| TTTCATCACTCGGCACTTTA+TGG | 0.185673 | 5_1:-5009900 | Msa0713110:three_prime_UTR |
| GCAGGTGGAGGTGGAGAAAT+TGG | 0.207822 | 5_1:+5010178 | None:intergenic |
| TAATCAACAGCGATGAAATT+TGG | 0.242073 | 5_1:+5010543 | None:intergenic |
| AAAGATACAAACTTTGTTAA+TGG | 0.244124 | 5_1:+5013382 | None:intergenic |
| TTGTTTGCTTGACTATTATT+AGG | 0.258950 | 5_1:+5010121 | None:intergenic |
| TTTGGTTACCACAACTTTCT+TGG | 0.259872 | 5_1:-5010050 | Msa0713110:CDS |
| AGGCCAATCGCTACCGTTCT+TGG | 0.277242 | 5_1:+5011078 | None:intergenic |
| GGCTTGCTCCAGCTCAAATT+TGG | 0.281003 | 5_1:+5009762 | None:intergenic |
| TAAATCGTTTCATCTTTATA+AGG | 0.301830 | 5_1:+5009606 | None:intergenic |
| AAGATACAAACTTTGTTAAT+GGG | 0.302320 | 5_1:+5013383 | None:intergenic |
| CATCGCTGTTGATTATTATC+AGG | 0.302636 | 5_1:-5010535 | Msa0713110:intron |
| ACTAAGGTCTTCCAAGCTTC+AGG | 0.304715 | 5_1:-5011136 | Msa0713110:CDS |
| TCTTTCATAAGAAGCGATTA+AGG | 0.312691 | 5_1:+5014009 | None:intergenic |
| TCCAAGCTTCAGGGATTAAC+AGG | 0.322189 | 5_1:-5011126 | Msa0713110:CDS |
| CGATAAATCGTTGATTGTTC+AGG | 0.322795 | 5_1:+5011038 | None:intergenic |
| GACTATTATTAGGAGACTTC+TGG | 0.327242 | 5_1:+5010131 | None:intergenic |
| GACACATAATTCATTTGCTT+TGG | 0.348095 | 5_1:-5013243 | Msa0713110:CDS |
| TTCTTGGGCAACCGACCAAC+CGG | 0.355141 | 5_1:+5011094 | None:intergenic |
| AAGCTTGGAAGACCTTAGTT+AGG | 0.355874 | 5_1:+5011140 | None:intergenic |
| AATGCCTTCAGCTGCTTCCT+TGG | 0.356856 | 5_1:+5010997 | None:intergenic |
| TGACGATTAATACAAAGATT+TGG | 0.359042 | 5_1:+5013635 | None:intergenic |
| GGACGTGTATTTCCATTTGC+AGG | 0.360507 | 5_1:+5013434 | None:intergenic |
| AGATAGCAACAGAAAGGATA+TGG | 0.370036 | 5_1:+5013933 | None:intergenic |
| AGATAGTATCCTGCTACATC+TGG | 0.382095 | 5_1:+5013412 | None:intergenic |
| ATCGGTTGCCGGCAGCTTCA+TGG | 0.383161 | 5_1:+5010568 | None:intergenic |
| GGAGACTTCTGGTTTCCATT+TGG | 0.388451 | 5_1:+5010142 | None:intergenic |
| TGAAAGGTTTGCCGTTTAAT+CGG | 0.388517 | 5_1:-5013280 | Msa0713110:CDS |
| CACATATTCATCCAGCTTGA+AGG | 0.392390 | 5_1:-5013602 | Msa0713110:intron |
| CATAATTCATTTGCTTTGGC+TGG | 0.394141 | 5_1:-5013239 | Msa0713110:CDS |
| AACCATGAATACCGATTAAA+CGG | 0.395061 | 5_1:+5013269 | None:intergenic |
| GAAATTTGGCCATCGGTTGC+CGG | 0.398958 | 5_1:+5010557 | None:intergenic |
| TGCCGTTTAATCGGTATTCA+TGG | 0.399726 | 5_1:-5013271 | Msa0713110:CDS |
| TGATTCCTAGTGTTATTGTA+TGG | 0.400563 | 5_1:-5009937 | Msa0713110:three_prime_UTR |
| GTTGAATGATTCACAACTAT+TGG | 0.409661 | 5_1:-5009858 | Msa0713110:three_prime_UTR |
| GTTCAGGCAAATGCTACGTT+TGG | 0.417266 | 5_1:-5010217 | Msa0713110:intron |
| TTTGGTGCAGCTTCTGAAGC+AGG | 0.424534 | 5_1:+5010160 | None:intergenic |
| GGTGGCGATTCATTTCGATT+TGG | 0.434330 | 5_1:+5010705 | None:intergenic |
| GATTAACAGGTACATGTTCC+CGG | 0.438116 | 5_1:-5011113 | Msa0713110:CDS |
| TGGAGATGAAGGTATGCAAC+CGG | 0.442403 | 5_1:-5010736 | Msa0713110:CDS |
| TTCTACACCGAATCGTTCTC+AGG | 0.443945 | 5_1:-5010637 | Msa0713110:CDS |
| AATAATCACCATCTTTATTG+AGG | 0.452937 | 5_1:-5011185 | Msa0713110:CDS |
| GCTTCAGAAGCTGCACCAAA+TGG | 0.457578 | 5_1:-5010157 | Msa0713110:CDS |
| CTAAGGTCTTCCAAGCTTCA+GGG | 0.460500 | 5_1:-5011135 | Msa0713110:CDS |
| TGTCAAACATGTCCTGCAAA+TGG | 0.461549 | 5_1:-5013446 | Msa0713110:CDS |
| GGCCAATCGCTACCGTTCTT+GGG | 0.461898 | 5_1:+5011079 | None:intergenic |
| GCTTCTGAAGCAGGTGGAGG+TGG | 0.462827 | 5_1:+5010169 | None:intergenic |
| AATTATTATTACCTTCAAGC+TGG | 0.464784 | 5_1:+5013591 | None:intergenic |
| ACTCTCTTTATACAGCTGTC+AGG | 0.475142 | 5_1:-5009579 | Msa0713110:three_prime_UTR |
| AGGATCATGTCATCGACAAC+AGG | 0.476366 | 5_1:+5011058 | None:intergenic |
| AATGATAATGTGAAGGTGAA+AGG | 0.477711 | 5_1:-5013296 | Msa0713110:intron |
| CAAGCAAACAATGCATATAG+TGG | 0.479069 | 5_1:-5010109 | Msa0713110:CDS |
| CTCTCTTTATACAGCTGTCA+GGG | 0.493580 | 5_1:-5009578 | Msa0713110:three_prime_UTR |
| ATAGTGTCATCCTGGTTCAT+AGG | 0.494246 | 5_1:+5013182 | None:intergenic |
| ACCTGTTAATCCCTGAAGCT+TGG | 0.494888 | 5_1:+5011125 | None:intergenic |
| AACATAATCCTCAATAAAGA+TGG | 0.496490 | 5_1:+5011177 | None:intergenic |
| GTATGGTTGTGTCATTCTAC+TGG | 0.498143 | 5_1:-5011422 | Msa0713110:CDS |
| AAGATGGTGATTATTTCAGA+TGG | 0.501112 | 5_1:+5011193 | None:intergenic |
| GTGAACTACCAAATTTGAGC+TGG | 0.503350 | 5_1:-5009770 | Msa0713110:three_prime_UTR |
| GCAATTGGCTGTGTTAACTT+TGG | 0.505904 | 5_1:-5010068 | Msa0713110:CDS |
| AACTGAGATCTAGTGAAGAT+TGG | 0.507225 | 5_1:-5009711 | Msa0713110:three_prime_UTR |
| AAGACCTTAGTTAGGGCTGC+AGG | 0.507313 | 5_1:+5011148 | None:intergenic |
| ATGAGGTAGGCATCAATTGT+GGG | 0.507567 | 5_1:-5009684 | Msa0713110:three_prime_UTR |
| CAAGCTGTTGATGCAGCAAA+TGG | 0.512280 | 5_1:-5010393 | Msa0713110:CDS |
| AGCTCCTGCAGCCCTAACTA+AGG | 0.514774 | 5_1:-5011152 | Msa0713110:CDS |
| GATGAGGTAGGCATCAATTG+TGG | 0.517383 | 5_1:-5009685 | Msa0713110:three_prime_UTR |
| AGCTTGGAAGACCTTAGTTA+GGG | 0.519986 | 5_1:+5011141 | None:intergenic |
| CTGAAGGCATTCCTTTCACA+TGG | 0.523543 | 5_1:-5010985 | Msa0713110:CDS |
| ATGAAGCTGCCGGCAACCGA+TGG | 0.525241 | 5_1:-5010566 | Msa0713110:CDS |
| TGCCCAAGAACGGTAGCGAT+TGG | 0.526103 | 5_1:-5011081 | Msa0713110:CDS |
| CACCAATGAACACAAAATCT+AGG | 0.527509 | 5_1:-5010686 | Msa0713110:CDS |
| TTTATAAGGTATCTCATAAG+TGG | 0.529772 | 5_1:+5009620 | None:intergenic |
| AACAGCTATGATGATGCAAT+TGG | 0.530409 | 5_1:-5010083 | Msa0713110:CDS |
| GTCTTCATCATGCTAAGTAA+TGG | 0.532104 | 5_1:+5010594 | None:intergenic |
| TTACCACAACTTTCTTGGCA+TGG | 0.532874 | 5_1:-5010045 | Msa0713110:CDS |
| ACGACGTATTTCCATGTGAA+AGG | 0.536792 | 5_1:+5010974 | None:intergenic |
| TAAACACAAAAGTAGAATGA+AGG | 0.537079 | 5_1:-5013841 | Msa0713110:intron |
| AGATACAAACTTTGTTAATG+GGG | 0.540888 | 5_1:+5013384 | None:intergenic |
| TCTCTAAGCGCGTTTACTGC+AGG | 0.540953 | 5_1:+5011241 | None:intergenic |
| TTTCGATTTGGACAAGAACC+CGG | 0.547317 | 5_1:+5010717 | None:intergenic |
| CAGCGATGAAATTTGGCCAT+CGG | 0.549318 | 5_1:+5010550 | None:intergenic |
| GTTGGTCGGTTGCCCAAGAA+CGG | 0.555167 | 5_1:-5011091 | Msa0713110:CDS |
| CCACAGGCCTGAGAACGATT+CGG | 0.555778 | 5_1:+5010630 | None:intergenic |
| ATATGGATTTGTGAAGGAAG+AGG | 0.558800 | 5_1:+5013950 | None:intergenic |
| GCAGCTTCTGAAGCAGGTGG+AGG | 0.559293 | 5_1:+5010166 | None:intergenic |
| TTATAGAGGAGTGATGGTGG+AGG | 0.564560 | 5_1:-5010423 | Msa0713110:intron |
| GATCAGCAATAGTGTCATCC+TGG | 0.565278 | 5_1:+5013174 | None:intergenic |
| GATAGTATCCTGCTACATCT+GGG | 0.566644 | 5_1:+5013413 | None:intergenic |
| ATACACGTCCCAGATGTAGC+AGG | 0.568124 | 5_1:-5013421 | Msa0713110:CDS |
| AAGACTTGCCATGAAGCTGC+CGG | 0.572214 | 5_1:-5010576 | Msa0713110:CDS |
| AGTTCACTTAAGAAACTTGT+CGG | 0.573594 | 5_1:+5009786 | None:intergenic |
| AGTTGAAGATAGCAACAGAA+AGG | 0.574228 | 5_1:+5013927 | None:intergenic |
| TGCTTCCTTGGATGATCTCG+AGG | 0.574515 | 5_1:+5011009 | None:intergenic |
| GAAGATTGGTTAGATGAGGT+AGG | 0.577291 | 5_1:-5009697 | Msa0713110:three_prime_UTR |
| TGGAGCTGAATTGTCGCCAC+AGG | 0.577474 | 5_1:+5010614 | None:intergenic |
| TGACAGCATTGCTTATTGCA+AGG | 0.578759 | 5_1:-5010352 | Msa0713110:intron |
| TAGTGAAGATTGGTTAGATG+AGG | 0.581454 | 5_1:-5009701 | Msa0713110:three_prime_UTR |
| TCTTAACAGAATGGTGTTCG+AGG | 0.581911 | 5_1:-5011479 | Msa0713110:intron |
| ATGTTATAGAGGAGTGATGG+TGG | 0.584052 | 5_1:-5010426 | Msa0713110:intron |
| GAAAGGATATGGATTTGTGA+AGG | 0.585887 | 5_1:+5013944 | None:intergenic |
| TAACCATGCCAAGAAAGTTG+TGG | 0.588617 | 5_1:+5010042 | None:intergenic |
| TATCCTTGCACCTATGAACC+AGG | 0.595518 | 5_1:-5013192 | Msa0713110:CDS |
| GCTGGTGCAAGATCAGCCAC+AGG | 0.596230 | 5_1:-5013221 | Msa0713110:CDS |
| ATGATGTTATAGAGGAGTGA+TGG | 0.597245 | 5_1:-5010429 | Msa0713110:intron |
| GGTACATGTTCCCGGTTGGT+CGG | 0.601217 | 5_1:-5011105 | Msa0713110:CDS |
| ACATGCGGTTCATGTGATGC+TGG | 0.602805 | 5_1:-5013476 | Msa0713110:CDS |
| AACAGGTACATGTTCCCGGT+TGG | 0.603434 | 5_1:-5011109 | Msa0713110:CDS |
| TCTTGGGCAACCGACCAACC+GGG | 0.611820 | 5_1:+5011095 | None:intergenic |
| TCATCCAAGGAAGCAGCTGA+AGG | 0.614391 | 5_1:-5011001 | Msa0713110:CDS |
| GCAAATGGTCATCTCACTTG+TGG | 0.614406 | 5_1:-5010378 | Msa0713110:CDS |
| ATTCTCCTCGAGATCATCCA+AGG | 0.615003 | 5_1:-5011014 | Msa0713110:CDS |
| TTTGCTGCATCAACAGCTTG+TGG | 0.623142 | 5_1:+5010396 | None:intergenic |
| GGAGATGAAGGTATGCAACC+GGG | 0.627950 | 5_1:-5010735 | Msa0713110:CDS |
| CATCCTGGTTCATAGGTGCA+AGG | 0.632672 | 5_1:+5013189 | None:intergenic |
| TGAGGTAGGCATCAATTGTG+GGG | 0.634988 | 5_1:-5009683 | Msa0713110:three_prime_UTR |
| GGTGCAGCTTCTGAAGCAGG+TGG | 0.637388 | 5_1:+5010163 | None:intergenic |
| GGTGGAGGTGGAGAAATTGG+AGG | 0.643553 | 5_1:+5010181 | None:intergenic |
| TCTCTTTATACAGCTGTCAG+GGG | 0.646445 | 5_1:-5009577 | Msa0713110:three_prime_UTR |
| AGATTCCATACAATAACACT+AGG | 0.646448 | 5_1:+5009932 | None:intergenic |
| TGCAAGGATAATTGAACCTG+TGG | 0.658279 | 5_1:+5013205 | None:intergenic |
| GTGGAGGTGGAGAAATTGGA+GGG | 0.666110 | 5_1:+5010182 | None:intergenic |
| GAGGTAGGCATCAATTGTGG+GGG | 0.668121 | 5_1:-5009682 | Msa0713110:three_prime_UTR |
| CCGAATCGTTCTCAGGCCTG+TGG | 0.668995 | 5_1:-5010630 | Msa0713110:CDS |
| TGGTTGTGTCATTCTACTGG+AGG | 0.681534 | 5_1:-5011419 | Msa0713110:CDS |
| TAGCAGATCGGAGAAACATG+CGG | 0.699281 | 5_1:-5013491 | Msa0713110:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATAAATAAT+TGG | - | chr5_1:5011361-5011380 | Msa0713110:intron | 0.0% |
| !!! | AAATTTTTCAATTAGAATAT+AGG | + | chr5_1:5010184-5010203 | None:intergenic | 10.0% |
| !! | ATTTATTAGTTAAAATTACT+TGG | - | chr5_1:5010612-5010631 | Msa0713110:CDS | 10.0% |
| !!! | AAAAATGATAAATTTTTCAT+TGG | - | chr5_1:5011162-5011181 | Msa0713110:CDS | 10.0% |
| !!! | GTTTTATTATAAAAAAAAAG+GGG | - | chr5_1:5011606-5011625 | Msa0713110:intron | 10.0% |
| !!! | TTTTATTATAAAAAAAAAGG+GGG | - | chr5_1:5011607-5011626 | Msa0713110:intron | 10.0% |
| !! | AATAAAATGATAATTGAAAA+AGG | + | chr5_1:5011692-5011711 | None:intergenic | 10.0% |
| !! | TTTATTCTATCATAAAAAAT+GGG | + | chr5_1:5011773-5011792 | None:intergenic | 10.0% |
| !! | ATTTATTCTATCATAAAAAA+TGG | + | chr5_1:5011774-5011793 | None:intergenic | 10.0% |
| !!! | TTTTTATAATGATAATGTGA+AGG | - | chr5_1:5010236-5010255 | Msa0713110:intron | 15.0% |
| !! | TGACTTATTAAAATTAATTC+TGG | + | chr5_1:5010893-5010912 | None:intergenic | 15.0% |
| !!! | TATAATGTCTTTTTCTTTTA+GGG | - | chr5_1:5011205-5011224 | Msa0713110:CDS | 15.0% |
| !! | AAAAAAAAAAAAAACTGTCA+CGG | - | chr5_1:5013998-5014017 | Msa0713110:five_prime_UTR | 15.0% |
| !! | AAGATACAAACTTTGTTAAT+GGG | + | chr5_1:5010159-5010178 | None:intergenic | 20.0% |
| !! | AAAGATACAAACTTTGTTAA+TGG | + | chr5_1:5010160-5010179 | None:intergenic | 20.0% |
| !! | AAGATTGAATATTGAAATTG+AGG | - | chr5_1:5010569-5010588 | Msa0713110:CDS | 20.0% |
| !! | ACAATAGGTTTGATAAAATA+TGG | - | chr5_1:5010980-5010999 | Msa0713110:CDS | 20.0% |
| !!! | GTATAATGTCTTTTTCTTTT+AGG | - | chr5_1:5011204-5011223 | Msa0713110:CDS | 20.0% |
| !!! | ATAATGTCTTTTTCTTTTAG+GGG | - | chr5_1:5011206-5011225 | Msa0713110:CDS | 20.0% |
| !!! | CAAGCAATATATTTTTATAG+TGG | + | chr5_1:5011639-5011658 | None:intergenic | 20.0% |
| !! | TAATGACATAACATAAACTT+TGG | - | chr5_1:5012217-5012236 | Msa0713110:intron | 20.0% |
| !!! | AAAAACATGTTTTAACTACT+TGG | - | chr5_1:5012618-5012637 | Msa0713110:intron | 20.0% |
| !! | TTAATAGTATGATACGATTA+TGG | - | chr5_1:5012739-5012758 | Msa0713110:intron | 20.0% |
| !!! | ATATGTTTGAGAATTTTAGA+TGG | - | chr5_1:5012783-5012802 | Msa0713110:intron | 20.0% |
| !!! | TACTAATGATTTGTTAATGA+TGG | - | chr5_1:5013085-5013104 | Msa0713110:intron | 20.0% |
| !!! | TGCTATTGTTTAATCATTTT+AGG | + | chr5_1:5013227-5013246 | None:intergenic | 20.0% |
| !!! | TACAATAAGGTAAAGTTTTA+TGG | + | chr5_1:5013279-5013298 | None:intergenic | 20.0% |
| !! | TAAATCGTTTCATCTTTATA+AGG | + | chr5_1:5013936-5013955 | None:intergenic | 20.0% |
| !! | TATAAAGATGAAACGATTTA+TGG | - | chr5_1:5013936-5013955 | Msa0713110:five_prime_UTR | 20.0% |
| ! | TAAACACAAAAGTAGAATGA+AGG | - | chr5_1:5009698-5009717 | Msa0713110:three_prime_UTR | 25.0% |
| !! | TTGTATGGATTAAAAACAAC+AGG | + | chr5_1:5009865-5009884 | None:intergenic | 25.0% |
| ! | TGACGATTAATACAAAGATT+TGG | + | chr5_1:5009907-5009926 | None:intergenic | 25.0% |
| ! | AATTATTATTACCTTCAAGC+TGG | + | chr5_1:5009951-5009970 | None:intergenic | 25.0% |
| ! | AGATACAAACTTTGTTAATG+GGG | + | chr5_1:5010158-5010177 | None:intergenic | 25.0% |
| ! | TATGAATGTGAATAGTCTAT+TGG | - | chr5_1:5010470-5010489 | Msa0713110:intron | 25.0% |
| ! | TAAATAAAAACTAGTTGAGC+TGG | + | chr5_1:5010597-5010616 | None:intergenic | 25.0% |
| !!! | ATTTCTTTTTCGTGTATGTT+TGG | - | chr5_1:5010707-5010726 | Msa0713110:CDS | 25.0% |
| ! | CGGGAATTATCAATAAAAAA+GGG | + | chr5_1:5011048-5011067 | None:intergenic | 25.0% |
| ! | ACGGGAATTATCAATAAAAA+AGG | + | chr5_1:5011049-5011068 | None:intergenic | 25.0% |
| !!! | TTTTTTATTGATAATTCCCG+TGG | - | chr5_1:5011048-5011067 | Msa0713110:CDS | 25.0% |
| !! | ATTGGATGTCTTTTTCTTTT+AGG | - | chr5_1:5011180-5011199 | Msa0713110:CDS | 25.0% |
| !! | TTGGATGTCTTTTTCTTTTA+GGG | - | chr5_1:5011181-5011200 | Msa0713110:CDS | 25.0% |
| ! | TATACATGTTCATTGTTCAA+TGG | - | chr5_1:5011533-5011552 | Msa0713110:intron | 25.0% |
| ! | ATACATGTTCATTGTTCAAT+GGG | - | chr5_1:5011534-5011553 | Msa0713110:intron | 25.0% |
| ! | CAGCATCTAATCTTAAAATA+TGG | + | chr5_1:5011725-5011744 | None:intergenic | 25.0% |
| !! | GCAATTTTATAAACCAAAGA+AGG | - | chr5_1:5011850-5011869 | Msa0713110:intron | 25.0% |
| !! | ATGATTTTCAAAACGATGTA+TGG | - | chr5_1:5012100-5012119 | Msa0713110:intron | 25.0% |
| ! | AATAATCACCATCTTTATTG+AGG | - | chr5_1:5012354-5012373 | Msa0713110:intron | 25.0% |
| ! | AACATAATCCTCAATAAAGA+TGG | + | chr5_1:5012365-5012384 | None:intergenic | 25.0% |
| !!! | GTAGTTAAAACATGTTTTTG+AGG | + | chr5_1:5012617-5012636 | None:intergenic | 25.0% |
| ! | GTACACAGTTAAATACAATA+AGG | + | chr5_1:5013292-5013311 | None:intergenic | 25.0% |
| ! | GTGTACTAATATATATGTTC+AGG | - | chr5_1:5013306-5013325 | Msa0713110:intron | 25.0% |
| ! | TTGTTTGCTTGACTATTATT+AGG | + | chr5_1:5013421-5013440 | None:intergenic | 25.0% |
| !! | ATAACCTGAAAAGACATTTT+TGG | + | chr5_1:5013806-5013825 | None:intergenic | 25.0% |
| ! | ACAGGAAAAAAGTTGAATTA+TGG | - | chr5_1:5013893-5013912 | Msa0713110:five_prime_UTR | 25.0% |
| !! | TTTATAAGGTATCTCATAAG+TGG | + | chr5_1:5013922-5013941 | None:intergenic | 25.0% |
| TCTTTCATAAGAAGCGATTA+AGG | + | chr5_1:5009533-5009552 | None:intergenic | 30.0% | |
| AAGAGGAAAAAAGCTGATTA+AGG | + | chr5_1:5009575-5009594 | None:intergenic | 30.0% | |
| !! | TCTACTTTTGTGTTTAGAGA+GGG | + | chr5_1:5009694-5009713 | None:intergenic | 30.0% |
| !! | TTCTACTTTTGTGTTTAGAG+AGG | + | chr5_1:5009695-5009714 | None:intergenic | 30.0% |
| ! | ATGATTAGTTGAAGATGCAT+AGG | + | chr5_1:5009739-5009758 | None:intergenic | 30.0% |
| ! | AATGATAATGTGAAGGTGAA+AGG | - | chr5_1:5010243-5010262 | Msa0713110:intron | 30.0% |
| ! | AACCATGAATACCGATTAAA+CGG | + | chr5_1:5010273-5010292 | None:intergenic | 30.0% |
| GACACATAATTCATTTGCTT+TGG | - | chr5_1:5010296-5010315 | Msa0713110:intron | 30.0% | |
| CTTATGTGACAACTAAGAAA+TGG | - | chr5_1:5010640-5010659 | Msa0713110:CDS | 30.0% | |
| ! | GCTACAAGTAGAATCAATTT+TGG | + | chr5_1:5010749-5010768 | None:intergenic | 30.0% |
| TTCTACTTGTAGCTATAGAT+TGG | - | chr5_1:5010756-5010775 | Msa0713110:intron | 30.0% | |
| ACAATGCATCATGTTAAAGA+AGG | + | chr5_1:5011075-5011094 | None:intergenic | 30.0% | |
| TCTTTAACATGATGCATTGT+AGG | - | chr5_1:5011075-5011094 | Msa0713110:CDS | 30.0% | |
| ! | TGGATGTCTTTTTCTTTTAG+GGG | - | chr5_1:5011182-5011201 | Msa0713110:CDS | 30.0% |
| CTAGTAGTTGTTGAATTAGT+TGG | - | chr5_1:5011398-5011417 | Msa0713110:CDS | 30.0% | |
| GTCACAATTACAACATGATA+CGG | - | chr5_1:5011795-5011814 | Msa0713110:intron | 30.0% | |
| TGTTGTGTATCTTAACAGAA+TGG | - | chr5_1:5012051-5012070 | Msa0713110:intron | 30.0% | |
| ! | AACATAAACTTTGGTGTGTT+TGG | - | chr5_1:5012226-5012245 | Msa0713110:intron | 30.0% |
| CATTGATAGACATAGACAAA+TGG | + | chr5_1:5012267-5012286 | None:intergenic | 30.0% | |
| TGTCTATGTCTATCAATGAT+CGG | - | chr5_1:5012269-5012288 | Msa0713110:intron | 30.0% | |
| AAGATGGTGATTATTTCAGA+TGG | + | chr5_1:5012349-5012368 | None:intergenic | 30.0% | |
| TGTGCAGTAAATAAGTGAAT+TGG | - | chr5_1:5012710-5012729 | Msa0713110:intron | 30.0% | |
| GTGCAGTAAATAAGTGAATT+GGG | - | chr5_1:5012711-5012730 | Msa0713110:intron | 30.0% | |
| ! | AGAATTTTAGATGGAGATGA+AGG | - | chr5_1:5012792-5012811 | Msa0713110:intron | 30.0% |
| TAATCAACAGCGATGAAATT+TGG | + | chr5_1:5012999-5013018 | None:intergenic | 30.0% | |
| CATCAAATCGTTAATCACAA+AGG | - | chr5_1:5013054-5013073 | Msa0713110:intron | 30.0% | |
| TGATGGTTATGATGTTATAG+AGG | - | chr5_1:5013102-5013121 | Msa0713110:intron | 30.0% | |
| !!! | GTTTAATCATTTTAGGATGC+AGG | + | chr5_1:5013220-5013239 | None:intergenic | 30.0% |
| ! | TGATTCCTAGTGTTATTGTA+TGG | - | chr5_1:5013602-5013621 | Msa0713110:intron | 30.0% |
| AGATTCCATACAATAACACT+AGG | + | chr5_1:5013610-5013629 | None:intergenic | 30.0% | |
| !!! | TTTATGGTTGTGTTTTGACT+TGG | - | chr5_1:5013655-5013674 | Msa0713110:intron | 30.0% |
| GTTGAATGATTCACAACTAT+TGG | - | chr5_1:5013681-5013700 | Msa0713110:intron | 30.0% | |
| !! | TACATAGCATAAGCTGTTTT+TGG | - | chr5_1:5013713-5013732 | Msa0713110:intron | 30.0% |
| AGTTCACTTAAGAAACTTGT+CGG | + | chr5_1:5013756-5013775 | None:intergenic | 30.0% | |
| GGAAAAAAGTTGAATTATGG+TGG | - | chr5_1:5013896-5013915 | Msa0713110:five_prime_UTR | 30.0% | |
| ATATGGATTTGTGAAGGAAG+AGG | + | chr5_1:5009592-5009611 | None:intergenic | 35.0% | |
| GAAAGGATATGGATTTGTGA+AGG | + | chr5_1:5009598-5009617 | None:intergenic | 35.0% | |
| AGATAGCAACAGAAAGGATA+TGG | + | chr5_1:5009609-5009628 | None:intergenic | 35.0% | |
| AGTTGAAGATAGCAACAGAA+AGG | + | chr5_1:5009615-5009634 | None:intergenic | 35.0% | |
| GCAGAAAACGAAACATTGTA+TGG | + | chr5_1:5009880-5009899 | None:intergenic | 35.0% | |
| !!! | GTTGTTTTTAACCATGTACG+AGG | - | chr5_1:5010025-5010044 | Msa0713110:exon | 35.0% |
| ! | TGAAAGGTTTGCCGTTTAAT+CGG | - | chr5_1:5010259-5010278 | Msa0713110:intron | 35.0% |
| CATAATTCATTTGCTTTGGC+TGG | - | chr5_1:5010300-5010319 | Msa0713110:intron | 35.0% | |
| GACAACTAAGAAATGGTCTA+TGG | - | chr5_1:5010647-5010666 | Msa0713110:CDS | 35.0% | |
| TTTGACCGTAGAAACTAGAA+AGG | + | chr5_1:5010955-5010974 | None:intergenic | 35.0% | |
| TACGGTCAAACAAACACAAT+AGG | - | chr5_1:5010965-5010984 | Msa0713110:CDS | 35.0% | |
| ATTAATCCTTCTCTTCCTTG+TGG | - | chr5_1:5011022-5011041 | Msa0713110:CDS | 35.0% | |
| ATCAATAAAAAAGGGCCACA+AGG | + | chr5_1:5011040-5011059 | None:intergenic | 35.0% | |
| ATCATGTTAAAGAAGGTCCA+CGG | + | chr5_1:5011068-5011087 | None:intergenic | 35.0% | |
| TGTTGACCACATAAATGAAG+TGG | - | chr5_1:5011287-5011306 | Msa0713110:intron | 35.0% | |
| GTTGACCACATAAATGAAGT+GGG | - | chr5_1:5011288-5011307 | Msa0713110:intron | 35.0% | |
| TGGCACGGTTGAAATAAAAT+TGG | - | chr5_1:5011322-5011341 | Msa0713110:intron | 35.0% | |
| AAGTAAGATGTGTGCTTTCA+AGG | + | chr5_1:5011502-5011521 | None:intergenic | 35.0% | |
| ! | AGCACACATCTTACTTGTTA+AGG | - | chr5_1:5011506-5011525 | Msa0713110:intron | 35.0% |
| GGCAATCGTGTATTCTAATT+TGG | - | chr5_1:5011871-5011890 | Msa0713110:intron | 35.0% | |
| ! | CGATAAATCGTTGATTGTTC+AGG | + | chr5_1:5012504-5012523 | None:intergenic | 35.0% |
| ! | CTAGATTTTGTGTTCATTGG+TGG | + | chr5_1:5012855-5012874 | None:intergenic | 35.0% |
| CACCAATGAACACAAAATCT+AGG | - | chr5_1:5012853-5012872 | Msa0713110:intron | 35.0% | |
| ! | GACCTAGATTTTGTGTTCAT+TGG | + | chr5_1:5012858-5012877 | None:intergenic | 35.0% |
| GTCTTCATCATGCTAAGTAA+TGG | + | chr5_1:5012948-5012967 | None:intergenic | 35.0% | |
| ! | CATCGCTGTTGATTATTATC+AGG | - | chr5_1:5013004-5013023 | Msa0713110:intron | 35.0% |
| ATGATGTTATAGAGGAGTGA+TGG | - | chr5_1:5013110-5013129 | Msa0713110:intron | 35.0% | |
| AGCATATGCTGCATATTCAT+TGG | - | chr5_1:5013243-5013262 | Msa0713110:CDS | 35.0% | |
| GACTATTATTAGGAGACTTC+TGG | + | chr5_1:5013411-5013430 | None:intergenic | 35.0% | |
| CAAGCAAACAATGCATATAG+TGG | - | chr5_1:5013430-5013449 | Msa0713110:CDS | 35.0% | |
| ! | AACAGCTATGATGATGCAAT+TGG | - | chr5_1:5013456-5013475 | Msa0713110:CDS | 35.0% |
| TTTGGTTACCACAACTTTCT+TGG | - | chr5_1:5013489-5013508 | Msa0713110:intron | 35.0% | |
| !!! | TGAGTCCTTTTTTCATCACT+CGG | - | chr5_1:5013629-5013648 | Msa0713110:CDS | 35.0% |
| !!! | CTGAAAAGACATTTTTGGCA+TGG | + | chr5_1:5013801-5013820 | None:intergenic | 35.0% |
| ! | CATGCCAAAAATGTCTTTTC+AGG | - | chr5_1:5013799-5013818 | Msa0713110:intron | 35.0% |
| AACTGAGATCTAGTGAAGAT+TGG | - | chr5_1:5013828-5013847 | Msa0713110:intron | 35.0% | |
| ! | TAGTGAAGATTGGTTAGATG+AGG | - | chr5_1:5013838-5013857 | Msa0713110:intron | 35.0% |
| CACATATTCATCCAGCTTGA+AGG | - | chr5_1:5009937-5009956 | Msa0713110:three_prime_UTR | 40.0% | |
| TGTCAAACATGTCCTGCAAA+TGG | - | chr5_1:5010093-5010112 | Msa0713110:CDS | 40.0% | |
| GATAGTATCCTGCTACATCT+GGG | + | chr5_1:5010129-5010148 | None:intergenic | 40.0% | |
| AGATAGTATCCTGCTACATC+TGG | + | chr5_1:5010130-5010149 | None:intergenic | 40.0% | |
| ! | TGCCGTTTAATCGGTATTCA+TGG | - | chr5_1:5010268-5010287 | Msa0713110:intron | 40.0% |
| TGCAAGGATAATTGAACCTG+TGG | + | chr5_1:5010337-5010356 | None:intergenic | 40.0% | |
| ATAGTGTCATCCTGGTTCAT+AGG | + | chr5_1:5010360-5010379 | None:intergenic | 40.0% | |
| CTAGAAAGGTCGTGTATGTT+TGG | + | chr5_1:5010941-5010960 | None:intergenic | 40.0% | |
| !! | CACGACCTTTCTAGTTTCTA+CGG | - | chr5_1:5010947-5010966 | Msa0713110:intron | 40.0% |
| TATGGAAGTCCATGCATACA+CGG | - | chr5_1:5010998-5011017 | Msa0713110:CDS | 40.0% | |
| TCATGTTAAAGAAGGTCCAC+GGG | + | chr5_1:5011067-5011086 | None:intergenic | 40.0% | |
| CTACACCCACTTCATTTATG+TGG | + | chr5_1:5011296-5011315 | None:intergenic | 40.0% | |
| GAATACACGATTGCCTTCTT+TGG | + | chr5_1:5011866-5011885 | None:intergenic | 40.0% | |
| TCTTAACAGAATGGTGTTCG+AGG | - | chr5_1:5012060-5012079 | Msa0713110:intron | 40.0% | |
| ! | GTATGGTTGTGTCATTCTAC+TGG | - | chr5_1:5012117-5012136 | Msa0713110:intron | 40.0% |
| TAGAGACATGCGTTCATTTC+TGG | - | chr5_1:5012315-5012334 | Msa0713110:intron | 40.0% | |
| AGCTTGGAAGACCTTAGTTA+GGG | + | chr5_1:5012401-5012420 | None:intergenic | 40.0% | |
| AAGCTTGGAAGACCTTAGTT+AGG | + | chr5_1:5012402-5012421 | None:intergenic | 40.0% | |
| GATTAACAGGTACATGTTCC+CGG | - | chr5_1:5012426-5012445 | Msa0713110:intron | 40.0% | |
| ACGACGTATTTCCATGTGAA+AGG | + | chr5_1:5012568-5012587 | None:intergenic | 40.0% | |
| AGGCATGCAATTACTCACAT+TGG | + | chr5_1:5012597-5012616 | None:intergenic | 40.0% | |
| !! | TTTCGATTTGGACAAGAACC+CGG | + | chr5_1:5012825-5012844 | None:intergenic | 40.0% |
| ATGTTATAGAGGAGTGATGG+TGG | - | chr5_1:5013113-5013132 | Msa0713110:intron | 40.0% | |
| TGACAGCATTGCTTATTGCA+AGG | - | chr5_1:5013187-5013206 | Msa0713110:CDS | 40.0% | |
| GCAATTGGCTGTGTTAACTT+TGG | - | chr5_1:5013471-5013490 | Msa0713110:CDS | 40.0% | |
| TTACCACAACTTTCTTGGCA+TGG | - | chr5_1:5013494-5013513 | Msa0713110:intron | 40.0% | |
| TAACCATGCCAAGAAAGTTG+TGG | + | chr5_1:5013500-5013519 | None:intergenic | 40.0% | |
| !! | AAGTGCCGAGTGATGAAAAA+AGG | + | chr5_1:5013637-5013656 | None:intergenic | 40.0% |
| TTTCATCACTCGGCACTTTA+TGG | - | chr5_1:5013639-5013658 | Msa0713110:CDS | 40.0% | |
| GTGAACTACCAAATTTGAGC+TGG | - | chr5_1:5013769-5013788 | Msa0713110:intron | 40.0% | |
| ! | GAAGATTGGTTAGATGAGGT+AGG | - | chr5_1:5013842-5013861 | Msa0713110:exon | 40.0% |
| ATGAGGTAGGCATCAATTGT+GGG | - | chr5_1:5013855-5013874 | Msa0713110:five_prime_UTR | 40.0% | |
| ACTCTCTTTATACAGCTGTC+AGG | - | chr5_1:5013960-5013979 | Msa0713110:five_prime_UTR | 40.0% | |
| CTCTCTTTATACAGCTGTCA+GGG | - | chr5_1:5013961-5013980 | Msa0713110:five_prime_UTR | 40.0% | |
| TCTCTTTATACAGCTGTCAG+GGG | - | chr5_1:5013962-5013981 | Msa0713110:five_prime_UTR | 40.0% | |
| TAGCAGATCGGAGAAACATG+CGG | - | chr5_1:5010048-5010067 | Msa0713110:CDS | 45.0% | |
| GGACGTGTATTTCCATTTGC+AGG | + | chr5_1:5010108-5010127 | None:intergenic | 45.0% | |
| TATCCTTGCACCTATGAACC+AGG | - | chr5_1:5010347-5010366 | Msa0713110:intron | 45.0% | |
| GATCAGCAATAGTGTCATCC+TGG | + | chr5_1:5010368-5010387 | None:intergenic | 45.0% | |
| ATGGAAGTCCATGCATACAC+GGG | - | chr5_1:5010999-5011018 | Msa0713110:CDS | 45.0% | |
| GGATTAATCCCGTGTATGCA+TGG | + | chr5_1:5011010-5011029 | None:intergenic | 45.0% | |
| TGAAGTGGGTGTAGTGTAGA+TGG | - | chr5_1:5011302-5011321 | Msa0713110:intron | 45.0% | |
| ! | TGGTTGTGTCATTCTACTGG+AGG | - | chr5_1:5012120-5012139 | Msa0713110:intron | 45.0% |
| TCAGTTCATTCGTAAGTGCG+TGG | - | chr5_1:5012157-5012176 | Msa0713110:intron | 45.0% | |
| ACTAAGGTCTTCCAAGCTTC+AGG | - | chr5_1:5012403-5012422 | Msa0713110:intron | 45.0% | |
| CTAAGGTCTTCCAAGCTTCA+GGG | - | chr5_1:5012404-5012423 | Msa0713110:intron | 45.0% | |
| TCCAAGCTTCAGGGATTAAC+AGG | - | chr5_1:5012413-5012432 | Msa0713110:intron | 45.0% | |
| ACCTGTTAATCCCTGAAGCT+TGG | + | chr5_1:5012417-5012436 | None:intergenic | 45.0% | |
| AGGATCATGTCATCGACAAC+AGG | + | chr5_1:5012484-5012503 | None:intergenic | 45.0% | |
| ATTCTCCTCGAGATCATCCA+AGG | - | chr5_1:5012525-5012544 | Msa0713110:intron | 45.0% | |
| !! | CTGAAGGCATTCCTTTCACA+TGG | - | chr5_1:5012554-5012573 | Msa0713110:intron | 45.0% |
| ! | TGGAGATGAAGGTATGCAAC+CGG | - | chr5_1:5012803-5012822 | Msa0713110:intron | 45.0% |
| GGTGGCGATTCATTTCGATT+TGG | + | chr5_1:5012837-5012856 | None:intergenic | 45.0% | |
| TTCTACACCGAATCGTTCTC+AGG | - | chr5_1:5012902-5012921 | Msa0713110:intron | 45.0% | |
| CAGCGATGAAATTTGGCCAT+CGG | + | chr5_1:5012992-5013011 | None:intergenic | 45.0% | |
| !! | TTATAGAGGAGTGATGGTGG+AGG | - | chr5_1:5013116-5013135 | Msa0713110:intron | 45.0% |
| TTTGCTGCATCAACAGCTTG+TGG | + | chr5_1:5013146-5013165 | None:intergenic | 45.0% | |
| CAAGCTGTTGATGCAGCAAA+TGG | - | chr5_1:5013146-5013165 | Msa0713110:intron | 45.0% | |
| GCAAATGGTCATCTCACTTG+TGG | - | chr5_1:5013161-5013180 | Msa0713110:intron | 45.0% | |
| GTTCAGGCAAATGCTACGTT+TGG | - | chr5_1:5013322-5013341 | Msa0713110:intron | 45.0% | |
| !! | GGAGACTTCTGGTTTCCATT+TGG | + | chr5_1:5013400-5013419 | None:intergenic | 45.0% |
| GATGAGGTAGGCATCAATTG+TGG | - | chr5_1:5013854-5013873 | Msa0713110:five_prime_UTR | 45.0% | |
| TGAGGTAGGCATCAATTGTG+GGG | - | chr5_1:5013856-5013875 | Msa0713110:five_prime_UTR | 45.0% | |
| ! | GGGGGCTTTATATTTCTCAC+AGG | - | chr5_1:5013875-5013894 | Msa0713110:five_prime_UTR | 45.0% |
| !! | AATAATAAAAAATATGAAAA+GGG | + | chr5_1:5010413-5010432 | None:intergenic | 5.0% |
| !! | TAATAATAAAAAATATGAAA+AGG | + | chr5_1:5010414-5010433 | None:intergenic | 5.0% |
| !!! | CATATTTTTTATTATTATTA+TGG | - | chr5_1:5010417-5010436 | Msa0713110:CDS | 5.0% |
| !!! | ATGTTTTATTATAAAAAAAA+AGG | - | chr5_1:5011604-5011623 | Msa0713110:intron | 5.0% |
| !!! | TGTTTTATTATAAAAAAAAA+GGG | - | chr5_1:5011605-5011624 | Msa0713110:intron | 5.0% |
| CCATGTACGAGGTAGCAGAT+CGG | - | chr5_1:5010036-5010055 | Msa0713110:exon | 50.0% | |
| ACATGCGGTTCATGTGATGC+TGG | - | chr5_1:5010063-5010082 | Msa0713110:CDS | 50.0% | |
| ATACACGTCCCAGATGTAGC+AGG | - | chr5_1:5010118-5010137 | Msa0713110:CDS | 50.0% | |
| CATCCTGGTTCATAGGTGCA+AGG | + | chr5_1:5010353-5010372 | None:intergenic | 50.0% | |
| AAAGGGCCACAAGGAAGAGA+AGG | + | chr5_1:5011031-5011050 | None:intergenic | 50.0% | |
| TGGGTGTAGTGTAGATGGCA+CGG | - | chr5_1:5011307-5011326 | Msa0713110:intron | 50.0% | |
| TCTCTAAGCGCGTTTACTGC+AGG | + | chr5_1:5012301-5012320 | None:intergenic | 50.0% | |
| AAGACCTTAGTTAGGGCTGC+AGG | + | chr5_1:5012394-5012413 | None:intergenic | 50.0% | |
| AACAGGTACATGTTCCCGGT+TGG | - | chr5_1:5012430-5012449 | Msa0713110:intron | 50.0% | |
| TGCTTCCTTGGATGATCTCG+AGG | + | chr5_1:5012533-5012552 | None:intergenic | 50.0% | |
| TCATCCAAGGAAGCAGCTGA+AGG | - | chr5_1:5012538-5012557 | Msa0713110:intron | 50.0% | |
| AATGCCTTCAGCTGCTTCCT+TGG | + | chr5_1:5012545-5012564 | None:intergenic | 50.0% | |
| ! | GGAGATGAAGGTATGCAACC+GGG | - | chr5_1:5012804-5012823 | Msa0713110:intron | 50.0% |
| AAGACTTGCCATGAAGCTGC+CGG | - | chr5_1:5012963-5012982 | Msa0713110:intron | 50.0% | |
| ! | GAAATTTGGCCATCGGTTGC+CGG | + | chr5_1:5012985-5013004 | None:intergenic | 50.0% |
| GTGGAGGTGGAGAAATTGGA+GGG | + | chr5_1:5013360-5013379 | None:intergenic | 50.0% | |
| !! | TTTGGTGCAGCTTCTGAAGC+AGG | + | chr5_1:5013382-5013401 | None:intergenic | 50.0% |
| GCTTCAGAAGCTGCACCAAA+TGG | - | chr5_1:5013382-5013401 | Msa0713110:intron | 50.0% | |
| ! | GGCTTGCTCCAGCTCAAATT+TGG | + | chr5_1:5013780-5013799 | None:intergenic | 50.0% |
| GAGGTAGGCATCAATTGTGG+GGG | - | chr5_1:5013857-5013876 | Msa0713110:five_prime_UTR | 50.0% | |
| CCGATCTGCTACCTCGTACA+TGG | + | chr5_1:5010039-5010058 | None:intergenic | 55.0% | |
| AGCTCCTGCAGCCCTAACTA+AGG | - | chr5_1:5012387-5012406 | Msa0713110:intron | 55.0% | |
| GGTACATGTTCCCGGTTGGT+CGG | - | chr5_1:5012434-5012453 | Msa0713110:intron | 55.0% | |
| TTCTTGGGCAACCGACCAAC+CGG | + | chr5_1:5012448-5012467 | None:intergenic | 55.0% | |
| GTTGGTCGGTTGCCCAAGAA+CGG | - | chr5_1:5012448-5012467 | Msa0713110:intron | 55.0% | |
| TGCCCAAGAACGGTAGCGAT+TGG | - | chr5_1:5012458-5012477 | Msa0713110:intron | 55.0% | |
| GGCCAATCGCTACCGTTCTT+GGG | + | chr5_1:5012463-5012482 | None:intergenic | 55.0% | |
| AGGCCAATCGCTACCGTTCT+TGG | + | chr5_1:5012464-5012483 | None:intergenic | 55.0% | |
| CCACAGGCCTGAGAACGATT+CGG | + | chr5_1:5012912-5012931 | None:intergenic | 55.0% | |
| TGGAGCTGAATTGTCGCCAC+AGG | + | chr5_1:5012928-5012947 | None:intergenic | 55.0% | |
| GGTGGAGGTGGAGAAATTGG+AGG | + | chr5_1:5013361-5013380 | None:intergenic | 55.0% | |
| GCAGGTGGAGGTGGAGAAAT+TGG | + | chr5_1:5013364-5013383 | None:intergenic | 55.0% | |
| GCTGGTGCAAGATCAGCCAC+AGG | - | chr5_1:5010318-5010337 | Msa0713110:intron | 60.0% | |
| TCTTGGGCAACCGACCAACC+GGG | + | chr5_1:5012447-5012466 | None:intergenic | 60.0% | |
| CCGAATCGTTCTCAGGCCTG+TGG | - | chr5_1:5012909-5012928 | Msa0713110:intron | 60.0% | |
| ATCGGTTGCCGGCAGCTTCA+TGG | + | chr5_1:5012974-5012993 | None:intergenic | 60.0% | |
| ATGAAGCTGCCGGCAACCGA+TGG | - | chr5_1:5012973-5012992 | Msa0713110:intron | 60.0% | |
| !! | GCTTCTGAAGCAGGTGGAGG+TGG | + | chr5_1:5013373-5013392 | None:intergenic | 60.0% |
| !! | GCAGCTTCTGAAGCAGGTGG+AGG | + | chr5_1:5013376-5013395 | None:intergenic | 60.0% |
| !! | GGTGCAGCTTCTGAAGCAGG+TGG | + | chr5_1:5013379-5013398 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 5009518 | 5014043 | 5009518 | ID=Msa0713110;Name=Msa0713110 |
| chr5_1 | mRNA | 5009518 | 5014043 | 5009518 | ID=Msa0713110-mRNA-1;Parent=Msa0713110;Name=Msa0713110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=196|1|1|1|0.75|0.88|9|521|407 |
| chr5_1 | exon | 5009518 | 5010233 | 5009518 | ID=Msa0713110-mRNA-1:exon:2192;Parent=Msa0713110-mRNA-1 |
| chr5_1 | exon | 5010353 | 5010439 | 5010353 | ID=Msa0713110-mRNA-1:exon:2191;Parent=Msa0713110-mRNA-1 |
| chr5_1 | exon | 5010536 | 5010759 | 5010536 | ID=Msa0713110-mRNA-1:exon:2190;Parent=Msa0713110-mRNA-1 |
| chr5_1 | exon | 5010963 | 5011266 | 5010963 | ID=Msa0713110-mRNA-1:exon:2189;Parent=Msa0713110-mRNA-1 |
| chr5_1 | exon | 5011394 | 5011492 | 5011394 | ID=Msa0713110-mRNA-1:exon:2188;Parent=Msa0713110-mRNA-1 |
| chr5_1 | exon | 5013166 | 5013303 | 5013166 | ID=Msa0713110-mRNA-1:exon:2187;Parent=Msa0713110-mRNA-1 |
| chr5_1 | exon | 5013394 | 5013507 | 5013394 | ID=Msa0713110-mRNA-1:exon:2186;Parent=Msa0713110-mRNA-1 |
| chr5_1 | exon | 5013603 | 5013659 | 5013603 | ID=Msa0713110-mRNA-1:exon:2185;Parent=Msa0713110-mRNA-1 |
| chr5_1 | exon | 5013842 | 5014043 | 5013842 | ID=Msa0713110-mRNA-1:exon:2184;Parent=Msa0713110-mRNA-1 |
| chr5_1 | five_prime_UTR | 5013848 | 5014043 | 5013848 | ID=Msa0713110-mRNA-1:five_prime_utr;Parent=Msa0713110-mRNA-1 |
| chr5_1 | CDS | 5013842 | 5013847 | 5013842 | ID=Msa0713110-mRNA-1:cds;Parent=Msa0713110-mRNA-1 |
| chr5_1 | CDS | 5013603 | 5013659 | 5013603 | ID=Msa0713110-mRNA-1:cds;Parent=Msa0713110-mRNA-1 |
| chr5_1 | CDS | 5013394 | 5013507 | 5013394 | ID=Msa0713110-mRNA-1:cds;Parent=Msa0713110-mRNA-1 |
| chr5_1 | CDS | 5013166 | 5013303 | 5013166 | ID=Msa0713110-mRNA-1:cds;Parent=Msa0713110-mRNA-1 |
| chr5_1 | CDS | 5011394 | 5011492 | 5011394 | ID=Msa0713110-mRNA-1:cds;Parent=Msa0713110-mRNA-1 |
| chr5_1 | CDS | 5010963 | 5011266 | 5010963 | ID=Msa0713110-mRNA-1:cds;Parent=Msa0713110-mRNA-1 |
| chr5_1 | CDS | 5010536 | 5010759 | 5010536 | ID=Msa0713110-mRNA-1:cds;Parent=Msa0713110-mRNA-1 |
| chr5_1 | CDS | 5010353 | 5010439 | 5010353 | ID=Msa0713110-mRNA-1:cds;Parent=Msa0713110-mRNA-1 |
| chr5_1 | CDS | 5010039 | 5010233 | 5010039 | ID=Msa0713110-mRNA-1:cds;Parent=Msa0713110-mRNA-1 |
| chr5_1 | three_prime_UTR | 5009518 | 5010038 | 5009518 | ID=Msa0713110-mRNA-1:three_prime_utr;Parent=Msa0713110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
