Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116380 | XP_003591227.1 | 98.907 | 183 | 2 | 0 | 1 | 183 | 1 | 183 | 1.51e-127 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116380 | sp|Q8LEK2|TVP23_ARATH | 83.333 | 186 | 28 | 1 | 1 | 183 | 1 | 186 | 7.91e-112 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116380 | G7I9I7 | 98.907 | 183 | 2 | 0 | 1 | 183 | 1 | 183 | 7.22e-128 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008200 | Msa0116380 | 0.805196 | 1.500164e-49 | -8.615850e-47 |
| Msa0010490 | Msa0116380 | 0.805871 | 1.082624e-49 | -8.615850e-47 |
| Msa0020390 | Msa0116380 | 0.830484 | 2.862177e-55 | -8.615850e-47 |
| Msa0036540 | Msa0116380 | 0.823655 | 1.232550e-53 | -8.615850e-47 |
| Msa0059950 | Msa0116380 | 0.802425 | 5.644902e-49 | -8.615850e-47 |
| Msa0072420 | Msa0116380 | 0.821524 | 3.857860e-53 | -8.615850e-47 |
| Msa0080730 | Msa0116380 | 0.849341 | 3.440684e-60 | -8.615850e-47 |
| Msa0090520 | Msa0116380 | 0.803893 | 2.804176e-49 | -8.615850e-47 |
| Msa0093010 | Msa0116380 | 0.809260 | 2.065768e-50 | -8.615850e-47 |
| Msa0115190 | Msa0116380 | 0.831099 | 2.022123e-55 | -8.615850e-47 |
| Msa0116380 | Msa0120880 | 0.829875 | 4.030465e-55 | -8.615850e-47 |
| Msa0116380 | Msa0123510 | 0.803537 | 3.324589e-49 | -8.615850e-47 |
| Msa0116380 | Msa0137990 | 0.807182 | 5.727439e-50 | -8.615850e-47 |
| Msa0116380 | Msa0179030 | 0.802458 | 5.556554e-49 | -8.615850e-47 |
| Msa0116380 | Msa0183850 | 0.826239 | 3.025498e-54 | -8.615850e-47 |
| Msa0116380 | Msa0188350 | 0.840899 | 6.583102e-58 | -8.615850e-47 |
| Msa0116380 | Msa0202110 | 0.825311 | 5.022054e-54 | -8.615850e-47 |
| Msa0116380 | Msa0202410 | 0.808421 | 3.122300e-50 | -8.615850e-47 |
| Msa0116380 | Msa0204960 | 0.847038 | 1.489109e-59 | -8.615850e-47 |
| Msa0116380 | Msa0206690 | 0.803838 | 2.879133e-49 | -8.615850e-47 |
| Msa0116380 | Msa0206830 | 0.801545 | 8.560195e-49 | -8.615850e-47 |
| Msa0116380 | Msa0207670 | 0.805050 | 1.609579e-49 | -8.615850e-47 |
| Msa0116380 | Msa0209350 | 0.807269 | 5.489072e-50 | -8.615850e-47 |
| Msa0116380 | Msa0209500 | 0.848562 | 5.664617e-60 | -8.615850e-47 |
| Msa0116380 | Msa0231100 | 0.800021 | 1.752235e-48 | -8.615850e-47 |
| Msa0116380 | Msa0240900 | 0.825653 | 4.167836e-54 | -8.615850e-47 |
| Msa0116380 | Msa0244980 | 0.800215 | 1.600122e-48 | -8.615850e-47 |
| Msa0116380 | Msa0245430 | 0.810346 | 1.206617e-50 | -8.615850e-47 |
| Msa0116380 | Msa0249580 | 0.818818 | 1.607280e-52 | -8.615850e-47 |
| Msa0116380 | Msa0257490 | 0.851317 | 9.600094e-61 | -8.615850e-47 |
| Msa0116380 | Msa0257520 | 0.803692 | 3.088327e-49 | -8.615850e-47 |
| Msa0116380 | Msa0261170 | 0.805302 | 1.425552e-49 | -8.615850e-47 |
| Msa0116380 | Msa0269470 | 0.813124 | 2.999554e-51 | -8.615850e-47 |
| Msa0116380 | Msa0281530 | 0.857346 | 1.737318e-62 | -8.615850e-47 |
| Msa0116380 | Msa0283420 | 0.815910 | 7.255622e-52 | -8.615850e-47 |
| Msa0116380 | Msa0288080 | 0.828725 | 7.662620e-55 | -8.615850e-47 |
| Msa0116380 | Msa0296790 | 0.814908 | 1.212499e-51 | -8.615850e-47 |
| Msa0116380 | Msa0317970 | 0.842786 | 2.090591e-58 | -8.615850e-47 |
| Msa0116380 | Msa0320590 | 0.836434 | 9.377803e-57 | -8.615850e-47 |
| Msa0116380 | Msa0321690 | 0.833526 | 5.069383e-56 | -8.615850e-47 |
| Msa0116380 | Msa0322240 | 0.805403 | 1.357907e-49 | -8.615850e-47 |
| Msa0116380 | Msa0322900 | 0.805915 | 1.059900e-49 | -8.615850e-47 |
| Msa0116380 | Msa0326480 | 0.816482 | 5.405946e-52 | -8.615850e-47 |
| Msa0116380 | Msa0357900 | 0.872556 | 2.905507e-67 | -8.615850e-47 |
| Msa0116380 | Msa0371500 | 0.829184 | 5.934025e-55 | -8.615850e-47 |
| Msa0116380 | Msa0380100 | 0.815083 | 1.108759e-51 | -8.615850e-47 |
| Msa0116380 | Msa0385500 | 0.846856 | 1.669459e-59 | -8.615850e-47 |
| Msa0116380 | Msa0389210 | 0.835638 | 1.493186e-56 | -8.615850e-47 |
| Msa0116380 | Msa0419720 | 0.811417 | 7.076241e-51 | -8.615850e-47 |
| Msa0116380 | Msa0423750 | 0.825876 | 3.689938e-54 | -8.615850e-47 |
| Msa0116380 | Msa0427580 | 0.805935 | 1.049610e-49 | -8.615850e-47 |
| Msa0116380 | Msa0427860 | -0.801569 | 8.465048e-49 | -8.615850e-47 |
| Msa0116380 | Msa0443390 | 0.810257 | 1.261421e-50 | -8.615850e-47 |
| Msa0116380 | Msa0450400 | -0.827347 | 1.644732e-54 | -8.615850e-47 |
| Msa0116380 | Msa0450930 | 0.809932 | 1.482079e-50 | -8.615850e-47 |
| Msa0116380 | Msa0469620 | -0.813700 | 2.241615e-51 | -8.615850e-47 |
| Msa0116380 | Msa0474090 | -0.801670 | 8.071708e-49 | -8.615850e-47 |
| Msa0116380 | Msa0485240 | 0.821731 | 3.453930e-53 | -8.615850e-47 |
| Msa0116380 | Msa0511770 | 0.815347 | 9.685559e-52 | -8.615850e-47 |
| Msa0116380 | Msa0518170 | 0.830734 | 2.485439e-55 | -8.615850e-47 |
| Msa0116380 | Msa0527540 | 0.804109 | 2.529159e-49 | -8.615850e-47 |
| Msa0116380 | Msa0531650 | 0.802531 | 5.367857e-49 | -8.615850e-47 |
| Msa0116380 | Msa0542290 | 0.816353 | 5.776913e-52 | -8.615850e-47 |
| Msa0116380 | Msa0544840 | 0.807925 | 3.982774e-50 | -8.615850e-47 |
| Msa0116380 | Msa0581110 | 0.819526 | 1.108878e-52 | -8.615850e-47 |
| Msa0116380 | Msa0581280 | 0.820445 | 6.833357e-53 | -8.615850e-47 |
| Msa0116380 | Msa0588260 | 0.813608 | 2.348532e-51 | -8.615850e-47 |
| Msa0116380 | Msa0607690 | 0.817452 | 3.274085e-52 | -8.615850e-47 |
| Msa0116380 | Msa0615580 | 0.803886 | 2.814000e-49 | -8.615850e-47 |
| Msa0116380 | Msa0642970 | 0.838065 | 3.587201e-57 | -8.615850e-47 |
| Msa0116380 | Msa0649220 | 0.800273 | 1.557214e-48 | -8.615850e-47 |
| Msa0116380 | Msa0669520 | 0.811483 | 6.844336e-51 | -8.615850e-47 |
| Msa0116380 | Msa0672100 | 0.800192 | 1.617205e-48 | -8.615850e-47 |
| Msa0116380 | Msa0679360 | 0.800137 | 1.659726e-48 | -8.615850e-47 |
| Msa0116380 | Msa0702720 | 0.802944 | 4.410968e-49 | -8.615850e-47 |
| Msa0116380 | Msa0719990 | 0.811040 | 8.541147e-51 | -8.615850e-47 |
| Msa0116380 | Msa0741440 | 0.809903 | 1.503510e-50 | -8.615850e-47 |
| Msa0116380 | Msa0746210 | 0.801210 | 1.002648e-48 | -8.615850e-47 |
| Msa0116380 | Msa0751010 | 0.810536 | 1.097765e-50 | -8.615850e-47 |
| Msa0116380 | Msa0780930 | 0.805831 | 1.104081e-49 | -8.615850e-47 |
| Msa0116380 | Msa0800370 | 0.862612 | 4.479497e-64 | -8.615850e-47 |
| Msa0116380 | Msa0808800 | 0.802125 | 6.505967e-49 | -8.615850e-47 |
| Msa0116380 | Msa0822310 | -0.813288 | 2.761327e-51 | -8.615850e-47 |
| Msa0116380 | Msa0822500 | 0.815341 | 9.715681e-52 | -8.615850e-47 |
| Msa0116380 | Msa0826150 | 0.832195 | 1.085743e-55 | -8.615850e-47 |
| Msa0116380 | Msa0833190 | -0.820634 | 6.182531e-53 | -8.615850e-47 |
| Msa0116380 | Msa0865030 | 0.841880 | 3.632639e-58 | -8.615850e-47 |
| Msa0116380 | Msa0892640 | 0.847817 | 9.094248e-60 | -8.615850e-47 |
| Msa0116380 | Msa0903780 | 0.807093 | 5.981213e-50 | -8.615850e-47 |
| Msa0116380 | Msa0944200 | 0.800649 | 1.305090e-48 | -8.615850e-47 |
| Msa0116380 | Msa0944610 | 0.808333 | 3.261087e-50 | -8.615850e-47 |
| Msa0116380 | Msa0958000 | 0.827320 | 1.670074e-54 | -8.615850e-47 |
| Msa0116380 | Msa0974950 | 0.821477 | 3.954658e-53 | -8.615850e-47 |
| Msa0116380 | Msa1030080 | 0.819525 | 1.109486e-52 | -8.615850e-47 |
| Msa0116380 | Msa1036800 | 0.800987 | 1.113606e-48 | -8.615850e-47 |
| Msa0116380 | Msa1059300 | 0.822146 | 2.769185e-53 | -8.615850e-47 |
| Msa0116380 | Msa1059470 | 0.822609 | 2.161320e-53 | -8.615850e-47 |
| Msa0116380 | Msa1072900 | 0.811785 | 5.883079e-51 | -8.615850e-47 |
| Msa0116380 | Msa1089320 | 0.801600 | 8.340137e-49 | -8.615850e-47 |
| Msa0116380 | Msa1089450 | 0.842033 | 3.310904e-58 | -8.615850e-47 |
| Msa0116380 | Msa1122310 | -0.818826 | 1.600629e-52 | -8.615850e-47 |
| Msa0116380 | Msa1126830 | 0.819900 | 9.108548e-53 | -8.615850e-47 |
| Msa0116380 | Msa1128270 | 0.825093 | 5.656592e-54 | -8.615850e-47 |
| Msa0116380 | Msa1128280 | 0.840706 | 7.396417e-58 | -8.615850e-47 |
| Msa0116380 | Msa1165270 | 0.848510 | 5.854223e-60 | -8.615850e-47 |
| Msa0116380 | Msa1165780 | 0.857098 | 2.056624e-62 | -8.615850e-47 |
| Msa0116380 | Msa1175200 | 0.814165 | 1.770528e-51 | -8.615850e-47 |
| Msa0116380 | Msa1175350 | 0.808063 | 3.723673e-50 | -8.615850e-47 |
| Msa0116380 | Msa1254730 | 0.811116 | 8.224011e-51 | -8.615850e-47 |
| Msa0116380 | Msa1258110 | 0.801021 | 1.096095e-48 | -8.615850e-47 |
| Msa0116380 | Msa1262890 | 0.843417 | 1.419612e-58 | -8.615850e-47 |
| Msa0116380 | Msa1264210 | 0.819546 | 1.097201e-52 | -8.615850e-47 |
| Msa0116380 | Msa1271130 | 0.802631 | 5.120149e-49 | -8.615850e-47 |
| Msa0116380 | Msa1275110 | 0.814263 | 1.684025e-51 | -8.615850e-47 |
| Msa0116380 | Msa1307180 | 0.830696 | 2.538981e-55 | -8.615850e-47 |
| Msa0116380 | Msa1315890 | 0.814597 | 1.421037e-51 | -8.615850e-47 |
| Msa0116380 | Msa1316360 | 0.835723 | 1.421508e-56 | -8.615850e-47 |
| Msa0116380 | Msa1336560 | 0.861909 | 7.362693e-64 | -8.615850e-47 |
| Msa0116380 | Msa1341060 | 0.842410 | 2.629693e-58 | -8.615850e-47 |
| Msa0116380 | Msa1351540 | 0.868992 | 4.321415e-66 | -8.615850e-47 |
| Msa0116380 | Msa1360980 | 0.807120 | 5.901702e-50 | -8.615850e-47 |
| Msa0116380 | Msa1364210 | 0.802625 | 5.132415e-49 | -8.615850e-47 |
| Msa0116380 | Msa1395730 | 0.823944 | 1.054213e-53 | -8.615850e-47 |
| Msa0116380 | Msa1407190 | 0.809242 | 2.084213e-50 | -8.615850e-47 |
| Msa0116380 | Msa1418240 | 0.808852 | 2.526182e-50 | -8.615850e-47 |
| Msa0116380 | Msa1454450 | 0.801664 | 8.093887e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116380 | MtrunA17_Chr1g0193001 | 98.907 | 183 | 2 | 0 | 1 | 183 | 1 | 183 | 1.39e-131 | 366 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116380 | AT1G09330.1 | 83.333 | 186 | 28 | 1 | 1 | 183 | 1 | 186 | 8.04e-113 | 319 |
| Msa0116380 | AT1G09330.2 | 86.957 | 115 | 12 | 1 | 1 | 112 | 1 | 115 | 2.21e-69 | 207 |
Find 52 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGCCATTTCTCATAAA+AGG | 0.194752 | 1_3:+35335642 | None:intergenic |
| TCGCAAATCTAACAAACTTT+TGG | 0.230443 | 1_3:-35338420 | Msa0116380:five_prime_UTR |
| TTTGGTAAAACCAACGATAT+TGG | 0.281162 | 1_3:+35336848 | None:intergenic |
| AACGTTGAATTTACCTGGTT+GGG | 0.320527 | 1_3:+35338276 | None:intergenic |
| GCTGATTATCTCCTTGTTGT+AGG | 0.355434 | 1_3:-35336894 | Msa0116380:CDS |
| ATGATCTTGGTGAGAGTGTT+TGG | 0.360765 | 1_3:-35337822 | Msa0116380:CDS |
| GTTAGATTTGCGAGTAAGAT+TGG | 0.376947 | 1_3:+35338430 | None:intergenic |
| ATTCTCCCTCATAAGGCTTC+AGG | 0.382513 | 1_3:-35336916 | Msa0116380:CDS |
| AGTAACTATGCAAGTTTGAT+AGG | 0.391251 | 1_3:+35335690 | None:intergenic |
| TTCTCTTACCGCAAGGTAAA+GGG | 0.399828 | 1_3:+35337317 | None:intergenic |
| AATCAGCCTGAAGCCTTATG+AGG | 0.430875 | 1_3:+35336910 | None:intergenic |
| TGGCAATATTCTCCCTCATA+AGG | 0.431645 | 1_3:-35336923 | Msa0116380:CDS |
| ATTCTCTTACCGCAAGGTAA+AGG | 0.432253 | 1_3:+35337316 | None:intergenic |
| ATGTTGCTTGAACGGACAAA+AGG | 0.436032 | 1_3:+35338462 | None:intergenic |
| TGCAAGTTTGATAGGTAGTC+AGG | 0.436157 | 1_3:+35335698 | None:intergenic |
| TCTCAGCAAGGTGTAAAATC+TGG | 0.437505 | 1_3:-35338365 | Msa0116380:five_prime_UTR |
| TACTTTCTATGTTGCTTGAA+CGG | 0.438991 | 1_3:+35338454 | None:intergenic |
| AACACTAAATGCTGACTGTA+AGG | 0.448188 | 1_3:+35335829 | None:intergenic |
| TTTCACTGCAGTCATTGGCT+AGG | 0.465921 | 1_3:-35337374 | Msa0116380:intron |
| AAACGTTGAATTTACCTGGT+TGG | 0.477789 | 1_3:+35338275 | None:intergenic |
| CTCAGCATTGCCAATATCGT+TGG | 0.478560 | 1_3:-35336858 | Msa0116380:CDS |
| CCTCTCAGACAATTGCCTCT+CGG | 0.479391 | 1_3:-35335862 | Msa0116380:CDS |
| GGATGAACAAGAAAGATTCA+TGG | 0.490476 | 1_3:-35337353 | Msa0116380:CDS |
| ACATGAAAGAAACAAGTCCT+TGG | 0.501598 | 1_3:+35338124 | None:intergenic |
| TGGAATGAAATTGATGATCT+TGG | 0.506140 | 1_3:-35337835 | Msa0116380:CDS |
| AAAGAAACAAGTCCTTGGAT+TGG | 0.508177 | 1_3:+35338129 | None:intergenic |
| CTCTCTCCGAAGCTCACACA+TGG | 0.509449 | 1_3:-35338301 | Msa0116380:exon |
| TGGGATCCATGTGTGAGCTT+CGG | 0.532337 | 1_3:+35338295 | None:intergenic |
| TCTAATAATGCAGTAATGCA+TGG | 0.537001 | 1_3:+35335783 | None:intergenic |
| GAAATATTGAGATGCGGTGG+AGG | 0.544061 | 1_3:-35335762 | Msa0116380:three_prime_UTR |
| TGTTGCTTGAACGGACAAAA+GGG | 0.551010 | 1_3:+35338463 | None:intergenic |
| GAATACTTACATCTTGATCA+AGG | 0.554101 | 1_3:+35337788 | None:intergenic |
| AACGATATTGGCAATGCTGA+GGG | 0.574974 | 1_3:+35336860 | None:intergenic |
| TGGGTGGTTAAGAATGTCAG+TGG | 0.584529 | 1_3:-35337883 | Msa0116380:CDS |
| TGTGTGAGCTTCGGAGAGAG+AGG | 0.591162 | 1_3:+35338304 | None:intergenic |
| CTCACACATGGATCCCAACC+AGG | 0.591438 | 1_3:-35338289 | Msa0116380:intron |
| AATAAGCAGGTAACCACTCG+TGG | 0.598050 | 1_3:+35335517 | None:intergenic |
| CAACGATATTGGCAATGCTG+AGG | 0.602070 | 1_3:+35336859 | None:intergenic |
| AAATTATGCAAAATAATACA+AGG | 0.604454 | 1_3:+35335556 | None:intergenic |
| GTCAGGATCCAGTCTGATGT+CGG | 0.604742 | 1_3:+35335715 | None:intergenic |
| TTAGAAATATTGAGATGCGG+TGG | 0.604902 | 1_3:-35335765 | Msa0116380:three_prime_UTR |
| ATCAGCCTGAAGCCTTATGA+GGG | 0.607448 | 1_3:+35336911 | None:intergenic |
| GTGTGAGCTTCGGAGAGAGA+GGG | 0.618779 | 1_3:+35338305 | None:intergenic |
| CCGAGAGGCAATTGTCTGAG+AGG | 0.623720 | 1_3:+35335862 | None:intergenic |
| TTGAAAACTACTCCAATCCA+AGG | 0.632706 | 1_3:-35338141 | Msa0116380:CDS |
| CTGGTGGACCCTTTACCTTG+CGG | 0.632785 | 1_3:-35337325 | Msa0116380:intron |
| AAAGATCTATGTTCCACGAG+TGG | 0.652955 | 1_3:-35335530 | Msa0116380:three_prime_UTR |
| TTATTAGAAATATTGAGATG+CGG | 0.670186 | 1_3:-35335768 | Msa0116380:three_prime_UTR |
| TTGTGATGAATCAAAGACGA+TGG | 0.690899 | 1_3:+35338336 | None:intergenic |
| AATTGTTTAGAAGAAATACA+CGG | 0.703403 | 1_3:+35338502 | None:intergenic |
| TCAAACAAACTCCTACAACA+AGG | 0.714274 | 1_3:+35336883 | None:intergenic |
| TAAGGTAGATGAAAACCGAG+AGG | 0.750436 | 1_3:+35335847 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATAATTGTTTATTTTC+AGG | - | chr1_3:35338410-35338429 | Msa0116380:five_prime_UTR | 10.0% |
| !!! | GTAATATGTTTTTTGAAATA+AGG | - | chr1_3:35336264-35336283 | Msa0116380:intron | 15.0% |
| !! | ATAAAATTTATCACTTTAGT+TGG | + | chr1_3:35336881-35336900 | None:intergenic | 15.0% |
| !! | AAATTATGCAAAATAATACA+AGG | + | chr1_3:35338451-35338470 | None:intergenic | 15.0% |
| !! | AATTGTTTAGAAGAAATACA+CGG | + | chr1_3:35335505-35335524 | None:intergenic | 20.0% |
| !!! | TAACTTTGTTATCATTTTTG+TGG | - | chr1_3:35336069-35336088 | Msa0116380:intron | 20.0% |
| !!! | AAGTATTCTTTGTTTTGATT+AGG | - | chr1_3:35336231-35336250 | Msa0116380:intron | 20.0% |
| !!! | TTTTATTTATGCTTTGTATC+TGG | - | chr1_3:35336895-35336914 | Msa0116380:CDS | 20.0% |
| !!! | TTTTATTTGTATTGTTCTAC+AGG | - | chr1_3:35337040-35337059 | Msa0116380:intron | 20.0% |
| !! | TCAAAATGAAAAAAAGAAAC+AGG | + | chr1_3:35337375-35337394 | None:intergenic | 20.0% |
| !! | TGAAAATTCTAACTATAGTT+TGG | - | chr1_3:35337400-35337419 | Msa0116380:intron | 20.0% |
| !! | TACAATCATAAATTTCCATT+TGG | + | chr1_3:35337489-35337508 | None:intergenic | 20.0% |
| !! | ATTGAAAGATGTTATTGTTA+CGG | - | chr1_3:35337751-35337770 | Msa0116380:intron | 20.0% |
| !! | TAATTAATACAACAAATTGC+TGG | - | chr1_3:35338081-35338100 | Msa0116380:intron | 20.0% |
| !! | TTATTAGAAATATTGAGATG+CGG | - | chr1_3:35338236-35338255 | Msa0116380:intron | 20.0% |
| !! | TTTCTTTCATGTTCTTTTCA+AGG | - | chr1_3:35335891-35335910 | Msa0116380:CDS | 25.0% |
| !! | TGTTGTATTTTGTATTTTGC+AGG | - | chr1_3:35336003-35336022 | Msa0116380:intron | 25.0% |
| !! | TTTGGCATTTTACATTCTAT+CGG | - | chr1_3:35336033-35336052 | Msa0116380:intron | 25.0% |
| !!! | TTTGTTTTGATTAGGTTTCA+GGG | - | chr1_3:35336239-35336258 | Msa0116380:intron | 25.0% |
| ! | ATTAAGTAGTTTATCCAAAC+AGG | + | chr1_3:35336290-35336309 | None:intergenic | 25.0% |
| ! | TTGAAATAAGCTAATCCAAA+TGG | - | chr1_3:35336509-35336528 | Msa0116380:intron | 25.0% |
| ! | TGAAATAAGCTAATCCAAAT+GGG | - | chr1_3:35336510-35336529 | Msa0116380:intron | 25.0% |
| !!! | ATTTTGACTATAACACCATA+AGG | + | chr1_3:35336761-35336780 | None:intergenic | 25.0% |
| !! | AATTTTGCTCTTTTTATGGT+AGG | + | chr1_3:35336983-35337002 | None:intergenic | 25.0% |
| !! | CTTCTTTTATATTGCAGAAT+TGG | - | chr1_3:35337227-35337246 | Msa0116380:intron | 25.0% |
| !! | TTATATTGCAGAATTGGTTT+AGG | - | chr1_3:35337233-35337252 | Msa0116380:intron | 25.0% |
| ! | ATTTGTAATTTCCTAAGGAT+GGG | - | chr1_3:35337548-35337567 | Msa0116380:intron | 25.0% |
| ! | ATAACATCTTTCAATTTCCT+GGG | + | chr1_3:35337746-35337765 | None:intergenic | 25.0% |
| ! | AATAACATCTTTCAATTTCC+TGG | + | chr1_3:35337747-35337766 | None:intergenic | 25.0% |
| ! | AATTTATAGTACCCTGTTTA+TGG | - | chr1_3:35337824-35337843 | Msa0116380:CDS | 25.0% |
| ! | ATTTATAGTACCCTGTTTAT+GGG | - | chr1_3:35337825-35337844 | Msa0116380:CDS | 25.0% |
| ! | AAAACACAAATGAAAACAAG+AGG | + | chr1_3:35337867-35337886 | None:intergenic | 25.0% |
| !! | TTTGTACCTTTTATGAGAAA+TGG | - | chr1_3:35338356-35338375 | Msa0116380:five_prime_UTR | 25.0% |
| !! | AATTTTGCATGAAAATAAGC+AGG | + | chr1_3:35338503-35338522 | None:intergenic | 25.0% |
| !!! | TGCTTATTTTCATGCAAAAT+TGG | - | chr1_3:35338502-35338521 | Msa0116380:five_prime_UTR | 25.0% |
| ! | TACTTTCTATGTTGCTTGAA+CGG | + | chr1_3:35335553-35335572 | None:intergenic | 30.0% |
| ! | TCGCAAATCTAACAAACTTT+TGG | - | chr1_3:35335584-35335603 | Msa0116380:three_prime_UTR | 30.0% |
| AAGAAAACGTTGAATTTACC+TGG | + | chr1_3:35335736-35335755 | None:intergenic | 30.0% | |
| ATTGAAACCAGATCTAAGAA+TGG | + | chr1_3:35335762-35335781 | None:intergenic | 30.0% | |
| ! | ATTCTTAGATCTGGTTTCAA+TGG | - | chr1_3:35335761-35335780 | Msa0116380:three_prime_UTR | 30.0% |
| !!! | GAATTTTAGTTGGAATGAGA+TGG | - | chr1_3:35336146-35336165 | Msa0116380:intron | 30.0% |
| ! | TGGAATGAAATTGATGATCT+TGG | - | chr1_3:35336169-35336188 | Msa0116380:intron | 30.0% |
| GAATACTTACATCTTGATCA+AGG | + | chr1_3:35336219-35336238 | None:intergenic | 30.0% | |
| !!! | CTTTGTTTTGATTAGGTTTC+AGG | - | chr1_3:35336238-35336257 | Msa0116380:intron | 30.0% |
| !!! | TTGTTTTGATTAGGTTTCAG+GGG | - | chr1_3:35336240-35336259 | Msa0116380:intron | 30.0% |
| !!! | TTTTTGAAATAAGGCCTGTT+TGG | - | chr1_3:35336273-35336292 | Msa0116380:intron | 30.0% |
| !!! | TTTTTTTTCACTGCAGTCAT+TGG | - | chr1_3:35336625-35336644 | Msa0116380:intron | 30.0% |
| !! | ATGGTGTTATAGTCAAAATG+TGG | - | chr1_3:35336762-35336781 | Msa0116380:intron | 30.0% |
| ACTTTCTGAATAAGTCTGAT+CGG | + | chr1_3:35336822-35336841 | None:intergenic | 30.0% | |
| GTTTAGTACTAAATAAGCTG+CGG | - | chr1_3:35336851-35336870 | Msa0116380:CDS | 30.0% | |
| ATTTATGCTTTGTATCTGGA+TGG | - | chr1_3:35336899-35336918 | Msa0116380:CDS | 30.0% | |
| ! | GCACAATTTTGCTCTTTTTA+TGG | + | chr1_3:35336987-35337006 | None:intergenic | 30.0% |
| ! | AAATTGTGCTTTCTGGTATT+TGG | - | chr1_3:35336998-35337017 | Msa0116380:intron | 30.0% |
| TTTGGTAAAACCAACGATAT+TGG | + | chr1_3:35337159-35337178 | None:intergenic | 30.0% | |
| ! | GGTTTTACCAAATGCAAAAA+AGG | - | chr1_3:35337167-35337186 | Msa0116380:intron | 30.0% |
| !!! | TTACACACCTTTTTTGCATT+TGG | + | chr1_3:35337177-35337196 | None:intergenic | 30.0% |
| TACTAAATGCATGTACCAAA+TGG | - | chr1_3:35337471-35337490 | Msa0116380:intron | 30.0% | |
| TAGTCATGTTAAGGTGTAAT+TGG | + | chr1_3:35337516-35337535 | None:intergenic | 30.0% | |
| ACACCTTAACATGACTAATT+TGG | - | chr1_3:35337519-35337538 | Msa0116380:intron | 30.0% | |
| TGACCAAATTAGTCATGTTA+AGG | + | chr1_3:35337525-35337544 | None:intergenic | 30.0% | |
| !! | CACTGATTTGTAATTTCCTA+AGG | - | chr1_3:35337543-35337562 | Msa0116380:intron | 30.0% |
| GATTTGTAATTTCCTAAGGA+TGG | - | chr1_3:35337547-35337566 | Msa0116380:intron | 30.0% | |
| GAGATAATCACCAAACTAAA+TGG | + | chr1_3:35337690-35337709 | None:intergenic | 30.0% | |
| ! | TTTGGTGATTATCTCTTGAA+AGG | - | chr1_3:35337695-35337714 | Msa0116380:intron | 30.0% |
| TTTATAGTACCCTGTTTATG+GGG | - | chr1_3:35337826-35337845 | Msa0116380:CDS | 30.0% | |
| TGAAAATGTGATGTGAATCT+AGG | + | chr1_3:35337945-35337964 | None:intergenic | 30.0% | |
| AAACAATAAACCAATGTGAG+GGG | + | chr1_3:35338029-35338048 | None:intergenic | 30.0% | |
| GAAACAATAAACCAATGTGA+GGG | + | chr1_3:35338030-35338049 | None:intergenic | 30.0% | |
| TGAAACAATAAACCAATGTG+AGG | + | chr1_3:35338031-35338050 | None:intergenic | 30.0% | |
| TCTAATAATGCAGTAATGCA+TGG | + | chr1_3:35338224-35338243 | None:intergenic | 30.0% | |
| AGTAACTATGCAAGTTTGAT+AGG | + | chr1_3:35338317-35338336 | None:intergenic | 30.0% | |
| TTCAAGCCATTTCTCATAAA+AGG | + | chr1_3:35338365-35338384 | None:intergenic | 30.0% | |
| GTTAGATTTGCGAGTAAGAT+TGG | + | chr1_3:35335577-35335596 | None:intergenic | 35.0% | |
| TTGTGATGAATCAAAGACGA+TGG | + | chr1_3:35335671-35335690 | None:intergenic | 35.0% | |
| AACGTTGAATTTACCTGGTT+GGG | + | chr1_3:35335731-35335750 | None:intergenic | 35.0% | |
| AAACGTTGAATTTACCTGGT+TGG | + | chr1_3:35335732-35335751 | None:intergenic | 35.0% | |
| TCTTCAACCATTCTTAGATC+TGG | - | chr1_3:35335752-35335771 | Msa0116380:three_prime_UTR | 35.0% | |
| TTGAAAACTACTCCAATCCA+AGG | - | chr1_3:35335863-35335882 | Msa0116380:CDS | 35.0% | |
| AAAGAAACAAGTCCTTGGAT+TGG | + | chr1_3:35335878-35335897 | None:intergenic | 35.0% | |
| ACATGAAAGAAACAAGTCCT+TGG | + | chr1_3:35335883-35335902 | None:intergenic | 35.0% | |
| ! | ATTTTGTATTTTGCAGGCTG+CGG | - | chr1_3:35336009-35336028 | Msa0116380:intron | 35.0% |
| ! | TTCTTGCTGCTCTTGATTTT+TGG | - | chr1_3:35336101-35336120 | Msa0116380:intron | 35.0% |
| ! | TCTTGCTGCTCTTGATTTTT+GGG | - | chr1_3:35336102-35336121 | Msa0116380:intron | 35.0% |
| !! | GTCAGTGGAAGAATTTTAGT+TGG | - | chr1_3:35336136-35336155 | Msa0116380:intron | 35.0% |
| !! | TTTTAGTTGGAATGAGATGG+TGG | - | chr1_3:35336149-35336168 | Msa0116380:intron | 35.0% |
| GAGTAGCTGAAAACAACTAA+TGG | - | chr1_3:35336420-35336439 | Msa0116380:intron | 35.0% | |
| AAGCAATTGTGATACTGCTT+GGG | + | chr1_3:35336475-35336494 | None:intergenic | 35.0% | |
| AAAGCAATTGTGATACTGCT+TGG | + | chr1_3:35336476-35336495 | None:intergenic | 35.0% | |
| AACCTGACTAGCATAAGAAT+GGG | - | chr1_3:35336567-35336586 | Msa0116380:intron | 35.0% | |
| GGATGAACAAGAAAGATTCA+TGG | - | chr1_3:35336651-35336670 | Msa0116380:intron | 35.0% | |
| ! | AGAAAGATTCATGGCTTTTC+TGG | - | chr1_3:35336660-35336679 | Msa0116380:intron | 35.0% |
| CTATATATTCTCTTACCGCA+AGG | + | chr1_3:35336697-35336716 | None:intergenic | 35.0% | |
| TAGTCAAAATGTGGTTGTTC+TGG | - | chr1_3:35336771-35336790 | Msa0116380:intron | 35.0% | |
| CTTTCTGAATAAGTCTGATC+GGG | + | chr1_3:35336821-35336840 | None:intergenic | 35.0% | |
| AAGAGCAAAATTGTGCTTTC+TGG | - | chr1_3:35336991-35337010 | Msa0116380:intron | 35.0% | |
| TCAAACAAACTCCTACAACA+AGG | + | chr1_3:35337124-35337143 | None:intergenic | 35.0% | |
| AATATATCAAGCCCATCCTT+AGG | + | chr1_3:35337562-35337581 | None:intergenic | 35.0% | |
| ! | AAGGATGGGCTTGATATATT+TGG | - | chr1_3:35337562-35337581 | Msa0116380:intron | 35.0% |
| ATCACCAAACTAAATGGTTG+TGG | + | chr1_3:35337684-35337703 | None:intergenic | 35.0% | |
| ! | ATCTCTTGAAAGGCATAAGT+AGG | - | chr1_3:35337705-35337724 | Msa0116380:intron | 35.0% |
| ! | GGCATTCATTTTATATTCCC+AGG | - | chr1_3:35337726-35337745 | Msa0116380:intron | 35.0% |
| !!! | TTACGGCCATTGTTTTAGTT+GGG | - | chr1_3:35337768-35337787 | Msa0116380:intron | 35.0% |
| TAATCGCCCAACTAAAACAA+TGG | + | chr1_3:35337777-35337796 | None:intergenic | 35.0% | |
| ! | ATCTCTTGAAAGGCATAAGT+AGG | - | chr1_3:35337705-35337724 | Msa0116380:intron | 35.0% |
| TATGAAAACATTCTTGCCGT+AGG | - | chr1_3:35337907-35337926 | Msa0116380:CDS | 35.0% | |
| AGAAATCCTTCATATTGGGA+GGG | + | chr1_3:35338004-35338023 | None:intergenic | 35.0% | |
| AACAATAAACCAATGTGAGG+GGG | + | chr1_3:35338028-35338047 | None:intergenic | 35.0% | |
| ! | AACACTAAATGCTGACTGTA+AGG | + | chr1_3:35338178-35338197 | None:intergenic | 35.0% |
| TTAGAAATATTGAGATGCGG+TGG | - | chr1_3:35338239-35338258 | Msa0116380:intron | 35.0% | |
| ! | TGTTGCTTGAACGGACAAAA+GGG | + | chr1_3:35335544-35335563 | None:intergenic | 40.0% |
| ! | ATGTTGCTTGAACGGACAAA+AGG | + | chr1_3:35335545-35335564 | None:intergenic | 40.0% |
| CGATCTGAAAAATCTCAGCA+AGG | - | chr1_3:35335627-35335646 | Msa0116380:three_prime_UTR | 40.0% | |
| TCTCAGCAAGGTGTAAAATC+TGG | - | chr1_3:35335639-35335658 | Msa0116380:three_prime_UTR | 40.0% | |
| !! | ATGATCTTGGTGAGAGTGTT+TGG | - | chr1_3:35336182-35336201 | Msa0116380:intron | 40.0% |
| !! | ATACTGCTTGGGAGTGTTTA+TGG | + | chr1_3:35336464-35336483 | None:intergenic | 40.0% |
| ATAAGCTAATCCAAATGGGC+CGG | - | chr1_3:35336514-35336533 | Msa0116380:intron | 40.0% | |
| GAACCTGACTAGCATAAGAA+TGG | - | chr1_3:35336566-35336585 | Msa0116380:intron | 40.0% | |
| ACCTGACTAGCATAAGAATG+GGG | - | chr1_3:35336568-35336587 | Msa0116380:intron | 40.0% | |
| ! | AAGATTCATGGCTTTTCTGG+TGG | - | chr1_3:35336663-35336682 | Msa0116380:intron | 40.0% |
| TTCTCTTACCGCAAGGTAAA+GGG | + | chr1_3:35336690-35336709 | None:intergenic | 40.0% | |
| ATTCTCTTACCGCAAGGTAA+AGG | + | chr1_3:35336691-35336710 | None:intergenic | 40.0% | |
| !! | GTGATAGTTCACTTTTGCCT+AGG | - | chr1_3:35336734-35336753 | Msa0116380:intron | 40.0% |
| CTATAACACCATAAGGACCT+AGG | + | chr1_3:35336754-35336773 | None:intergenic | 40.0% | |
| !! | TAGCTTTGTCAATCATCACG+CGG | - | chr1_3:35336926-35336945 | Msa0116380:CDS | 40.0% |
| ! | TTGTTCTACAGGCAGTTTTG+TGG | - | chr1_3:35337051-35337070 | Msa0116380:intron | 40.0% |
| !! | GGCAGTTTTGTGGATTATGT+TGG | - | chr1_3:35337061-35337080 | Msa0116380:intron | 40.0% |
| TGGCAATATTCTCCCTCATA+AGG | - | chr1_3:35337081-35337100 | Msa0116380:intron | 40.0% | |
| ! | GCTGATTATCTCCTTGTTGT+AGG | - | chr1_3:35337110-35337129 | Msa0116380:intron | 40.0% |
| AACGATATTGGCAATGCTGA+GGG | + | chr1_3:35337147-35337166 | None:intergenic | 40.0% | |
| !! | GCAGAATTGGTTTAGGTTGA+TGG | - | chr1_3:35337240-35337259 | Msa0116380:intron | 40.0% |
| TCAGCAACTTTACACGAAGT+GGG | + | chr1_3:35337435-35337454 | None:intergenic | 40.0% | |
| GGTACATGCATTTAGTAGTC+AGG | + | chr1_3:35337468-35337487 | None:intergenic | 40.0% | |
| CTGCATTCTTGTATCTGTGA+CGG | - | chr1_3:35337655-35337674 | Msa0116380:intron | 40.0% | |
| TGCATTCTTGTATCTGTGAC+GGG | - | chr1_3:35337656-35337675 | Msa0116380:intron | 40.0% | |
| GGATCCACAACCATTTAGTT+TGG | - | chr1_3:35337677-35337696 | Msa0116380:intron | 40.0% | |
| !!! | GTTACGGCCATTGTTTTAGT+TGG | - | chr1_3:35337767-35337786 | Msa0116380:intron | 40.0% |
| TTGGGCGATTATCTCTTGAA+AGG | - | chr1_3:35337786-35337805 | Msa0116380:intron | 40.0% | |
| TTTATGGGGTTGGGAACTTT+GGG | - | chr1_3:35337840-35337859 | Msa0116380:CDS | 40.0% | |
| TAGGCTTAGAGAAACTCCTA+CGG | + | chr1_3:35337926-35337945 | None:intergenic | 40.0% | |
| CAGAAATCCTTCATATTGGG+AGG | + | chr1_3:35338005-35338024 | None:intergenic | 40.0% | |
| GGGCAGAAATCCTTCATATT+GGG | + | chr1_3:35338008-35338027 | None:intergenic | 40.0% | |
| TAAGGTAGATGAAAACCGAG+AGG | + | chr1_3:35338160-35338179 | None:intergenic | 40.0% | |
| !! | TTATTTTGCCGACATCAGAC+TGG | - | chr1_3:35338281-35338300 | Msa0116380:intron | 40.0% |
| TGCAAGTTTGATAGGTAGTC+AGG | + | chr1_3:35338309-35338328 | None:intergenic | 40.0% | |
| AAAGATCTATGTTCCACGAG+TGG | - | chr1_3:35338474-35338493 | Msa0116380:five_prime_UTR | 40.0% | |
| CAACTACAGTCTGCACACAA+AGG | + | chr1_3:35335846-35335865 | None:intergenic | 45.0% | |
| !! | TGCTGCTCTTGATTTTTGGG+TGG | - | chr1_3:35336105-35336124 | Msa0116380:intron | 45.0% |
| TGGGTGGTTAAGAATGTCAG+TGG | - | chr1_3:35336121-35336140 | Msa0116380:intron | 45.0% | |
| ! | AAAAGTGGCGGAGATATCAC+CGG | + | chr1_3:35336536-35336555 | None:intergenic | 45.0% |
| TCAGCAGAGTTGAAAAGTGG+CGG | + | chr1_3:35336548-35336567 | None:intergenic | 45.0% | |
| GGTTCAGCAGAGTTGAAAAG+TGG | + | chr1_3:35336551-35336570 | None:intergenic | 45.0% | |
| ACCCCATTCTTATGCTAGTC+AGG | + | chr1_3:35336572-35336591 | None:intergenic | 45.0% | |
| ! | TTTCACTGCAGTCATTGGCT+AGG | - | chr1_3:35336630-35336649 | Msa0116380:intron | 45.0% |
| ! | CACTTTTGCCTAGGTCCTTA+TGG | - | chr1_3:35336743-35336762 | Msa0116380:intron | 45.0% |
| ! | AGCTTTGTCAATCATCACGC+GGG | - | chr1_3:35336927-35336946 | Msa0116380:CDS | 45.0% |
| ATTCTCCCTCATAAGGCTTC+AGG | - | chr1_3:35337088-35337107 | Msa0116380:intron | 45.0% | |
| ! | ATCAGCCTGAAGCCTTATGA+GGG | + | chr1_3:35337096-35337115 | None:intergenic | 45.0% |
| ! | AATCAGCCTGAAGCCTTATG+AGG | + | chr1_3:35337097-35337116 | None:intergenic | 45.0% |
| CAACGATATTGGCAATGCTG+AGG | + | chr1_3:35337148-35337167 | None:intergenic | 45.0% | |
| CTCAGCATTGCCAATATCGT+TGG | - | chr1_3:35337146-35337165 | Msa0116380:intron | 45.0% | |
| GTCAGCAACTTTACACGAAG+TGG | + | chr1_3:35337436-35337455 | None:intergenic | 45.0% | |
| TAGTACCCTGTTTATGGGGT+TGG | - | chr1_3:35337830-35337849 | Msa0116380:CDS | 45.0% | |
| AGTACCCTGTTTATGGGGTT+GGG | - | chr1_3:35337831-35337850 | Msa0116380:CDS | 45.0% | |
| AGTTCCCAACCCCATAAACA+GGG | + | chr1_3:35337838-35337857 | None:intergenic | 45.0% | |
| AAGTTCCCAACCCCATAAAC+AGG | + | chr1_3:35337839-35337858 | None:intergenic | 45.0% | |
| GTTTATGGGGTTGGGAACTT+TGG | - | chr1_3:35337839-35337858 | Msa0116380:CDS | 45.0% | |
| TCCTTCATATTGGGAGGGAA+GGG | + | chr1_3:35337999-35338018 | None:intergenic | 45.0% | |
| ATCCTTCATATTGGGAGGGA+AGG | + | chr1_3:35338000-35338019 | None:intergenic | 45.0% | |
| GGGGCAGAAATCCTTCATAT+TGG | + | chr1_3:35338009-35338028 | None:intergenic | 45.0% | |
| GAAATATTGAGATGCGGTGG+AGG | - | chr1_3:35338242-35338261 | Msa0116380:intron | 45.0% | |
| AATAAGCAGGTAACCACTCG+TGG | + | chr1_3:35338490-35338509 | None:intergenic | 45.0% | |
| !! | AAACAATTAAAAAAAAAAAA+AGG | - | chr1_3:35335517-35335536 | Msa0116380:three_prime_UTR | 5.0% |
| TGGGATCCATGTGTGAGCTT+CGG | + | chr1_3:35335712-35335731 | None:intergenic | 50.0% | |
| ! | TATTTTGCAGGCTGCGGCTT+TGG | - | chr1_3:35336015-35336034 | Msa0116380:intron | 50.0% |
| GCTTTGTCAATCATCACGCG+GGG | - | chr1_3:35336928-35336947 | Msa0116380:CDS | 50.0% | |
| CCTTCATATTGGGAGGGAAG+GGG | + | chr1_3:35337998-35338017 | None:intergenic | 50.0% | |
| CCTCTCAGACAATTGCCTCT+CGG | - | chr1_3:35338142-35338161 | Msa0116380:CDS | 50.0% | |
| GTCAGGATCCAGTCTGATGT+CGG | + | chr1_3:35338292-35338311 | None:intergenic | 50.0% | |
| GTGTGAGCTTCGGAGAGAGA+GGG | + | chr1_3:35335702-35335721 | None:intergenic | 55.0% | |
| TGTGTGAGCTTCGGAGAGAG+AGG | + | chr1_3:35335703-35335722 | None:intergenic | 55.0% | |
| CTCTCTCCGAAGCTCACACA+TGG | - | chr1_3:35335703-35335722 | Msa0116380:three_prime_UTR | 55.0% | |
| CTCACACATGGATCCCAACC+AGG | - | chr1_3:35335715-35335734 | Msa0116380:three_prime_UTR | 55.0% | |
| GGAGATATCACCGGCCCATT+TGG | + | chr1_3:35336527-35336546 | None:intergenic | 55.0% | |
| ! | CTGGTGGACCCTTTACCTTG+CGG | - | chr1_3:35336679-35336698 | Msa0116380:intron | 55.0% |
| CCCCTTCCCTCCCAATATGA+AGG | - | chr1_3:35337995-35338014 | Msa0116380:intron | 55.0% | |
| GGATTTCTGCCCCCTCACAT+TGG | - | chr1_3:35338016-35338035 | Msa0116380:intron | 55.0% | |
| CCGAGAGGCAATTGTCTGAG+AGG | + | chr1_3:35338145-35338164 | None:intergenic | 55.0% | |
| TTGGGAGGGAAGGGGAGACA+GGG | + | chr1_3:35337990-35338009 | None:intergenic | 60.0% | |
| ATTGGGAGGGAAGGGGAGAC+AGG | + | chr1_3:35337991-35338010 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 35335501 | 35338525 | 35335501 | ID=Msa0116380;Name=Msa0116380 |
| chr1_3 | mRNA | 35335501 | 35338525 | 35335501 | ID=Msa0116380-mRNA-1;Parent=Msa0116380;Name=Msa0116380-mRNA-1;_AED=0.03;_eAED=0.03;_QI=221|1|1|1|1|1|6|322|183 |
| chr1_3 | exon | 35335501 | 35335911 | 35335501 | ID=Msa0116380-mRNA-1:exon:11303;Parent=Msa0116380-mRNA-1 |
| chr1_3 | exon | 35336838 | 35336964 | 35336838 | ID=Msa0116380-mRNA-1:exon:11302;Parent=Msa0116380-mRNA-1 |
| chr1_3 | exon | 35337326 | 35337385 | 35337326 | ID=Msa0116380-mRNA-1:exon:11301;Parent=Msa0116380-mRNA-1 |
| chr1_3 | exon | 35337798 | 35338001 | 35337798 | ID=Msa0116380-mRNA-1:exon:11300;Parent=Msa0116380-mRNA-1 |
| chr1_3 | exon | 35338114 | 35338170 | 35338114 | ID=Msa0116380-mRNA-1:exon:11299;Parent=Msa0116380-mRNA-1 |
| chr1_3 | exon | 35338290 | 35338525 | 35338290 | ID=Msa0116380-mRNA-1:exon:11298;Parent=Msa0116380-mRNA-1 |
| chr1_3 | five_prime_UTR | 35338305 | 35338525 | 35338305 | ID=Msa0116380-mRNA-1:five_prime_utr;Parent=Msa0116380-mRNA-1 |
| chr1_3 | CDS | 35338290 | 35338304 | 35338290 | ID=Msa0116380-mRNA-1:cds;Parent=Msa0116380-mRNA-1 |
| chr1_3 | CDS | 35338114 | 35338170 | 35338114 | ID=Msa0116380-mRNA-1:cds;Parent=Msa0116380-mRNA-1 |
| chr1_3 | CDS | 35337798 | 35338001 | 35337798 | ID=Msa0116380-mRNA-1:cds;Parent=Msa0116380-mRNA-1 |
| chr1_3 | CDS | 35337326 | 35337385 | 35337326 | ID=Msa0116380-mRNA-1:cds;Parent=Msa0116380-mRNA-1 |
| chr1_3 | CDS | 35336838 | 35336964 | 35336838 | ID=Msa0116380-mRNA-1:cds;Parent=Msa0116380-mRNA-1 |
| chr1_3 | CDS | 35335823 | 35335911 | 35335823 | ID=Msa0116380-mRNA-1:cds;Parent=Msa0116380-mRNA-1 |
| chr1_3 | three_prime_UTR | 35335501 | 35335822 | 35335501 | ID=Msa0116380-mRNA-1:three_prime_utr;Parent=Msa0116380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
