AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0720070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720070 MtrunA17_Chr5g0410741 96.543 405 7 5 1 401 1 402 0.0 779
Msa0720070 MtrunA17_Chr8g0366281 56.235 409 111 17 1 398 1 352 5.40e-121 355
Msa0720070 MtrunA17_Chr3g0109981 52.968 219 65 8 200 400 256 454 1.63e-51 179
Msa0720070 MtrunA17_Chr1g0154261 46.032 189 72 7 212 400 120 278 3.82e-37 136
Msa0720070 MtrunA17_Chr6g0479431 76.744 86 18 1 200 283 182 267 2.18e-36 136
Msa0720070 MtrunA17_Chr7g0243081 44.355 124 42 4 177 290 45 151 8.51e-23 98.6
Msa0720070 MtrunA17_Chr1g0210911 48.113 106 47 4 217 316 21 124 4.98e-21 93.2
Msa0720070 MtrunA17_Chr1g0162931 65.517 58 20 0 217 274 17 74 6.28e-21 92.0
Msa0720070 MtrunA17_Chr2g0320231 68.966 58 18 0 217 274 96 153 1.25e-19 89.7
Msa0720070 MtrunA17_Chr8g0379121 64.062 64 22 1 217 280 110 172 2.72e-19 89.4
Msa0720070 MtrunA17_Chr7g0261911 54.054 74 34 0 212 285 256 329 9.21e-18 85.1
Msa0720070 MtrunA17_Chr1g0190301 63.333 60 22 0 215 274 172 231 3.56e-17 82.4
Msa0720070 MtrunA17_Chr2g0288601 64.407 59 20 1 211 269 65 122 4.63e-17 77.0
Msa0720070 MtrunA17_Chr3g0095611 58.929 56 23 0 219 274 20 75 7.02e-17 79.0
Msa0720070 MtrunA17_Chr5g0409731 69.811 53 16 0 219 271 26 78 7.70e-17 80.5
Msa0720070 MtrunA17_Chr7g0274471 64.286 56 20 0 219 274 219 274 1.48e-16 81.3
Msa0720070 MtrunA17_Chr2g0283951 55.405 74 28 2 217 286 88 160 2.66e-16 79.7
Msa0720070 MtrunA17_Chr7g0258551 60.000 55 22 0 220 274 214 268 4.43e-16 79.3
Msa0720070 MtrunA17_Chr5g0417521 44.872 78 43 0 219 296 16 93 1.20e-15 77.8
Msa0720070 MtrunA17_Chr7g0254981 61.818 55 21 0 220 274 52 106 1.30e-15 76.6
Msa0720070 MtrunA17_Chr2g0291021 50.649 77 36 1 220 296 51 125 2.00e-15 76.6
Msa0720070 MtrunA17_Chr1g0175091 60.000 55 22 0 220 274 260 314 2.05e-15 77.4
Msa0720070 MtrunA17_Chr2g0321461 58.929 56 23 0 219 274 46 101 3.33e-15 76.6
Msa0720070 MtrunA17_Chr1g0197171 58.333 60 25 0 219 278 45 104 3.62e-15 75.5
Msa0720070 MtrunA17_Chr8g0356501 58.929 56 23 0 219 274 38 93 4.16e-15 75.9
Msa0720070 MtrunA17_Chr2g0310011 58.929 56 23 0 219 274 36 91 5.03e-15 75.9
Msa0720070 MtrunA17_Chr2g0290991 50.000 74 34 1 219 289 40 113 7.05e-15 75.1
Msa0720070 MtrunA17_Chr6g0461641 56.140 57 25 0 219 275 43 99 1.51e-14 74.7
Msa0720070 MtrunA17_Chr4g0042451 54.386 57 26 0 219 275 18 74 6.91e-14 72.4
Msa0720070 MtrunA17_Chr1g0175081 50.909 55 27 0 220 274 24 78 4.01e-12 62.4
Msa0720070 MtrunA17_Chr7g0242521 46.341 82 37 2 220 294 15 96 5.09e-12 65.5
Msa0720070 MtrunA17_Chr1g0175071 52.830 53 25 0 220 272 179 231 5.85e-12 66.2
Msa0720070 MtrunA17_Chr7g0258531 39.535 86 49 1 220 305 215 297 1.01e-11 65.9
Msa0720070 MtrunA17_Chr2g0304841 43.210 81 39 2 215 289 210 289 1.92e-11 65.9
Msa0720070 MtrunA17_Chr4g0045361 51.282 78 34 2 217 292 273 348 2.69e-11 64.7
Msa0720070 MtrunA17_Chr4g0062921 54.545 55 25 0 217 271 234 288 4.45e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720070 AT1G32240.1 53.846 416 145 14 1 399 1 386 1.98e-102 309
Msa0720070 AT1G32240.2 53.243 370 130 11 1 355 1 342 5.88e-94 286
Msa0720070 AT4G17695.1 38.702 416 141 14 1 400 1 318 1.55e-61 201
Msa0720070 AT5G16560.1 39.640 333 125 12 125 400 85 398 1.80e-48 170
Msa0720070 AT1G32240.3 61.589 151 42 7 253 399 1 139 8.34e-39 136
Msa0720070 AT5G42630.2 80.000 75 15 0 213 287 100 174 2.04e-35 130
Msa0720070 AT5G42630.1 59.016 122 43 2 213 330 100 218 5.55e-35 130
Msa0720070 AT2G38300.1 55.000 80 35 1 211 290 48 126 5.00e-21 93.6
Msa0720070 AT2G02060.2 72.222 54 15 0 218 271 29 82 4.79e-20 89.4
Msa0720070 AT2G02060.1 72.222 54 15 0 218 271 29 82 4.79e-20 89.4
Msa0720070 AT1G14600.1 66.102 59 20 0 218 276 23 81 9.52e-20 88.6
Msa0720070 AT4G04605.1 65.517 58 20 0 217 274 13 70 1.20e-19 87.4
Msa0720070 AT5G45580.1 46.087 115 53 3 219 325 8 121 1.94e-19 87.8
Msa0720070 AT5G45580.2 46.087 115 53 3 219 325 24 137 3.31e-19 87.4
Msa0720070 AT2G40260.1 62.687 67 24 1 211 277 76 141 1.46e-18 87.4
Msa0720070 AT4G04580.1 59.322 59 24 0 219 277 15 73 4.56e-18 81.6
Msa0720070 AT2G42660.1 66.071 56 19 0 219 274 51 106 7.69e-18 83.2
Msa0720070 AT4G04555.1 53.425 73 31 2 202 274 1 70 7.37e-17 76.3
Msa0720070 AT4G28610.1 65.455 55 19 0 220 274 227 281 3.41e-16 80.1
Msa0720070 AT3G12730.1 62.500 56 21 0 219 274 24 79 4.83e-16 77.4
Msa0720070 AT5G29000.4 52.778 72 34 0 220 291 233 304 1.15e-15 77.8
Msa0720070 AT2G01060.1 63.636 55 20 0 220 274 17 71 1.59e-15 77.0
Msa0720070 AT3G04450.3 56.250 64 28 0 211 274 231 294 1.67e-15 77.0
Msa0720070 AT3G04450.4 54.286 70 31 1 206 274 185 254 2.76e-15 77.4
Msa0720070 AT3G04450.2 54.286 70 31 1 206 274 185 254 2.76e-15 77.4
Msa0720070 AT3G24120.2 62.264 53 20 0 219 271 42 94 2.78e-15 76.3
Msa0720070 AT3G04450.1 54.286 70 31 1 206 274 225 294 2.99e-15 77.4
Msa0720070 AT3G24120.1 62.264 53 20 0 219 271 42 94 3.00e-15 76.3
Msa0720070 AT5G29000.1 54.545 66 30 0 220 285 190 255 3.50e-15 77.0
Msa0720070 AT5G29000.3 54.545 66 30 0 220 285 190 255 3.50e-15 77.0
Msa0720070 AT5G29000.2 54.545 66 30 0 220 285 233 298 4.31e-15 77.0
Msa0720070 AT1G79430.2 58.929 56 23 0 219 274 35 90 5.21e-15 76.3
Msa0720070 AT4G13640.2 60.377 53 21 0 219 271 38 90 1.01e-14 74.7
Msa0720070 AT4G13640.1 60.377 53 21 0 219 271 38 90 1.03e-14 74.7
Msa0720070 AT5G06800.3 50.794 63 31 0 212 274 186 248 2.46e-14 73.2
Msa0720070 AT5G18240.2 55.357 56 25 0 219 274 46 101 4.11e-14 73.9
Msa0720070 AT5G18240.3 55.357 56 25 0 219 274 46 101 4.11e-14 73.9
Msa0720070 AT3G04030.1 53.571 56 26 0 219 274 46 101 4.45e-14 73.6
Msa0720070 AT5G18240.5 55.357 56 25 0 219 274 46 101 4.55e-14 73.6
Msa0720070 AT5G18240.1 55.357 56 25 0 219 274 46 101 4.80e-14 73.6
Msa0720070 AT5G18240.4 55.357 56 25 0 219 274 46 101 4.80e-14 73.6
Msa0720070 AT3G04030.3 53.571 56 26 0 219 274 46 101 5.02e-14 73.6
Msa0720070 AT3G13040.3 46.154 104 50 3 175 274 196 297 6.14e-14 73.6
Msa0720070 AT3G13040.1 46.154 104 50 3 175 274 196 297 6.14e-14 73.6
Msa0720070 AT3G13040.2 46.154 104 50 3 175 274 196 297 6.14e-14 73.6
Msa0720070 AT2G20400.2 63.636 55 20 0 220 274 233 287 6.85e-14 73.2
Msa0720070 AT2G20400.1 63.636 55 20 0 220 274 233 287 7.00e-14 73.2
Msa0720070 AT5G06800.1 56.364 55 24 0 220 274 194 248 9.11e-14 72.8
Msa0720070 AT5G06800.2 56.364 55 24 0 220 274 194 248 9.45e-14 72.8
Msa0720070 AT2G06020.1 55.738 61 27 0 220 280 88 148 1.62e-13 71.2
Msa0720070 AT1G69580.1 50.877 57 28 0 219 275 35 91 9.21e-13 69.3
Msa0720070 AT1G69580.2 50.877 57 28 0 219 275 35 91 9.98e-13 69.3
Msa0720070 AT3G04030.2 51.786 56 26 1 219 274 46 100 1.31e-11 66.2
Msa0720070 AT2G03500.1 53.448 58 27 0 214 271 229 286 3.42e-11 65.1

Find 112 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTATTTCCACTATTT+TGG 0.109662 5_1:-15915395 None:intergenic
TGATCTTCCTTGCTGCTTAA+TGG 0.145751 5_1:-15917644 None:intergenic
ATTAGTTCAAGAACTGATTT+TGG 0.179424 5_1:-15916140 None:intergenic
AAATCCAAATTAGGTTTCTT+TGG 0.203381 5_1:-15920142 None:intergenic
GTGAATTCCAAATCCAAATT+AGG 0.218998 5_1:-15920151 None:intergenic
GTTGTTGTTGGTTTGGTATT+TGG 0.222179 5_1:-15915168 None:intergenic
AAGCCCAAAGAAACCTAATT+TGG 0.224728 5_1:+15920138 Msa0720070:CDS
ATAAGGAATGTTATGGTCTT+TGG 0.242549 5_1:+15917680 Msa0720070:CDS
AAACCAAAGGTTGATTCTAT+TGG 0.242636 5_1:+15918835 Msa0720070:CDS
AAGAAAGAAAGAAAAGTAAA+AGG 0.256742 5_1:+15920319 Msa0720070:three_prime_UTR
AAGAAATGGATTTGGGGTTT+TGG 0.258801 5_1:+15915223 Msa0720070:CDS
AACCAACAACAACAAGTAAT+TGG 0.268823 5_1:+15915178 Msa0720070:CDS
AAAGAAACCTAATTTGGATT+TGG 0.275662 5_1:+15920144 Msa0720070:CDS
TTCCAATTACTTGTTGTTGT+TGG 0.279422 5_1:-15915180 None:intergenic
GTTCATGCTGTTGAGCTCTT+AGG 0.283761 5_1:+15915813 Msa0720070:CDS
CAAGCATTCAATCAAGTTGA+TGG 0.292669 5_1:-15914820 None:intergenic
AAACAAAGCACTAGTTGTTT+TGG 0.296720 5_1:+15915074 Msa0720070:five_prime_UTR
GGTGTTGTTGTTGTGGTTGA+TGG 0.297192 5_1:-15915485 None:intergenic
GTCTAAGAAAACCAAGTTCT+TGG 0.298952 5_1:-15915521 None:intergenic
ACAGAAGAAGAAATGGATTT+GGG 0.301557 5_1:+15915216 Msa0720070:CDS
AAAATCAGTTCTTGAACTAA+TGG 0.321394 5_1:+15916142 Msa0720070:CDS
AATCATCTTCATATTCTTGA+TGG 0.324988 5_1:+15915627 Msa0720070:CDS
AACAGAAGAAGAAATGGATT+TGG 0.326435 5_1:+15915215 Msa0720070:CDS
GAAGATGAAGCATACTTTCA+TGG 0.330340 5_1:-15915839 None:intergenic
ACATGTCAAGTCTCACTTAC+AGG 0.334902 5_1:+15916187 Msa0720070:CDS
AATCCAAATTAGGTTTCTTT+GGG 0.339574 5_1:-15920141 None:intergenic
TCTTTGGGCTTGATCCTGAT+AGG 0.348645 5_1:-15920126 None:intergenic
ATTACTTGTTGTTGTTGGTT+TGG 0.364974 5_1:-15915175 None:intergenic
CAAGTTCTTGGCTTAAGCTT+TGG 0.365718 5_1:-15915509 None:intergenic
CTAATTTGCAAAGACAAATC+TGG 0.371942 5_1:-15915141 None:intergenic
CTCTCATAGCTTAGACACTT+TGG 0.377871 5_1:-15920076 None:intergenic
ATGGTGTTGAAAGAGTGGTT+GGG 0.383264 5_1:-15915466 None:intergenic
TAAACAGGAATTCCTCTAAT+AGG 0.385929 5_1:-15915543 None:intergenic
AACAACAACAGAAGAAGAAA+TGG 0.386085 5_1:+15915209 Msa0720070:CDS
CATCATCACTTCCAAAATAG+TGG 0.402204 5_1:+15915384 Msa0720070:CDS
TTTGAATCTAAAGACTTTGT+TGG 0.403487 5_1:-15915333 None:intergenic
GTCTTTGGAGCAACTCTTCT+CGG 0.404869 5_1:+15917695 Msa0720070:CDS
TTGAATCTAAAGACTTTGTT+GGG 0.405260 5_1:-15915332 None:intergenic
AGTTCATCTACAAACCTATC+AGG 0.408228 5_1:+15920112 Msa0720070:CDS
GTTCTTGGCTTAAGCTTTGG+TGG 0.418363 5_1:-15915506 None:intergenic
CTAACACAATGAACTCTGAT+AGG 0.418494 5_1:-15920423 None:intergenic
TTTCCAATAGAATCAACCTT+TGG 0.420087 5_1:-15918838 None:intergenic
GTATACGACAATGGATCATC+TGG 0.424138 5_1:+15917562 Msa0720070:CDS
TTTGATGAAAAGATTGATAA+GGG 0.432631 5_1:-15915425 None:intergenic
AATAGGGAAGCTTGGTTACA+TGG 0.432961 5_1:+15918811 Msa0720070:intron
ATCAAAGCTTGAGATTGAAA+AGG 0.435034 5_1:-15915702 None:intergenic
AAACTCTTTATCATCATCAA+TGG 0.438055 5_1:+15915266 Msa0720070:CDS
AATCAAGATAAGGAATGTTA+TGG 0.445329 5_1:+15917673 Msa0720070:CDS
GATGGTGTTGAAAGAGTGGT+TGG 0.452166 5_1:-15915467 None:intergenic
TCAAAGCTTGAGATTGAAAA+GGG 0.452273 5_1:-15915701 None:intergenic
AGGTGTAATTAATAATTGAT+TGG 0.458486 5_1:-15914884 None:intergenic
TGGTGTTGAAAGAGTGGTTG+GGG 0.461747 5_1:-15915465 None:intergenic
GATTTAAGATTGAGAGAGGA+AGG 0.463601 5_1:-15914777 None:intergenic
TTGTTGTTAGAAATAGTAGA+AGG 0.465912 5_1:-15915663 None:intergenic
CAAAGCTTAAGCCAAGAACT+TGG 0.469777 5_1:+15915510 Msa0720070:CDS
TTGTTGGGTTTGAAAGAGAA+AGG 0.470489 5_1:-15915317 None:intergenic
CTTTGGTGGTGTTGTTGTTG+TGG 0.477994 5_1:-15915492 None:intergenic
GATTATGATTATGAAGTTGA+GGG 0.482816 5_1:-15915590 None:intergenic
TTGGTTGTAATAGGGAAGCT+TGG 0.485851 5_1:+15918803 Msa0720070:intron
AGACAGTTGGAAGGTTAGCT+AGG 0.490441 5_1:-15914925 None:intergenic
GAAAGAGACGTGAGAGAGAG+AGG 0.492090 5_1:+15920525 Msa0720070:three_prime_UTR
AATCTCAAAGAGGTTGGCCT+AGG 0.496863 5_1:-15920174 None:intergenic
AATTTATATATAGAGACAGT+TGG 0.498827 5_1:-15914938 None:intergenic
ATGAGATTTAAGATTGAGAG+AGG 0.506309 5_1:-15914781 None:intergenic
TAAAAGTATGAAGTGATCCT+TGG 0.507777 5_1:+15920566 Msa0720070:three_prime_UTR
TGAGGGAATGACAAAGGAGG+AGG 0.508302 5_1:-15915573 None:intergenic
GTAGTAGTCCAACGCATCCT+TGG 0.510246 5_1:-15915774 None:intergenic
GATAGAGTAGGAGCTTCATC+AGG 0.511299 5_1:+15917402 Msa0720070:CDS
ATCAAGTGTTAATCAAGATA+AGG 0.511492 5_1:+15917663 Msa0720070:CDS
GTGATCCTTGGTAATTGTAA+TGG 0.517963 5_1:+15920578 Msa0720070:three_prime_UTR
TGATTATGATTATGAAGTTG+AGG 0.522631 5_1:-15915591 None:intergenic
CACAATGAACTCTGATAGGA+AGG 0.524152 5_1:-15920419 None:intergenic
GTTGTTGGTTTGGTATTTGG+AGG 0.528968 5_1:-15915165 None:intergenic
TTGGATTTGGAATTCACCCT+AGG 0.535688 5_1:+15920157 Msa0720070:CDS
GGTTGATGGTGTTGAAAGAG+TGG 0.538405 5_1:-15915471 None:intergenic
AAAGAGACGTGAGAGAGAGA+GGG 0.539683 5_1:+15920526 Msa0720070:three_prime_UTR
CAGAAAGCAACAAAAGAAGA+GGG 0.541966 5_1:+15920376 Msa0720070:three_prime_UTR
AGAGTTAGAGCAATGGAAGC+TGG 0.543410 5_1:+15920260 Msa0720070:three_prime_UTR
TTCAATCTCAAGCTTTGATG+AGG 0.545726 5_1:+15915706 Msa0720070:CDS
ACAGAAAGCAACAAAAGAAG+AGG 0.548854 5_1:+15920375 Msa0720070:three_prime_UTR
CATGCTGTTGAGCTCTTAGG+TGG 0.554981 5_1:+15915816 Msa0720070:CDS
AAAGACAAATCTGGTTGTGC+TGG 0.558095 5_1:-15915132 None:intergenic
AGAAAGCAACAAAAGAAGAG+GGG 0.560782 5_1:+15920377 Msa0720070:three_prime_UTR
TGGAAACATGCAATCTCTTG+AGG 0.562071 5_1:+15918855 Msa0720070:CDS
TGAGAGCACCAAGGATGCGT+TGG 0.563345 5_1:+15915766 Msa0720070:CDS
CAGAAGAAGAAATGGATTTG+GGG 0.573275 5_1:+15915217 Msa0720070:CDS
GGAAGTGATGATGATGAATG+AGG 0.577883 5_1:-15915374 None:intergenic
TCTTGAACTAATGGATGTGA+AGG 0.578980 5_1:+15916151 Msa0720070:CDS
GAAAGCAACAAAAGAAGAGG+GGG 0.581868 5_1:+15920378 Msa0720070:three_prime_UTR
TATATATAGAGACAGTTGGA+AGG 0.586597 5_1:-15914934 None:intergenic
CTAGGTTAGAGACTGCAAGA+TGG 0.596830 5_1:-15914907 None:intergenic
TGAAGTTGAGGGAATGACAA+AGG 0.596844 5_1:-15915579 None:intergenic
GGTGTGTAGATAGCAAAAGA+TGG 0.596942 5_1:+15915101 Msa0720070:exon
ATCTCAAAGAGGTTGGCCTA+GGG 0.597654 5_1:-15920173 None:intergenic
AAGAGACGTGAGAGAGAGAG+GGG 0.600034 5_1:+15920527 Msa0720070:three_prime_UTR
TTGGTTACATGGTAAACCAA+AGG 0.600087 5_1:+15918822 Msa0720070:CDS
AGTTGAGGGAATGACAAAGG+AGG 0.601773 5_1:-15915576 None:intergenic
GGGTGAAATCTCAAAGAGGT+TGG 0.613965 5_1:-15920180 None:intergenic
AACTGAAAGAGTTAGAGCAA+TGG 0.615451 5_1:+15920253 Msa0720070:three_prime_UTR
CAATCTGATGTATACGACAA+TGG 0.619241 5_1:+15917553 Msa0720070:CDS
GTGAAAACTACAGATAGAGT+AGG 0.620063 5_1:+15917390 Msa0720070:CDS
GACAAGGTATGTGAAGTGAA+TGG 0.622730 5_1:-15914730 None:intergenic
AAAGAGAGAAAGAAATGACA+AGG 0.625252 5_1:-15914746 None:intergenic
TTAAATCCAGATGTATCGGA+CGG 0.625352 5_1:+15917368 Msa0720070:intron
GGTTAGAGACTGCAAGATGG+AGG 0.645066 5_1:-15914904 None:intergenic
GATTTATCCATTAAGCAGCA+AGG 0.648761 5_1:+15917637 Msa0720070:CDS
AGCTATGAGAGAATATCAGA+TGG 0.655293 5_1:+15920088 Msa0720070:CDS
GGTGTTGAAAGAGTGGTTGG+GGG 0.661980 5_1:-15915464 None:intergenic
GTGCTCCATTACAATTACCA+AGG 0.676755 5_1:-15920583 None:intergenic
GCTAGGGTGAAATCTCAAAG+AGG 0.685178 5_1:-15920184 None:intergenic
GAGCTAAAGAAAGAAACACG+AGG 0.718935 5_1:+15920341 Msa0720070:three_prime_UTR
AAAGAAGCATGAGAGCACCA+AGG 0.725154 5_1:+15915757 Msa0720070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTAAAAAAAAAAAA+TGG - chr5_1:15919996-15920015 None:intergenic 0.0%
!!! CTTAAAAATATATTTGTTTT+TGG + chr5_1:15915874-15915893 Msa0720070:intron 10.0%
!! TTAATGATGTTTAAATTTAT+AGG + chr5_1:15916339-15916358 Msa0720070:intron 10.0%
!!! CTAATAATATGATTTAATTT+TGG + chr5_1:15917283-15917302 Msa0720070:intron 10.0%
!! ATATAAATTATCATATAGTA+TGG - chr5_1:15919290-15919309 None:intergenic 10.0%
!! TTTATATACACAAAAATAAT+TGG + chr5_1:15919371-15919390 Msa0720070:intron 10.0%
!!! ATTTGATTTTGTAATTTTAA+TGG + chr5_1:15919930-15919949 Msa0720070:intron 10.0%
!! TAAAAAAAAAAAATGGAAAT+GGG - chr5_1:15919989-15920008 None:intergenic 10.0%
!! TTAAAAAAAAAAAATGGAAA+TGG - chr5_1:15919990-15920009 None:intergenic 10.0%
!!! AAAAATATAATATGTTGATT+TGG - chr5_1:15920451-15920470 None:intergenic 10.0%
!!! AATAGTAGAATTTTTTTCTA+AGG - chr5_1:15914972-15914991 None:intergenic 15.0%
!!! CAAATATATTTTTAAGAAAG+TGG - chr5_1:15915870-15915889 None:intergenic 15.0%
!! GTTAAAGAAAATTAAAACAA+GGG - chr5_1:15915941-15915960 None:intergenic 15.0%
!! TGTTAAAGAAAATTAAAACA+AGG - chr5_1:15915942-15915961 None:intergenic 15.0%
!! ATATTAATTTCAAATTCCAA+TGG + chr5_1:15916416-15916435 Msa0720070:intron 15.0%
!!! GATTTTATATTCTTTTAAGT+TGG - chr5_1:15916565-15916584 None:intergenic 15.0%
!!! TCAATTCGAATATATTTTTT+TGG - chr5_1:15916758-15916777 None:intergenic 15.0%
!! AAAAAAATATATTCGAATTG+AGG + chr5_1:15916757-15916776 Msa0720070:intron 15.0%
!!! GGTCTAATTTTTTTTTTTAT+CGG - chr5_1:15916852-15916871 None:intergenic 15.0%
!! TAAAAACAAAACAAAATGAT+AGG + chr5_1:15916986-15917005 Msa0720070:intron 15.0%
!! TTCTATCATATATTAATTGT+TGG + chr5_1:15917441-15917460 Msa0720070:intron 15.0%
!! AGTATAAAAAAAAGGATTAT+AGG - chr5_1:15917748-15917767 None:intergenic 15.0%
!!! ATTTTTTTAAGGAAGATTTT+TGG - chr5_1:15918433-15918452 None:intergenic 15.0%
!! TCTATGACTATATATAATAT+AGG - chr5_1:15918618-15918637 None:intergenic 15.0%
!! ATATATAGTCATAGAATAAA+TGG + chr5_1:15918623-15918642 Msa0720070:intron 15.0%
!!! ATAACTTTTTTCAAAACAAA+AGG - chr5_1:15918916-15918935 None:intergenic 15.0%
!! ACAAAAAAGAAAGAAAAAAA+AGG + chr5_1:15919056-15919075 Msa0720070:intron 15.0%
!!! TTATATAGTCATTTTCAATA+TGG - chr5_1:15919215-15919234 None:intergenic 15.0%
!! AAGAATATTTATATGAATGA+GGG - chr5_1:15919473-15919492 None:intergenic 15.0%
!! AAAGAATATTTATATGAATG+AGG - chr5_1:15919474-15919493 None:intergenic 15.0%
!!! CAACATATTATATTTTTCTT+TGG + chr5_1:15920454-15920473 Msa0720070:three_prime_UTR 15.0%
!! AGGTGTAATTAATAATTGAT+TGG - chr5_1:15914887-15914906 None:intergenic 20.0%
!! AATTTATATATAGAGACAGT+TGG - chr5_1:15914941-15914960 None:intergenic 20.0%
!!! CATTATTATTTCCACTATTT+TGG - chr5_1:15915398-15915417 None:intergenic 20.0%
!! TTTGATGAAAAGATTGATAA+GGG - chr5_1:15915428-15915447 None:intergenic 20.0%
!!! TTTTGATGAAAAGATTGATA+AGG - chr5_1:15915429-15915448 None:intergenic 20.0%
!! CTAGAATAAAAAGTAGATTA+AGG - chr5_1:15915908-15915927 None:intergenic 20.0%
!! AAGACAATTAGAAGAAAAAA+GGG + chr5_1:15915974-15915993 Msa0720070:intron 20.0%
!! TTAAGACAAATTAGAGTTTA+AGG - chr5_1:15916217-15916236 None:intergenic 20.0%
!!! TTATATTCTTTTAAGTTGGA+TGG - chr5_1:15916561-15916580 None:intergenic 20.0%
!!! TACTAATTTTATTAATGGCA+TGG - chr5_1:15916685-15916704 None:intergenic 20.0%
!!! GAATATATTTTTTTGGTACT+TGG - chr5_1:15916751-15916770 None:intergenic 20.0%
!!! TTTTATAATATGCATATGCA+TGG - chr5_1:15917124-15917143 None:intergenic 20.0%
!!! AATTTTAAATCCAGATGTAT+CGG + chr5_1:15917364-15917383 Msa0720070:intron 20.0%
!! ATATTATTATTACACCATCA+TGG - chr5_1:15918311-15918330 None:intergenic 20.0%
!!! GAGATATCTCTATTTTTTTA+AGG - chr5_1:15918444-15918463 None:intergenic 20.0%
!! GTTTCAAGATTTCTAATTAT+GGG - chr5_1:15918558-15918577 None:intergenic 20.0%
!! GGAATATATATGATATCAAT+TGG + chr5_1:15918644-15918663 Msa0720070:intron 20.0%
!!! CTTTTACTTATTCTAAAGAT+TGG - chr5_1:15918688-15918707 None:intergenic 20.0%
!!! CAATCTTTAGAATAAGTAAA+AGG + chr5_1:15918686-15918705 Msa0720070:intron 20.0%
!! AAAAAGAAAAGCAAAACTTA+AGG - chr5_1:15918747-15918766 None:intergenic 20.0%
!! AATTAATAACTCTTAACTAG+AGG - chr5_1:15919190-15919209 None:intergenic 20.0%
!! ATAAATTACTGAGTATGAAA+GGG - chr5_1:15919556-15919575 None:intergenic 20.0%
!! AATAAATTACTGAGTATGAA+AGG - chr5_1:15919557-15919576 None:intergenic 20.0%
!! ATGATGAGAATATGATTAAA+GGG - chr5_1:15919592-15919611 None:intergenic 20.0%
!! TATGATGAGAATATGATTAA+AGG - chr5_1:15919593-15919612 None:intergenic 20.0%
!! AAAATACGATTCAAAAGAAA+CGG - chr5_1:15919811-15919830 None:intergenic 20.0%
!!! ATATATTTTTTCAGAAGCTA+GGG - chr5_1:15920203-15920222 None:intergenic 20.0%
!!! AATATATTTTTTCAGAAGCT+AGG - chr5_1:15920204-15920223 None:intergenic 20.0%
!! AAGAAAGAAAGAAAAGTAAA+AGG + chr5_1:15920319-15920338 Msa0720070:three_prime_UTR 20.0%
!!! TAGAATTTTTTTCTAAGGAG+TGG - chr5_1:15914967-15914986 None:intergenic 25.0%
! AAACTCTTTATCATCATCAA+TGG + chr5_1:15915266-15915285 Msa0720070:CDS 25.0%
! TTGAATCTAAAGACTTTGTT+GGG - chr5_1:15915335-15915354 None:intergenic 25.0%
! TTTGAATCTAAAGACTTTGT+TGG - chr5_1:15915336-15915355 None:intergenic 25.0%
! GATTATGATTATGAAGTTGA+GGG - chr5_1:15915593-15915612 None:intergenic 25.0%
! TGATTATGATTATGAAGTTG+AGG - chr5_1:15915594-15915613 None:intergenic 25.0%
! AATCATCTTCATATTCTTGA+TGG + chr5_1:15915627-15915646 Msa0720070:CDS 25.0%
!! TTGTTGTTAGAAATAGTAGA+AGG - chr5_1:15915666-15915685 None:intergenic 25.0%
! CAAGACAATTAGAAGAAAAA+AGG + chr5_1:15915973-15915992 Msa0720070:intron 25.0%
!!! ATTAGTTCAAGAACTGATTT+TGG - chr5_1:15916143-15916162 None:intergenic 25.0%
! AAAATCAGTTCTTGAACTAA+TGG + chr5_1:15916142-15916161 Msa0720070:CDS 25.0%
! AAAGCAAAAAGCTGTTTATT+AGG - chr5_1:15916528-15916547 None:intergenic 25.0%
! AGTCAAAGGTTTAAACTTTA+AGG - chr5_1:15916873-15916892 None:intergenic 25.0%
! ACTTCTTTCTCAAATTCTTT+AGG + chr5_1:15916890-15916909 Msa0720070:intron 25.0%
!!! ATCTAATACAGAAGCATTTA+TGG - chr5_1:15917153-15917172 None:intergenic 25.0%
! ATCAAGTGTTAATCAAGATA+AGG + chr5_1:15917663-15917682 Msa0720070:CDS 25.0%
! AATCAAGATAAGGAATGTTA+TGG + chr5_1:15917673-15917692 Msa0720070:CDS 25.0%
! GGTTTCAAGATTTCTAATTA+TGG - chr5_1:15918559-15918578 None:intergenic 25.0%
!!! ATATAATATAGGAGCATTCA+TGG - chr5_1:15918607-15918626 None:intergenic 25.0%
!! TAAAAGGCATATAAGTAAGA+TGG + chr5_1:15918702-15918721 Msa0720070:intron 25.0%
!!! AGTTTTGCTTTTCTTTTTCA+TGG + chr5_1:15918749-15918768 Msa0720070:intron 25.0%
!!! TTAACCTTTGGAATATAAAG+GGG - chr5_1:15918892-15918911 None:intergenic 25.0%
!!! CTTAACCTTTGGAATATAAA+GGG - chr5_1:15918893-15918912 None:intergenic 25.0%
!!! AAGGGATTTTTTAGAAGAAA+AGG + chr5_1:15918980-15918999 Msa0720070:intron 25.0%
! TGTAATTGGTAAATGTGAAA+AGG - chr5_1:15919132-15919151 None:intergenic 25.0%
! TCACATTTACCAATTACAAA+AGG + chr5_1:15919134-15919153 Msa0720070:intron 25.0%
!! CGTTTTTAACCTTTTGTAAT+TGG - chr5_1:15919146-15919165 None:intergenic 25.0%
! AACGATTTGTGATGTAAAAA+AGG + chr5_1:15919162-15919181 Msa0720070:intron 25.0%
!! ATTGATAATTGAGTCAAATG+AGG - chr5_1:15919259-15919278 None:intergenic 25.0%
! TCATTTGACTCAATTATCAA+TGG + chr5_1:15919258-15919277 Msa0720070:intron 25.0%
! TATTTATATGAATGAGGGAA+AGG - chr5_1:15919468-15919487 None:intergenic 25.0%
! AGTATATAGTATTAGAGAAC+AGG - chr5_1:15919533-15919552 None:intergenic 25.0%
! TATGATTAAAGGGATAAAAG+AGG - chr5_1:15919582-15919601 None:intergenic 25.0%
! AATCCTATATAAATGTTGTG+TGG + chr5_1:15919667-15919686 Msa0720070:intron 25.0%
!!! TTGTTATTTGCTTTTTCAGA+AGG + chr5_1:15920045-15920064 Msa0720070:intron 25.0%
! AATCCAAATTAGGTTTCTTT+GGG - chr5_1:15920144-15920163 None:intergenic 25.0%
! AAATCCAAATTAGGTTTCTT+TGG - chr5_1:15920145-15920164 None:intergenic 25.0%
! AAAGAAACCTAATTTGGATT+TGG + chr5_1:15920144-15920163 Msa0720070:CDS 25.0%
AAAGAGAGAAAGAAATGACA+AGG - chr5_1:15914749-15914768 None:intergenic 30.0%
! ATGAGATTTAAGATTGAGAG+AGG - chr5_1:15914784-15914803 None:intergenic 30.0%
TATATATAGAGACAGTTGGA+AGG - chr5_1:15914937-15914956 None:intergenic 30.0%
!!! TGCTTTGTTTTTGTGGTTTT+GGG - chr5_1:15915064-15915083 None:intergenic 30.0%
!! AAACAAAGCACTAGTTGTTT+TGG + chr5_1:15915074-15915093 Msa0720070:five_prime_UTR 30.0%
! CTAATTTGCAAAGACAAATC+TGG - chr5_1:15915144-15915163 None:intergenic 30.0%
!! ATTACTTGTTGTTGTTGGTT+TGG - chr5_1:15915178-15915197 None:intergenic 30.0%
AACCAACAACAACAAGTAAT+TGG + chr5_1:15915178-15915197 Msa0720070:CDS 30.0%
!! TTCCAATTACTTGTTGTTGT+TGG - chr5_1:15915183-15915202 None:intergenic 30.0%
AACAACAACAGAAGAAGAAA+TGG + chr5_1:15915209-15915228 Msa0720070:CDS 30.0%
! AACAGAAGAAGAAATGGATT+TGG + chr5_1:15915215-15915234 Msa0720070:CDS 30.0%
! ACAGAAGAAGAAATGGATTT+GGG + chr5_1:15915216-15915235 Msa0720070:CDS 30.0%
TAAACAGGAATTCCTCTAAT+AGG - chr5_1:15915546-15915565 None:intergenic 30.0%
TCAAAGCTTGAGATTGAAAA+GGG - chr5_1:15915704-15915723 None:intergenic 30.0%
ATCAAAGCTTGAGATTGAAA+AGG - chr5_1:15915705-15915724 None:intergenic 30.0%
!! GTGTTTGAATGTTTGCTATA+GGG + chr5_1:15916111-15916130 Msa0720070:intron 30.0%
!! TGTTTGAATGTTTGCTATAG+GGG + chr5_1:15916112-15916131 Msa0720070:intron 30.0%
TTCTTTAGTCAGATTGAAGA+TGG + chr5_1:15916298-15916317 Msa0720070:intron 30.0%
ACTTTGTGAGTATACATTAG+AGG + chr5_1:15916376-15916395 Msa0720070:intron 30.0%
! ATCGATTTCTGAAAACAAGT+AGG + chr5_1:15916606-15916625 Msa0720070:intron 30.0%
GAATTTGAGAAAGAAGTCAA+AGG - chr5_1:15916887-15916906 None:intergenic 30.0%
AAGAGATCATTGAGTAATGA+TGG - chr5_1:15917033-15917052 None:intergenic 30.0%
GGTAAAGAAAGGGAAAAAAA+AGG - chr5_1:15917068-15917087 None:intergenic 30.0%
!!! TTTTTTCCCTTTCTTTACCA+TGG + chr5_1:15917069-15917088 Msa0720070:intron 30.0%
!! TACAGAAGCATTTATGGTTA+TGG - chr5_1:15917147-15917166 None:intergenic 30.0%
CAAGTAACAACTTTACTTAG+AGG + chr5_1:15917208-15917227 Msa0720070:intron 30.0%
ATAAGGAATGTTATGGTCTT+TGG + chr5_1:15917680-15917699 Msa0720070:CDS 30.0%
TATACTCTCTCAAAATCCAA+CGG - chr5_1:15917869-15917888 None:intergenic 30.0%
AACGAGATATAGTTGCAATA+TGG - chr5_1:15917944-15917963 None:intergenic 30.0%
TCACTTAAAACAACATCGTT+AGG - chr5_1:15917978-15917997 None:intergenic 30.0%
! TATTACACCATCATGGATTT+TGG - chr5_1:15918304-15918323 None:intergenic 30.0%
TAATATATACTCTCTTCCAG+TGG + chr5_1:15918325-15918344 Msa0720070:intron 30.0%
ATAGAGATATCTCTTTCCTT+AGG + chr5_1:15918451-15918470 Msa0720070:intron 30.0%
TTCTAATTATGGGACTACAA+GGG - chr5_1:15918548-15918567 None:intergenic 30.0%
TTTCTAATTATGGGACTACA+AGG - chr5_1:15918549-15918568 None:intergenic 30.0%
TTCAAAGGGAATATTTGCTT+TGG - chr5_1:15918580-15918599 None:intergenic 30.0%
AGAAATATTCTCTCTGTGTT+TGG + chr5_1:15918784-15918803 Msa0720070:intron 30.0%
! AAACCAAAGGTTGATTCTAT+TGG + chr5_1:15918835-15918854 Msa0720070:CDS 30.0%
TTTCCAATAGAATCAACCTT+TGG - chr5_1:15918841-15918860 None:intergenic 30.0%
!! TAACCTTTGGAATATAAAGG+GGG - chr5_1:15918891-15918910 None:intergenic 30.0%
!! GCTTAACCTTTGGAATATAA+AGG - chr5_1:15918894-15918913 None:intergenic 30.0%
AAAACAAAAGGCTTAACCTT+TGG - chr5_1:15918904-15918923 None:intergenic 30.0%
CAAATTTCAAAGCATGTGTT+TGG + chr5_1:15918948-15918967 Msa0720070:intron 30.0%
TATTGCCATGCACATTATTA+TGG + chr5_1:15919024-15919043 Msa0720070:intron 30.0%
TTGTCCTTCACAAATTCAAA+TGG + chr5_1:15919096-15919115 Msa0720070:intron 30.0%
CTAACCATTTGAATTTGTGA+AGG - chr5_1:15919103-15919122 None:intergenic 30.0%
AAACATTATACCATTCATGC+AGG - chr5_1:15919353-15919372 None:intergenic 30.0%
CTCTCATTACTCATAGTAAA+AGG - chr5_1:15919644-15919663 None:intergenic 30.0%
!!! TTTGCTTTTTCAGAAGGAAA+TGG + chr5_1:15920051-15920070 Msa0720070:intron 30.0%
GTGAATTCCAAATCCAAATT+AGG - chr5_1:15920154-15920173 None:intergenic 30.0%
! TAAAAGTATGAAGTGATCCT+TGG + chr5_1:15920566-15920585 Msa0720070:three_prime_UTR 30.0%
! GATTTAAGATTGAGAGAGGA+AGG - chr5_1:15914780-15914799 None:intergenic 35.0%
!! CAAGCATTCAATCAAGTTGA+TGG - chr5_1:15914823-15914842 None:intergenic 35.0%
!!! TGGTTTTGGGTTTTGGATTT+TGG - chr5_1:15915051-15915070 None:intergenic 35.0%
!!! GTTTTTGTGGTTTTGGGTTT+TGG - chr5_1:15915058-15915077 None:intergenic 35.0%
!!! GTGCTTTGTTTTTGTGGTTT+TGG - chr5_1:15915065-15915084 None:intergenic 35.0%
!!! CAACTAGTGCTTTGTTTTTG+TGG - chr5_1:15915071-15915090 None:intergenic 35.0%
!! GTTGTTGTTGGTTTGGTATT+TGG - chr5_1:15915171-15915190 None:intergenic 35.0%
! CAGAAGAAGAAATGGATTTG+GGG + chr5_1:15915217-15915236 Msa0720070:CDS 35.0%
!! AAGAAATGGATTTGGGGTTT+TGG + chr5_1:15915223-15915242 Msa0720070:CDS 35.0%
TTGTTGGGTTTGAAAGAGAA+AGG - chr5_1:15915320-15915339 None:intergenic 35.0%
CATCATCACTTCCAAAATAG+TGG + chr5_1:15915384-15915403 Msa0720070:CDS 35.0%
GTCTAAGAAAACCAAGTTCT+TGG - chr5_1:15915524-15915543 None:intergenic 35.0%
! GGTTTTCTTAGACCTATTAG+AGG + chr5_1:15915531-15915550 Msa0720070:CDS 35.0%
! TTCAATCTCAAGCTTTGATG+AGG + chr5_1:15915706-15915725 Msa0720070:CDS 35.0%
GAAGATGAAGCATACTTTCA+TGG - chr5_1:15915842-15915861 None:intergenic 35.0%
!! GGTGTTTGAATGTTTGCTAT+AGG + chr5_1:15916110-15916129 Msa0720070:intron 35.0%
! TCTTGAACTAATGGATGTGA+AGG + chr5_1:15916151-15916170 Msa0720070:CDS 35.0%
AAGATGGTACGATTCTGATT+GGG + chr5_1:15916314-15916333 Msa0720070:intron 35.0%
TAGAGGAAGCAATTAAGTGA+TGG + chr5_1:15916393-15916412 Msa0720070:intron 35.0%
TTCCAATGGTTTCCTTAGAA+AGG + chr5_1:15916430-15916449 Msa0720070:intron 35.0%
TCCAATGGTTTCCTTAGAAA+GGG + chr5_1:15916431-15916450 Msa0720070:intron 35.0%
ATTGAGAGAAACCCTTTCTA+AGG - chr5_1:15916445-15916464 None:intergenic 35.0%
TCTGAAAACAAGTAGGACAA+AGG + chr5_1:15916613-15916632 Msa0720070:intron 35.0%
! AACTATGAGGTAGTTTGTCT+TGG - chr5_1:15916658-15916677 None:intergenic 35.0%
! CATTGAGTAATGATGGTGTT+TGG - chr5_1:15917026-15917045 None:intergenic 35.0%
TTAAATCCAGATGTATCGGA+CGG + chr5_1:15917368-15917387 Msa0720070:intron 35.0%
GTGAAAACTACAGATAGAGT+AGG + chr5_1:15917390-15917409 Msa0720070:CDS 35.0%
TCTCCCTTAAACCATGAAAT+AGG + chr5_1:15917529-15917548 Msa0720070:intron 35.0%
CTCCCTTAAACCATGAAATA+GGG + chr5_1:15917530-15917549 Msa0720070:intron 35.0%
TGCCCTATTTCATGGTTTAA+GGG - chr5_1:15917535-15917554 None:intergenic 35.0%
TTGCCCTATTTCATGGTTTA+AGG - chr5_1:15917536-15917555 None:intergenic 35.0%
CAATCTGATGTATACGACAA+TGG + chr5_1:15917553-15917572 Msa0720070:CDS 35.0%
GATTTATCCATTAAGCAGCA+AGG + chr5_1:15917637-15917656 Msa0720070:CDS 35.0%
AAAACAACATCGTTAGGCTT+TGG - chr5_1:15917972-15917991 None:intergenic 35.0%
ATTTATACTCACCTGACAAG+TGG + chr5_1:15918024-15918043 Msa0720070:intron 35.0%
TTTATACTCACCTGACAAGT+GGG + chr5_1:15918025-15918044 Msa0720070:intron 35.0%
! TTTACTTCCTTTTGAACCAC+TGG - chr5_1:15918344-15918363 None:intergenic 35.0%
! CTACTACTTCTTTGAAGAGT+AGG - chr5_1:15918396-15918415 None:intergenic 35.0%
! TCTCTTTCCTTAGGATTTTG+TGG + chr5_1:15918460-15918479 Msa0720070:intron 35.0%
! CTCTTTCCTTAGGATTTTGT+GGG + chr5_1:15918461-15918480 Msa0720070:intron 35.0%
! TCTTTCCTTAGGATTTTGTG+GGG + chr5_1:15918462-15918481 Msa0720070:intron 35.0%
! TTTTGTGGGGTTCAAACATT+AGG + chr5_1:15918475-15918494 Msa0720070:intron 35.0%
TCAAACATTAGGCTCTTGTA+TGG + chr5_1:15918486-15918505 Msa0720070:intron 35.0%
CAAACATTAGGCTCTTGTAT+GGG + chr5_1:15918487-15918506 Msa0720070:intron 35.0%
AAACATTAGGCTCTTGTATG+GGG + chr5_1:15918488-15918507 Msa0720070:intron 35.0%
CACTAAGTTTCTCATCTGTT+GGG - chr5_1:15918514-15918533 None:intergenic 35.0%
GCATTCATGGAAGTTTCAAA+GGG - chr5_1:15918594-15918613 None:intergenic 35.0%
AGCATTCATGGAAGTTTCAA+AGG - chr5_1:15918595-15918614 None:intergenic 35.0%
TCTCTGTGTTTGGTTGTAAT+AGG + chr5_1:15918794-15918813 Msa0720070:intron 35.0%
CTCTGTGTTTGGTTGTAATA+GGG + chr5_1:15918795-15918814 Msa0720070:intron 35.0%
TTGGTTACATGGTAAACCAA+AGG + chr5_1:15918822-15918841 Msa0720070:CDS 35.0%
!! AACCTTTGGAATATAAAGGG+GGG - chr5_1:15918890-15918909 None:intergenic 35.0%
! ATGTGTTTGGAATGCATGAA+AGG + chr5_1:15918961-15918980 Msa0720070:intron 35.0%
! TGTGTTTGGAATGCATGAAA+GGG + chr5_1:15918962-15918981 Msa0720070:intron 35.0%
CATCTCCATAATAATGTGCA+TGG - chr5_1:15919032-15919051 None:intergenic 35.0%
AAATGAGGCAGGTTTAATAG+GGG - chr5_1:15919244-15919263 None:intergenic 35.0%
CAAATGAGGCAGGTTTAATA+GGG - chr5_1:15919245-15919264 None:intergenic 35.0%
TCAAATGAGGCAGGTTTAAT+AGG - chr5_1:15919246-15919265 None:intergenic 35.0%
ATAATTGAGTCAAATGAGGC+AGG - chr5_1:15919255-15919274 None:intergenic 35.0%
! AGGGAAAGGAAATTTGAGAT+GGG - chr5_1:15919454-15919473 None:intergenic 35.0%
TAGTATTAGAGAACAGGTAG+AGG - chr5_1:15919527-15919546 None:intergenic 35.0%
GCTCCACACAACATTTATAT+AGG - chr5_1:15919673-15919692 None:intergenic 35.0%
ATTCCTATATAACCATCGCA+TGG - chr5_1:15919770-15919789 None:intergenic 35.0%
AATTCAACGTGTTGTCGAAT+AGG - chr5_1:15919846-15919865 None:intergenic 35.0%
AGCTATGAGAGAATATCAGA+TGG + chr5_1:15920088-15920107 Msa0720070:CDS 35.0%
AGTTCATCTACAAACCTATC+AGG + chr5_1:15920112-15920131 Msa0720070:CDS 35.0%
AAGCCCAAAGAAACCTAATT+TGG + chr5_1:15920138-15920157 Msa0720070:CDS 35.0%
AACTGAAAGAGTTAGAGCAA+TGG + chr5_1:15920253-15920272 Msa0720070:three_prime_UTR 35.0%
ACAGAAAGCAACAAAAGAAG+AGG + chr5_1:15920375-15920394 Msa0720070:three_prime_UTR 35.0%
CAGAAAGCAACAAAAGAAGA+GGG + chr5_1:15920376-15920395 Msa0720070:three_prime_UTR 35.0%
AGAAAGCAACAAAAGAAGAG+GGG + chr5_1:15920377-15920396 Msa0720070:three_prime_UTR 35.0%
CTAACACAATGAACTCTGAT+AGG - chr5_1:15920426-15920445 None:intergenic 35.0%
! GTGATCCTTGGTAATTGTAA+TGG + chr5_1:15920578-15920597 Msa0720070:three_prime_UTR 35.0%
GACAAGGTATGTGAAGTGAA+TGG - chr5_1:15914733-15914752 None:intergenic 40.0%
!! GTGTGTTTTTGTGTGTGTGA+TGG - chr5_1:15914851-15914870 None:intergenic 40.0%
!!! AGCACTAGTTGTTTTGGTGA+AGG + chr5_1:15915080-15915099 Msa0720070:five_prime_UTR 40.0%
GGTGTGTAGATAGCAAAAGA+TGG + chr5_1:15915101-15915120 Msa0720070:exon 40.0%
AAAGACAAATCTGGTTGTGC+TGG - chr5_1:15915135-15915154 None:intergenic 40.0%
!! GTTGTTGGTTTGGTATTTGG+AGG - chr5_1:15915168-15915187 None:intergenic 40.0%
! GGAAGTGATGATGATGAATG+AGG - chr5_1:15915377-15915396 None:intergenic 40.0%
! ATGGTGTTGAAAGAGTGGTT+GGG - chr5_1:15915469-15915488 None:intergenic 40.0%
CAAGTTCTTGGCTTAAGCTT+TGG - chr5_1:15915512-15915531 None:intergenic 40.0%
CAAAGCTTAAGCCAAGAACT+TGG + chr5_1:15915510-15915529 Msa0720070:CDS 40.0%
!! GGAGGAGGATTTTGATAAAC+AGG - chr5_1:15915561-15915580 None:intergenic 40.0%
TGAAGTTGAGGGAATGACAA+AGG - chr5_1:15915582-15915601 None:intergenic 40.0%
ACATGTCAAGTCTCACTTAC+AGG + chr5_1:15916187-15916206 Msa0720070:CDS 40.0%
GAAGATGGTACGATTCTGAT+TGG + chr5_1:15916313-15916332 Msa0720070:intron 40.0%
! ACCCTTTCTAAGGAAACCAT+TGG - chr5_1:15916435-15916454 None:intergenic 40.0%
! ATTAGGTTGCAGAAGAAGCA+GGG - chr5_1:15916511-15916530 None:intergenic 40.0%
! TATTAGGTTGCAGAAGAAGC+AGG - chr5_1:15916512-15916531 None:intergenic 40.0%
TCTAGCGCAAATGGCTAATA+TGG + chr5_1:15916780-15916799 Msa0720070:intron 40.0%
AAGCTGCCATGGTAAAGAAA+GGG - chr5_1:15917078-15917097 None:intergenic 40.0%
AAAGCTGCCATGGTAAAGAA+AGG - chr5_1:15917079-15917098 None:intergenic 40.0%
! CTTTAACCATGGTTAGTCAC+AGG + chr5_1:15917095-15917114 Msa0720070:intron 40.0%
CATCAGATTGCCCTATTTCA+TGG - chr5_1:15917543-15917562 None:intergenic 40.0%
GTATACGACAATGGATCATC+TGG + chr5_1:15917562-15917581 Msa0720070:CDS 40.0%
! TGATCTTCCTTGCTGCTTAA+TGG - chr5_1:15917647-15917666 None:intergenic 40.0%
TACTGTACAGCTGTATTTGC+AGG + chr5_1:15917841-15917860 Msa0720070:intron 40.0%
CAAAAGAATTCCCACTTGTC+AGG - chr5_1:15918038-15918057 None:intergenic 40.0%
! TTTTGGATGCTCATGGTTTG+TGG - chr5_1:15918287-15918306 None:intergenic 40.0%
! TCATGGATTTTGGATGCTCA+TGG - chr5_1:15918294-15918313 None:intergenic 40.0%
TGAGCATCCAAAATCCATGA+TGG + chr5_1:15918294-15918313 Msa0720070:intron 40.0%
TTGAACCCCACAAAATCCTA+AGG - chr5_1:15918470-15918489 None:intergenic 40.0%
GCACTAAGTTTCTCATCTGT+TGG - chr5_1:15918515-15918534 None:intergenic 40.0%
TTGGTTGTAATAGGGAAGCT+TGG + chr5_1:15918803-15918822 Msa0720070:intron 40.0%
AATAGGGAAGCTTGGTTACA+TGG + chr5_1:15918811-15918830 Msa0720070:intron 40.0%
TGGAAACATGCAATCTCTTG+AGG + chr5_1:15918855-15918874 Msa0720070:CDS 40.0%
TTCCCCCCTTTATATTCCAA+AGG + chr5_1:15918885-15918904 Msa0720070:intron 40.0%
AATGAGGCAGGTTTAATAGG+GGG - chr5_1:15919243-15919262 None:intergenic 40.0%
CATGCAAGTTCTATAGCACT+TGG + chr5_1:15919411-15919430 Msa0720070:intron 40.0%
! GGGAAAGGAAATTTGAGATG+GGG - chr5_1:15919453-15919472 None:intergenic 40.0%
GAGGGAAAGGAAATTTGAGA+TGG - chr5_1:15919455-15919474 None:intergenic 40.0%
AGAACAGGTAGAGGAATCAA+AGG - chr5_1:15919518-15919537 None:intergenic 40.0%
ATAAATGTTGTGTGGAGCAG+TGG + chr5_1:15919675-15919694 Msa0720070:intron 40.0%
GAACCATGCGATGGTTATAT+AGG + chr5_1:15919764-15919783 Msa0720070:intron 40.0%
CTCTCATAGCTTAGACACTT+TGG - chr5_1:15920079-15920098 None:intergenic 40.0%
! TTGGATTTGGAATTCACCCT+AGG + chr5_1:15920157-15920176 Msa0720070:CDS 40.0%
GAGCTAAAGAAAGAAACACG+AGG + chr5_1:15920341-15920360 Msa0720070:three_prime_UTR 40.0%
GAAAGCAACAAAAGAAGAGG+GGG + chr5_1:15920378-15920397 Msa0720070:three_prime_UTR 40.0%
CACAATGAACTCTGATAGGA+AGG - chr5_1:15920422-15920441 None:intergenic 40.0%
GTGCTCCATTACAATTACCA+AGG - chr5_1:15920586-15920605 None:intergenic 40.0%
CTAGGTTAGAGACTGCAAGA+TGG - chr5_1:15914910-15914929 None:intergenic 45.0%
! AGACAGTTGGAAGGTTAGCT+AGG - chr5_1:15914928-15914947 None:intergenic 45.0%
!!! GGGGTTTTGGAAAAGAGCTT+TGG + chr5_1:15915236-15915255 Msa0720070:CDS 45.0%
! TGGTGTTGAAAGAGTGGTTG+GGG - chr5_1:15915468-15915487 None:intergenic 45.0%
! GATGGTGTTGAAAGAGTGGT+TGG - chr5_1:15915470-15915489 None:intergenic 45.0%
!! GGTTGATGGTGTTGAAAGAG+TGG - chr5_1:15915474-15915493 None:intergenic 45.0%
!! GGTGTTGTTGTTGTGGTTGA+TGG - chr5_1:15915488-15915507 None:intergenic 45.0%
!! CTTTGGTGGTGTTGTTGTTG+TGG - chr5_1:15915495-15915514 None:intergenic 45.0%
! GTTCTTGGCTTAAGCTTTGG+TGG - chr5_1:15915509-15915528 None:intergenic 45.0%
AGTTGAGGGAATGACAAAGG+AGG - chr5_1:15915579-15915598 None:intergenic 45.0%
! GCTCTCATGCTTCTTTTTGC+TGG - chr5_1:15915753-15915772 None:intergenic 45.0%
!! AAAGAAGCATGAGAGCACCA+AGG + chr5_1:15915757-15915776 Msa0720070:CDS 45.0%
GTTCATGCTGTTGAGCTCTT+AGG + chr5_1:15915813-15915832 Msa0720070:CDS 45.0%
! GAGGTAGTTTGTCTTGGCTT+GGG - chr5_1:15916652-15916671 None:intergenic 45.0%
! TGAGGTAGTTTGTCTTGGCT+TGG - chr5_1:15916653-15916672 None:intergenic 45.0%
ATGGCATGGACAGAACTATG+AGG - chr5_1:15916671-15916690 None:intergenic 45.0%
GAATTGAGGTCTAGCGCAAA+TGG + chr5_1:15916771-15916790 Msa0720070:intron 45.0%
! TACCATGGCAGCTTTAACCA+TGG + chr5_1:15917084-15917103 Msa0720070:intron 45.0%
AACCATGGTTAAAGCTGCCA+TGG - chr5_1:15917089-15917108 None:intergenic 45.0%
! TTTTCACCGTCCGATACATC+TGG - chr5_1:15917377-15917396 None:intergenic 45.0%
GATAGAGTAGGAGCTTCATC+AGG + chr5_1:15917402-15917421 Msa0720070:CDS 45.0%
!! GTCTTTGGAGCAACTCTTCT+CGG + chr5_1:15917695-15917714 Msa0720070:CDS 45.0%
TGAGTGAGTGATCAAGAGAG+AGG - chr5_1:15918182-15918201 None:intergenic 45.0%
CTCAACCTCACATGCAAACA+TGG + chr5_1:15918198-15918217 Msa0720070:intron 45.0%
CCTAACCATGTTTGCATGTG+AGG - chr5_1:15918206-15918225 None:intergenic 45.0%
CCTCACATGCAAACATGGTT+AGG + chr5_1:15918203-15918222 Msa0720070:intron 45.0%
CTCTCTTCCAGTGGTTCAAA+AGG + chr5_1:15918334-15918353 Msa0720070:intron 45.0%
AATACACACGCCTGCATGAA+TGG + chr5_1:15919340-15919359 Msa0720070:intron 45.0%
CAAGTTCTATAGCACTTGGC+AGG + chr5_1:15919415-15919434 Msa0720070:intron 45.0%
! ATAGCACTTGGCAGGCTTTT+AGG + chr5_1:15919423-15919442 Msa0720070:intron 45.0%
TCAGTGGCTCGTAGAATCAT+TGG - chr5_1:15919746-15919765 None:intergenic 45.0%
ATAACCATCGCATGGTTCAG+TGG - chr5_1:15919762-15919781 None:intergenic 45.0%
TCTTTGGGCTTGATCCTGAT+AGG - chr5_1:15920129-15920148 None:intergenic 45.0%
!! ATCTCAAAGAGGTTGGCCTA+GGG - chr5_1:15920176-15920195 None:intergenic 45.0%
!! AATCTCAAAGAGGTTGGCCT+AGG - chr5_1:15920177-15920196 None:intergenic 45.0%
GGGTGAAATCTCAAAGAGGT+TGG - chr5_1:15920183-15920202 None:intergenic 45.0%
GCTAGGGTGAAATCTCAAAG+AGG - chr5_1:15920187-15920206 None:intergenic 45.0%
AGAGTTAGAGCAATGGAAGC+TGG + chr5_1:15920260-15920279 Msa0720070:three_prime_UTR 45.0%
CAACAAAAGAAGAGGGGGTA+GGG + chr5_1:15920383-15920402 Msa0720070:three_prime_UTR 45.0%
AAAGAGACGTGAGAGAGAGA+GGG + chr5_1:15920526-15920545 Msa0720070:three_prime_UTR 45.0%
!! AAATAAATAAGTAAATAAAA+AGG - chr5_1:15916024-15916043 None:intergenic 5.0%
!!! AATTATTATTATTTTTTCTA+TGG + chr5_1:15916089-15916108 Msa0720070:intron 5.0%
!!! ATTATTACTAATTTTATTAA+TGG - chr5_1:15916690-15916709 None:intergenic 5.0%
!! AAAAAAATAGTATAAAAAAA+AGG - chr5_1:15917756-15917775 None:intergenic 5.0%
!!! AAATTTTTATTAAAAATGAT+AGG + chr5_1:15917787-15917806 Msa0720070:intron 5.0%
GGTTAGAGACTGCAAGATGG+AGG - chr5_1:15914907-15914926 None:intergenic 50.0%
! GGTGTTGAAAGAGTGGTTGG+GGG - chr5_1:15915467-15915486 None:intergenic 50.0%
TGAGGGAATGACAAAGGAGG+AGG - chr5_1:15915576-15915595 None:intergenic 50.0%
GTAGTAGTCCAACGCATCCT+TGG - chr5_1:15915777-15915796 None:intergenic 50.0%
CATGCTGTTGAGCTCTTAGG+TGG + chr5_1:15915816-15915835 Msa0720070:CDS 50.0%
TGGAAGCCTGTGACTAACCA+TGG - chr5_1:15917104-15917123 None:intergenic 50.0%
GCTGTATTTGCAGGAACCGT+TGG + chr5_1:15917850-15917869 Msa0720070:intron 50.0%
GTTGCAAGTTGCAGGAACGT+TGG - chr5_1:15917914-15917933 None:intergenic 50.0%
GTGTTGCAGTTGCAAGTTGC+AGG - chr5_1:15917922-15917941 None:intergenic 50.0%
GGACTACAAGGGCTTAGCTT+TGG - chr5_1:15918537-15918556 None:intergenic 50.0%
GCAACAAAAGAAGAGGGGGT+AGG + chr5_1:15920382-15920401 Msa0720070:three_prime_UTR 50.0%
GAAAGAGACGTGAGAGAGAG+AGG + chr5_1:15920525-15920544 Msa0720070:three_prime_UTR 50.0%
AAGAGACGTGAGAGAGAGAG+GGG + chr5_1:15920527-15920546 Msa0720070:three_prime_UTR 50.0%
!! TGAGAGCACCAAGGATGCGT+TGG + chr5_1:15915766-15915785 Msa0720070:CDS 55.0%
GTTGCAGAAGAAGCAGGGAG+AGG - chr5_1:15916506-15916525 None:intergenic 55.0%
GGGGGTAGGGTGAAAAAGCA+TGG + chr5_1:15920396-15920415 Msa0720070:three_prime_UTR 55.0%
! AGAGAGAGGGGCGAGCTTTT+AGG + chr5_1:15920539-15920558 Msa0720070:three_prime_UTR 55.0%
CGAGCCACTGAACCATGCGA+TGG + chr5_1:15919755-15919774 Msa0720070:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 15914716 15920641 15914716 ID=Msa0720070;Name=Msa0720070
chr5_1 mRNA 15914716 15920641 15914716 ID=Msa0720070-mRNA-1;Parent=Msa0720070;Name=Msa0720070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=404|1|1|1|1|1|6|449|401
chr5_1 exon 15914716 15915846 15914716 ID=Msa0720070-mRNA-1:exon:6119;Parent=Msa0720070-mRNA-1
chr5_1 exon 15916132 15916208 15916132 ID=Msa0720070-mRNA-1:exon:6120;Parent=Msa0720070-mRNA-1
chr5_1 exon 15917378 15917423 15917378 ID=Msa0720070-mRNA-1:exon:6121;Parent=Msa0720070-mRNA-1
chr5_1 exon 15917551 15917716 15917551 ID=Msa0720070-mRNA-1:exon:6122;Parent=Msa0720070-mRNA-1
chr5_1 exon 15918816 15918876 15918816 ID=Msa0720070-mRNA-1:exon:6123;Parent=Msa0720070-mRNA-1
chr5_1 exon 15920064 15920641 15920064 ID=Msa0720070-mRNA-1:exon:6124;Parent=Msa0720070-mRNA-1
chr5_1 five_prime_UTR 15914716 15915119 15914716 ID=Msa0720070-mRNA-1:five_prime_utr;Parent=Msa0720070-mRNA-1
chr5_1 CDS 15915120 15915846 15915120 ID=Msa0720070-mRNA-1:cds;Parent=Msa0720070-mRNA-1
chr5_1 CDS 15916132 15916208 15916132 ID=Msa0720070-mRNA-1:cds;Parent=Msa0720070-mRNA-1
chr5_1 CDS 15917378 15917423 15917378 ID=Msa0720070-mRNA-1:cds;Parent=Msa0720070-mRNA-1
chr5_1 CDS 15917551 15917716 15917551 ID=Msa0720070-mRNA-1:cds;Parent=Msa0720070-mRNA-1
chr5_1 CDS 15918816 15918876 15918816 ID=Msa0720070-mRNA-1:cds;Parent=Msa0720070-mRNA-1
chr5_1 CDS 15920064 15920192 15920064 ID=Msa0720070-mRNA-1:cds;Parent=Msa0720070-mRNA-1
chr5_1 three_prime_UTR 15920193 15920641 15920193 ID=Msa0720070-mRNA-1:three_prime_utr;Parent=Msa0720070-mRNA-1
Gene Sequence

>Msa0720070

ATGGAGCTATTTCCAGCACAACCAGATTTGTCTTTGCAAATTAGTCCTCCAAATACCAAACCAACAACAACAAGTAATTGGAAGAGAACAACAACAACAGAAGAAGAAATGGATTTGGGGTTTTGGAAAAGAGCTTTGGATTCAAGAAACTCTTTATCATCATCAATGGCTTCTAAAACTGATAATTACTCTTTTGACCTTTCTCTTTCAAACCCAACAAAGTCTTTAGATTCAAACAACAACACTTCAAATAACCTCATTCATCATCATCACTTCCAAAATAGTGGAAATAATAATGCAAACAACCCTTATCAATCTTTTCATCAAAATCATTACTTTCAACACCCCCAACCACTCTTTCAACACCATCAACCACAACAACAACACCACCAAAGCTTAAGCCAAGAACTTGGTTTTCTTAGACCTATTAGAGGAATTCCTGTTTATCAAAATCCTCCTCCTTTGTCATTCCCTCAACTTCATAATCATAATCATAATCATAATCTAAATCATCTTCATATTCTTGATGGTGCTACTACTACACCTTCTACTATTTCTAACAACAACAACACAAGTTCAAGCCCTTTTCAATCTCAAGCTTTGATGAGGTCAAGATTCTTGTCAAGATTTCCAGCAAAAAGAAGCATGAGAGCACCAAGGATGCGTTGGACTACTACACTTCATGCTCGATTTGTTCATGCTGTTGAGCTCTTAGGTGGCCATGAAAGGGCTACTCCAAAATCAGTTCTTGAACTAATGGATGTGAAGGATCTTACATTAGCACATGTCAAGTCTCACTTACAGATGTATCGGACGGTGAAAACTACAGATAGAGTAGGAGCTTCATCAGGGCAATCTGATGTATACGACAATGGATCATCTGGAGATAATTCTGATGACATAATGTTTGACATCAACTCTTCAAGAAGATCATCTGATTTATCCATTAAGCAGCAAGGAAGATCAAGTGTTAATCAAGATAAGGAATGTTATGGTCTTTGGAGCAACTCTTCTCGGGAAGCTTGGTTACATGGTAAACCAAAGGTTGATTCTATTGGAAACATGCAATCTCTTGAGAAGGAAATGGATCCAAAGTGTCTAAGCTATGAGAGAATATCAGATGGCAGTTCATCTACAAACCTATCAGGATCAAGCCCAAAGAAACCTAATTTGGATTTGGAATTCACCCTAGGCCAACCTCTTTGA
Protein sequence

>Msa0720070

MELFPAQPDLSLQISPPNTKPTTTSNWKRTTTTEEEMDLGFWKRALDSRNSLSSSMASKTDNYSFDLSLSNPTKSLDSNNNTSNNLIHHHHFQNSGNNNANNPYQSFHQNHYFQHPQPLFQHHQPQQQHHQSLSQELGFLRPIRGIPVYQNPPPLSFPQLHNHNHNHNLNHLHILDGATTTPSTISNNNNTSSSPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSIKQQGRSSVNQDKECYGLWSNSSREAWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKPNLDLEFTLGQPL*