AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0843220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0843220 MtrunA17_Chr5g0413871 97.534 365 6 2 1 365 1 362 0.0 734
Msa0843220 MtrunA17_Chr1g0152981 51.185 211 80 5 13 217 11 204 6.07e-70 222
Msa0843220 MtrunA17_Chr2g0317011 38.537 205 99 6 14 218 20 197 5.18e-36 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0843220 AT1G60060.1 69.041 365 63 11 1 337 1 343 2.02e-160 455
Msa0843220 AT1G60060.2 64.688 320 63 11 46 337 6 303 5.40e-124 361
Msa0843220 AT5G53900.2 38.333 240 118 7 14 244 21 239 9.42e-39 142
Msa0843220 AT3G15240.2 37.073 205 107 4 14 218 34 216 1.00e-37 139
Msa0843220 AT5G53900.3 39.844 128 67 2 126 244 1 127 2.69e-20 89.7
Msa0843220 AT5G53900.1 39.844 128 67 2 126 244 1 127 2.69e-20 89.7
Msa0843220 AT2G31280.1 30.928 194 83 9 15 207 6 149 1.78e-14 75.5
Msa0843220 AT2G31280.3 30.928 194 83 9 15 207 6 149 1.88e-14 75.1
Msa0843220 AT2G27230.2 27.488 211 105 8 13 218 4 171 2.94e-13 71.6
Msa0843220 AT2G27230.1 27.488 211 105 8 13 218 4 171 2.94e-13 71.6

Find 101 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAGCTCATCATCAGTTTA+TGG 0.128324 5_4:-20789899 Msa0843220:CDS
ATAAAATAATTAATAATTAT+TGG 0.163550 5_4:+20787961 None:intergenic
CAATCACCGGTGTTTATTTC+AGG 0.209024 5_4:+20789923 None:intergenic
TGCATATTTCAGTTTCTTCT+TGG 0.255252 5_4:-20788178 Msa0843220:three_prime_UTR
TCACATGAGATCTATAACTA+TGG 0.263874 5_4:-20789818 Msa0843220:CDS
CACACATTTGCATGGAATAA+TGG 0.268865 5_4:+20788120 None:intergenic
TTGGGTGGAGGGTAGTTTCT+AGG 0.275012 5_4:+20790398 None:intergenic
AACACAAACACAACATGTTT+TGG 0.280192 5_4:-20788529 Msa0843220:CDS
AGAGAAGGTGTTGTTCAATT+AGG 0.283607 5_4:-20789256 Msa0843220:CDS
AAATTAATTTCTTGATCATT+AGG 0.297602 5_4:+20789634 None:intergenic
AATGGATCAAATAATAATAA+TGG 0.318152 5_4:-20788330 Msa0843220:CDS
TATATGCATGCACAGGATAT+TGG 0.324411 5_4:-20789987 Msa0843220:intron
CATTTCCAAGATGATCTTGA+TGG 0.328838 5_4:+20788349 None:intergenic
AGGATATTGGTTTGGGAAGA+TGG 0.329021 5_4:-20789974 Msa0843220:CDS
TCTTGAAACCCTTTAGCTAT+AGG 0.329720 5_4:+20790630 None:intergenic
ATTGATGGAGTTACTTTCAT+TGG 0.336300 5_4:+20788618 None:intergenic
CATCAAGATCATCTTGGAAA+TGG 0.346285 5_4:-20788348 Msa0843220:CDS
TCAGTTCTTGTCTGGTATAA+AGG 0.362612 5_4:-20789429 Msa0843220:intron
CTAGCTCCTGCTGCTGTTCA+AGG 0.368140 5_4:-20788005 Msa0843220:three_prime_UTR
CAAAGAGCATTGGAATTTAC+CGG 0.375355 5_4:-20788492 Msa0843220:CDS
CCAATCTACCACATTGTACT+TGG 0.379695 5_4:-20788042 Msa0843220:three_prime_UTR
GCATGCACAGGATATTGGTT+TGG 0.384339 5_4:-20789982 Msa0843220:intron
TCACCAACATCAAGTTGTTC+AGG 0.392523 5_4:+20788411 None:intergenic
GACATCTTGAAGAAAAGTTC+AGG 0.396788 5_4:+20789839 None:intergenic
CATGCACAGGATATTGGTTT+GGG 0.400265 5_4:-20789981 Msa0843220:intron
TCATCATCAGCATACCCTTA+TGG 0.403770 5_4:-20788735 Msa0843220:CDS
TAAAGATACCTATAGCTAAA+GGG 0.404162 5_4:-20790638 Msa0843220:five_prime_UTR
GTTGGTGTGTGCTTATATAA+AGG 0.405928 5_4:-20790692 Msa0843220:five_prime_UTR
GCTTCAAGACTACTCATTGA+TGG 0.406362 5_4:+20788603 None:intergenic
TTAAAGATACCTATAGCTAA+AGG 0.409220 5_4:-20790639 Msa0843220:five_prime_UTR
TGGGAAGCTCAGTTCTTGTC+TGG 0.414012 5_4:-20789437 Msa0843220:CDS
CTAGCTCATCATCAGTTTAT+GGG 0.418675 5_4:-20789898 Msa0843220:CDS
CTCTCTCACTACAATATGTT+AGG 0.427654 5_4:+20788246 None:intergenic
TAGGTATCTTTAATAATAGT+AGG 0.427738 5_4:+20790649 None:intergenic
TAAATGTGATATTTCCTTGT+TGG 0.431856 5_4:-20790710 Msa0843220:five_prime_UTR
CATTTCCATCAAGATCATCT+TGG 0.434289 5_4:-20788354 Msa0843220:CDS
TTTACAGCACCCTAGGACTT+GGG 0.440440 5_4:-20789456 Msa0843220:intron
CAAGAGGAAACAGAAGGAAT+TGG 0.444449 5_4:-20790129 Msa0843220:intron
TGTTCTGATGGACCACCATA+AGG 0.450763 5_4:+20788720 None:intergenic
GGTAGTGTATTGTAGTATGA+AGG 0.452877 5_4:-20788157 Msa0843220:three_prime_UTR
ATTGTAGTGAGAGAGTTGTT+AGG 0.462280 5_4:-20788238 Msa0843220:three_prime_UTR
CCAAGTACAATGTGGTAGAT+TGG 0.469859 5_4:+20788042 None:intergenic
GAACAATGGCACAACTTTCA+AGG 0.484632 5_4:-20788702 Msa0843220:CDS
GTTGGATAATGAAGAAGAAG+AGG 0.487343 5_4:-20788442 Msa0843220:CDS
AACTGAGCTTCCCAAGTCCT+AGG 0.490005 5_4:+20789446 None:intergenic
AGCTACATTGAAAGCATACC+AGG 0.501005 5_4:-20788777 Msa0843220:CDS
GTTCTGATGGACCACCATAA+GGG 0.509808 5_4:+20788721 None:intergenic
GAGATCTATAACTATGGAGA+AGG 0.511952 5_4:-20789812 Msa0843220:CDS
TAATATAGGTGGGAAGGACA+AGG 0.515798 5_4:-20790166 Msa0843220:intron
TAAGGGTATGCTGATGATGA+TGG 0.520173 5_4:+20788738 None:intergenic
AAAAGTTGCGAAAGAAGAGT+TGG 0.521509 5_4:-20788460 Msa0843220:CDS
AAGTTGTGCCATTGTTCTGA+TGG 0.534050 5_4:+20788708 None:intergenic
ACAATCTTCACACATTTGCA+TGG 0.536085 5_4:+20788112 None:intergenic
GGAAGAACATCTTACTCCAT+TGG 0.536644 5_4:-20790510 Msa0843220:CDS
CTTGATGGAAATGATGTTGA+TGG 0.536878 5_4:+20788364 None:intergenic
TCAGGTTGAAGACCTTGGTA+AGG 0.540371 5_4:+20789857 None:intergenic
TTGCATCCTTGAACAGCAGC+AGG 0.542861 5_4:+20787999 None:intergenic
CCATAAACTGATGATGAGCT+AGG 0.545039 5_4:+20789899 None:intergenic
ACAACAACAACAAAGAGCAT+TGG 0.547643 5_4:-20788502 Msa0843220:CDS
GGGTGTGGAAGTAGCACTCC+TGG 0.547961 5_4:+20788759 None:intergenic
AAAGTTCAGGTTGAAGACCT+TGG 0.548638 5_4:+20789852 None:intergenic
GTGCTTATATAAAGGAGGAT+AGG 0.553115 5_4:-20790684 Msa0843220:five_prime_UTR
AAATTAATTTCTTGTCAGCA+TGG 0.554884 5_4:-20789621 Msa0843220:CDS
ACCTTCTCTAACAGCAATGA+GGG 0.566133 5_4:+20789270 None:intergenic
GAGAGTAGTAGTTCAATACC+AGG 0.567679 5_4:-20788390 Msa0843220:CDS
CACCCACCTAAATAAAATGA+GGG 0.571153 5_4:-20790743 None:intergenic
AGAAGATGAGTAACAGCCAA+TGG 0.572438 5_4:+20790494 None:intergenic
GTAGTGTATTGTAGTATGAA+GGG 0.572719 5_4:-20788156 Msa0843220:three_prime_UTR
AGGTATCTTTAATAATAGTA+GGG 0.573912 5_4:+20790650 None:intergenic
CTGCAGATCATAGTCACAAG+TGG 0.577564 5_4:-20789669 Msa0843220:CDS
ACAGCAGCAGGAGCTAGCAT+TGG 0.582155 5_4:+20788011 None:intergenic
TATGCTGATGATGATGGGTG+TGG 0.582762 5_4:+20788744 None:intergenic
AATATAGGTGGGAAGGACAA+GGG 0.583406 5_4:-20790165 Msa0843220:intron
ACTGAGCTTCCCAAGTCCTA+GGG 0.584163 5_4:+20789447 None:intergenic
CATCCATGAAAATTCTCAGT+GGG 0.589081 5_4:-20790447 Msa0843220:CDS
CACCTTCTCTAACAGCAATG+AGG 0.591099 5_4:+20789269 None:intergenic
GGGGCTTATGATAGATCAAG+AGG 0.592698 5_4:-20790145 Msa0843220:CDS
GCCCTCATTGCTGTTAGAGA+AGG 0.593948 5_4:-20789271 Msa0843220:CDS
AGCATTGCACCACAGCATCA+AGG 0.600171 5_4:-20788678 Msa0843220:CDS
ATATAGGTGGGAAGGACAAG+GGG 0.604756 5_4:-20790164 Msa0843220:intron
TGTTGTGGTGGAACAACTGA+AGG 0.615956 5_4:+20788564 None:intergenic
AGATCTATAACTATGGAGAA+GGG 0.626888 5_4:-20789811 Msa0843220:intron
TCAATTAGGAGCTGTTCACA+AGG 0.628502 5_4:-20789242 Msa0843220:intron
ATAGATCAAGAGGAAACAGA+AGG 0.628702 5_4:-20790135 Msa0843220:CDS
TGTGTATAATATAGGTGGGA+AGG 0.629661 5_4:-20790172 Msa0843220:intron
AAGGGTATGCTGATGATGAT+GGG 0.632300 5_4:+20788739 None:intergenic
TGATGAGCTAGGACAATCAC+CGG 0.633783 5_4:+20789910 None:intergenic
AATTGATCACCTTGATGCTG+TGG 0.645054 5_4:+20788669 None:intergenic
AGACCTGAACAACTTGATGT+TGG 0.656658 5_4:-20788414 Msa0843220:CDS
TATATAAGCACACACCAACA+AGG 0.657069 5_4:+20790696 None:intergenic
ATGGTGGTCCATCAGAACAA+TGG 0.666115 5_4:-20788716 Msa0843220:CDS
GATTGAAGACTTGAGCTATG+TGG 0.668398 5_4:-20788820 Msa0843220:CDS
GGTGTGTGCTTATATAAAGG+AGG 0.669304 5_4:-20790689 Msa0843220:five_prime_UTR
TCATCAGCATACCCTTATGG+TGG 0.673613 5_4:-20788732 Msa0843220:CDS
AAATGATGTTGATGGTACCC+TGG 0.680740 5_4:+20788372 None:intergenic
GAACTAATTCAACCTTACCA+AGG 0.681689 5_4:-20789869 Msa0843220:CDS
ACCCACCTAAATAAAATGAG+GGG 0.695884 5_4:-20790742 None:intergenic
GCATCCATGAAAATTCTCAG+TGG 0.713658 5_4:-20790448 Msa0843220:CDS
AGAGTAGTAGTTCAATACCA+GGG 0.726230 5_4:-20788389 Msa0843220:CDS
GCAGCACCTGAAATAAACAC+CGG 0.739013 5_4:-20789929 Msa0843220:CDS
ATGTTGATCCAAGTACAATG+TGG 0.823704 5_4:+20788034 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAATTAATAATTAT+TGG + chr5_4:20790688-20790707 None:intergenic 0.0%
!!! TGAGAATTTTATTTTATATA+TGG - chr5_4:20788115-20788134 Msa0843220:three_prime_UTR 10.0%
!! ACTTGATTATAAAAAAAAAA+TGG - chr5_4:20788568-20788587 Msa0843220:CDS 10.0%
!!! TATTAGTTAATTAGATTTTA+TGG - chr5_4:20788932-20788951 Msa0843220:intron 10.0%
!! AATTGAATTAAATTAAAGAA+AGG + chr5_4:20789327-20789346 None:intergenic 10.0%
!! AAATTAATTTCTTGATCATT+AGG + chr5_4:20789015-20789034 None:intergenic 15.0%
!! AATGGATCAAATAATAATAA+TGG - chr5_4:20790316-20790335 Msa0843220:intron 15.0%
!! AGGTATCTTTAATAATAGTA+GGG + chr5_4:20787999-20788018 None:intergenic 20.0%
!! TAGGTATCTTTAATAATAGT+AGG + chr5_4:20788000-20788019 None:intergenic 20.0%
!!! ATTTTGTGTGTGTATAATAT+AGG - chr5_4:20788466-20788485 Msa0843220:CDS 20.0%
!!! GAAGTTTTATTTAAGCAAAT+AGG - chr5_4:20788907-20788926 Msa0843220:intron 20.0%
!! CTGGTAATAATTTAAGAAAA+TGG + chr5_4:20789598-20789617 None:intergenic 20.0%
!!! AATGTTTTAAGAAAAATGTC+CGG + chr5_4:20789738-20789757 None:intergenic 20.0%
! TAAATGTGATATTTCCTTGT+TGG - chr5_4:20787936-20787955 Msa0843220:three_prime_UTR 25.0%
! TTAAAGATACCTATAGCTAA+AGG - chr5_4:20788007-20788026 Msa0843220:three_prime_UTR 25.0%
! TAAAGATACCTATAGCTAAA+GGG - chr5_4:20788008-20788027 Msa0843220:three_prime_UTR 25.0%
!! TTGCTATGATTTTCTTACTT+GGG + chr5_4:20788269-20788288 None:intergenic 25.0%
!!! TTTGCTATGATTTTCTTACT+TGG + chr5_4:20788270-20788289 None:intergenic 25.0%
!! TTAATTAGATTTTATGGAGC+AGG - chr5_4:20788938-20788957 Msa0843220:intron 25.0%
! AAATTAATTTCTTGTCAGCA+TGG - chr5_4:20789025-20789044 Msa0843220:intron 25.0%
! GAAATCATTCTATCTATTTC+AGG + chr5_4:20789169-20789188 None:intergenic 25.0%
!!! ATGTTTTAAGAAAAATGTCC+GGG + chr5_4:20789737-20789756 None:intergenic 25.0%
!! TCAATCAAATTTTGTCTCTA+TGG - chr5_4:20789793-20789812 Msa0843220:intron 25.0%
!! TTTTGTCTCTATGGAATTTA+AGG - chr5_4:20789802-20789821 Msa0843220:intron 25.0%
!!! GTTTGATTTTGAATTTGTTG+TGG + chr5_4:20790100-20790119 None:intergenic 25.0%
TTGTGTGTGTATAATATAGG+TGG - chr5_4:20788469-20788488 Msa0843220:CDS 30.0%
TGTGTGTGTATAATATAGGT+GGG - chr5_4:20788470-20788489 Msa0843220:CDS 30.0%
TCACATGAGATCTATAACTA+TGG - chr5_4:20788828-20788847 Msa0843220:intron 30.0%
AGATCTATAACTATGGAGAA+GGG - chr5_4:20788835-20788854 Msa0843220:intron 30.0%
GAGATATACTATGTGAATGA+GGG + chr5_4:20789277-20789296 None:intergenic 30.0%
AGAGATATACTATGTGAATG+AGG + chr5_4:20789278-20789297 None:intergenic 30.0%
! TTTCAGATTTAAGACGTGTT+TGG - chr5_4:20789507-20789526 Msa0843220:intron 30.0%
!!! TGTAGCTGAACTTTTTTCTT+AGG + chr5_4:20789856-20789875 None:intergenic 30.0%
! ATTGATGGAGTTACTTTCAT+TGG + chr5_4:20790031-20790050 None:intergenic 30.0%
!!! TGATTTTGAATTTGTTGTGG+TGG + chr5_4:20790097-20790116 None:intergenic 30.0%
! AACACAAACACAACATGTTT+TGG - chr5_4:20790117-20790136 Msa0843220:intron 30.0%
TGCATATTTCAGTTTCTTCT+TGG - chr5_4:20790468-20790487 Msa0843220:CDS 30.0%
GTAGTGTATTGTAGTATGAA+GGG - chr5_4:20790490-20790509 Msa0843220:CDS 30.0%
TATATAAGCACACACCAACA+AGG + chr5_4:20787953-20787972 None:intergenic 35.0%
GTTGGTGTGTGCTTATATAA+AGG - chr5_4:20787954-20787973 Msa0843220:three_prime_UTR 35.0%
GTGCTTATATAAAGGAGGAT+AGG - chr5_4:20787962-20787981 Msa0843220:three_prime_UTR 35.0%
TCTTGAAACCCTTTAGCTAT+AGG + chr5_4:20788019-20788038 None:intergenic 35.0%
CATCCATGAAAATTCTCAGT+GGG - chr5_4:20788199-20788218 Msa0843220:three_prime_UTR 35.0%
! AAACCCACTGAGAATTTTCA+TGG + chr5_4:20788205-20788224 None:intergenic 35.0%
! CTATGATTTTCTTACTTGGG+TGG + chr5_4:20788266-20788285 None:intergenic 35.0%
TGTGTATAATATAGGTGGGA+AGG - chr5_4:20788474-20788493 Msa0843220:CDS 35.0%
ATAGATCAAGAGGAAACAGA+AGG - chr5_4:20788511-20788530 Msa0843220:CDS 35.0%
TCTATGTTATATGCATGCAC+AGG - chr5_4:20788652-20788671 Msa0843220:CDS 35.0%
TATATGCATGCACAGGATAT+TGG - chr5_4:20788659-20788678 Msa0843220:CDS 35.0%
CTAGCTCATCATCAGTTTAT+GGG - chr5_4:20788748-20788767 Msa0843220:CDS 35.0%
GAACTAATTCAACCTTACCA+AGG - chr5_4:20788777-20788796 Msa0843220:CDS 35.0%
GACATCTTGAAGAAAAGTTC+AGG + chr5_4:20788810-20788829 None:intergenic 35.0%
GAGATCTATAACTATGGAGA+AGG - chr5_4:20788834-20788853 Msa0843220:intron 35.0%
!!! ATTTTATGGAGCAGGTTGAT+TGG - chr5_4:20788946-20788965 Msa0843220:intron 35.0%
TCAGTTCTTGTCTGGTATAA+AGG - chr5_4:20789217-20789236 Msa0843220:intron 35.0%
!! AGAGAAGGTGTTGTTCAATT+AGG - chr5_4:20789390-20789409 Msa0843220:intron 35.0%
ACCAGTATTAGTGTTGTGTT+CGG - chr5_4:20789613-20789632 Msa0843220:CDS 35.0%
AACCACAATCATGTTGCAAT+CGG - chr5_4:20789671-20789690 Msa0843220:CDS 35.0%
! ACAACAACAACAAAGAGCAT+TGG - chr5_4:20790144-20790163 Msa0843220:CDS 35.0%
!! CAAAGAGCATTGGAATTTAC+CGG - chr5_4:20790154-20790173 Msa0843220:CDS 35.0%
AAAAGTTGCGAAAGAAGAGT+TGG - chr5_4:20790186-20790205 Msa0843220:intron 35.0%
GTTGGATAATGAAGAAGAAG+AGG - chr5_4:20790204-20790223 Msa0843220:intron 35.0%
AGAGTAGTAGTTCAATACCA+GGG - chr5_4:20790257-20790276 Msa0843220:intron 35.0%
CTTGATGGAAATGATGTTGA+TGG + chr5_4:20790285-20790304 None:intergenic 35.0%
CATTTCCATCAAGATCATCT+TGG - chr5_4:20790292-20790311 Msa0843220:intron 35.0%
CATTTCCAAGATGATCTTGA+TGG + chr5_4:20790300-20790319 None:intergenic 35.0%
CATCAAGATCATCTTGGAAA+TGG - chr5_4:20790298-20790317 Msa0843220:intron 35.0%
CTCTCTCACTACAATATGTT+AGG + chr5_4:20790403-20790422 None:intergenic 35.0%
ATTGTAGTGAGAGAGTTGTT+AGG - chr5_4:20790408-20790427 Msa0843220:CDS 35.0%
GGTAGTGTATTGTAGTATGA+AGG - chr5_4:20790489-20790508 Msa0843220:CDS 35.0%
CACACATTTGCATGGAATAA+TGG + chr5_4:20790529-20790548 None:intergenic 35.0%
ACAATCTTCACACATTTGCA+TGG + chr5_4:20790537-20790556 None:intergenic 35.0%
ATGTTGATCCAAGTACAATG+TGG + chr5_4:20790615-20790634 None:intergenic 35.0%
GGTGTGTGCTTATATAAAGG+AGG - chr5_4:20787957-20787976 Msa0843220:three_prime_UTR 40.0%
GGAAGAACATCTTACTCCAT+TGG - chr5_4:20788136-20788155 Msa0843220:three_prime_UTR 40.0%
AGAAGATGAGTAACAGCCAA+TGG + chr5_4:20788155-20788174 None:intergenic 40.0%
GCATCCATGAAAATTCTCAG+TGG - chr5_4:20788198-20788217 Msa0843220:three_prime_UTR 40.0%
!!! AGTGGGTTTATGCTGTTTTC+TGG - chr5_4:20788216-20788235 Msa0843220:three_prime_UTR 40.0%
! GATTTTCTTACTTGGGTGGA+GGG + chr5_4:20788262-20788281 None:intergenic 40.0%
! TGATTTTCTTACTTGGGTGG+AGG + chr5_4:20788263-20788282 None:intergenic 40.0%
TAATATAGGTGGGAAGGACA+AGG - chr5_4:20788480-20788499 Msa0843220:CDS 40.0%
AATATAGGTGGGAAGGACAA+GGG - chr5_4:20788481-20788500 Msa0843220:CDS 40.0%
CAAGAGGAAACAGAAGGAAT+TGG - chr5_4:20788517-20788536 Msa0843220:CDS 40.0%
!! CATGCACAGGATATTGGTTT+GGG - chr5_4:20788665-20788684 Msa0843220:CDS 40.0%
!! AGGATATTGGTTTGGGAAGA+TGG - chr5_4:20788672-20788691 Msa0843220:CDS 40.0%
CAATCACCGGTGTTTATTTC+AGG + chr5_4:20788726-20788745 None:intergenic 40.0%
! CCATAAACTGATGATGAGCT+AGG + chr5_4:20788750-20788769 None:intergenic 40.0%
CCTAGCTCATCATCAGTTTA+TGG - chr5_4:20788747-20788766 Msa0843220:CDS 40.0%
!! AAAGTTCAGGTTGAAGACCT+TGG + chr5_4:20788797-20788816 None:intergenic 40.0%
! GATTTCTTTTACAGCACCCT+AGG - chr5_4:20789183-20789202 Msa0843220:intron 40.0%
ACCTTCTCTAACAGCAATGA+GGG + chr5_4:20789379-20789398 None:intergenic 40.0%
TCAATTAGGAGCTGTTCACA+AGG - chr5_4:20789404-20789423 Msa0843220:intron 40.0%
AGAGAGAGAGAGAGAACAAA+GGG + chr5_4:20789441-20789460 None:intergenic 40.0%
! TTTAAGACGTGTTTGGAGTC+CGG - chr5_4:20789514-20789533 Msa0843220:intron 40.0%
TGTTAGACACCAATGTAAGC+CGG + chr5_4:20789536-20789555 None:intergenic 40.0%
ACCGAACACAACACTAATAC+TGG + chr5_4:20789617-20789636 None:intergenic 40.0%
GGTGCTTGTATGTGTTTCAT+AGG - chr5_4:20789634-20789653 Msa0843220:CDS 40.0%
GATTGAAGACTTGAGCTATG+TGG - chr5_4:20789826-20789845 Msa0843220:CDS 40.0%
! AGCTACATTGAAAGCATACC+AGG - chr5_4:20789869-20789888 Msa0843220:CDS 40.0%
! AAGGGTATGCTGATGATGAT+GGG + chr5_4:20789910-20789929 None:intergenic 40.0%
! TAAGGGTATGCTGATGATGA+TGG + chr5_4:20789911-20789930 None:intergenic 40.0%
TCATCATCAGCATACCCTTA+TGG - chr5_4:20789911-20789930 Msa0843220:CDS 40.0%
! AAGTTGTGCCATTGTTCTGA+TGG + chr5_4:20789941-20789960 None:intergenic 40.0%
GAACAATGGCACAACTTTCA+AGG - chr5_4:20789944-20789963 Msa0843220:CDS 40.0%
AATTGATCACCTTGATGCTG+TGG + chr5_4:20789980-20789999 None:intergenic 40.0%
GCTTCAAGACTACTCATTGA+TGG + chr5_4:20790046-20790065 None:intergenic 40.0%
! CGCAACTTTTTGCATTCTTC+CGG + chr5_4:20790176-20790195 None:intergenic 40.0%
AGACCTGAACAACTTGATGT+TGG - chr5_4:20790232-20790251 Msa0843220:intron 40.0%
! TCACCAACATCAAGTTGTTC+AGG + chr5_4:20790238-20790257 None:intergenic 40.0%
GAGAGTAGTAGTTCAATACC+AGG - chr5_4:20790256-20790275 Msa0843220:intron 40.0%
!! AAATGATGTTGATGGTACCC+TGG + chr5_4:20790277-20790296 None:intergenic 40.0%
CCAAGTACAATGTGGTAGAT+TGG + chr5_4:20790607-20790626 None:intergenic 40.0%
CCAATCTACCACATTGTACT+TGG - chr5_4:20790604-20790623 Msa0843220:five_prime_UTR 40.0%
!!! GGGTTTATGCTGTTTTCTGG+AGG - chr5_4:20788219-20788238 Msa0843220:three_prime_UTR 45.0%
ATATAGGTGGGAAGGACAAG+GGG - chr5_4:20788482-20788501 Msa0843220:CDS 45.0%
GGGGCTTATGATAGATCAAG+AGG - chr5_4:20788501-20788520 Msa0843220:CDS 45.0%
! GCATGCACAGGATATTGGTT+TGG - chr5_4:20788664-20788683 Msa0843220:CDS 45.0%
GCAGCACCTGAAATAAACAC+CGG - chr5_4:20788717-20788736 Msa0843220:CDS 45.0%
TGATGAGCTAGGACAATCAC+CGG + chr5_4:20788739-20788758 None:intergenic 45.0%
!! TCAGGTTGAAGACCTTGGTA+AGG + chr5_4:20788792-20788811 None:intergenic 45.0%
CTGCAGATCATAGTCACAAG+TGG - chr5_4:20788977-20788996 Msa0843220:intron 45.0%
! TTTTACAGCACCCTAGGACT+TGG - chr5_4:20789189-20789208 Msa0843220:intron 45.0%
TTTACAGCACCCTAGGACTT+GGG - chr5_4:20789190-20789209 Msa0843220:intron 45.0%
CACCTTCTCTAACAGCAATG+AGG + chr5_4:20789380-20789399 None:intergenic 45.0%
GAGAGAGAGAGAGAGAACAA+AGG + chr5_4:20789442-20789461 None:intergenic 45.0%
CTCCGATTGCAACATGATTG+TGG + chr5_4:20789676-20789695 None:intergenic 45.0%
TCATAGATCAGTCGCATTCC+CGG - chr5_4:20789716-20789735 Msa0843220:intron 45.0%
!! TATGCTGATGATGATGGGTG+TGG + chr5_4:20789905-20789924 None:intergenic 45.0%
TCATCAGCATACCCTTATGG+TGG - chr5_4:20789914-20789933 Msa0843220:CDS 45.0%
! GTTCTGATGGACCACCATAA+GGG + chr5_4:20789928-20789947 None:intergenic 45.0%
! TGTTCTGATGGACCACCATA+AGG + chr5_4:20789929-20789948 None:intergenic 45.0%
ATGGTGGTCCATCAGAACAA+TGG - chr5_4:20789930-20789949 Msa0843220:CDS 45.0%
! TGTTGTGGTGGAACAACTGA+AGG + chr5_4:20790085-20790104 None:intergenic 45.0%
!! TATATATATATATATATATG+AGG - chr5_4:20788373-20788392 Msa0843220:CDS 5.0%
TTGGGTGGAGGGTAGTTTCT+AGG + chr5_4:20788251-20788270 None:intergenic 50.0%
ACTGAGCTTCCCAAGTCCTA+GGG + chr5_4:20789202-20789221 None:intergenic 50.0%
AACTGAGCTTCCCAAGTCCT+AGG + chr5_4:20789203-20789222 None:intergenic 50.0%
TGGGAAGCTCAGTTCTTGTC+TGG - chr5_4:20789209-20789228 Msa0843220:intron 50.0%
! GCCCTCATTGCTGTTAGAGA+AGG - chr5_4:20789375-20789394 Msa0843220:intron 50.0%
! GTTTGGAGTCCGGCTTACAT+TGG - chr5_4:20789524-20789543 Msa0843220:intron 50.0%
AGCATTGCACCACAGCATCA+AGG - chr5_4:20789968-20789987 Msa0843220:CDS 50.0%
TTGCATCCTTGAACAGCAGC+AGG + chr5_4:20790650-20790669 None:intergenic 50.0%
ACAGCAGCAGGAGCTAGCAT+TGG + chr5_4:20790638-20790657 None:intergenic 55.0%
CTAGCTCCTGCTGCTGTTCA+AGG - chr5_4:20790641-20790660 Msa0843220:five_prime_UTR 55.0%
GGGTGTGGAAGTAGCACTCC+TGG + chr5_4:20789890-20789909 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 20787918 20790750 20787918 ID=Msa0843220;Name=Msa0843220
chr5_4 mRNA 20787918 20790750 20787918 ID=Msa0843220-mRNA-1;Parent=Msa0843220;Name=Msa0843220-mRNA-1;_AED=0.16;_eAED=0.16;_QI=216|1|1|1|1|1|7|405|365
chr5_4 exon 20787918 20788844 20787918 ID=Msa0843220-mRNA-1:exon:8638;Parent=Msa0843220-mRNA-1
chr5_4 exon 20789243 20789299 20789243 ID=Msa0843220-mRNA-1:exon:8637;Parent=Msa0843220-mRNA-1
chr5_4 exon 20789430 20789471 20789430 ID=Msa0843220-mRNA-1:exon:8636;Parent=Msa0843220-mRNA-1
chr5_4 exon 20789603 20789708 20789603 ID=Msa0843220-mRNA-1:exon:8635;Parent=Msa0843220-mRNA-1
chr5_4 exon 20789812 20789994 20789812 ID=Msa0843220-mRNA-1:exon:8634;Parent=Msa0843220-mRNA-1
chr5_4 exon 20790130 20790180 20790130 ID=Msa0843220-mRNA-1:exon:8633;Parent=Msa0843220-mRNA-1
chr5_4 exon 20790398 20790750 20790398 ID=Msa0843220-mRNA-1:exon:8632;Parent=Msa0843220-mRNA-1
chr5_4 five_prime_UTR 20790535 20790750 20790535 ID=Msa0843220-mRNA-1:five_prime_utr;Parent=Msa0843220-mRNA-1
chr5_4 CDS 20790398 20790534 20790398 ID=Msa0843220-mRNA-1:cds;Parent=Msa0843220-mRNA-1
chr5_4 CDS 20790130 20790180 20790130 ID=Msa0843220-mRNA-1:cds;Parent=Msa0843220-mRNA-1
chr5_4 CDS 20789812 20789994 20789812 ID=Msa0843220-mRNA-1:cds;Parent=Msa0843220-mRNA-1
chr5_4 CDS 20789603 20789708 20789603 ID=Msa0843220-mRNA-1:cds;Parent=Msa0843220-mRNA-1
chr5_4 CDS 20789430 20789471 20789430 ID=Msa0843220-mRNA-1:cds;Parent=Msa0843220-mRNA-1
chr5_4 CDS 20789243 20789299 20789243 ID=Msa0843220-mRNA-1:cds;Parent=Msa0843220-mRNA-1
chr5_4 CDS 20788323 20788844 20788323 ID=Msa0843220-mRNA-1:cds;Parent=Msa0843220-mRNA-1
chr5_4 three_prime_UTR 20787918 20788322 20787918 ID=Msa0843220-mRNA-1:three_prime_utr;Parent=Msa0843220-mRNA-1
Gene Sequence

>Msa0843220

ATGGAAGAACATCTTACTCCATTGGCTGTTACTCATCTTCTTCAACACACTCTAAGAAGTTTGTGCATCCATGAAAATTCTCAGTGGGTTTATGCTGTTTTCTGGAGGATCTTGCCTAGAAACTACCCTCCACCCAAGTGGGAAGGACAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGGATATTGGTTTGGGAAGATGGATTCTGCAATTTTGCAGCATCAGCAGCACCTGAAATAAACACCGGTGATTGTCCTAGCTCATCATCAGTTTATGGGAACTGTGAACTAATTCAACCTTACCAAGGTCTTCAACCTGAACTTTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGGTTGATTGGAAAAGTAGCTGCAGATCATAGTCACAAGTGGATATACAAAGAACCTAATGATCAAGAAATTAATTTCTTGTCAGCATGGCATAATTCAGCAGACTCACACCCTAGGACTTGGGAAGCTCAGTTCTTGTCTGGTATAAAGACTATAGCCCTCATTGCTGTTAGAGAAGGTGTTGTTCAATTAGGAGCTGTTCACAAGGTGATTGAAGACTTGAGCTATGTGGTTCTCCTAAGAAAAAAGTTCAGCTACATTGAAAGCATACCAGGAGTGCTACTTCCACACCCATCATCATCAGCATACCCTTATGGTGGTCCATCAGAACAATGGCACAACTTTCAAGGAAGCATTGCACCACAGCATCAAGGTGATCAATTATATCATGAACATTTCAACAACATTATGCCAATGAAAGTAACTCCATCAATGAGTAGTCTTGAAGCATTACTCTCTAAACTACCTTCAGTTGTTCCACCACAACAAATTCAAAATCAAACACAAACACAACATGTTTTGGCAACACAACAACAACAAAGAGCATTGGAATTTACCGGAAGAATGCAAAAAGTTGCGAAAGAAGAGTTGGATAATGAAGAAGAAGAGGTATATAGACCTGAACAACTTGATGTTGGTGAGAGTAGTAGTTCAATACCAGGGTACCATCAACATCATTTCCATCAAGATCATCTTGGAAATGGATCAAATAATAATAATGGATTTTGA

Protein sequence

>Msa0843220

MEEHLTPLAVTHLLQHTLRSLCIHENSQWVYAVFWRILPRNYPPPKWEGQGAYDRSRGNRRNWILVWEDGFCNFAASAAPEINTGDCPSSSSVYGNCELIQPYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNSADSHPRTWEAQFLSGIKTIALIAVREGVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYPYGGPSEQWHNFQGSIAPQHQGDQLYHEHFNNIMPMKVTPSMSSLEALLSKLPSVVPPQQIQNQTQTQHVLATQQQQRALEFTGRMQKVAKEELDNEEEEVYRPEQLDVGESSSSIPGYHQHHFHQDHLGNGSNNNNGF*