Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246260 | XP_003595308.1 | 99.234 | 261 | 2 | 0 | 22 | 282 | 249 | 509 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246260 | sp|P25795|AL7A1_PEA | 90.805 | 261 | 24 | 0 | 22 | 282 | 248 | 508 | 8.83e-173 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246260 | G7IGF7 | 99.234 | 261 | 2 | 0 | 22 | 282 | 249 | 509 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043980 | Msa0246260 | 0.814195 | 1.743527e-51 | -8.615850e-47 |
| Msa0058490 | Msa0246260 | 0.804813 | 1.803879e-49 | -8.615850e-47 |
| Msa0058510 | Msa0246260 | 0.805281 | 1.440174e-49 | -8.615850e-47 |
| Msa0203110 | Msa0246260 | 0.817578 | 3.066984e-52 | -8.615850e-47 |
| Msa0246250 | Msa0246260 | 0.822306 | 2.542391e-53 | -8.615850e-47 |
| Msa0246260 | Msa0287410 | 0.829647 | 4.579883e-55 | -8.615850e-47 |
| Msa0246260 | Msa0323560 | 0.852581 | 4.203932e-61 | -8.615850e-47 |
| Msa0246260 | Msa0433360 | 0.802275 | 6.059987e-49 | -8.615850e-47 |
| Msa0246260 | Msa0469990 | 0.854626 | 1.086002e-61 | -8.615850e-47 |
| Msa0246260 | Msa0474990 | 0.818438 | 1.959875e-52 | -8.615850e-47 |
| Msa0246260 | Msa0485340 | 0.807121 | 5.900926e-50 | -8.615850e-47 |
| Msa0246260 | Msa0724780 | 0.812683 | 3.746619e-51 | -8.615850e-47 |
| Msa0246260 | Msa0732880 | 0.815420 | 9.330079e-52 | -8.615850e-47 |
| Msa0246260 | Msa0771720 | 0.804958 | 1.682610e-49 | -8.615850e-47 |
| Msa0246260 | Msa0877410 | 0.809553 | 1.787739e-50 | -8.615850e-47 |
| Msa0246260 | Msa0894930 | 0.801615 | 8.280829e-49 | -8.615850e-47 |
| Msa0246260 | Msa0974930 | 0.801095 | 1.058490e-48 | -8.615850e-47 |
| Msa0246260 | Msa1023180 | 0.809691 | 1.669609e-50 | -8.615850e-47 |
| Msa0246260 | Msa1043050 | 0.806102 | 9.684028e-50 | -8.615850e-47 |
| Msa0246260 | Msa1174040 | 0.811554 | 6.607022e-51 | -8.615850e-47 |
| Msa0246260 | Msa1190930 | 0.802274 | 6.064690e-49 | -8.615850e-47 |
| Msa0246260 | Msa1250530 | 0.821044 | 4.977608e-53 | -8.615850e-47 |
| Msa0246260 | Msa1305660 | 0.806491 | 8.017834e-50 | -8.615850e-47 |
| Msa0246260 | Msa1329550 | 0.804584 | 2.013994e-49 | -8.615850e-47 |
| Msa0246260 | Msa1466730 | 0.811046 | 8.513851e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246260 | MtrunA17_Chr2g0300801 | 99.234 | 261 | 2 | 0 | 22 | 282 | 249 | 509 | 0.0 | 530 |
| Msa0246260 | MtrunA17_Chr8g0390651 | 33.594 | 256 | 162 | 7 | 20 | 271 | 249 | 500 | 5.39e-33 | 126 |
| Msa0246260 | MtrunA17_Chr4g0059521 | 33.588 | 262 | 154 | 7 | 19 | 274 | 246 | 493 | 1.59e-32 | 125 |
| Msa0246260 | MtrunA17_Chr3g0118081 | 30.258 | 271 | 167 | 6 | 3 | 260 | 249 | 510 | 2.18e-32 | 124 |
| Msa0246260 | MtrunA17_Chr3g0118121 | 30.943 | 265 | 173 | 5 | 3 | 260 | 219 | 480 | 2.57e-31 | 121 |
| Msa0246260 | MtrunA17_Chr8g0365221 | 34.667 | 225 | 141 | 4 | 39 | 261 | 307 | 527 | 4.53e-28 | 112 |
| Msa0246260 | MtrunA17_Chr2g0310091 | 29.070 | 258 | 173 | 5 | 9 | 260 | 271 | 524 | 6.37e-28 | 112 |
| Msa0246260 | MtrunA17_Chr3g0117861 | 32.143 | 224 | 148 | 3 | 39 | 261 | 308 | 528 | 2.87e-27 | 110 |
| Msa0246260 | MtrunA17_Chr8g0390631 | 30.522 | 249 | 166 | 6 | 26 | 271 | 247 | 491 | 3.05e-26 | 107 |
| Msa0246260 | MtrunA17_Chr6g0485301 | 30.126 | 239 | 154 | 6 | 39 | 271 | 268 | 499 | 8.33e-26 | 106 |
| Msa0246260 | MtrunA17_Chr4g0059221 | 31.641 | 256 | 160 | 6 | 15 | 261 | 281 | 530 | 3.14e-25 | 104 |
| Msa0246260 | MtrunA17_Chr6g0485311 | 29.412 | 238 | 157 | 5 | 39 | 271 | 266 | 497 | 1.20e-21 | 94.4 |
| Msa0246260 | MtrunA17_Chr2g0294411 | 28.099 | 242 | 160 | 5 | 22 | 254 | 280 | 516 | 9.13e-20 | 89.0 |
| Msa0246260 | MtrunA17_Chr4g0074171 | 27.660 | 235 | 161 | 7 | 39 | 271 | 263 | 490 | 1.33e-16 | 79.3 |
| Msa0246260 | MtrunA17_Chr1g0149961 | 27.586 | 232 | 159 | 7 | 39 | 268 | 263 | 487 | 4.62e-16 | 77.8 |
| Msa0246260 | MtrunA17_Chr4g0049641 | 29.302 | 215 | 140 | 5 | 41 | 248 | 286 | 495 | 7.27e-15 | 74.3 |
| Msa0246260 | MtrunA17_Chr2g0279751 | 26.977 | 215 | 145 | 5 | 41 | 248 | 259 | 468 | 3.45e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246260 | AT1G54100.2 | 82.375 | 261 | 46 | 0 | 22 | 282 | 248 | 508 | 8.42e-157 | 447 |
| Msa0246260 | AT1G54100.1 | 82.375 | 261 | 46 | 0 | 22 | 282 | 248 | 508 | 8.42e-157 | 447 |
| Msa0246260 | AT1G74920.2 | 32.824 | 262 | 156 | 7 | 19 | 274 | 241 | 488 | 3.40e-33 | 127 |
| Msa0246260 | AT1G74920.1 | 32.824 | 262 | 156 | 7 | 19 | 274 | 246 | 493 | 4.46e-33 | 127 |
| Msa0246260 | AT3G48170.1 | 31.618 | 272 | 169 | 7 | 13 | 274 | 229 | 493 | 1.39e-31 | 122 |
| Msa0246260 | AT3G24503.1 | 29.630 | 243 | 167 | 3 | 26 | 267 | 254 | 493 | 2.86e-31 | 122 |
| Msa0246260 | AT1G79440.1 | 29.615 | 260 | 169 | 5 | 9 | 260 | 262 | 515 | 3.09e-28 | 113 |
| Msa0246260 | AT1G23800.1 | 32.159 | 227 | 144 | 5 | 39 | 261 | 300 | 520 | 2.11e-27 | 111 |
| Msa0246260 | AT3G48000.1 | 31.064 | 235 | 152 | 5 | 31 | 261 | 296 | 524 | 3.53e-26 | 107 |
| Msa0246260 | AT3G66658.2 | 26.141 | 241 | 164 | 5 | 21 | 252 | 279 | 514 | 6.11e-20 | 89.7 |
| Msa0246260 | AT3G66658.1 | 26.141 | 241 | 164 | 5 | 21 | 252 | 279 | 514 | 6.44e-20 | 89.7 |
| Msa0246260 | AT2G24270.2 | 26.293 | 232 | 162 | 6 | 39 | 268 | 303 | 527 | 3.50e-16 | 78.6 |
| Msa0246260 | AT2G24270.4 | 26.293 | 232 | 162 | 6 | 39 | 268 | 263 | 487 | 3.81e-16 | 78.6 |
| Msa0246260 | AT2G24270.3 | 26.293 | 232 | 162 | 6 | 39 | 268 | 263 | 487 | 4.22e-16 | 78.6 |
| Msa0246260 | AT2G24270.1 | 26.293 | 232 | 162 | 6 | 39 | 268 | 263 | 487 | 4.22e-16 | 78.6 |
| Msa0246260 | AT1G44170.3 | 22.177 | 248 | 183 | 4 | 22 | 265 | 137 | 378 | 3.09e-11 | 63.9 |
| Msa0246260 | AT1G44170.1 | 22.314 | 242 | 184 | 4 | 22 | 262 | 200 | 438 | 3.63e-11 | 63.5 |
| Msa0246260 | AT1G44170.2 | 22.314 | 242 | 184 | 4 | 22 | 262 | 200 | 438 | 3.63e-11 | 63.5 |
Find 76 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTACAAACAAGTCAAAAT+TGG | 0.151745 | 2_2:+27355957 | Msa0246260:CDS |
| TCTCTATGTTATGAAATTTC+AGG | 0.212346 | 2_2:+27356354 | Msa0246260:CDS |
| AATTCCTGTCGCAACCTTCT+AGG | 0.277109 | 2_2:+27355482 | Msa0246260:CDS |
| AAGATTTGGCAAATGCTTAC+TGG | 0.283996 | 2_2:+27355667 | Msa0246260:CDS |
| TTGTGCAGTACTATCAATTA+TGG | 0.306460 | 2_2:+27356985 | Msa0246260:intron |
| ATCCATTTGAATATTGTATC+AGG | 0.351605 | 2_2:-27356532 | None:intergenic |
| TGGAGAAAGGGACTCTGGTT+GGG | 0.353211 | 2_2:+27355988 | Msa0246260:CDS |
| AAGTTTATTCCCTGAGCTAA+TGG | 0.354061 | 2_2:-27357018 | None:intergenic |
| CCAATCTCAGCTCCGTTTGT+TGG | 0.366923 | 2_2:-27356761 | None:intergenic |
| CAGGGTGGGAAGATCCTAAC+AGG | 0.369090 | 2_2:+27356232 | Msa0246260:intron |
| GCAGAAATCTCAACAATTGT+TGG | 0.370966 | 2_2:-27356292 | None:intergenic |
| TTTGCAGCTGTGGGTACTGC+TGG | 0.376999 | 2_2:+27355761 | Msa0246260:CDS |
| ACTGGTGGTGGTCGCGAAGC+AGG | 0.378755 | 2_2:+27356809 | Msa0246260:CDS |
| AAAACAGTGAATGAAAGATT+TGG | 0.393915 | 2_2:+27355653 | Msa0246260:CDS |
| CCAACAAACGGAGCTGAGAT+TGG | 0.404416 | 2_2:+27356761 | Msa0246260:CDS |
| CTGGAGAAAGGGACTCTGGT+TGG | 0.420243 | 2_2:+27355987 | Msa0246260:CDS |
| TTTGACTTGTTTGTAAAGTC+CGG | 0.424516 | 2_2:-27355952 | None:intergenic |
| TTTACAAACAAGTCAAAATT+GGG | 0.425065 | 2_2:+27355958 | Msa0246260:CDS |
| CAACCAGAGTCCCTTTCTCC+AGG | 0.434562 | 2_2:-27355986 | None:intergenic |
| CAACAAACGGAGCTGAGATT+GGG | 0.438950 | 2_2:+27356762 | Msa0246260:CDS |
| GGATGATGCAGATATAAAAC+TGG | 0.464893 | 2_2:+27355721 | Msa0246260:CDS |
| GGGAGCCTTTGGTGGAGAAA+AGG | 0.468069 | 2_2:+27356784 | Msa0246260:CDS |
| CTAGTTGTGGGACTCCTAGA+AGG | 0.475019 | 2_2:-27355496 | None:intergenic |
| TTAGCTCAGGGAATAAACTT+TGG | 0.478425 | 2_2:+27357021 | Msa0246260:CDS |
| TTGGGAATCCCCTGGAGAAA+GGG | 0.486632 | 2_2:+27355976 | Msa0246260:CDS |
| AAGTGAACTACCATTAGCTC+AGG | 0.491818 | 2_2:+27357008 | Msa0246260:CDS |
| ATTGGGAATCCCCTGGAGAA+AGG | 0.493818 | 2_2:+27355975 | Msa0246260:CDS |
| GTGCACAACCTGCCGTAGAC+TGG | 0.494047 | 2_2:+27355790 | Msa0246260:CDS |
| GACCTGATACAATATTCAAA+TGG | 0.495548 | 2_2:+27356530 | Msa0246260:CDS |
| ATACAATATTCAAATGGATC+GGG | 0.497857 | 2_2:+27356536 | Msa0246260:CDS |
| GATACAATATTCAAATGGAT+CGG | 0.502700 | 2_2:+27356535 | Msa0246260:CDS |
| AATGTACTAGATCAACTTGC+CGG | 0.509920 | 2_2:+27355933 | Msa0246260:CDS |
| CATTGCAGCGATAAAATCTC+AGG | 0.515792 | 2_2:+27356052 | Msa0246260:CDS |
| CCACGGAAGAACGAGTATGA+AGG | 0.517238 | 2_2:-27356013 | None:intergenic |
| TCCCCTGGAGAAAGGGACTC+TGG | 0.518205 | 2_2:+27355983 | Msa0246260:CDS |
| TTTGGTGGAGAAAAGGCAAC+TGG | 0.521029 | 2_2:+27356791 | Msa0246260:CDS |
| TTCCGTGGAAAATTTCAAGA+AGG | 0.523125 | 2_2:+27356028 | Msa0246260:CDS |
| TCCGTGGAAAATTTCAAGAA+GGG | 0.524846 | 2_2:+27356029 | Msa0246260:CDS |
| TTGAGGAACAGAATTGTTCA+AGG | 0.525114 | 2_2:-27356479 | None:intergenic |
| CCTTCATACTCGTTCTTCCG+TGG | 0.528090 | 2_2:+27356013 | Msa0246260:CDS |
| CTGGTGGTGGTCGCGAAGCA+GGG | 0.530246 | 2_2:+27356810 | Msa0246260:CDS |
| GCTCCTATTGTAGGTGGGTG+CGG | 0.530980 | 2_2:+27355622 | Msa0246260:intron |
| GGAGAAAAGGCAACTGGTGG+TGG | 0.532581 | 2_2:+27356797 | Msa0246260:CDS |
| AATTTCATAACATAGAGAAC+TGG | 0.535713 | 2_2:-27356349 | None:intergenic |
| GGACGAGGAGATCTAGTTGT+GGG | 0.536348 | 2_2:-27355508 | None:intergenic |
| ATACCACAATCACTCCCTCT+TGG | 0.550016 | 2_2:-27356722 | None:intergenic |
| AATGTGAACATACCAACAAA+CGG | 0.551014 | 2_2:+27356749 | Msa0246260:CDS |
| AATACATGCGCCGTTCTACA+TGG | 0.552821 | 2_2:+27356849 | Msa0246260:CDS |
| GACTCCTAGAAGGTTGCGAC+AGG | 0.554329 | 2_2:-27355486 | None:intergenic |
| TAACAATGCAATTATAGTCA+TGG | 0.559286 | 2_2:+27355700 | Msa0246260:CDS |
| CACGGAAGAACGAGTATGAA+GGG | 0.563661 | 2_2:-27356012 | None:intergenic |
| AGTCAAAATTGGGAATCCCC+TGG | 0.565106 | 2_2:+27355968 | Msa0246260:CDS |
| AACCAGAGTCCCTTTCTCCA+GGG | 0.572658 | 2_2:-27355985 | None:intergenic |
| GCGAAGCAGGGAGTGACTCG+TGG | 0.578480 | 2_2:+27356822 | Msa0246260:CDS |
| ACCAGAGTCCCTTTCTCCAG+GGG | 0.578504 | 2_2:-27355984 | None:intergenic |
| AGGCCAAGAGGGAGTGATTG+TGG | 0.581330 | 2_2:+27356719 | Msa0246260:intron |
| GGTGGGAAGATCCTAACAGG+GGG | 0.585739 | 2_2:+27356235 | Msa0246260:CDS |
| AACAAACGGAGCTGAGATTG+GGG | 0.586818 | 2_2:+27356763 | Msa0246260:CDS |
| TTGAACAATTCTGTTCCTCA+AGG | 0.593286 | 2_2:+27356481 | Msa0246260:CDS |
| AAATGCTTACTGGAGTTAAG+TGG | 0.600833 | 2_2:+27355677 | Msa0246260:CDS |
| CTGTGGGTACTGCTGGTCAG+CGG | 0.614951 | 2_2:+27355768 | Msa0246260:CDS |
| GGGTGGGAAGATCCTAACAG+GGG | 0.625329 | 2_2:+27356234 | Msa0246260:intron |
| ATCGAACTACTCAGTCCTTG+AGG | 0.631688 | 2_2:-27356496 | None:intergenic |
| CTAAGACCTACCATGTAGAA+CGG | 0.635773 | 2_2:-27356859 | None:intergenic |
| GATTGCTGTGCAGGCCAAGA+GGG | 0.637896 | 2_2:+27356708 | Msa0246260:intron |
| GTGGGAAGATCCTAACAGGG+GGG | 0.652460 | 2_2:+27356236 | Msa0246260:CDS |
| GGGTACAAACACTTAGGACG+AGG | 0.661806 | 2_2:-27355523 | None:intergenic |
| AGGACGAGGAGATCTAGTTG+TGG | 0.665276 | 2_2:-27355509 | None:intergenic |
| ACGGAAGAACGAGTATGAAG+GGG | 0.674585 | 2_2:-27356011 | None:intergenic |
| CCTATTGTAGGTGGGTGCGG+AGG | 0.675816 | 2_2:+27355625 | Msa0246260:intron |
| AGTGAACTACCATTAGCTCA+GGG | 0.679489 | 2_2:+27357009 | Msa0246260:CDS |
| GGGTCTGTAGTAGAGTCAGA+CGG | 0.684038 | 2_2:+27356256 | Msa0246260:CDS |
| AGGGTGGGAAGATCCTAACA+GGG | 0.698475 | 2_2:+27356233 | Msa0246260:intron |
| ACAAACGGAGCTGAGATTGG+GGG | 0.698722 | 2_2:+27356764 | Msa0246260:CDS |
| TGATTGCTGTGCAGGCCAAG+AGG | 0.703640 | 2_2:+27356707 | Msa0246260:intron |
| GGTGGAGAAAAGGCAACTGG+TGG | 0.706059 | 2_2:+27356794 | Msa0246260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATATTAAATACCTTA+CGG | - | chr2_2:27355872-27355891 | None:intergenic | 15.0% |
| !!! | AGGTATTTAATATTCAATTT+TGG | + | chr2_2:27355874-27355893 | Msa0246260:intron | 15.0% |
| !!! | TTTTGTAGTTAAGTTAAATA+TGG | + | chr2_2:27356090-27356109 | Msa0246260:intron | 15.0% |
| !! | ATTGAATATTAAATACCTTA+CGG | - | chr2_2:27355872-27355891 | None:intergenic | 15.0% |
| !!! | AGGTATTTAATATTCAATTT+TGG | + | chr2_2:27355874-27355893 | Msa0246260:intron | 15.0% |
| !!! | TTTTGTAGTTAAGTTAAATA+TGG | + | chr2_2:27356090-27356109 | Msa0246260:intron | 15.0% |
| !! | TTTACAAACAAGTCAAAATT+GGG | + | chr2_2:27355958-27355977 | Msa0246260:CDS | 20.0% |
| !! | TTAACAGAACTTATAAGTAA+GGG | - | chr2_2:27356907-27356926 | None:intergenic | 20.0% |
| !! | ATTAACAGAACTTATAAGTA+AGG | - | chr2_2:27356908-27356927 | None:intergenic | 20.0% |
| !! | TTTACAAACAAGTCAAAATT+GGG | + | chr2_2:27355958-27355977 | Msa0246260:CDS | 20.0% |
| !! | TTAACAGAACTTATAAGTAA+GGG | - | chr2_2:27356907-27356926 | None:intergenic | 20.0% |
| !! | ATTAACAGAACTTATAAGTA+AGG | - | chr2_2:27356908-27356927 | None:intergenic | 20.0% |
| ! | CATTTCCTAATAATGTGTTA+TGG | - | chr2_2:27355603-27355622 | None:intergenic | 25.0% |
| ! | AAAACAGTGAATGAAAGATT+TGG | + | chr2_2:27355653-27355672 | Msa0246260:CDS | 25.0% |
| ! | TAACAATGCAATTATAGTCA+TGG | + | chr2_2:27355700-27355719 | Msa0246260:CDS | 25.0% |
| !! | TGAACTCAAGTTTTCAAAAT+TGG | - | chr2_2:27355824-27355843 | None:intergenic | 25.0% |
| ! | CTTTACAAACAAGTCAAAAT+TGG | + | chr2_2:27355957-27355976 | Msa0246260:CDS | 25.0% |
| ! | GTAGTTAAGTTAAATATGGT+CGG | + | chr2_2:27356094-27356113 | Msa0246260:intron | 25.0% |
| !! | AACTTTTGCTCAAATAAGAT+GGG | + | chr2_2:27356165-27356184 | Msa0246260:intron | 25.0% |
| ! | AATTTCATAACATAGAGAAC+TGG | - | chr2_2:27356352-27356371 | None:intergenic | 25.0% |
| ! | TCTCTATGTTATGAAATTTC+AGG | + | chr2_2:27356354-27356373 | Msa0246260:CDS | 25.0% |
| ! | AATCAGAAACTAAACTTGTA+AGG | - | chr2_2:27356416-27356435 | None:intergenic | 25.0% |
| ! | ATCCATTTGAATATTGTATC+AGG | - | chr2_2:27356535-27356554 | None:intergenic | 25.0% |
| ! | GATACAATATTCAAATGGAT+CGG | + | chr2_2:27356535-27356554 | Msa0246260:CDS | 25.0% |
| ! | ATACAATATTCAAATGGATC+GGG | + | chr2_2:27356536-27356555 | Msa0246260:CDS | 25.0% |
| ! | TATATACTAAAAAACACCAC+AGG | - | chr2_2:27356659-27356678 | None:intergenic | 25.0% |
| ! | ATTAAGAACATGCAAAGTAA+AGG | - | chr2_2:27356947-27356966 | None:intergenic | 25.0% |
| ! | CATTTCCTAATAATGTGTTA+TGG | - | chr2_2:27355603-27355622 | None:intergenic | 25.0% |
| ! | AAAACAGTGAATGAAAGATT+TGG | + | chr2_2:27355653-27355672 | Msa0246260:CDS | 25.0% |
| ! | TAACAATGCAATTATAGTCA+TGG | + | chr2_2:27355700-27355719 | Msa0246260:CDS | 25.0% |
| !! | TGAACTCAAGTTTTCAAAAT+TGG | - | chr2_2:27355824-27355843 | None:intergenic | 25.0% |
| ! | CTTTACAAACAAGTCAAAAT+TGG | + | chr2_2:27355957-27355976 | Msa0246260:CDS | 25.0% |
| ! | GTAGTTAAGTTAAATATGGT+CGG | + | chr2_2:27356094-27356113 | Msa0246260:intron | 25.0% |
| !! | AACTTTTGCTCAAATAAGAT+GGG | + | chr2_2:27356165-27356184 | Msa0246260:intron | 25.0% |
| ! | AATTTCATAACATAGAGAAC+TGG | - | chr2_2:27356352-27356371 | None:intergenic | 25.0% |
| ! | TCTCTATGTTATGAAATTTC+AGG | + | chr2_2:27356354-27356373 | Msa0246260:CDS | 25.0% |
| ! | AATCAGAAACTAAACTTGTA+AGG | - | chr2_2:27356416-27356435 | None:intergenic | 25.0% |
| ! | ATCCATTTGAATATTGTATC+AGG | - | chr2_2:27356535-27356554 | None:intergenic | 25.0% |
| ! | GATACAATATTCAAATGGAT+CGG | + | chr2_2:27356535-27356554 | Msa0246260:CDS | 25.0% |
| ! | ATACAATATTCAAATGGATC+GGG | + | chr2_2:27356536-27356555 | Msa0246260:CDS | 25.0% |
| ! | TATATACTAAAAAACACCAC+AGG | - | chr2_2:27356659-27356678 | None:intergenic | 25.0% |
| ! | ATTAAGAACATGCAAAGTAA+AGG | - | chr2_2:27356947-27356966 | None:intergenic | 25.0% |
| TGCAAATACAACAACAAGAA+AGG | + | chr2_2:27355562-27355581 | Msa0246260:intron | 30.0% | |
| GCAAATACAACAACAAGAAA+GGG | + | chr2_2:27355563-27355582 | Msa0246260:intron | 30.0% | |
| CAAATACAACAACAAGAAAG+GGG | + | chr2_2:27355564-27355583 | Msa0246260:intron | 30.0% | |
| AAATACAACAACAAGAAAGG+GGG | + | chr2_2:27355565-27355584 | Msa0246260:intron | 30.0% | |
| !!! | TTGGTTTTAATACCAGTCTA+CGG | - | chr2_2:27355805-27355824 | None:intergenic | 30.0% |
| !! | TTTGACTTGTTTGTAAAGTC+CGG | - | chr2_2:27355955-27355974 | None:intergenic | 30.0% |
| CAAAATTGGACATAACACAT+GGG | - | chr2_2:27356130-27356149 | None:intergenic | 30.0% | |
| ! | CAACTTTTGCTCAAATAAGA+TGG | + | chr2_2:27356164-27356183 | Msa0246260:intron | 30.0% |
| GACCTGATACAATATTCAAA+TGG | + | chr2_2:27356530-27356549 | Msa0246260:CDS | 30.0% | |
| AATGTGAACATACCAACAAA+CGG | + | chr2_2:27356749-27356768 | Msa0246260:CDS | 30.0% | |
| TTGTGCAGTACTATCAATTA+TGG | + | chr2_2:27356985-27357004 | Msa0246260:intron | 30.0% | |
| TGCAAATACAACAACAAGAA+AGG | + | chr2_2:27355562-27355581 | Msa0246260:intron | 30.0% | |
| GCAAATACAACAACAAGAAA+GGG | + | chr2_2:27355563-27355582 | Msa0246260:intron | 30.0% | |
| CAAATACAACAACAAGAAAG+GGG | + | chr2_2:27355564-27355583 | Msa0246260:intron | 30.0% | |
| AAATACAACAACAAGAAAGG+GGG | + | chr2_2:27355565-27355584 | Msa0246260:intron | 30.0% | |
| !!! | TTGGTTTTAATACCAGTCTA+CGG | - | chr2_2:27355805-27355824 | None:intergenic | 30.0% |
| !! | TTTGACTTGTTTGTAAAGTC+CGG | - | chr2_2:27355955-27355974 | None:intergenic | 30.0% |
| CAAAATTGGACATAACACAT+GGG | - | chr2_2:27356130-27356149 | None:intergenic | 30.0% | |
| ! | CAACTTTTGCTCAAATAAGA+TGG | + | chr2_2:27356164-27356183 | Msa0246260:intron | 30.0% |
| GACCTGATACAATATTCAAA+TGG | + | chr2_2:27356530-27356549 | Msa0246260:CDS | 30.0% | |
| AATGTGAACATACCAACAAA+CGG | + | chr2_2:27356749-27356768 | Msa0246260:CDS | 30.0% | |
| TTGTGCAGTACTATCAATTA+TGG | + | chr2_2:27356985-27357004 | Msa0246260:intron | 30.0% | |
| AATACAACAACAAGAAAGGG+GGG | + | chr2_2:27355566-27355585 | Msa0246260:intron | 35.0% | |
| TCCAGCCATAACACATTATT+AGG | + | chr2_2:27355595-27355614 | Msa0246260:intron | 35.0% | |
| TCCTAATAATGTGTTATGGC+TGG | - | chr2_2:27355599-27355618 | None:intergenic | 35.0% | |
| TTAGGAAATGCTCCTATTGT+AGG | + | chr2_2:27355613-27355632 | Msa0246260:intron | 35.0% | |
| AAGATTTGGCAAATGCTTAC+TGG | + | chr2_2:27355667-27355686 | Msa0246260:CDS | 35.0% | |
| AAATGCTTACTGGAGTTAAG+TGG | + | chr2_2:27355677-27355696 | Msa0246260:CDS | 35.0% | |
| GGATGATGCAGATATAAAAC+TGG | + | chr2_2:27355721-27355740 | Msa0246260:CDS | 35.0% | |
| ! | TCTATTTTCTTTGCAGCTGT+GGG | + | chr2_2:27355752-27355771 | Msa0246260:CDS | 35.0% |
| AATACCTTACGGAAACAACA+TGG | - | chr2_2:27355861-27355880 | None:intergenic | 35.0% | |
| AATGTACTAGATCAACTTGC+CGG | + | chr2_2:27355933-27355952 | Msa0246260:CDS | 35.0% | |
| TTCCGTGGAAAATTTCAAGA+AGG | + | chr2_2:27356028-27356047 | Msa0246260:CDS | 35.0% | |
| TCCGTGGAAAATTTCAAGAA+GGG | + | chr2_2:27356029-27356048 | Msa0246260:CDS | 35.0% | |
| GCAAAATTGGACATAACACA+TGG | - | chr2_2:27356131-27356150 | None:intergenic | 35.0% | |
| ! | GTGTTATGTCCAATTTTGCA+CGG | + | chr2_2:27356132-27356151 | Msa0246260:intron | 35.0% |
| CTAACAATACCGTGCAAAAT+TGG | - | chr2_2:27356144-27356163 | None:intergenic | 35.0% | |
| TACTTGACACTCTGATTATC+AGG | + | chr2_2:27356213-27356232 | Msa0246260:intron | 35.0% | |
| ACTTGACACTCTGATTATCA+GGG | + | chr2_2:27356214-27356233 | Msa0246260:intron | 35.0% | |
| GCAGAAATCTCAACAATTGT+TGG | - | chr2_2:27356295-27356314 | None:intergenic | 35.0% | |
| TTGAGGAACAGAATTGTTCA+AGG | - | chr2_2:27356482-27356501 | None:intergenic | 35.0% | |
| TTGAACAATTCTGTTCCTCA+AGG | + | chr2_2:27356481-27356500 | Msa0246260:CDS | 35.0% | |
| !! | AGTCATTAGAAGGTATCTAG+AGG | - | chr2_2:27356592-27356611 | None:intergenic | 35.0% |
| AAGTTTATTCCCTGAGCTAA+TGG | - | chr2_2:27357021-27357040 | None:intergenic | 35.0% | |
| TTAGCTCAGGGAATAAACTT+TGG | + | chr2_2:27357021-27357040 | Msa0246260:CDS | 35.0% | |
| AATACAACAACAAGAAAGGG+GGG | + | chr2_2:27355566-27355585 | Msa0246260:intron | 35.0% | |
| TCCAGCCATAACACATTATT+AGG | + | chr2_2:27355595-27355614 | Msa0246260:intron | 35.0% | |
| TCCTAATAATGTGTTATGGC+TGG | - | chr2_2:27355599-27355618 | None:intergenic | 35.0% | |
| TTAGGAAATGCTCCTATTGT+AGG | + | chr2_2:27355613-27355632 | Msa0246260:intron | 35.0% | |
| AAGATTTGGCAAATGCTTAC+TGG | + | chr2_2:27355667-27355686 | Msa0246260:CDS | 35.0% | |
| AAATGCTTACTGGAGTTAAG+TGG | + | chr2_2:27355677-27355696 | Msa0246260:CDS | 35.0% | |
| GGATGATGCAGATATAAAAC+TGG | + | chr2_2:27355721-27355740 | Msa0246260:CDS | 35.0% | |
| ! | TCTATTTTCTTTGCAGCTGT+GGG | + | chr2_2:27355752-27355771 | Msa0246260:CDS | 35.0% |
| AATACCTTACGGAAACAACA+TGG | - | chr2_2:27355861-27355880 | None:intergenic | 35.0% | |
| AATGTACTAGATCAACTTGC+CGG | + | chr2_2:27355933-27355952 | Msa0246260:CDS | 35.0% | |
| TTCCGTGGAAAATTTCAAGA+AGG | + | chr2_2:27356028-27356047 | Msa0246260:CDS | 35.0% | |
| TCCGTGGAAAATTTCAAGAA+GGG | + | chr2_2:27356029-27356048 | Msa0246260:CDS | 35.0% | |
| GCAAAATTGGACATAACACA+TGG | - | chr2_2:27356131-27356150 | None:intergenic | 35.0% | |
| ! | GTGTTATGTCCAATTTTGCA+CGG | + | chr2_2:27356132-27356151 | Msa0246260:intron | 35.0% |
| CTAACAATACCGTGCAAAAT+TGG | - | chr2_2:27356144-27356163 | None:intergenic | 35.0% | |
| TACTTGACACTCTGATTATC+AGG | + | chr2_2:27356213-27356232 | Msa0246260:intron | 35.0% | |
| ACTTGACACTCTGATTATCA+GGG | + | chr2_2:27356214-27356233 | Msa0246260:intron | 35.0% | |
| GCAGAAATCTCAACAATTGT+TGG | - | chr2_2:27356295-27356314 | None:intergenic | 35.0% | |
| TTGAGGAACAGAATTGTTCA+AGG | - | chr2_2:27356482-27356501 | None:intergenic | 35.0% | |
| TTGAACAATTCTGTTCCTCA+AGG | + | chr2_2:27356481-27356500 | Msa0246260:CDS | 35.0% | |
| !! | AGTCATTAGAAGGTATCTAG+AGG | - | chr2_2:27356592-27356611 | None:intergenic | 35.0% |
| AAGTTTATTCCCTGAGCTAA+TGG | - | chr2_2:27357021-27357040 | None:intergenic | 35.0% | |
| TTAGCTCAGGGAATAAACTT+TGG | + | chr2_2:27357021-27357040 | Msa0246260:CDS | 35.0% | |
| TTTGCAGTGTCTGTATCCAT+GGG | - | chr2_2:27355548-27355567 | None:intergenic | 40.0% | |
| ATTTGCAGTGTCTGTATCCA+TGG | - | chr2_2:27355549-27355568 | None:intergenic | 40.0% | |
| ATACAACAACAAGAAAGGGG+GGG | + | chr2_2:27355567-27355586 | Msa0246260:intron | 40.0% | |
| GAAATGCTCCTATTGTAGGT+GGG | + | chr2_2:27355617-27355636 | Msa0246260:intron | 40.0% | |
| ! | CTCTATTTTCTTTGCAGCTG+TGG | + | chr2_2:27355751-27355770 | Msa0246260:CDS | 40.0% |
| ! | TTTTAATACCAGTCTACGGC+AGG | - | chr2_2:27355801-27355820 | None:intergenic | 40.0% |
| ! | GCCCTTCTTGAAATTTTCCA+CGG | - | chr2_2:27356033-27356052 | None:intergenic | 40.0% |
| CATTGCAGCGATAAAATCTC+AGG | + | chr2_2:27356052-27356071 | Msa0246260:CDS | 40.0% | |
| ! | AGAGTGTCAAGTAAGCATCT+TGG | - | chr2_2:27356206-27356225 | None:intergenic | 40.0% |
| AAATGGATCGGGTAACTATC+TGG | + | chr2_2:27356547-27356566 | Msa0246260:intron | 40.0% | |
| CCTAAGCTGAAGTCATTAGA+AGG | - | chr2_2:27356602-27356621 | None:intergenic | 40.0% | |
| CCTTCTAATGACTTCAGCTT+AGG | + | chr2_2:27356599-27356618 | Msa0246260:intron | 40.0% | |
| !! | AGGCATCTTTTAAGGGGTTT+TGG | - | chr2_2:27356639-27356658 | None:intergenic | 40.0% |
| ! | ACACCACAGGCATCTTTTAA+GGG | - | chr2_2:27356646-27356665 | None:intergenic | 40.0% |
| ! | AACACCACAGGCATCTTTTA+AGG | - | chr2_2:27356647-27356666 | None:intergenic | 40.0% |
| CTAAGACCTACCATGTAGAA+CGG | - | chr2_2:27356862-27356881 | None:intergenic | 40.0% | |
| AAGTGAACTACCATTAGCTC+AGG | + | chr2_2:27357008-27357027 | Msa0246260:CDS | 40.0% | |
| AGTGAACTACCATTAGCTCA+GGG | + | chr2_2:27357009-27357028 | Msa0246260:CDS | 40.0% | |
| TTTGCAGTGTCTGTATCCAT+GGG | - | chr2_2:27355548-27355567 | None:intergenic | 40.0% | |
| ATTTGCAGTGTCTGTATCCA+TGG | - | chr2_2:27355549-27355568 | None:intergenic | 40.0% | |
| ATACAACAACAAGAAAGGGG+GGG | + | chr2_2:27355567-27355586 | Msa0246260:intron | 40.0% | |
| GAAATGCTCCTATTGTAGGT+GGG | + | chr2_2:27355617-27355636 | Msa0246260:intron | 40.0% | |
| ! | CTCTATTTTCTTTGCAGCTG+TGG | + | chr2_2:27355751-27355770 | Msa0246260:CDS | 40.0% |
| ! | TTTTAATACCAGTCTACGGC+AGG | - | chr2_2:27355801-27355820 | None:intergenic | 40.0% |
| ! | GCCCTTCTTGAAATTTTCCA+CGG | - | chr2_2:27356033-27356052 | None:intergenic | 40.0% |
| CATTGCAGCGATAAAATCTC+AGG | + | chr2_2:27356052-27356071 | Msa0246260:CDS | 40.0% | |
| ! | AGAGTGTCAAGTAAGCATCT+TGG | - | chr2_2:27356206-27356225 | None:intergenic | 40.0% |
| AAATGGATCGGGTAACTATC+TGG | + | chr2_2:27356547-27356566 | Msa0246260:intron | 40.0% | |
| CCTAAGCTGAAGTCATTAGA+AGG | - | chr2_2:27356602-27356621 | None:intergenic | 40.0% | |
| CCTTCTAATGACTTCAGCTT+AGG | + | chr2_2:27356599-27356618 | Msa0246260:intron | 40.0% | |
| !! | AGGCATCTTTTAAGGGGTTT+TGG | - | chr2_2:27356639-27356658 | None:intergenic | 40.0% |
| ! | ACACCACAGGCATCTTTTAA+GGG | - | chr2_2:27356646-27356665 | None:intergenic | 40.0% |
| ! | AACACCACAGGCATCTTTTA+AGG | - | chr2_2:27356647-27356666 | None:intergenic | 40.0% |
| CTAAGACCTACCATGTAGAA+CGG | - | chr2_2:27356862-27356881 | None:intergenic | 40.0% | |
| AAGTGAACTACCATTAGCTC+AGG | + | chr2_2:27357008-27357027 | Msa0246260:CDS | 40.0% | |
| AGTGAACTACCATTAGCTCA+GGG | + | chr2_2:27357009-27357028 | Msa0246260:CDS | 40.0% | |
| AATTCCTGTCGCAACCTTCT+AGG | + | chr2_2:27355482-27355501 | Msa0246260:CDS | 45.0% | |
| TTGCAGTGTCTGTATCCATG+GGG | - | chr2_2:27355547-27355566 | None:intergenic | 45.0% | |
| GGAAATGCTCCTATTGTAGG+TGG | + | chr2_2:27355616-27355635 | Msa0246260:intron | 45.0% | |
| !! | GCATCCATGTTGTTTCCGTA+AGG | + | chr2_2:27355854-27355873 | Msa0246260:intron | 45.0% |
| AGTCAAAATTGGGAATCCCC+TGG | + | chr2_2:27355968-27355987 | Msa0246260:CDS | 45.0% | |
| ACGGAAGAACGAGTATGAAG+GGG | - | chr2_2:27356014-27356033 | None:intergenic | 45.0% | |
| CACGGAAGAACGAGTATGAA+GGG | - | chr2_2:27356015-27356034 | None:intergenic | 45.0% | |
| TGACACTCTGATTATCAGGG+TGG | + | chr2_2:27356217-27356236 | Msa0246260:intron | 45.0% | |
| GACACTCTGATTATCAGGGT+GGG | + | chr2_2:27356218-27356237 | Msa0246260:intron | 45.0% | |
| ATCGAACTACTCAGTCCTTG+AGG | - | chr2_2:27356499-27356518 | None:intergenic | 45.0% | |
| AACCCCTTAAAAGATGCCTG+TGG | + | chr2_2:27356640-27356659 | Msa0246260:intron | 45.0% | |
| ! | CACCACAGGCATCTTTTAAG+GGG | - | chr2_2:27356645-27356664 | None:intergenic | 45.0% |
| ATACCACAATCACTCCCTCT+TGG | - | chr2_2:27356725-27356744 | None:intergenic | 45.0% | |
| CAACAAACGGAGCTGAGATT+GGG | + | chr2_2:27356762-27356781 | Msa0246260:CDS | 45.0% | |
| AACAAACGGAGCTGAGATTG+GGG | + | chr2_2:27356763-27356782 | Msa0246260:CDS | 45.0% | |
| ! | AGTTGCCTTTTCTCCACCAA+AGG | - | chr2_2:27356792-27356811 | None:intergenic | 45.0% |
| TTTGGTGGAGAAAAGGCAAC+TGG | + | chr2_2:27356791-27356810 | Msa0246260:CDS | 45.0% | |
| AATACATGCGCCGTTCTACA+TGG | + | chr2_2:27356849-27356868 | Msa0246260:CDS | 45.0% | |
| AATTCCTGTCGCAACCTTCT+AGG | + | chr2_2:27355482-27355501 | Msa0246260:CDS | 45.0% | |
| TTGCAGTGTCTGTATCCATG+GGG | - | chr2_2:27355547-27355566 | None:intergenic | 45.0% | |
| GGAAATGCTCCTATTGTAGG+TGG | + | chr2_2:27355616-27355635 | Msa0246260:intron | 45.0% | |
| !! | GCATCCATGTTGTTTCCGTA+AGG | + | chr2_2:27355854-27355873 | Msa0246260:intron | 45.0% |
| AGTCAAAATTGGGAATCCCC+TGG | + | chr2_2:27355968-27355987 | Msa0246260:CDS | 45.0% | |
| ACGGAAGAACGAGTATGAAG+GGG | - | chr2_2:27356014-27356033 | None:intergenic | 45.0% | |
| CACGGAAGAACGAGTATGAA+GGG | - | chr2_2:27356015-27356034 | None:intergenic | 45.0% | |
| TGACACTCTGATTATCAGGG+TGG | + | chr2_2:27356217-27356236 | Msa0246260:intron | 45.0% | |
| GACACTCTGATTATCAGGGT+GGG | + | chr2_2:27356218-27356237 | Msa0246260:intron | 45.0% | |
| ATCGAACTACTCAGTCCTTG+AGG | - | chr2_2:27356499-27356518 | None:intergenic | 45.0% | |
| AACCCCTTAAAAGATGCCTG+TGG | + | chr2_2:27356640-27356659 | Msa0246260:intron | 45.0% | |
| ! | CACCACAGGCATCTTTTAAG+GGG | - | chr2_2:27356645-27356664 | None:intergenic | 45.0% |
| ATACCACAATCACTCCCTCT+TGG | - | chr2_2:27356725-27356744 | None:intergenic | 45.0% | |
| CAACAAACGGAGCTGAGATT+GGG | + | chr2_2:27356762-27356781 | Msa0246260:CDS | 45.0% | |
| AACAAACGGAGCTGAGATTG+GGG | + | chr2_2:27356763-27356782 | Msa0246260:CDS | 45.0% | |
| ! | AGTTGCCTTTTCTCCACCAA+AGG | - | chr2_2:27356792-27356811 | None:intergenic | 45.0% |
| TTTGGTGGAGAAAAGGCAAC+TGG | + | chr2_2:27356791-27356810 | Msa0246260:CDS | 45.0% | |
| AATACATGCGCCGTTCTACA+TGG | + | chr2_2:27356849-27356868 | Msa0246260:CDS | 45.0% | |
| CTAGTTGTGGGACTCCTAGA+AGG | - | chr2_2:27355499-27355518 | None:intergenic | 50.0% | |
| GGACGAGGAGATCTAGTTGT+GGG | - | chr2_2:27355511-27355530 | None:intergenic | 50.0% | |
| AGGACGAGGAGATCTAGTTG+TGG | - | chr2_2:27355512-27355531 | None:intergenic | 50.0% | |
| GGGTACAAACACTTAGGACG+AGG | - | chr2_2:27355526-27355545 | None:intergenic | 50.0% | |
| ! | CCATGGGGGTACAAACACTT+AGG | - | chr2_2:27355532-27355551 | None:intergenic | 50.0% |
| CCTAAGTGTTTGTACCCCCA+TGG | + | chr2_2:27355529-27355548 | Msa0246260:intron | 50.0% | |
| TGCAGTGTCTGTATCCATGG+GGG | - | chr2_2:27355546-27355565 | None:intergenic | 50.0% | |
| ATTGGGAATCCCCTGGAGAA+AGG | + | chr2_2:27355975-27355994 | Msa0246260:CDS | 50.0% | |
| TTGGGAATCCCCTGGAGAAA+GGG | + | chr2_2:27355976-27355995 | Msa0246260:CDS | 50.0% | |
| AACCAGAGTCCCTTTCTCCA+GGG | - | chr2_2:27355988-27356007 | None:intergenic | 50.0% | |
| TGGAGAAAGGGACTCTGGTT+GGG | + | chr2_2:27355988-27356007 | Msa0246260:CDS | 50.0% | |
| CCACGGAAGAACGAGTATGA+AGG | - | chr2_2:27356016-27356035 | None:intergenic | 50.0% | |
| CCTTCATACTCGTTCTTCCG+TGG | + | chr2_2:27356013-27356032 | Msa0246260:CDS | 50.0% | |
| AGGGTGGGAAGATCCTAACA+GGG | + | chr2_2:27356233-27356252 | Msa0246260:intron | 50.0% | |
| GGGTCTGTAGTAGAGTCAGA+CGG | + | chr2_2:27356256-27356275 | Msa0246260:CDS | 50.0% | |
| CATGAGTGTGATTGCTGTGC+AGG | + | chr2_2:27356699-27356718 | Msa0246260:intron | 50.0% | |
| CCAATCTCAGCTCCGTTTGT+TGG | - | chr2_2:27356764-27356783 | None:intergenic | 50.0% | |
| CCAACAAACGGAGCTGAGAT+TGG | + | chr2_2:27356761-27356780 | Msa0246260:CDS | 50.0% | |
| ACAAACGGAGCTGAGATTGG+GGG | + | chr2_2:27356764-27356783 | Msa0246260:CDS | 50.0% | |
| CTAGTTGTGGGACTCCTAGA+AGG | - | chr2_2:27355499-27355518 | None:intergenic | 50.0% | |
| GGACGAGGAGATCTAGTTGT+GGG | - | chr2_2:27355511-27355530 | None:intergenic | 50.0% | |
| AGGACGAGGAGATCTAGTTG+TGG | - | chr2_2:27355512-27355531 | None:intergenic | 50.0% | |
| GGGTACAAACACTTAGGACG+AGG | - | chr2_2:27355526-27355545 | None:intergenic | 50.0% | |
| ! | CCATGGGGGTACAAACACTT+AGG | - | chr2_2:27355532-27355551 | None:intergenic | 50.0% |
| CCTAAGTGTTTGTACCCCCA+TGG | + | chr2_2:27355529-27355548 | Msa0246260:intron | 50.0% | |
| TGCAGTGTCTGTATCCATGG+GGG | - | chr2_2:27355546-27355565 | None:intergenic | 50.0% | |
| ATTGGGAATCCCCTGGAGAA+AGG | + | chr2_2:27355975-27355994 | Msa0246260:CDS | 50.0% | |
| TTGGGAATCCCCTGGAGAAA+GGG | + | chr2_2:27355976-27355995 | Msa0246260:CDS | 50.0% | |
| AACCAGAGTCCCTTTCTCCA+GGG | - | chr2_2:27355988-27356007 | None:intergenic | 50.0% | |
| TGGAGAAAGGGACTCTGGTT+GGG | + | chr2_2:27355988-27356007 | Msa0246260:CDS | 50.0% | |
| CCACGGAAGAACGAGTATGA+AGG | - | chr2_2:27356016-27356035 | None:intergenic | 50.0% | |
| CCTTCATACTCGTTCTTCCG+TGG | + | chr2_2:27356013-27356032 | Msa0246260:CDS | 50.0% | |
| AGGGTGGGAAGATCCTAACA+GGG | + | chr2_2:27356233-27356252 | Msa0246260:intron | 50.0% | |
| GGGTCTGTAGTAGAGTCAGA+CGG | + | chr2_2:27356256-27356275 | Msa0246260:CDS | 50.0% | |
| CATGAGTGTGATTGCTGTGC+AGG | + | chr2_2:27356699-27356718 | Msa0246260:intron | 50.0% | |
| CCAATCTCAGCTCCGTTTGT+TGG | - | chr2_2:27356764-27356783 | None:intergenic | 50.0% | |
| CCAACAAACGGAGCTGAGAT+TGG | + | chr2_2:27356761-27356780 | Msa0246260:CDS | 50.0% | |
| ACAAACGGAGCTGAGATTGG+GGG | + | chr2_2:27356764-27356783 | Msa0246260:CDS | 50.0% | |
| GACTCCTAGAAGGTTGCGAC+AGG | - | chr2_2:27355489-27355508 | None:intergenic | 55.0% | |
| GCTCCTATTGTAGGTGGGTG+CGG | + | chr2_2:27355622-27355641 | Msa0246260:intron | 55.0% | |
| ! | TTTGCAGCTGTGGGTACTGC+TGG | + | chr2_2:27355761-27355780 | Msa0246260:CDS | 55.0% |
| ACCAGAGTCCCTTTCTCCAG+GGG | - | chr2_2:27355987-27356006 | None:intergenic | 55.0% | |
| CAACCAGAGTCCCTTTCTCC+AGG | - | chr2_2:27355989-27356008 | None:intergenic | 55.0% | |
| CTGGAGAAAGGGACTCTGGT+TGG | + | chr2_2:27355987-27356006 | Msa0246260:CDS | 55.0% | |
| CAGGGTGGGAAGATCCTAAC+AGG | + | chr2_2:27356232-27356251 | Msa0246260:intron | 55.0% | |
| GGGTGGGAAGATCCTAACAG+GGG | + | chr2_2:27356234-27356253 | Msa0246260:intron | 55.0% | |
| GGTGGGAAGATCCTAACAGG+GGG | + | chr2_2:27356235-27356254 | Msa0246260:CDS | 55.0% | |
| GTGGGAAGATCCTAACAGGG+GGG | + | chr2_2:27356236-27356255 | Msa0246260:CDS | 55.0% | |
| CTACTACAGACCCCCCTGTT+AGG | - | chr2_2:27356249-27356268 | None:intergenic | 55.0% | |
| TGATTGCTGTGCAGGCCAAG+AGG | + | chr2_2:27356707-27356726 | Msa0246260:intron | 55.0% | |
| GATTGCTGTGCAGGCCAAGA+GGG | + | chr2_2:27356708-27356727 | Msa0246260:intron | 55.0% | |
| AGGCCAAGAGGGAGTGATTG+TGG | + | chr2_2:27356719-27356738 | Msa0246260:intron | 55.0% | |
| GGGAGCCTTTGGTGGAGAAA+AGG | + | chr2_2:27356784-27356803 | Msa0246260:CDS | 55.0% | |
| GGTGGAGAAAAGGCAACTGG+TGG | + | chr2_2:27356794-27356813 | Msa0246260:CDS | 55.0% | |
| GGAGAAAAGGCAACTGGTGG+TGG | + | chr2_2:27356797-27356816 | Msa0246260:CDS | 55.0% | |
| CATGCGCCGTTCTACATGGT+AGG | + | chr2_2:27356853-27356872 | Msa0246260:intron | 55.0% | |
| GACTCCTAGAAGGTTGCGAC+AGG | - | chr2_2:27355489-27355508 | None:intergenic | 55.0% | |
| GCTCCTATTGTAGGTGGGTG+CGG | + | chr2_2:27355622-27355641 | Msa0246260:intron | 55.0% | |
| ! | TTTGCAGCTGTGGGTACTGC+TGG | + | chr2_2:27355761-27355780 | Msa0246260:CDS | 55.0% |
| ACCAGAGTCCCTTTCTCCAG+GGG | - | chr2_2:27355987-27356006 | None:intergenic | 55.0% | |
| CAACCAGAGTCCCTTTCTCC+AGG | - | chr2_2:27355989-27356008 | None:intergenic | 55.0% | |
| CTGGAGAAAGGGACTCTGGT+TGG | + | chr2_2:27355987-27356006 | Msa0246260:CDS | 55.0% | |
| CAGGGTGGGAAGATCCTAAC+AGG | + | chr2_2:27356232-27356251 | Msa0246260:intron | 55.0% | |
| GGGTGGGAAGATCCTAACAG+GGG | + | chr2_2:27356234-27356253 | Msa0246260:intron | 55.0% | |
| GGTGGGAAGATCCTAACAGG+GGG | + | chr2_2:27356235-27356254 | Msa0246260:CDS | 55.0% | |
| GTGGGAAGATCCTAACAGGG+GGG | + | chr2_2:27356236-27356255 | Msa0246260:CDS | 55.0% | |
| CTACTACAGACCCCCCTGTT+AGG | - | chr2_2:27356249-27356268 | None:intergenic | 55.0% | |
| TGATTGCTGTGCAGGCCAAG+AGG | + | chr2_2:27356707-27356726 | Msa0246260:intron | 55.0% | |
| GATTGCTGTGCAGGCCAAGA+GGG | + | chr2_2:27356708-27356727 | Msa0246260:intron | 55.0% | |
| AGGCCAAGAGGGAGTGATTG+TGG | + | chr2_2:27356719-27356738 | Msa0246260:intron | 55.0% | |
| GGGAGCCTTTGGTGGAGAAA+AGG | + | chr2_2:27356784-27356803 | Msa0246260:CDS | 55.0% | |
| GGTGGAGAAAAGGCAACTGG+TGG | + | chr2_2:27356794-27356813 | Msa0246260:CDS | 55.0% | |
| GGAGAAAAGGCAACTGGTGG+TGG | + | chr2_2:27356797-27356816 | Msa0246260:CDS | 55.0% | |
| CATGCGCCGTTCTACATGGT+AGG | + | chr2_2:27356853-27356872 | Msa0246260:intron | 55.0% | |
| CCTCCGCACCCACCTACAAT+AGG | - | chr2_2:27355628-27355647 | None:intergenic | 60.0% | |
| CCTATTGTAGGTGGGTGCGG+AGG | + | chr2_2:27355625-27355644 | Msa0246260:intron | 60.0% | |
| ! | CTGTGGGTACTGCTGGTCAG+CGG | + | chr2_2:27355768-27355787 | Msa0246260:CDS | 60.0% |
| GTGCACAACCTGCCGTAGAC+TGG | + | chr2_2:27355790-27355809 | Msa0246260:CDS | 60.0% | |
| TCCCCTGGAGAAAGGGACTC+TGG | + | chr2_2:27355983-27356002 | Msa0246260:CDS | 60.0% | |
| GCTGAGATTGGGGGAGCCTT+TGG | + | chr2_2:27356773-27356792 | Msa0246260:CDS | 60.0% | |
| GAGATTGGGGGAGCCTTTGG+TGG | + | chr2_2:27356776-27356795 | Msa0246260:CDS | 60.0% | |
| CCTCCGCACCCACCTACAAT+AGG | - | chr2_2:27355628-27355647 | None:intergenic | 60.0% | |
| CCTATTGTAGGTGGGTGCGG+AGG | + | chr2_2:27355625-27355644 | Msa0246260:intron | 60.0% | |
| ! | CTGTGGGTACTGCTGGTCAG+CGG | + | chr2_2:27355768-27355787 | Msa0246260:CDS | 60.0% |
| GTGCACAACCTGCCGTAGAC+TGG | + | chr2_2:27355790-27355809 | Msa0246260:CDS | 60.0% | |
| TCCCCTGGAGAAAGGGACTC+TGG | + | chr2_2:27355983-27356002 | Msa0246260:CDS | 60.0% | |
| GCTGAGATTGGGGGAGCCTT+TGG | + | chr2_2:27356773-27356792 | Msa0246260:CDS | 60.0% | |
| GAGATTGGGGGAGCCTTTGG+TGG | + | chr2_2:27356776-27356795 | Msa0246260:CDS | 60.0% | |
| !! | ACTGGTGGTGGTCGCGAAGC+AGG | + | chr2_2:27356809-27356828 | Msa0246260:CDS | 65.0% |
| !! | CTGGTGGTGGTCGCGAAGCA+GGG | + | chr2_2:27356810-27356829 | Msa0246260:CDS | 65.0% |
| GCGAAGCAGGGAGTGACTCG+TGG | + | chr2_2:27356822-27356841 | Msa0246260:CDS | 65.0% | |
| !! | ACTGGTGGTGGTCGCGAAGC+AGG | + | chr2_2:27356809-27356828 | Msa0246260:CDS | 65.0% |
| !! | CTGGTGGTGGTCGCGAAGCA+GGG | + | chr2_2:27356810-27356829 | Msa0246260:CDS | 65.0% |
| GCGAAGCAGGGAGTGACTCG+TGG | + | chr2_2:27356822-27356841 | Msa0246260:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 27355473 | 27357047 | 27355473 | ID=Msa0246260;Name=Msa0246260 |
| chr2_2 | mRNA | 27355473 | 27357047 | 27355473 | ID=Msa0246260-mRNA-1;Parent=Msa0246260;Name=Msa0246260-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.85|1|1|7|0|282 |
| chr2_2 | exon | 27355473 | 27355535 | 27355473 | ID=Msa0246260-mRNA-1:exon:9919;Parent=Msa0246260-mRNA-1 |
| chr2_2 | exon | 27355635 | 27355811 | 27355635 | ID=Msa0246260-mRNA-1:exon:9920;Parent=Msa0246260-mRNA-1 |
| chr2_2 | exon | 27355909 | 27356073 | 27355909 | ID=Msa0246260-mRNA-1:exon:9921;Parent=Msa0246260-mRNA-1 |
| chr2_2 | exon | 27356235 | 27356375 | 27356235 | ID=Msa0246260-mRNA-1:exon:9922;Parent=Msa0246260-mRNA-1 |
| chr2_2 | exon | 27356460 | 27356557 | 27356460 | ID=Msa0246260-mRNA-1:exon:9923;Parent=Msa0246260-mRNA-1 |
| chr2_2 | exon | 27356721 | 27356870 | 27356721 | ID=Msa0246260-mRNA-1:exon:9924;Parent=Msa0246260-mRNA-1 |
| chr2_2 | exon | 27356993 | 27357047 | 27356993 | ID=Msa0246260-mRNA-1:exon:9925;Parent=Msa0246260-mRNA-1 |
| chr2_2 | CDS | 27355473 | 27355535 | 27355473 | ID=Msa0246260-mRNA-1:cds;Parent=Msa0246260-mRNA-1 |
| chr2_2 | CDS | 27355635 | 27355811 | 27355635 | ID=Msa0246260-mRNA-1:cds;Parent=Msa0246260-mRNA-1 |
| chr2_2 | CDS | 27355909 | 27356073 | 27355909 | ID=Msa0246260-mRNA-1:cds;Parent=Msa0246260-mRNA-1 |
| chr2_2 | CDS | 27356235 | 27356375 | 27356235 | ID=Msa0246260-mRNA-1:cds;Parent=Msa0246260-mRNA-1 |
| chr2_2 | CDS | 27356460 | 27356557 | 27356460 | ID=Msa0246260-mRNA-1:cds;Parent=Msa0246260-mRNA-1 |
| chr2_2 | CDS | 27356721 | 27356870 | 27356721 | ID=Msa0246260-mRNA-1:cds;Parent=Msa0246260-mRNA-1 |
| chr2_2 | CDS | 27356993 | 27357047 | 27356993 | ID=Msa0246260-mRNA-1:cds;Parent=Msa0246260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
